{
"metabolites":[
{
"id":"10fthf_c",
"name":"10-Formyltetrahydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C20H21N7O7",
"notes":{
"original_bigg_ids":[
"_10fthf_c"
]
},
"annotation":{
"bigg.metabolite":[
"10fthf"
],
"biocyc":[
"META:10-FORMYL-THF"
],
"chebi":[
"CHEBI:19108",
"CHEBI:15637",
"CHEBI:698",
"CHEBI:19109",
"CHEBI:11304",
"CHEBI:57454"
],
"hmdb":[
"HMDB00972"
],
"inchi_key":[
"AUFGTPPARQZWDO-YPMHNXCESA-L"
],
"kegg.compound":[
"C00234"
],
"metanetx.chemical":[
"MNXM237"
],
"reactome.compound":[
"5389850",
"419151"
],
"sabiork":[
"1318"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00201"
]
}
},
{
"id":"12dgr120_c",
"name":"1,2-Diacyl-sn-glycerol (didodecanoyl, n-C12:0)",
"compartment":"c",
"formula":"C27H52O5",
"notes":{
"original_bigg_ids":[
"_12dgr120_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr120"
],
"metanetx.chemical":[
"MNXM4939"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr140_c",
"name":"1,2-Diacyl-sn-glycerol (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"formula":"C31H60O5",
"notes":{
"original_bigg_ids":[
"_12dgr140_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr140"
],
"metanetx.chemical":[
"MNXM146479"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr141_c",
"name":"1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"formula":"C31H56O5",
"notes":{
"original_bigg_ids":[
"_12dgr141_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr141"
],
"metanetx.chemical":[
"MNXM4940"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr160_c",
"name":"1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"formula":"C35H68O5",
"notes":{
"original_bigg_ids":[
"_12dgr160_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr160"
],
"metanetx.chemical":[
"MNXM3132"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr161_c",
"name":"1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1)",
"compartment":"c",
"formula":"C35H64O5",
"notes":{
"original_bigg_ids":[
"_12dgr161_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr161"
],
"metanetx.chemical":[
"MNXM3774"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr180_c",
"name":"1,2-Diacyl-sn-glycerol (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"formula":"C39H76O5",
"notes":{
"original_bigg_ids":[
"_12dgr180_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr180"
],
"metanetx.chemical":[
"MNXM4217"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr181_c",
"name":"1,2-Diacyl-sn-glycerol (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"formula":"C39H72O5",
"notes":{
"original_bigg_ids":[
"_12dgr181_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr181"
],
"metanetx.chemical":[
"MNXM3775"
],
"sbo":"SBO:0000247"
}
},
{
"id":"13dpg_c",
"name":"3-Phospho-D-glyceroyl phosphate",
"compartment":"c",
"charge":-4,
"formula":"C3H4O10P2",
"notes":{
"original_bigg_ids":[
"_13dpg_c"
]
},
"annotation":{
"bigg.metabolite":[
"13dpg"
],
"biocyc":[
"META:DPG"
],
"chebi":[
"CHEBI:57604",
"CHEBI:20189",
"CHEBI:11881",
"CHEBI:16001",
"CHEBI:1658"
],
"hmdb":[
"HMDB62758"
],
"inchi_key":[
"LJQLQCAXBUHEAZ-UWTATZPHSA-J"
],
"kegg.compound":[
"C00236"
],
"metanetx.chemical":[
"MNXM261"
],
"reactome.compound":[
"29800"
],
"sabiork":[
"21215"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00203"
]
}
},
{
"id":"13ppd_c",
"name":"1,3-Propanediol",
"compartment":"c",
"formula":"C3H8O2",
"notes":{
"original_bigg_ids":[
"_13ppd_c"
]
},
"annotation":{
"bigg.metabolite":[
"13ppd"
],
"biocyc":[
"META:CPD-347"
],
"chebi":[
"CHEBI:44868",
"CHEBI:8471",
"CHEBI:14902",
"CHEBI:26286",
"CHEBI:16109"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/7987e84d-4979-49a1-974e-6d9a36411041"
],
"inchi_key":[
"YPFDHNVEDLHUCE-UHFFFAOYSA-N"
],
"kegg.compound":[
"C02457"
],
"metanetx.chemical":[
"MNXM2861"
],
"sabiork":[
"2417"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01618"
]
}
},
{
"id":"1ddecg3p_c",
"name":"1-dodecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C15H29O7P1",
"notes":{
"original_bigg_ids":[
"_1ddecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1ddecg3p"
],
"biocyc":[
"META:CPD0-2200"
],
"chebi":[
"CHEBI:72682",
"CHEBI:62840"
],
"hmdb":[
"HMDB62319"
],
"inchi_key":[
"STTKJLVEXMKLNA-CQSZACIVSA-L"
],
"lipidmaps":[
"LMGP10050015"
],
"metanetx.chemical":[
"MNXM4232"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15325"
],
"slm":[
"000000650"
]
}
},
{
"id":"1hdec9eg3p_c",
"name":"1-hexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C19H35O7P1",
"notes":{
"original_bigg_ids":[
"_1hdec9eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1hdec9eg3p"
],
"metanetx.chemical":[
"MNXM91047"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15326"
]
}
},
{
"id":"1hdecg3p_c",
"name":"1-hexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C19H37O7P1",
"notes":{
"original_bigg_ids":[
"_1hdecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1hdecg3p"
],
"metanetx.chemical":[
"MNXM90586"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15327"
]
}
},
{
"id":"1odec11eg3p_c",
"name":"1-octadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C21H39O7P1",
"notes":{
"original_bigg_ids":[
"_1odec11eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1odec11eg3p"
],
"metanetx.chemical":[
"MNXM91049"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15328"
]
}
},
{
"id":"1odecg3p_c",
"name":"1-octadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C21H41O7P1",
"notes":{
"original_bigg_ids":[
"_1odecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1odecg3p"
],
"biocyc":[
"META:CPD0-2113"
],
"chebi":[
"CHEBI:74850",
"CHEBI:74565"
],
"hmdb":[
"HMDB07854"
],
"inchi_key":[
"LAYXSTYJRSVXIH-HXUWFJFHSA-L"
],
"lipidmaps":[
"LMGP10050005"
],
"metanetx.chemical":[
"MNXM32950"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15329"
],
"slm":[
"000000640"
]
}
},
{
"id":"1p3h5c_c",
"name":"L 1 Pyrroline 3 hydroxy 5 carboxylate C5H6NO3",
"compartment":"c",
"charge":-1,
"formula":"C5H6NO3",
"notes":{
"original_bigg_ids":[
"_1p3h5c_c"
]
},
"annotation":{
"bigg.metabolite":[
"1p3h5c"
],
"biocyc":[
"META:PYRROLINE-HYDROXY-CARBOXYLATE"
],
"chebi":[
"CHEBI:6151",
"CHEBI:62612"
],
"hmdb":[
"HMDB62585"
],
"inchi_key":[
"WFOFKRKDDKGRIK-DMTCNVIQSA-M"
],
"kegg.compound":[
"C04281"
],
"metanetx.chemical":[
"MNXM114091"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02625"
]
}
},
{
"id":"1pyr5c_c",
"name":"1-Pyrroline-5-carboxylate",
"compartment":"c",
"charge":-1,
"formula":"C5H6NO2",
"notes":{
"original_bigg_ids":[
"_1pyr5c_c"
]
},
"annotation":{
"bigg.metabolite":[
"1pyr5c"
],
"biocyc":[
"META:L-DELTA1-PYRROLINE_5-CARBOXYLATE"
],
"chebi":[
"CHEBI:11297",
"CHEBI:26458",
"CHEBI:18727",
"CHEBI:371",
"CHEBI:15893",
"CHEBI:29066",
"CHEBI:11689",
"CHEBI:1372",
"CHEBI:17388",
"CHEBI:12409",
"CHEBI:19873",
"CHEBI:19095"
],
"hmdb":[
"HMDB01301",
"HMDB02240"
],
"inchi_key":[
"DWAKNKKXGALPNW-UHFFFAOYSA-M"
],
"kegg.compound":[
"C03912",
"C04322"
],
"metanetx.chemical":[
"MNXM1617"
],
"reactome.compound":[
"113590",
"35305"
],
"sabiork":[
"6942",
"7234"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29655",
"cpd02651",
"cpd02431"
]
}
},
{
"id":"1tdec7eg3p_c",
"name":"1-tetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C17H31O7P1",
"notes":{
"original_bigg_ids":[
"_1tdec7eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1tdec7eg3p"
],
"metanetx.chemical":[
"MNXM91053"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15330"
]
}
},
{
"id":"1tdecg3p_c",
"name":"1-tetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C17H33O7P1",
"notes":{
"original_bigg_ids":[
"_1tdecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1tdecg3p"
],
"biocyc":[
"META:CPD-18379"
],
"chebi":[
"CHEBI:62833",
"CHEBI:72683"
],
"hmdb":[
"HMDB62321"
],
"inchi_key":[
"FAZBDRGXCKPVJU-MRXNPFEDSA-L"
],
"lipidmaps":[
"LMGP10050007"
],
"metanetx.chemical":[
"MNXM3426"
],
"reactome.compound":[
"8878649"
],
"sabiork":[
"26679"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15331"
],
"slm":[
"000000647"
]
}
},
{
"id":"23dhdp_c",
"name":"2,3-Dihydrodipicolinate",
"compartment":"c",
"charge":-2,
"formula":"C7H5NO4",
"notes":{
"original_bigg_ids":[
"_23dhdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhdp"
],
"biocyc":[
"META:2-3-DIHYDRODIPICOLINATE"
],
"chebi":[
"CHEBI:18042",
"CHEBI:23739",
"CHEBI:878",
"CHEBI:48052",
"CHEBI:30620",
"CHEBI:19312",
"CHEBI:29048",
"CHEBI:11421"
],
"hmdb":[
"HMDB12247"
],
"inchi_key":[
"UWOCFOFVIBZJGH-YFKPBYRVSA-L"
],
"kegg.compound":[
"C03340"
],
"metanetx.chemical":[
"MNXM807"
],
"sabiork":[
"6562"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02120"
]
}
},
{
"id":"23dhmb_c",
"name":"(R)-2,3-Dihydroxy-3-methylbutanoate",
"compartment":"c",
"charge":-1,
"formula":"C5H9O4",
"notes":{
"original_bigg_ids":[
"_23dhmb_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhmb"
],
"biocyc":[
"META:CPD-13357"
],
"chebi":[
"CHEBI:10966",
"CHEBI:18645",
"CHEBI:49072",
"CHEBI:15684",
"CHEBI:305"
],
"hmdb":[
"HMDB12141"
],
"inchi_key":[
"JTEYKUFKXGDTEU-VKHMYHEASA-M"
],
"kegg.compound":[
"C04272"
],
"lipidmaps":[
"LMFA01050453"
],
"metanetx.chemical":[
"MNXM114097"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19030"
]
}
},
{
"id":"23dhmp_c",
"name":"(R)-2,3-Dihydroxy-3-methylpentanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H11O4",
"notes":{
"original_bigg_ids":[
"_23dhmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhmp"
],
"biocyc":[
"META:1-KETO-2-METHYLVALERATE"
],
"chebi":[
"CHEBI:18646",
"CHEBI:49258",
"CHEBI:306",
"CHEBI:27512"
],
"hmdb":[
"HMDB12140"
],
"inchi_key":[
"PDGXJDXVGMHUIR-UJURSFKZSA-M"
],
"kegg.compound":[
"C06007"
],
"lipidmaps":[
"LMFA01050452"
],
"metanetx.chemical":[
"MNXM1202"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19046"
]
}
},
{
"id":"25aics_c",
"name":"(S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate",
"compartment":"c",
"charge":-4,
"formula":"C13H15N4O12P",
"notes":{
"original_bigg_ids":[
"_25aics_c"
]
},
"annotation":{
"bigg.metabolite":[
"25aics"
],
"biocyc":[
"META:P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE"
],
"chebi":[
"CHEBI:78110",
"CHEBI:18319",
"CHEBI:58443",
"CHEBI:11028",
"CHEBI:18965",
"CHEBI:572"
],
"hmdb":[
"HMDB00797",
"HMDB06274"
],
"inchi_key":[
"NAQGHJTUZRHGAC-ZZZDFHIKSA-J"
],
"kegg.compound":[
"C04823"
],
"metanetx.chemical":[
"MNXM607"
],
"reactome.compound":[
"111399"
],
"sabiork":[
"1893"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19032"
]
}
},
{
"id":"25drapp_c",
"name":"2,5-Diamino-6-(ribosylamino)-4-(3H)-pyrimidinone 5'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C9H14N5O8P",
"notes":{
"original_bigg_ids":[
"_25drapp_c"
]
},
"annotation":{
"bigg.metabolite":[
"25drapp"
],
"biocyc":[
"META:DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR"
],
"chebi":[
"CHEBI:19368",
"CHEBI:59545",
"CHEBI:29114",
"CHEBI:58614",
"CHEBI:927",
"CHEBI:11446",
"CHEBI:59546"
],
"inchi_key":[
"OCLCLRXKNJCOJD-UMMCILCDSA-L"
],
"kegg.compound":[
"C01304"
],
"metanetx.chemical":[
"MNXM648"
],
"sbo":"SBO:0000247"
}
},
{
"id":"26dap_LL_c",
"name":"LL-2,6-Diaminoheptanedioate",
"compartment":"c",
"formula":"C7H14N2O4",
"notes":{
"original_bigg_ids":[
"_26dap_LL_c"
]
},
"annotation":{
"bigg.metabolite":[
"26dap_LL"
],
"biocyc":[
"META:LL-DIAMINOPIMELATE"
],
"chebi":[
"CHEBI:21428",
"CHEBI:6341",
"CHEBI:21429",
"CHEBI:16026",
"CHEBI:57609",
"CHEBI:13192",
"CHEBI:47031"
],
"hmdb":[
"HMDB01370"
],
"inchi_key":[
"GMKMEZVLHJARHF-WHFBIAKZSA-N"
],
"kegg.compound":[
"C00666"
],
"lipidmaps":[
"LMFA01170102"
],
"metanetx.chemical":[
"MNXM644"
],
"sabiork":[
"5171"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00504"
]
}
},
{
"id":"26dap__M_c",
"name":"Meso-2,6-Diaminoheptanedioate",
"compartment":"c",
"formula":"C7H14N2O4",
"notes":{
"original_bigg_ids":[
"_26dap_M_c"
]
},
"annotation":{
"bigg.metabolite":[
"26dap__M"
],
"biocyc":[
"META:MESO-DIAMINOPIMELATE"
],
"chebi":[
"CHEBI:40838",
"CHEBI:12823",
"CHEBI:30308",
"CHEBI:57791",
"CHEBI:10598",
"CHEBI:25203",
"CHEBI:12825",
"CHEBI:12822",
"CHEBI:25204",
"CHEBI:16488"
],
"inchi_key":[
"GMKMEZVLHJARHF-SYDPRGILSA-N"
],
"kegg.compound":[
"C00680"
],
"metanetx.chemical":[
"MNXM529"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00516"
]
}
},
{
"id":"2agpe120_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)",
"compartment":"c",
"formula":"C17H36NO7P1",
"notes":{
"original_bigg_ids":[
"_2agpe120_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe120"
],
"biocyc":[
"META:CPD0-2178"
],
"inchi_key":[
"NPAZKTOOMVQLIH-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM34808"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26439"
],
"slm":[
"000043349"
]
}
},
{
"id":"2agpe140_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)",
"compartment":"c",
"formula":"C19H40NO7P1",
"notes":{
"original_bigg_ids":[
"_2agpe140_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe140"
],
"biocyc":[
"META:CPD0-2165"
],
"hmdb":[
"HMDB11470"
],
"inchi_key":[
"DDUZNLUWXLYPCP-UHFFFAOYSA-N"
],
"lipidmaps":[
"LMGP02050033"
],
"metanetx.chemical":[
"MNXM34809"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26435"
],
"slm":[
"000043363"
]
}
},
{
"id":"2agpe141_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)",
"compartment":"c",
"formula":"C19H38NO7P1",
"notes":{
"original_bigg_ids":[
"_2agpe141_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe141"
],
"metanetx.chemical":[
"MNXM3447"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe160_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)",
"compartment":"c",
"formula":"C21H44NO7P1",
"notes":{
"original_bigg_ids":[
"_2agpe160_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe160"
],
"biocyc":[
"META:CPD0-2177"
],
"chebi":[
"CHEBI:131743",
"CHEBI:132926"
],
"hmdb":[
"HMDB11473"
],
"inchi_key":[
"CKPBBEOJHAPPBT-HXUWFJFHSA-N"
],
"lipidmaps":[
"LMGP02050036"
],
"metanetx.chemical":[
"MNXM34810"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15339",
"cpd26438"
],
"slm":[
"000043354"
]
}
},
{
"id":"2agpg181_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C24H46O9P1",
"notes":{
"original_bigg_ids":[
"_2agpg181_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg181"
],
"metanetx.chemical":[
"MNXM3455"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4pasp_c",
"name":"4-Phospho-L-aspartate",
"compartment":"c",
"charge":-2,
"formula":"C4H6NO7P",
"notes":{
"original_bigg_ids":[
"_4pasp_c"
]
},
"annotation":{
"bigg.metabolite":[
"4pasp"
],
"biocyc":[
"META:L-BETA-ASPARTYL-P"
],
"chebi":[
"CHEBI:13062",
"CHEBI:12042",
"CHEBI:20471",
"CHEBI:21246",
"CHEBI:1925",
"CHEBI:20472",
"CHEBI:30407",
"CHEBI:15836",
"CHEBI:57535"
],
"hmdb":[
"HMDB12250"
],
"inchi_key":[
"IXZNKTPIYKDIGG-REOHCLBHSA-L"
],
"kegg.compound":[
"C03082"
],
"metanetx.chemical":[
"MNXM1177"
],
"sabiork":[
"1733"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01977"
]
}
},
{
"id":"2agpe161_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)",
"compartment":"c",
"formula":"C21H42NO7P1",
"notes":{
"original_bigg_ids":[
"_2agpe161_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe161"
],
"metanetx.chemical":[
"MNXM3448"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4per_c",
"name":"4-Phospho-D-erythronate",
"compartment":"c",
"charge":-3,
"formula":"C4H6O8P",
"notes":{
"original_bigg_ids":[
"_4per_c"
]
},
"annotation":{
"bigg.metabolite":[
"4per"
],
"biocyc":[
"META:ERYTHRONATE-4P"
],
"chebi":[
"CHEBI:49055",
"CHEBI:58766",
"CHEBI:41926",
"CHEBI:49003",
"CHEBI:1924"
],
"inchi_key":[
"ZCZXOHUILRHRQJ-PWNYCUMCSA-K"
],
"kegg.compound":[
"C03393"
],
"metanetx.chemical":[
"MNXM1407"
],
"sabiork":[
"6597"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02147"
]
}
},
{
"id":"2agpe180_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)",
"compartment":"c",
"formula":"C23H48NO7P1",
"notes":{
"original_bigg_ids":[
"_2agpe180_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe180"
],
"biocyc":[
"META:CPD0-2223"
],
"chebi":[
"CHEBI:133144",
"CHEBI:133145"
],
"hmdb":[
"HMDB11129"
],
"inchi_key":[
"KIHAGWUUUHJRMS-JOCHJYFZSA-N"
],
"lipidmaps":[
"LMGP02050038"
],
"metanetx.chemical":[
"MNXM34811"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15341",
"cpd26450"
],
"slm":[
"000043358"
]
}
},
{
"id":"4ppan_c",
"name":"D-4'-Phosphopantothenate",
"compartment":"c",
"charge":-3,
"formula":"C9H15NO8P",
"notes":{
"original_bigg_ids":[
"_4ppan_c"
]
},
"annotation":{
"bigg.metabolite":[
"4ppan"
],
"biocyc":[
"META:4-P-PANTOTHENATE"
],
"chebi":[
"CHEBI:20891",
"CHEBI:15905",
"CHEBI:4082",
"CHEBI:12886",
"CHEBI:18702",
"CHEBI:10986"
],
"hmdb":[
"HMDB01016",
"HMDB62700"
],
"inchi_key":[
"XHFVGHPGDLDEQO-ZETCQYMHSA-K"
],
"kegg.compound":[
"C03492"
],
"metanetx.chemical":[
"MNXM415"
],
"reactome.compound":[
"196786"
],
"sabiork":[
"6663"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02201"
]
}
},
{
"id":"2agpe181_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)",
"compartment":"c",
"formula":"C23H46NO7P1",
"notes":{
"original_bigg_ids":[
"_2agpe181_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe181"
],
"metanetx.chemical":[
"MNXM3449"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4ppcys_c",
"name":"N-((R)-4-Phosphopantothenoyl)-L-cysteine",
"compartment":"c",
"charge":-3,
"formula":"C12H20N2O9PS",
"notes":{
"original_bigg_ids":[
"_4ppcys_c"
]
},
"annotation":{
"bigg.metabolite":[
"4ppcys"
],
"biocyc":[
"META:R-4-PHOSPHOPANTOTHENOYL-L-CYSTEINE"
],
"chebi":[
"CHEBI:15769",
"CHEBI:12438",
"CHEBI:10987",
"CHEBI:57507",
"CHEBI:59458",
"CHEBI:328",
"CHEBI:21461"
],
"hmdb":[
"HMDB01117"
],
"inchi_key":[
"XQYALQVLCNHCFT-CBAPKCEASA-K"
],
"kegg.compound":[
"C04352"
],
"metanetx.chemical":[
"MNXM483"
],
"reactome.compound":[
"196834"
],
"sabiork":[
"7255"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02666"
]
}
},
{
"id":"2agpg120_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C18H36O9P1",
"notes":{
"original_bigg_ids":[
"_2agpg120_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg120"
],
"metanetx.chemical":[
"MNXM3450"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4r5au_c",
"name":"4-(1-D-Ribitylamino)-5-aminouracil",
"compartment":"c",
"formula":"C9H16N4O6",
"notes":{
"original_bigg_ids":[
"_4r5au_c"
]
},
"annotation":{
"bigg.metabolite":[
"4r5au"
],
"biocyc":[
"META:AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE"
],
"chebi":[
"CHEBI:20283",
"CHEBI:11929",
"CHEBI:57573",
"CHEBI:1761",
"CHEBI:15934",
"CHEBI:52403"
],
"inchi_key":[
"XKQZIXVJVUPORE-RPDRRWSUSA-N"
],
"kegg.compound":[
"C04732"
],
"metanetx.chemical":[
"MNXM791"
],
"sabiork":[
"7525"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29668",
"cpd02882"
]
}
},
{
"id":"2agpg140_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C20H40O9P1",
"notes":{
"original_bigg_ids":[
"_2agpg140_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg140"
],
"biocyc":[
"META:CPD0-2173"
],
"inchi_key":[
"NHYJQQUDLXESED-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM34739"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26437"
],
"slm":[
"000046424"
]
}
},
{
"id":"5aizc_c",
"name":"5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate",
"compartment":"c",
"charge":-3,
"formula":"C9H11N3O9P",
"notes":{
"original_bigg_ids":[
"_5aizc_c"
]
},
"annotation":{
"bigg.metabolite":[
"5aizc"
],
"biocyc":[
"META:PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE"
],
"chebi":[
"CHEBI:77657",
"CHEBI:12103",
"CHEBI:575",
"CHEBI:18968",
"CHEBI:58564",
"CHEBI:28413",
"CHEBI:41336"
],
"hmdb":[
"HMDB06273",
"HMDB62424"
],
"inchi_key":[
"XFVULMDJZXYMSG-ZIYNGMLESA-L"
],
"kegg.compound":[
"C04751"
],
"metanetx.chemical":[
"MNXM507"
],
"reactome.compound":[
"111395"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02893"
]
}
},
{
"id":"2agpg141_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C20H38O9P1",
"notes":{
"original_bigg_ids":[
"_2agpg141_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg141"
],
"metanetx.chemical":[
"MNXM3452"
],
"sbo":"SBO:0000247"
}
},
{
"id":"5aop_c",
"name":"5-Amino-4-oxopentanoate",
"compartment":"c",
"formula":"C5H9NO3",
"notes":{
"original_bigg_ids":[
"_5aop_c"
]
},
"annotation":{
"bigg.metabolite":[
"5aop"
],
"biocyc":[
"META:5-AMINO-LEVULINATE"
],
"chebi":[
"CHEBI:20547",
"CHEBI:356416",
"CHEBI:132970",
"CHEBI:12109",
"CHEBI:2034",
"CHEBI:17549"
],
"hmdb":[
"HMDB01149"
],
"inchi_key":[
"ZGXJTSGNIOSYLO-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00430"
],
"kegg.drug":[
"D07567"
],
"lipidmaps":[
"LMFA01100055"
],
"metanetx.chemical":[
"MNXM405"
],
"reactome.compound":[
"189489",
"189466"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00338"
]
}
},
{
"id":"2ahbut_c",
"name":"(S)-2-Aceto-2-hydroxybutanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O4",
"notes":{
"original_bigg_ids":[
"_2ahbut_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ahbut"
],
"biocyc":[
"META:2-ACETO-2-HYDROXY-BUTYRATE"
],
"chebi":[
"CHEBI:27681",
"CHEBI:49256",
"CHEBI:18730",
"CHEBI:373"
],
"hmdb":[
"HMDB06854",
"HMDB06900"
],
"inchi_key":[
"VUQLHQFKACOHNZ-LURJTMIESA-M"
],
"kegg.compound":[
"C06006"
],
"lipidmaps":[
"LMFA01050383"
],
"metanetx.chemical":[
"MNXM114220"
],
"sabiork":[
"2852"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19045"
]
}
},
{
"id":"2agpg160_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C22H44O9P1",
"notes":{
"original_bigg_ids":[
"_2agpg160_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg160"
],
"biocyc":[
"META:CPD-8363"
],
"inchi_key":[
"ODJYINYQGFIIRK-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM34740"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25200"
],
"slm":[
"000046415"
]
}
},
{
"id":"2cpr5p_c",
"name":"1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C12H13NO9P",
"notes":{
"original_bigg_ids":[
"_2cpr5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2cpr5p"
],
"biocyc":[
"META:CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P"
],
"chebi":[
"CHEBI:11186",
"CHEBI:566",
"CHEBI:18959",
"CHEBI:565",
"CHEBI:29112",
"CHEBI:58613",
"CHEBI:28625"
],
"inchi_key":[
"QKMBYNRMPRKVTO-MNOVXSKESA-K"
],
"kegg.compound":[
"C01302"
],
"metanetx.chemical":[
"MNXM1455"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00956"
]
}
},
{
"id":"5aprbu_c",
"name":"5-Amino-6-(5'-phosphoribitylamino)uracil",
"compartment":"c",
"charge":-2,
"formula":"C9H15N4O9P",
"notes":{
"original_bigg_ids":[
"_5aprbu_c"
]
},
"annotation":{
"bigg.metabolite":[
"5aprbu"
],
"biocyc":[
"META:CPD-1086"
],
"chebi":[
"CHEBI:2031",
"CHEBI:58421",
"CHEBI:12107",
"CHEBI:18247"
],
"hmdb":[
"HMDB03841"
],
"inchi_key":[
"RQRINYISXYAZKL-RPDRRWSUSA-L"
],
"kegg.compound":[
"C04454"
],
"metanetx.chemical":[
"MNXM1178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02720"
]
}
},
{
"id":"5apru_c",
"name":"5-Amino-6-(5'-phosphoribosylamino)uracil",
"compartment":"c",
"charge":-2,
"formula":"C9H13N4O9P",
"notes":{
"original_bigg_ids":[
"_5apru_c"
]
},
"annotation":{
"bigg.metabolite":[
"5apru"
],
"biocyc":[
"META:CPD-602"
],
"chebi":[
"CHEBI:12108",
"CHEBI:58453",
"CHEBI:18337",
"CHEBI:2032",
"CHEBI:20546",
"CHEBI:59550",
"CHEBI:59551"
],
"inchi_key":[
"LZEXYCAGPMYXLX-UMMCILCDSA-L"
],
"kegg.compound":[
"C01268"
],
"metanetx.chemical":[
"MNXM1532"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00931"
]
}
},
{
"id":"2agpg161_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C22H42O9P1",
"notes":{
"original_bigg_ids":[
"_2agpg161_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg161"
],
"metanetx.chemical":[
"MNXM3453"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2dda7p_c",
"name":"2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C7H10O10P",
"notes":{
"original_bigg_ids":[
"_2dda7p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dda7p"
],
"biocyc":[
"META:3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P"
],
"chebi":[
"CHEBI:1053",
"CHEBI:18150",
"CHEBI:11544",
"CHEBI:11785",
"CHEBI:19523",
"CHEBI:58394",
"CHEBI:20003",
"CHEBI:11786",
"CHEBI:29477"
],
"inchi_key":[
"PJWIPEXIFFQAQZ-PUFIMZNGSA-K"
],
"kegg.compound":[
"C04691"
],
"metanetx.chemical":[
"MNXM1219"
],
"reactome.compound":[
"964909"
],
"sabiork":[
"1828"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02857"
]
}
},
{
"id":"2agpg180_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C24H48O9P1",
"notes":{
"original_bigg_ids":[
"_2agpg180_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg180"
],
"biocyc":[
"META:CPD0-2133"
],
"hmdb":[
"HMDB61703"
],
"inchi_key":[
"ZYKIFISVQNGKFE-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM150642"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26427"
]
}
},
{
"id":"2dhp_c",
"name":"2-Dehydropantoate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O4",
"notes":{
"original_bigg_ids":[
"_2dhp_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dhp"
],
"biocyc":[
"META:2-DEHYDROPANTOATE"
],
"chebi":[
"CHEBI:1071",
"CHEBI:11561",
"CHEBI:19545",
"CHEBI:17094"
],
"inchi_key":[
"PKVVTUWHANFMQC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00966"
],
"metanetx.chemical":[
"MNXM959"
],
"sabiork":[
"5342"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00712"
]
}
},
{
"id":"5drib_c",
"name":"5'-deoxyribose",
"compartment":"c",
"formula":"C5H10O4",
"notes":{
"original_bigg_ids":[
"_5drib_c"
]
},
"annotation":{
"bigg.metabolite":[
"5drib"
],
"biocyc":[
"META:CPD0-2167"
],
"chebi":[
"CHEBI:62012"
],
"inchi_key":[
"WDRISBUVHBMJEF-MROZADKFSA-N"
],
"metanetx.chemical":[
"MNXM4391"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd17002",
"cpd15380"
]
}
},
{
"id":"anhm4p_c",
"name":"1,6-anhydrous-N-Acetylmuramyl-tetrapeptide",
"compartment":"c",
"charge":-2,
"formula":"C29H44N6O15",
"notes":{
"original_bigg_ids":[
"anhm4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhm4p"
],
"inchi_key":[
"OUWAMZWZTFUVMV-NPLPHQDTSA-L"
],
"metanetx.chemical":[
"MNXM5405"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15401"
]
}
},
{
"id":"5fthf_c",
"name":"5-Formyltetrahydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C20H21N7O7",
"notes":{
"original_bigg_ids":[
"_5fthf_c"
]
},
"annotation":{
"bigg.metabolite":[
"5fthf"
],
"biocyc":[
"META:5-FORMYL-THF"
],
"chebi":[
"CHEBI:2057",
"CHEBI:18607",
"CHEBI:63606",
"CHEBI:12127",
"CHEBI:15640",
"CHEBI:65340",
"CHEBI:57457"
],
"hmdb":[
"HMDB06206",
"HMDB01562",
"HMDB62757"
],
"inchi_key":[
"VVIAGPKUTFNRDU-STQMWFEESA-L"
],
"kegg.compound":[
"C03479"
],
"kegg.drug":[
"D07986"
],
"metanetx.chemical":[
"MNXM1392"
],
"sabiork":[
"6654"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02197"
]
}
},
{
"id":"2dmmql8_c",
"name":"2-Demethylmenaquinol 8",
"compartment":"c",
"formula":"C50H72O2",
"notes":{
"original_bigg_ids":[
"_2dmmql8_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dmmql8"
],
"biocyc":[
"META:CPD-12115"
],
"chebi":[
"CHEBI:61873"
],
"inchi_key":[
"FGYPGICSXJEKCG-AENDIINCSA-N"
],
"metanetx.chemical":[
"MNXM558"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15353"
]
}
},
{
"id":"2fe1s_c",
"name":"[2Fe-1S] desulfurated iron-sulfur cluster",
"compartment":"c",
"charge":2,
"formula":"SFe2",
"notes":{
"original_bigg_ids":[
"_2fe1s_c"
]
},
"annotation":{
"bigg.metabolite":[
"2fe1s"
],
"metanetx.chemical":[
"MNXM147395"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2fe2s_c",
"name":"[2Fe-2S] iron-sulfur cluster",
"compartment":"c",
"charge":2,
"formula":"S2Fe2",
"notes":{
"original_bigg_ids":[
"_2fe2s_c"
]
},
"annotation":{
"bigg.metabolite":[
"2fe2s"
],
"chebi":[
"CHEBI:21134",
"CHEBI:64605",
"CHEBI:49600",
"CHEBI:49601"
],
"metanetx.chemical":[
"MNXM151647"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd24604"
]
}
},
{
"id":"2ippm_c",
"name":"2-Isopropylmaleate",
"compartment":"c",
"charge":-2,
"formula":"C7H8O4",
"notes":{
"original_bigg_ids":[
"_2ippm_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ippm"
],
"biocyc":[
"META:CPD-9451"
],
"chebi":[
"CHEBI:17275",
"CHEBI:19668",
"CHEBI:11604",
"CHEBI:58085",
"CHEBI:1179"
],
"hmdb":[
"HMDB12241"
],
"inchi_key":[
"NJMGRJLQRLFQQX-HYXAFXHYSA-L"
],
"kegg.compound":[
"C02631"
],
"metanetx.chemical":[
"MNXM1706"
],
"sabiork":[
"2472"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01710"
]
}
},
{
"id":"anth_c",
"name":"Anthranilate",
"compartment":"c",
"charge":-1,
"formula":"C7H6NO2",
"notes":{
"original_bigg_ids":[
"anth_c"
]
},
"annotation":{
"bigg.metabolite":[
"anth"
],
"biocyc":[
"META:ANTHRANILATE"
],
"chebi":[
"CHEBI:30754",
"CHEBI:22575",
"CHEBI:16567",
"CHEBI:40980",
"CHEBI:22578",
"CHEBI:13841",
"CHEBI:22577",
"CHEBI:2757"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/ec511e59-d2cf-482d-ae9f-7f4dd74818c2"
],
"hmdb":[
"HMDB01123"
],
"inchi_key":[
"RWZYAGGXGHYGMB-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00108"
],
"metanetx.chemical":[
"MNXM188"
],
"sabiork":[
"5005"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00093"
]
}
},
{
"id":"apoACP_c",
"name":"Apoprotein [acyl carrier protein]",
"compartment":"c",
"formula":"RHO",
"notes":{
"original_bigg_ids":[
"apoACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"apoACP"
],
"metanetx.chemical":[
"MNXM2214"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29672",
"cpd12370"
]
}
},
{
"id":"appl_c",
"name":"1-Aminopropan-2-ol",
"compartment":"c",
"charge":1,
"formula":"C3H10NO",
"notes":{
"original_bigg_ids":[
"appl_c"
]
},
"annotation":{
"bigg.metabolite":[
"appl"
],
"biocyc":[
"META:1-AMINO-PROPAN-2-OL"
],
"chebi":[
"CHEBI:610",
"CHEBI:18642",
"CHEBI:42677",
"CHEBI:15675",
"CHEBI:10963",
"CHEBI:19030",
"CHEBI:303"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/d0a37a0c-a6b5-45b9-b8cd-3d633776e4a3"
],
"hmdb":[
"HMDB12136"
],
"inchi_key":[
"HXKKHQJGJAFBHI-GSVOUGTGSA-O"
],
"kegg.compound":[
"C05771",
"C03194"
],
"metanetx.chemical":[
"MNXM1029"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19039",
"cpd02039"
]
}
},
{
"id":"applp_c",
"name":"D-1-Aminopropan-2-ol O-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C3H9NO4P",
"notes":{
"original_bigg_ids":[
"applp_c"
]
},
"annotation":{
"bigg.metabolite":[
"applp"
],
"biocyc":[
"META:R-1-AMINOPROPAN-2-YL-PHOSPHATE"
],
"chebi":[
"CHEBI:58563",
"CHEBI:4076",
"CHEBI:20886",
"CHEBI:28390"
],
"inchi_key":[
"YBOLZUJJGUZUDC-GSVOUGTGSA-M"
],
"kegg.compound":[
"C04122"
],
"metanetx.chemical":[
"MNXM1697"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02547"
]
}
},
{
"id":"5hbzid_c",
"name":"5-hydroxybenzimidazole",
"compartment":"c",
"formula":"C7H6N2O",
"notes":{
"original_bigg_ids":[
"_5hbzid_c"
]
},
"annotation":{
"bigg.metabolite":[
"5hbzid"
],
"biocyc":[
"META:CPD-18497"
],
"metanetx.chemical":[
"MNXM6924"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15825"
]
}
},
{
"id":"aps_c",
"name":"Adenosine 5'-phosphosulfate",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O10PS",
"notes":{
"original_bigg_ids":[
"aps_c"
]
},
"annotation":{
"bigg.metabolite":[
"aps"
],
"biocyc":[
"META:APS"
],
"chebi":[
"CHEBI:22247",
"CHEBI:58243",
"CHEBI:13743",
"CHEBI:2486",
"CHEBI:13741",
"CHEBI:12059",
"CHEBI:17709",
"CHEBI:40562"
],
"hmdb":[
"HMDB01003"
],
"inchi_key":[
"IRLPACMLTUPBCL-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00224"
],
"metanetx.chemical":[
"MNXM287"
],
"reactome.compound":[
"174370"
],
"sabiork":[
"1803"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00193"
]
}
},
{
"id":"5mcsn_c",
"name":"5-Methylcytosine",
"compartment":"c",
"formula":"C5H7N3O",
"notes":{
"original_bigg_ids":[
"_5mcsn_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mcsn"
],
"biocyc":[
"META:CPD0-2018"
],
"chebi":[
"CHEBI:20608",
"CHEBI:85013",
"CHEBI:27551",
"CHEBI:2094"
],
"hmdb":[
"HMDB02894"
],
"inchi_key":[
"LRSASMSXMSNRBT-UHFFFAOYSA-N"
],
"kegg.compound":[
"C02376"
],
"metanetx.chemical":[
"MNXM3509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01587"
]
}
},
{
"id":"ara5p_c",
"name":"D-Arabinose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"ara5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"ara5p"
],
"biocyc":[
"META:ARABINOSE-5P"
],
"chebi":[
"CHEBI:12916",
"CHEBI:79058",
"CHEBI:57693",
"CHEBI:16241",
"CHEBI:4104",
"CHEBI:20915"
],
"hmdb":[
"HMDB11734"
],
"inchi_key":[
"PPQRONHOSHZGFQ-WDCZJNDASA-L"
],
"kegg.compound":[
"C01112"
],
"metanetx.chemical":[
"MNXM1184"
],
"sabiork":[
"25303",
"1478"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00817"
]
}
},
{
"id":"2m3osuc_c",
"name":"2-methyl-3-oxosuccinate",
"compartment":"c",
"charge":-2,
"formula":"C5H4O5",
"notes":{
"original_bigg_ids":[
"_2m3osuc_c"
]
},
"annotation":{
"bigg.metabolite":[
"2m3osuc"
],
"chebi":[
"CHEBI:58851",
"CHEBI:50793"
],
"inchi_key":[
"CXJNNMFPXAHDPF-UHFFFAOYSA-L"
],
"metanetx.chemical":[
"MNXM2068"
],
"sbo":"SBO:0000247"
}
},
{
"id":"arg__L_c",
"name":"L-Arginine",
"compartment":"c",
"charge":1,
"formula":"C6H15N4O2",
"notes":{
"original_bigg_ids":[
"arg_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"arg__L"
],
"biocyc":[
"META:ARG"
],
"chebi":[
"CHEBI:32683",
"CHEBI:22616",
"CHEBI:2643",
"CHEBI:32681",
"CHEBI:13077",
"CHEBI:32682",
"CHEBI:16467",
"CHEBI:21235",
"CHEBI:42927",
"CHEBI:6185",
"CHEBI:32696",
"CHEBI:32695",
"CHEBI:29016",
"CHEBI:32697",
"CHEBI:133495"
],
"hmdb":[
"HMDB62762",
"HMDB00517"
],
"inchi_key":[
"ODKSFYDXXFIFQN-BYPYZUCNSA-O"
],
"kegg.compound":[
"C02385",
"C00062"
],
"kegg.drug":[
"D02982"
],
"metanetx.chemical":[
"MNXM70"
],
"reactome.compound":[
"351977",
"29468",
"374064",
"113530"
],
"sabiork":[
"2410",
"23080",
"80"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00051",
"cpd19021"
]
}
},
{
"id":"2mahmp_c",
"name":"2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C6H8N3O7P2",
"notes":{
"original_bigg_ids":[
"_2mahmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mahmp"
],
"biocyc":[
"META:AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP"
],
"chebi":[
"CHEBI:16629",
"CHEBI:29079",
"CHEBI:19684",
"CHEBI:20308",
"CHEBI:11612",
"CHEBI:57841",
"CHEBI:11953",
"CHEBI:1194"
],
"inchi_key":[
"AGQJQCFEPUVXNK-UHFFFAOYSA-K"
],
"kegg.compound":[
"C04752"
],
"metanetx.chemical":[
"MNXM1135"
],
"sabiork":[
"1832"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02894"
]
}
},
{
"id":"5mdr1p_c",
"name":"5-Methylthio-5-deoxy-D-ribose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O7PS",
"notes":{
"original_bigg_ids":[
"_5mdr1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mdr1p"
],
"biocyc":[
"META:CPD-444"
],
"chebi":[
"CHEBI:20614",
"CHEBI:12769",
"CHEBI:12767",
"CHEBI:20616",
"CHEBI:30310",
"CHEBI:30311",
"CHEBI:58533",
"CHEBI:2102",
"CHEBI:27859",
"CHEBI:12770",
"CHEBI:30309"
],
"inchi_key":[
"JTFITTQBRJDSTL-KVTDHHQDSA-L"
],
"kegg.compound":[
"C04188"
],
"metanetx.chemical":[
"MNXM407"
],
"reactome.compound":[
"1237165"
],
"sabiork":[
"1642"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02574",
"cpd29669"
]
}
},
{
"id":"argsuc_c",
"name":"N(omega)-(L-Arginino)succinate",
"compartment":"c",
"charge":-1,
"formula":"C10H17N4O6",
"notes":{
"original_bigg_ids":[
"argsuc_c"
]
},
"annotation":{
"bigg.metabolite":[
"argsuc"
],
"biocyc":[
"META:L-ARGININO-SUCCINATE"
],
"chebi":[
"CHEBI:7098",
"CHEBI:57472",
"CHEBI:15682",
"CHEBI:10960",
"CHEBI:21475"
],
"hmdb":[
"HMDB00052",
"HMDB01006"
],
"inchi_key":[
"KDZOASGQNOPSCU-ZBHICJROSA-M"
],
"kegg.compound":[
"C03406"
],
"metanetx.chemical":[
"MNXM722743"
],
"reactome.compound":[
"34575"
],
"sabiork":[
"4057"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02152",
"cpd29673"
]
}
},
{
"id":"argtrna_c",
"name":"L-Arginyl-tRNA(Arg)",
"compartment":"c",
"charge":2,
"formula":"C6H14N4OR",
"notes":{
"original_bigg_ids":[
"argtrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"argtrna"
],
"chebi":[
"CHEBI:18366",
"CHEBI:13079",
"CHEBI:13080",
"CHEBI:6189"
],
"kegg.compound":[
"C02163"
],
"metanetx.chemical":[
"MNXM89870"
],
"reactome.compound":[
"379720",
"379708"
],
"sabiork":[
"3858"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12036"
]
}
},
{
"id":"asn__L_c",
"name":"L-Asparagine",
"compartment":"c",
"formula":"C4H8N2O3",
"notes":{
"original_bigg_ids":[
"asn_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"asn__L"
],
"biocyc":[
"META:ASN"
],
"chebi":[
"CHEBI:6191",
"CHEBI:22653",
"CHEBI:32651",
"CHEBI:58048",
"CHEBI:40902",
"CHEBI:21242",
"CHEBI:32661",
"CHEBI:13083",
"CHEBI:17196",
"CHEBI:32660",
"CHEBI:32650"
],
"hmdb":[
"HMDB00168"
],
"inchi_key":[
"DCXYFEDJOCDNAF-REOHCLBHSA-N"
],
"kegg.compound":[
"C16438",
"C00152"
],
"metanetx.chemical":[
"MNXM147"
],
"reactome.compound":[
"29642",
"379703"
],
"sabiork":[
"21052",
"72"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00132",
"cpd15142"
]
}
},
{
"id":"5mdru1p_c",
"name":"5-Methylthio-5-deoxy-D-ribulose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O7PS",
"notes":{
"original_bigg_ids":[
"_5mdru1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mdru1p"
],
"biocyc":[
"META:CPD-1063"
],
"chebi":[
"CHEBI:20615",
"CHEBI:44141",
"CHEBI:58548",
"CHEBI:2100",
"CHEBI:28096",
"CHEBI:12768"
],
"hmdb":[
"HMDB62647",
"HMDB01299"
],
"inchi_key":[
"CNSJRYUMVMWNMC-RITPCOANSA-L"
],
"kegg.compound":[
"C04582"
],
"metanetx.chemical":[
"MNXM522"
],
"reactome.compound":[
"1237107"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02791"
]
}
},
{
"id":"asntrna_c",
"name":"L-Asparaginyl-tRNA(Asn)",
"compartment":"c",
"charge":1,
"formula":"C14H24N2O12PR2",
"notes":{
"original_bigg_ids":[
"asntrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"asntrna"
],
"chebi":[
"CHEBI:13084",
"CHEBI:6192",
"CHEBI:29265",
"CHEBI:13251"
],
"kegg.compound":[
"C03402"
],
"metanetx.chemical":[
"MNXM89761"
],
"reactome.compound":[
"379718",
"379728"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16182",
"cpd12313"
]
}
},
{
"id":"5mta_c",
"name":"5-Methylthioadenosine",
"compartment":"c",
"formula":"C11H15N5O3S",
"notes":{
"original_bigg_ids":[
"_5mta_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mta"
],
"biocyc":[
"META:5-METHYLTHIOADENOSINE"
],
"chebi":[
"CHEBI:1966",
"CHEBI:18175",
"CHEBI:12064",
"CHEBI:14605",
"CHEBI:20494",
"CHEBI:12055",
"CHEBI:20491",
"CHEBI:17509",
"CHEBI:44181",
"CHEBI:1986",
"CHEBI:12771"
],
"hmdb":[
"HMDB01173"
],
"inchi_key":[
"WUUGFSXJNOTRMR-IOSLPCCCSA-N"
],
"kegg.compound":[
"C00170"
],
"metanetx.chemical":[
"MNXM150"
],
"reactome.compound":[
"5279412",
"353106"
],
"sabiork":[
"1960"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00147"
]
}
},
{
"id":"aso3_c",
"name":"Arsenite",
"compartment":"c",
"charge":-3,
"formula":"AsO3",
"notes":{
"original_bigg_ids":[
"aso3_c"
]
},
"annotation":{
"bigg.metabolite":[
"aso3"
],
"biocyc":[
"META:CPD0-2040",
"META:CPD-763"
],
"chebi":[
"CHEBI:2846",
"CHEBI:22635",
"CHEBI:49899",
"CHEBI:13857",
"CHEBI:49900",
"CHEBI:29243",
"CHEBI:29866",
"CHEBI:29242"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/42d95b9b-3aca-45eb-a99d-ef775cb20524"
],
"hmdb":[
"HMDB11620"
],
"inchi_key":[
"AQLMHYSWFMLWBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06697"
],
"metanetx.chemical":[
"MNXM658"
],
"reactome.compound":[
"5696216"
],
"sabiork":[
"8854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26385",
"cpd04098"
]
}
},
{
"id":"5mthf_c",
"name":"5-Methyltetrahydrofolate",
"compartment":"c",
"charge":-1,
"formula":"C20H24N7O6",
"notes":{
"original_bigg_ids":[
"_5mthf_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mthf"
],
"biocyc":[
"META:5-METHYL-THF"
],
"chebi":[
"CHEBI:18608",
"CHEBI:12146",
"CHEBI:136009",
"CHEBI:2097",
"CHEBI:20612",
"CHEBI:15641"
],
"hmdb":[
"HMDB01396"
],
"inchi_key":[
"ZNOVTXRBGFNYRX-STQMWFEESA-L"
],
"kegg.compound":[
"C00440"
],
"kegg.drug":[
"D09353"
],
"metanetx.chemical":[
"MNXM318"
],
"reactome.compound":[
"200709",
"200665"
],
"sabiork":[
"2051"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00345"
]
}
},
{
"id":"2mbcoa_c",
"name":"2-Methylbutanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C26H40N7O17P3S",
"notes":{
"original_bigg_ids":[
"_2mbcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mbcoa"
],
"biocyc":[
"META:2-METHYL-BUTYRYL-COA"
],
"chebi":[
"CHEBI:11616",
"CHEBI:57336",
"CHEBI:1201",
"CHEBI:19693",
"CHEBI:15477"
],
"hmdb":[
"HMDB01041",
"HMDB02021",
"HMDB02253",
"HMDB02191"
],
"inchi_key":[
"LYNVNYDEQMMNMZ-XGXNYEOVSA-J"
],
"kegg.compound":[
"C01033"
],
"lipidmaps":[
"LMFA07050190"
],
"metanetx.chemical":[
"MNXM569"
],
"reactome.compound":[
"70718"
],
"sabiork":[
"2221"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00760"
]
}
},
{
"id":"aso4_c",
"name":"Arsenate",
"compartment":"c",
"charge":-3,
"formula":"AsO4",
"notes":{
"original_bigg_ids":[
"aso4_c"
]
},
"annotation":{
"bigg.metabolite":[
"aso4"
],
"biocyc":[
"META:ARSENATE"
],
"chebi":[
"CHEBI:48600",
"CHEBI:29125",
"CHEBI:22631",
"CHEBI:48597",
"CHEBI:2843",
"CHEBI:13856",
"CHEBI:2844",
"CHEBI:22629",
"CHEBI:18231"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/090d280e-0ebf-4fab-bb54-3a3933e7a5fe"
],
"hmdb":[
"HMDB12190"
],
"inchi_key":[
"DJHGAFSJWGLOIV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01478",
"C11215"
],
"metanetx.chemical":[
"MNXM970"
],
"sabiork":[
"20046"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01048"
]
}
},
{
"id":"asp__L_c",
"name":"L-Aspartate",
"compartment":"c",
"charge":-1,
"formula":"C4H6NO4",
"notes":{
"original_bigg_ids":[
"asp_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"asp__L"
],
"biocyc":[
"META:L-ASPARTATE"
],
"chebi":[
"CHEBI:17053",
"CHEBI:22659",
"CHEBI:6193",
"CHEBI:21247",
"CHEBI:29993",
"CHEBI:40942",
"CHEBI:29995",
"CHEBI:22660",
"CHEBI:29991",
"CHEBI:132943",
"CHEBI:35391",
"CHEBI:13085",
"CHEBI:40913",
"CHEBI:21244",
"CHEBI:40853",
"CHEBI:29992",
"CHEBI:40900"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4b0cdcb0-137a-4ddc-8e5c-2b55ea238c15"
],
"hmdb":[
"HMDB62186",
"HMDB62501",
"HMDB00191"
],
"inchi_key":[
"CKLJMWTZIZZHCS-REOHCLBHSA-M"
],
"kegg.compound":[
"C00049",
"C16433"
],
"kegg.drug":[
"D00013"
],
"metanetx.chemical":[
"MNXM42"
],
"reactome.compound":[
"113553",
"29448"
],
"sabiork":[
"71"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00041",
"cpd19181"
]
}
},
{
"id":"5pg35pg_c",
"name":"5-Phosphoguanylyl(3->5)guanosine",
"compartment":"c",
"charge":-3,
"formula":"C20H23N10O15P2",
"notes":{
"original_bigg_ids":[
"_5pg35pg_c"
]
},
"annotation":{
"bigg.metabolite":[
"5pg35pg"
],
"biocyc":[
"META:L-DI-GMP"
],
"chebi":[
"CHEBI:48622",
"CHEBI:58754"
],
"inchi_key":[
"ZEHOHLFQOXAZHX-MHARETSRSA-K"
],
"kegg.compound":[
"C18076"
],
"metanetx.chemical":[
"MNXM4772"
],
"sabiork":[
"28106"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd18057"
]
}
},
{
"id":"aspsa_c",
"name":"L-Aspartate 4-semialdehyde",
"compartment":"c",
"formula":"C4H7NO3",
"notes":{
"original_bigg_ids":[
"aspsa_c"
]
},
"annotation":{
"bigg.metabolite":[
"aspsa"
],
"biocyc":[
"META:L-ASPARTATE-SEMIALDEHYDE"
],
"chebi":[
"CHEBI:40847",
"CHEBI:18051",
"CHEBI:13087",
"CHEBI:13086",
"CHEBI:21245",
"CHEBI:6194",
"CHEBI:537519"
],
"hmdb":[
"HMDB12249"
],
"inchi_key":[
"HOSWPDPVFBCLSY-VKHMYHEASA-N"
],
"kegg.compound":[
"C00441"
],
"metanetx.chemical":[
"MNXM361"
],
"sabiork":[
"2052"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00346"
]
}
},
{
"id":"2mcacn_c",
"name":"Cis-2-Methylaconitate",
"compartment":"c",
"charge":-3,
"formula":"C7H5O6",
"notes":{
"original_bigg_ids":[
"_2mcacn_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mcacn"
],
"biocyc":[
"META:CPD-1136"
],
"chebi":[
"CHEBI:57872",
"CHEBI:11084",
"CHEBI:18819",
"CHEBI:456",
"CHEBI:16717"
],
"hmdb":[
"HMDB06357"
],
"inchi_key":[
"NUZLRKBHOBPTQV-ARJAWSKDSA-K"
],
"kegg.compound":[
"C04225"
],
"metanetx.chemical":[
"MNXM1792"
],
"sabiork":[
"7166"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02597"
]
}
},
{
"id":"asptrna_c",
"name":"L-Aspartyl-tRNA(Asp)",
"compartment":"c",
"formula":"C4H5NO3R",
"notes":{
"original_bigg_ids":[
"asptrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"asptrna"
],
"kegg.compound":[
"C02984"
],
"metanetx.chemical":[
"MNXM90839"
],
"sabiork":[
"3866"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12226"
]
}
},
{
"id":"2mcit_c",
"name":"2-Methylcitrate",
"compartment":"c",
"charge":-3,
"formula":"C7H7O7",
"notes":{
"original_bigg_ids":[
"_2mcit_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mcit"
],
"biocyc":[
"META:CPD-622"
],
"chebi":[
"CHEBI:30836",
"CHEBI:10860",
"CHEBI:19696",
"CHEBI:30835",
"CHEBI:19695",
"CHEBI:50948",
"CHEBI:58853",
"CHEBI:19630",
"CHEBI:11618",
"CHEBI:11592",
"CHEBI:15598",
"CHEBI:1203"
],
"hmdb":[
"HMDB03610",
"HMDB00379"
],
"inchi_key":[
"YNOXCRMFGMSKIJ-NFNCENRGSA-K"
],
"kegg.compound":[
"C02225"
],
"lipidmaps":[
"LMFA01050442"
],
"metanetx.chemical":[
"MNXM90279"
],
"sabiork":[
"2387"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01501",
"cpd24620"
]
}
},
{
"id":"2me4p_c",
"name":"2-C-methyl-D-erythritol 4-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H11O7P",
"notes":{
"original_bigg_ids":[
"_2me4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2me4p"
],
"biocyc":[
"META:2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE"
],
"chebi":[
"CHEBI:58262",
"CHEBI:17764",
"CHEBI:11483",
"CHEBI:1030"
],
"inchi_key":[
"XMWHRVNVKDKBRG-UHNVWZDZSA-L"
],
"kegg.compound":[
"C11434"
],
"metanetx.chemical":[
"MNXM1626"
],
"sabiork":[
"13501"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08286"
]
}
},
{
"id":"2mecdp_c",
"name":"2-C-methyl-D-erythritol 2,4-cyclodiphosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H10O9P2",
"notes":{
"original_bigg_ids":[
"_2mecdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mecdp"
],
"biocyc":[
"META:2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE"
],
"chebi":[
"CHEBI:1029",
"CHEBI:11481",
"CHEBI:58483",
"CHEBI:11482",
"CHEBI:18425"
],
"inchi_key":[
"SFRQRNJMIIUYDI-UHNVWZDZSA-L"
],
"kegg.compound":[
"C11453"
],
"metanetx.chemical":[
"MNXM1168"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08301"
]
}
},
{
"id":"2obut_c",
"name":"2-Oxobutanoate",
"compartment":"c",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"_2obut_c"
]
},
"annotation":{
"bigg.metabolite":[
"2obut"
],
"biocyc":[
"META:2-OXOBUTANOATE"
],
"chebi":[
"CHEBI:1250",
"CHEBI:16763",
"CHEBI:19741",
"CHEBI:30831",
"CHEBI:11636",
"CHEBI:39748",
"CHEBI:19743"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1d8dba15-23b7-4916-91ba-3b00be5e4e8b",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/86a149cf-c031-463b-aa33-253fcbde268f"
],
"hmdb":[
"HMDB00005",
"HMDB06544"
],
"inchi_key":[
"TYEYBOSBBBHJIV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00109"
],
"lipidmaps":[
"LMFA01060002"
],
"metanetx.chemical":[
"MNXM159"
],
"reactome.compound":[
"936714"
],
"sabiork":[
"1934"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00094"
]
}
},
{
"id":"2p4c2me_c",
"name":"2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol",
"compartment":"c",
"charge":-4,
"formula":"C14H22N3O17P3",
"notes":{
"original_bigg_ids":[
"_2p4c2me_c"
]
},
"annotation":{
"bigg.metabolite":[
"2p4c2me"
],
"biocyc":[
"META:2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET"
],
"chebi":[
"CHEBI:57919",
"CHEBI:11650",
"CHEBI:11649",
"CHEBI:1266",
"CHEBI:16840"
],
"inchi_key":[
"HTJXTKBIUVFUAR-XHIBXCGHSA-J"
],
"kegg.compound":[
"C11436"
],
"metanetx.chemical":[
"MNXM1641"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08288"
]
}
},
{
"id":"2pg_c",
"name":"D-Glycerate 2-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C3H4O7P",
"notes":{
"original_bigg_ids":[
"_2pg_c"
]
},
"annotation":{
"bigg.metabolite":[
"2pg"
],
"biocyc":[
"META:2-PG"
],
"chebi":[
"CHEBI:39868",
"CHEBI:21028",
"CHEBI:58289",
"CHEBI:24344",
"CHEBI:12986",
"CHEBI:17835",
"CHEBI:11651",
"CHEBI:1267",
"CHEBI:88350"
],
"hmdb":[
"HMDB00362",
"HMDB62707",
"HMDB03391"
],
"inchi_key":[
"GXIURPTVHJPJLF-UWTATZPHSA-K"
],
"kegg.compound":[
"C00631"
],
"metanetx.chemical":[
"MNXM275"
],
"reactome.compound":[
"30485"
],
"sabiork":[
"31"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00482"
]
}
},
{
"id":"5prdmbz_c",
"name":"N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole",
"compartment":"c",
"charge":-2,
"formula":"C14H17N2O7P",
"notes":{
"original_bigg_ids":[
"_5prdmbz_c"
]
},
"annotation":{
"bigg.metabolite":[
"5prdmbz"
],
"biocyc":[
"META:ALPHA-RIBAZOLE-5-P"
],
"chebi":[
"CHEBI:45256",
"CHEBI:12622",
"CHEBI:45218",
"CHEBI:16837",
"CHEBI:45255",
"CHEBI:7355",
"CHEBI:30599",
"CHEBI:57918",
"CHEBI:21797"
],
"hmdb":[
"HMDB03882"
],
"inchi_key":[
"ZMRGXEJKZPRBPJ-SYQHCUMBSA-L"
],
"kegg.compound":[
"C04778"
],
"metanetx.chemical":[
"MNXM1224"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02904"
]
}
},
{
"id":"cph4_c",
"name":"6-carboxy-5,6,7,8-tetrahydropterin",
"compartment":"c",
"charge":-1,
"formula":"C7H8N5O3",
"notes":{
"original_bigg_ids":[
"_6ctd_c"
]
},
"annotation":{
"bigg.metabolite":[
"cph4"
],
"biocyc":[
"META:CPD0-1699"
],
"chebi":[
"CHEBI:61032",
"CHEBI:61126"
],
"hmdb":[
"HMDB60410"
],
"inchi_key":[
"QSIYONWVWDSRRO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C20239"
],
"metanetx.chemical":[
"MNXM3194"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21472"
]
}
},
{
"id":"6hch1eccoa_c",
"name":"6-Hydroxycyclohex-1-ene-1-carboxyl-CoA",
"compartment":"c",
"formula":"C28H44N7O18P3S",
"notes":{
"original_bigg_ids":[
"_6hch1eccoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"6hch1eccoa"
],
"biocyc":[
"META:6-HYDROXYCYCLOHEX-1-ENE-1-CARBONYL-COA"
],
"chebi":[
"CHEBI:15505",
"CHEBI:20724",
"CHEBI:57361",
"CHEBI:12215",
"CHEBI:2189"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f86ba665-1560-4017-9b9c-9d7595016723"
],
"hmdb":[
"HMDB12179"
],
"inchi_key":[
"WBCJUEJWJADAGR-CRVKRRNDSA-J"
],
"kegg.compound":[
"C06749"
],
"lipidmaps":[
"LMFA07050271",
"LMFA07050272"
],
"metanetx.chemical":[
"MNXM2792"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04130"
]
}
},
{
"id":"athr__L_c",
"name":"L-Allo-threonine",
"compartment":"c",
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"athr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"athr__L"
],
"biocyc":[
"META:L-ALLO-THREONINE"
],
"chebi":[
"CHEBI:6174",
"CHEBI:58585",
"CHEBI:21221",
"CHEBI:38262",
"CHEBI:40698",
"CHEBI:28718"
],
"hmdb":[
"HMDB04041"
],
"inchi_key":[
"AYFVYJQAPQTCCC-HRFVKAFMSA-N"
],
"kegg.compound":[
"C05519"
],
"metanetx.chemical":[
"MNXM2125"
],
"sabiork":[
"21308",
"2793"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03282"
]
}
},
{
"id":"6hmhpt_c",
"name":"6-hydroxymethyl dihydropterin",
"compartment":"c",
"formula":"C7H9N5O2",
"notes":{
"original_bigg_ids":[
"_6hmhpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"6hmhpt"
],
"biocyc":[
"META:AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE"
],
"chebi":[
"CHEBI:19456",
"CHEBI:1003",
"CHEBI:11511",
"CHEBI:17083",
"CHEBI:44841"
],
"inchi_key":[
"CQQNNQTXUGLUEV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01300"
],
"metanetx.chemical":[
"MNXM937"
],
"sabiork":[
"5516"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29670",
"cpd00954"
]
}
},
{
"id":"34hpp_c",
"name":"3-(4-Hydroxyphenyl)pyruvate",
"compartment":"c",
"charge":-1,
"formula":"C9H7O4",
"notes":{
"original_bigg_ids":[
"_34hpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"34hpp"
],
"biocyc":[
"META:P-HYDROXY-PHENYLPYRUVATE"
],
"chebi":[
"CHEBI:36242",
"CHEBI:20425",
"CHEBI:20426",
"CHEBI:12016",
"CHEBI:15999",
"CHEBI:11725",
"CHEBI:594665",
"CHEBI:11727",
"CHEBI:42422",
"CHEBI:1431"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f2e806ef-76ea-4ddf-bf89-db7737caa79b"
],
"hmdb":[
"HMDB00707"
],
"inchi_key":[
"KKADPXVIOXHVKN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01179"
],
"metanetx.chemical":[
"MNXM153"
],
"reactome.compound":[
"31365"
],
"sabiork":[
"5423"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00868"
]
}
},
{
"id":"atp_c",
"name":"ATP C10H12N5O13P3",
"compartment":"c",
"charge":-4,
"formula":"C10H12N5O13P3",
"notes":{
"original_bigg_ids":[
"atp_c"
]
},
"annotation":{
"bigg.metabolite":[
"atp"
],
"biocyc":[
"META:ATP"
],
"chebi":[
"CHEBI:15422",
"CHEBI:10789",
"CHEBI:10841",
"CHEBI:2359",
"CHEBI:22249",
"CHEBI:13236",
"CHEBI:237958",
"CHEBI:30616",
"CHEBI:57299",
"CHEBI:40938"
],
"hmdb":[
"HMDB00538"
],
"inchi_key":[
"ZKHQWZAMYRWXGA-KQYNXXCUSA-J"
],
"kegg.compound":[
"C00002"
],
"kegg.drug":[
"D08646"
],
"metanetx.chemical":[
"MNXM3"
],
"reactome.compound":[
"8878982",
"389573",
"8938081",
"211579",
"113593",
"113592",
"5632460",
"5696069",
"29358",
"8869363",
"6798184"
],
"sabiork":[
"34"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00002"
]
}
},
{
"id":"3c2hmp_c",
"name":"3-Carboxy-2-hydroxy-4-methylpentanoate",
"compartment":"c",
"charge":-2,
"formula":"C7H10O5",
"notes":{
"original_bigg_ids":[
"_3c2hmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"3c2hmp"
],
"biocyc":[
"META:2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE"
],
"chebi":[
"CHEBI:35120",
"CHEBI:20094",
"CHEBI:35121",
"CHEBI:15592",
"CHEBI:35122",
"CHEBI:35114",
"CHEBI:43468",
"CHEBI:11843",
"CHEBI:11760",
"CHEBI:43465",
"CHEBI:1565"
],
"hmdb":[
"HMDB12156"
],
"inchi_key":[
"RNQHMTFBUSSBJQ-CRCLSJGQSA-L"
],
"kegg.compound":[
"C04411"
],
"metanetx.chemical":[
"MNXM891"
],
"sabiork":[
"7292"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02693"
]
}
},
{
"id":"6hmhptpp_c",
"name":"6-hydroxymethyl-dihydropterin pyrophosphate",
"compartment":"c",
"charge":-3,
"formula":"C7H8N5O8P2",
"notes":{
"original_bigg_ids":[
"_6hmhptpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"6hmhptpp"
],
"biocyc":[
"META:DIHYDROPTERIN-CH2OH-PP"
],
"chebi":[
"CHEBI:15998",
"CHEBI:11512",
"CHEBI:11517",
"CHEBI:72950",
"CHEBI:73083",
"CHEBI:1011",
"CHEBI:57602",
"CHEBI:19465"
],
"inchi_key":[
"FCQGJGLSOWZZON-UHFFFAOYSA-K"
],
"kegg.compound":[
"C04807"
],
"metanetx.chemical":[
"MNXM1160"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16760"
]
}
},
{
"id":"6occhcoa_c",
"name":"6-oxocyclohex-1-ene-1-carboxyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C28H38N7O18P3S",
"notes":{
"original_bigg_ids":[
"_6occhcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"6occhcoa"
],
"biocyc":[
"META:6-OXOCYCLOHEX-1-ENE-1-CARBONYL-COA"
],
"chebi":[
"CHEBI:28168",
"CHEBI:2206",
"CHEBI:20737",
"CHEBI:76526"
],
"hmdb":[
"HMDB12180"
],
"inchi_key":[
"QFOMSXVUILWRSA-TYHXJLICSA-J"
],
"kegg.compound":[
"C09821"
],
"lipidmaps":[
"LMFA07050275",
"LMFA07050274"
],
"metanetx.chemical":[
"MNXM5572"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd06713"
]
}
},
{
"id":"b2coa_c",
"name":"Crotonoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H36N7O17P3S",
"notes":{
"original_bigg_ids":[
"b2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"b2coa"
],
"biocyc":[
"META:CROTONYL-COA"
],
"chebi":[
"CHEBI:3928",
"CHEBI:11531",
"CHEBI:15473",
"CHEBI:36926",
"CHEBI:57332",
"CHEBI:23408",
"CHEBI:14031",
"CHEBI:14032",
"CHEBI:13921",
"CHEBI:41612",
"CHEBI:58669"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c0e5f008-6d8b-4b94-a265-03d19ff197f4"
],
"hmdb":[
"HMDB62466",
"HMDB02009",
"HMDB59627"
],
"inchi_key":[
"KFWWCMJSYSSPSK-PAXLJYGASA-J"
],
"kegg.compound":[
"C00877"
],
"lipidmaps":[
"LMFA07050307"
],
"metanetx.chemical":[
"MNXM214"
],
"reactome.compound":[
"71045",
"77313"
],
"sabiork":[
"2174"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00650"
]
}
},
{
"id":"6pgc_c",
"name":"6-Phospho-D-gluconate",
"compartment":"c",
"charge":-3,
"formula":"C6H10O10P",
"notes":{
"original_bigg_ids":[
"_6pgc_c"
]
},
"annotation":{
"bigg.metabolite":[
"6pgc"
],
"biocyc":[
"META:CPD-2961"
],
"chebi":[
"CHEBI:33851",
"CHEBI:2231",
"CHEBI:16863",
"CHEBI:40282",
"CHEBI:12232",
"CHEBI:48928",
"CHEBI:58759"
],
"hmdb":[
"HMDB01316",
"HMDB62800"
],
"inchi_key":[
"BIRSGZKFKXLSJQ-SQOUGZDYSA-K"
],
"kegg.compound":[
"C00345"
],
"metanetx.chemical":[
"MNXM325"
],
"reactome.compound":[
"29996"
],
"sabiork":[
"22801",
"2024"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00284"
]
}
},
{
"id":"3c3hmp_c",
"name":"3-Carboxy-3-hydroxy-4-methylpentanoate",
"compartment":"c",
"charge":-2,
"formula":"C7H10O5",
"notes":{
"original_bigg_ids":[
"_3c3hmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"3c3hmp"
],
"biocyc":[
"META:3-CARBOXY-3-HYDROXY-ISOCAPROATE"
],
"chebi":[
"CHEBI:35128",
"CHEBI:1178"
],
"hmdb":[
"HMDB00402"
],
"inchi_key":[
"BITYXLXUCSKTJS-ZETCQYMHSA-L"
],
"kegg.compound":[
"C02504"
],
"lipidmaps":[
"LMFA01170083"
],
"metanetx.chemical":[
"MNXM985"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01646"
]
}
},
{
"id":"3c4mop_c",
"name":"3-Carboxy-4-methyl-2-oxopentanoate",
"compartment":"c",
"charge":-2,
"formula":"C7H8O5",
"notes":{
"original_bigg_ids":[
"_3c4mop_c"
]
},
"annotation":{
"bigg.metabolite":[
"3c4mop"
],
"biocyc":[
"META:CPD-7100"
],
"chebi":[
"CHEBI:17214",
"CHEBI:19975",
"CHEBI:11765",
"CHEBI:1467"
],
"hmdb":[
"HMDB12149"
],
"inchi_key":[
"HIIZAGQWABAMRR-BYPYZUCNSA-L"
],
"kegg.compound":[
"C04236"
],
"metanetx.chemical":[
"MNXM1602"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02605"
]
}
},
{
"id":"benzcoa_c",
"name":"Benzoyl-CoA",
"compartment":"c",
"formula":"C28H40N7O17P3S",
"notes":{
"original_bigg_ids":[
"benzcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"benzcoa"
],
"biocyc":[
"META:BENZOYLCOA"
],
"chebi":[
"CHEBI:8952",
"CHEBI:15515",
"CHEBI:22735",
"CHEBI:57369",
"CHEBI:13883",
"CHEBI:13882"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/bed571b9-aaeb-4029-baf1-b0faf7856ca0"
],
"hmdb":[
"HMDB02252"
],
"inchi_key":[
"VEVJTUNLALKRNO-TYHXJLICSA-J"
],
"kegg.compound":[
"C00512"
],
"metanetx.chemical":[
"MNXM240"
],
"reactome.compound":[
"159447"
],
"sabiork":[
"2067"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00401"
]
}
},
{
"id":"3dhq_c",
"name":"3-Dehydroquinate",
"compartment":"c",
"charge":-1,
"formula":"C7H9O6",
"notes":{
"original_bigg_ids":[
"_3dhq_c"
]
},
"annotation":{
"bigg.metabolite":[
"3dhq"
],
"biocyc":[
"META:DEHYDROQUINATE"
],
"chebi":[
"CHEBI:19997",
"CHEBI:32364",
"CHEBI:1487",
"CHEBI:12122",
"CHEBI:17947",
"CHEBI:11781",
"CHEBI:42078"
],
"hmdb":[
"HMDB12710"
],
"inchi_key":[
"WVMWZWGZRAXUBK-SYTVJDICSA-M"
],
"kegg.compound":[
"C00944"
],
"metanetx.chemical":[
"MNXM478"
],
"reactome.compound":[
"964921"
],
"sabiork":[
"27311",
"5328"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00699"
]
}
},
{
"id":"bmoco_c",
"name":"Bis-molybdenum cofactor",
"compartment":"c",
"charge":-4,
"formula":"C20H20N10O13P2S4Mo",
"notes":{
"original_bigg_ids":[
"bmoco_c"
]
},
"annotation":{
"bigg.metabolite":[
"bmoco"
],
"biocyc":[
"META:CPD-15874"
],
"metanetx.chemical":[
"MNXM147053"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3dhsk_c",
"name":"3-Dehydroshikimate",
"compartment":"c",
"charge":-1,
"formula":"C7H7O5",
"notes":{
"original_bigg_ids":[
"_3dhsk_c"
]
},
"annotation":{
"bigg.metabolite":[
"3dhsk"
],
"biocyc":[
"META:3-DEHYDRO-SHIKIMATE"
],
"chebi":[
"CHEBI:1488",
"CHEBI:2052",
"CHEBI:12123",
"CHEBI:30918",
"CHEBI:17841",
"CHEBI:20566",
"CHEBI:19998",
"CHEBI:19999",
"CHEBI:11782",
"CHEBI:16630",
"CHEBI:42005"
],
"inchi_key":[
"SLWWJZMPHJJOPH-PHDIDXHHSA-M"
],
"kegg.compound":[
"C02637"
],
"metanetx.chemical":[
"MNXM611"
],
"reactome.compound":[
"964941"
],
"sabiork":[
"6290",
"27313"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01716"
]
}
},
{
"id":"6pgl_c",
"name":"6-phospho-D-glucono-1,5-lactone",
"compartment":"c",
"charge":-2,
"formula":"C6H9O9P",
"notes":{
"original_bigg_ids":[
"_6pgl_c"
]
},
"annotation":{
"bigg.metabolite":[
"6pgl"
],
"biocyc":[
"META:D-6-P-GLUCONO-DELTA-LACTONE"
],
"chebi":[
"CHEBI:12233",
"CHEBI:4160",
"CHEBI:57955",
"CHEBI:16938",
"CHEBI:20989",
"CHEBI:12958"
],
"hmdb":[
"HMDB62628",
"HMDB01127"
],
"inchi_key":[
"IJOJIVNDFQSGAB-SQOUGZDYSA-L"
],
"kegg.compound":[
"C01236"
],
"metanetx.chemical":[
"MNXM429"
],
"reactome.compound":[
"31467"
],
"sabiork":[
"1366"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00911"
]
}
},
{
"id":"bmoco1gdp_c",
"name":"Bis-molybdopterin mono-guanine dinucleotide",
"compartment":"c",
"charge":-4,
"formula":"C30H32N15O20P3S4Mo",
"notes":{
"original_bigg_ids":[
"bmoco1gdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"bmoco1gdp"
],
"metanetx.chemical":[
"MNXM148110"
],
"sbo":"SBO:0000247"
}
},
{
"id":"8aonn_c",
"name":"8-Amino-7-oxononanoate",
"compartment":"c",
"formula":"C9H17NO3",
"notes":{
"original_bigg_ids":[
"_8aonn_c"
]
},
"annotation":{
"bigg.metabolite":[
"8aonn"
],
"biocyc":[
"META:8-AMINO-7-OXONONANOATE"
],
"chebi":[
"CHEBI:57532",
"CHEBI:15830",
"CHEBI:12266",
"CHEBI:20808",
"CHEBI:2308"
],
"hmdb":[
"HMDB37790"
],
"inchi_key":[
"GUAHPAJOXVYFON-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01092"
],
"lipidmaps":[
"LMFA01100058",
"LMFA01060168"
],
"metanetx.chemical":[
"MNXM1141"
],
"sabiork":[
"5387"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00800"
]
}
},
{
"id":"3fe4s_c",
"name":"[3Fe-4S] damaged iron-sulfur cluster",
"compartment":"c",
"formula":"S4Fe3",
"notes":{
"original_bigg_ids":[
"_3fe4s_c"
]
},
"annotation":{
"bigg.metabolite":[
"3fe4s"
],
"metanetx.chemical":[
"MNXM147396"
],
"sbo":"SBO:0000247"
}
},
{
"id":"bmocogdp_c",
"name":"Bis-molybdopterin guanine dinucleotide",
"compartment":"c",
"charge":-4,
"formula":"C40H44N20O27P4S4Mo",
"notes":{
"original_bigg_ids":[
"bmocogdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"bmocogdp"
],
"metanetx.chemical":[
"MNXM147054"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3haACP_c",
"name":"(3R)-3-Hydroxyacyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C15H27N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3haACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3haACP"
],
"biocyc":[
"META:OH-ACYL-ACP"
],
"chebi":[
"CHEBI:84648"
],
"kegg.compound":[
"C01271"
],
"metanetx.chemical":[
"MNXM5861"
],
"reactome.compound":[
"8862371"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11836"
]
}
},
{
"id":"ACP_c",
"name":"Acyl carrier protein",
"compartment":"c",
"charge":-1,
"formula":"C11H21N2O7PRS",
"notes":{
"original_bigg_ids":[
"ACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ACP"
],
"biocyc":[
"META:ACP"
],
"chebi":[
"CHEBI:14405",
"CHEBI:18359",
"CHEBI:2458"
],
"kegg.compound":[
"C00229"
],
"metanetx.chemical":[
"MNXM925"
],
"sabiork":[
"2186"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11493"
]
}
},
{
"id":"LalaDglu_c",
"name":"L-alanine-D-glutamate",
"compartment":"c",
"charge":-1,
"formula":"C8H13N2O5",
"notes":{
"original_bigg_ids":[
"LalaDglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDglu"
],
"biocyc":[
"META:CPD0-2190"
],
"chebi":[
"CHEBI:61566",
"CHEBI:61395"
],
"inchi_key":[
"VYZAGTDAHUIRQA-CRCLSJGQSA-M"
],
"kegg.compound":[
"C20957"
],
"metanetx.chemical":[
"MNXM3630"
],
"sabiork":[
"22905"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15385"
]
}
},
{
"id":"btal_c",
"name":"Butanal C4H8O",
"compartment":"c",
"formula":"C4H8O",
"notes":{
"original_bigg_ids":[
"btal_c"
]
},
"annotation":{
"bigg.metabolite":[
"btal"
],
"biocyc":[
"META:BUTANAL"
],
"chebi":[
"CHEBI:22938",
"CHEBI:3233",
"CHEBI:15743",
"CHEBI:13923"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/242f8a4e-2a91-4c5f-a129-d044d115b969"
],
"hmdb":[
"HMDB03543"
],
"inchi_key":[
"ZTQSAGDEMFDKMZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01412"
],
"metanetx.chemical":[
"MNXM1017"
],
"sabiork":[
"2281"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01011"
]
}
},
{
"id":"LalaDgluMdap_c",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate",
"compartment":"c",
"charge":-1,
"formula":"C15H25N4O8",
"notes":{
"original_bigg_ids":[
"LalaDgluMdap_c"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdap"
],
"metanetx.chemical":[
"MNXM90242"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15386"
]
}
},
{
"id":"3hbcoa_c",
"name":"(S)-3-Hydroxybutanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H38N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3hbcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hbcoa"
],
"biocyc":[
"META:S-3-HYDROXYBUTANOYL-COA"
],
"chebi":[
"CHEBI:18749",
"CHEBI:394",
"CHEBI:15453",
"CHEBI:11048",
"CHEBI:39978",
"CHEBI:57316"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/52913599-1749-4913-8cc4-b6c15d72ad5e"
],
"hmdb":[
"HMDB62259"
],
"inchi_key":[
"QHHKKMYHDBRONY-VKBDFPRVSA-J"
],
"kegg.compound":[
"C01144"
],
"lipidmaps":[
"LMFA07050153"
],
"metanetx.chemical":[
"MNXM446"
],
"reactome.compound":[
"77251"
],
"sabiork":[
"2254"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00842"
],
"slm":[
"000001032"
]
}
},
{
"id":"3hcddec5eACP_c",
"name":"(R)-3-hydroxy-cis-dodec-5-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C23H41N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hcddec5eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hcddec5eACP"
],
"metanetx.chemical":[
"MNXM5389"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15366"
]
}
},
{
"id":"btamp_c",
"name":"Biotinyl 5  AMP C20H27N7O9PS",
"compartment":"c",
"charge":-1,
"formula":"C20H27N7O9PS",
"notes":{
"original_bigg_ids":[
"btamp_c"
]
},
"annotation":{
"bigg.metabolite":[
"btamp"
],
"inchi_key":[
"UTQCSTJVMLODHM-RHCAYAJFSA-N"
],
"metanetx.chemical":[
"MNXM722791"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22432",
"cpd03517"
]
}
},
{
"id":"3hcmrs7eACP_c",
"name":"(R)-3-hydroxy-cis-myristol-7-eoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C25H45N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hcmrs7eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hcmrs7eACP"
],
"metanetx.chemical":[
"MNXM5390"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15368"
]
}
},
{
"id":"LalaDgluMdapDala_c",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine",
"compartment":"c",
"charge":-1,
"formula":"C18H30N5O9",
"notes":{
"original_bigg_ids":[
"LalaDgluMdapDala_c"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdapDala"
],
"inchi_key":[
"BAPAFFOXTCMVCC-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM59271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15387"
]
}
},
{
"id":"LalaLglu_c",
"name":"L-alanine-L-glutamate",
"compartment":"c",
"charge":-1,
"formula":"C8H13N2O5",
"notes":{
"original_bigg_ids":[
"LalaLglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"LalaLglu"
],
"biocyc":[
"META:CPD0-1445"
],
"chebi":[
"CHEBI:61396",
"CHEBI:61565"
],
"inchi_key":[
"VYZAGTDAHUIRQA-WHFBIAKZSA-M"
],
"kegg.compound":[
"C20958"
],
"metanetx.chemical":[
"MNXM4026"
],
"sabiork":[
"22899"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15388"
]
}
},
{
"id":"btcoa_c",
"name":"Butanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H38N7O17P3S",
"notes":{
"original_bigg_ids":[
"btcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"btcoa"
],
"biocyc":[
"META:BUTYRYL-COA"
],
"chebi":[
"CHEBI:57371",
"CHEBI:22953",
"CHEBI:22973",
"CHEBI:3235",
"CHEBI:15517",
"CHEBI:13926"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dcfe6e71-5e24-4086-91a3-076df362da44"
],
"hmdb":[
"HMDB01088"
],
"inchi_key":[
"CRFNGMNYKDXRTN-CITAKDKDSA-J"
],
"kegg.compound":[
"C00136"
],
"lipidmaps":[
"LMFA07050292"
],
"metanetx.chemical":[
"MNXM233"
],
"reactome.compound":[
"77318"
],
"sabiork":[
"1942"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00120"
],
"slm":[
"000001035"
]
}
},
{
"id":"Lcyst_c",
"name":"L-Cysteate",
"compartment":"c",
"charge":-1,
"formula":"C3H6NO5S",
"notes":{
"original_bigg_ids":[
"Lcyst_c"
]
},
"annotation":{
"bigg.metabolite":[
"Lcyst"
],
"biocyc":[
"META:L-CYSTEATE"
],
"chebi":[
"CHEBI:58090",
"CHEBI:44590",
"CHEBI:13094",
"CHEBI:6206",
"CHEBI:17285",
"CHEBI:44466",
"CHEBI:44708",
"CHEBI:44513"
],
"inchi_key":[
"XVOYSCVBGLVSOL-REOHCLBHSA-M"
],
"kegg.compound":[
"C00506"
],
"metanetx.chemical":[
"MNXM713"
],
"reactome.compound":[
"5673778",
"379444"
],
"sabiork":[
"2064"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00395"
]
}
},
{
"id":"3hcpalm9eACP_c",
"name":"(R)-3-hydroxy-cis-palm-9-eoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C27H49N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hcpalm9eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hcpalm9eACP"
],
"metanetx.chemical":[
"MNXM6556"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15369"
]
}
},
{
"id":"btn_c",
"name":"Biotin",
"compartment":"c",
"charge":-1,
"formula":"C10H15N2O3S",
"notes":{
"original_bigg_ids":[
"btn_c"
]
},
"annotation":{
"bigg.metabolite":[
"btn"
],
"biocyc":[
"META:BIOTIN"
],
"chebi":[
"CHEBI:13905",
"CHEBI:57586",
"CHEBI:22884",
"CHEBI:3108",
"CHEBI:41236",
"CHEBI:15956",
"CHEBI:22882"
],
"hmdb":[
"HMDB00030"
],
"inchi_key":[
"YBJHBAHKTGYVGT-ZKWXMUAHSA-M"
],
"kegg.compound":[
"C00120"
],
"kegg.drug":[
"D00029"
],
"metanetx.chemical":[
"MNXM304"
],
"reactome.compound":[
"199238",
"29582",
"199207"
],
"sabiork":[
"1936"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00104"
]
}
},
{
"id":"3hcvac11eACP_c",
"name":"(R)-3-hydroxy-cis-vacc-11-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C29H53N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hcvac11eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hcvac11eACP"
],
"metanetx.chemical":[
"MNXM6557"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15370"
]
}
},
{
"id":"Ncbmpts_c",
"name":"N-Carbamoylputrescine",
"compartment":"c",
"formula":"C5H13N3O",
"notes":{
"original_bigg_ids":[
"Ncbmpts_c"
]
},
"annotation":{
"bigg.metabolite":[
"Ncbmpts"
],
"biocyc":[
"META:CPD-597"
],
"chebi":[
"CHEBI:58318",
"CHEBI:12497",
"CHEBI:21691",
"CHEBI:7258",
"CHEBI:17902",
"CHEBI:12594"
],
"hmdb":[
"HMDB33458"
],
"inchi_key":[
"YANFYYGANIYHGI-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00436"
],
"metanetx.chemical":[
"MNXM1243"
],
"sabiork":[
"5093"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00341"
]
}
},
{
"id":"3hdcoa_c",
"name":"(S)-3-Hydroxydecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C31H50N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3hdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hdcoa"
],
"biocyc":[
"META:CPD0-2244"
],
"chebi":[
"CHEBI:62616",
"CHEBI:28325",
"CHEBI:418",
"CHEBI:18779"
],
"hmdb":[
"HMDB03938"
],
"inchi_key":[
"HIVSMYZAMUNFKZ-PNPVFPMQSA-J"
],
"kegg.compound":[
"C05264"
],
"lipidmaps":[
"LMFA07050014",
"LMFA07050154"
],
"metanetx.chemical":[
"MNXM674"
],
"reactome.compound":[
"77341"
],
"sabiork":[
"2741"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03118"
],
"slm":[
"000001027"
]
}
},
{
"id":"btoh_c",
"name":"Butanol",
"compartment":"c",
"formula":"C4H10O",
"notes":{
"original_bigg_ids":[
"btoh_c"
]
},
"annotation":{
"bigg.metabolite":[
"btoh"
],
"biocyc":[
"META:BUTANOL"
],
"chebi":[
"CHEBI:22936",
"CHEBI:612",
"CHEBI:28885",
"CHEBI:39632"
],
"hmdb":[
"HMDB04327"
],
"inchi_key":[
"LRHPLDYGYMQRHN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06142"
],
"kegg.drug":[
"D03200"
],
"lipidmaps":[
"LMFA05000109"
],
"metanetx.chemical":[
"MNXM3230"
],
"sabiork":[
"25507",
"2869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03662"
]
}
},
{
"id":"3hddcoa_c",
"name":"(S)-3-Hydroxydodecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C33H54N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3hddcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hddcoa"
],
"biocyc":[
"META:CPD0-2107"
],
"chebi":[
"CHEBI:396",
"CHEBI:62558",
"CHEBI:18751",
"CHEBI:27668"
],
"hmdb":[
"HMDB62260",
"HMDB03936"
],
"inchi_key":[
"IJFLXRCJWPKGKJ-LXIXEQKWSA-J"
],
"kegg.compound":[
"C05262"
],
"lipidmaps":[
"LMFA07050158",
"LMFA07050012"
],
"metanetx.chemical":[
"MNXM733"
],
"reactome.compound":[
"77252"
],
"sabiork":[
"2739"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03116"
],
"slm":[
"000001023"
]
}
},
{
"id":"aacoa_c",
"name":"Acetoacetyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H36N7O18P3S",
"notes":{
"original_bigg_ids":[
"aacoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"aacoa"
],
"biocyc":[
"META:ACETOACETYL-COA"
],
"chebi":[
"CHEBI:22173",
"CHEBI:15345",
"CHEBI:2392",
"CHEBI:13706",
"CHEBI:11756",
"CHEBI:41333",
"CHEBI:57286"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e8a0c5c5-e9b1-4f85-94c1-d3d04866d6c9"
],
"hmdb":[
"HMDB01484",
"HMDB11665"
],
"inchi_key":[
"OJFDKHTZOUZBOS-CITAKDKDSA-J"
],
"kegg.compound":[
"C00332"
],
"lipidmaps":[
"LMFA07050030"
],
"metanetx.chemical":[
"MNXM133"
],
"reactome.compound":[
"191293",
"73871"
],
"sabiork":[
"2019"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00279"
],
"slm":[
"000000298"
]
}
},
{
"id":"but_c",
"name":"Butyrate (n-C4:0)",
"compartment":"c",
"charge":-1,
"formula":"C4H7O2",
"notes":{
"original_bigg_ids":[
"but_c"
]
},
"annotation":{
"bigg.metabolite":[
"but"
],
"metanetx.chemical":[
"MNXM162281"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ac_c",
"name":"Acetate",
"compartment":"c",
"charge":-1,
"formula":"C2H3O2",
"notes":{
"original_bigg_ids":[
"ac_c"
]
},
"annotation":{
"bigg.metabolite":[
"ac"
],
"biocyc":[
"META:ACET"
],
"chebi":[
"CHEBI:13704",
"CHEBI:22165",
"CHEBI:22169",
"CHEBI:40480",
"CHEBI:15366",
"CHEBI:2387",
"CHEBI:30089",
"CHEBI:40486"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/9e26dcbe-4db9-46a0-8614-9f03545032d2",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/5e4989fc-13d3-45d4-ad57-3be380a9d3c0",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a8f0be58-24e8-441b-8d81-a516a0ead4b3",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/d45256fe-61fa-4f5b-bb16-91a3d615e3d8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/3e2d750f-df31-4445-9255-163c627e9b4a"
],
"hmdb":[
"HMDB00042"
],
"inchi_key":[
"QTBSBXVTEAMEQO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00033"
],
"kegg.drug":[
"D00010"
],
"lipidmaps":[
"LMFA01010002"
],
"metanetx.chemical":[
"MNXM26"
],
"reactome.compound":[
"1524044",
"390305",
"113539",
"2022890",
"29416"
],
"sabiork":[
"1278"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00029"
],
"slm":[
"000000449"
]
}
},
{
"id":"3hddecACP_c",
"name":"(R)-3-Hydroxydodecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C23H43N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hddecACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hddecACP"
],
"chebi":[
"CHEBI:325"
],
"kegg.compound":[
"C05757"
],
"lipidmaps":[
"LMFA07060015"
],
"metanetx.chemical":[
"MNXM27066"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11480"
]
}
},
{
"id":"but2eACP_c",
"name":"But-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C15H25N2O8PRS",
"notes":{
"original_bigg_ids":[
"but2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"but2eACP"
],
"kegg.compound":[
"C04246"
],
"metanetx.chemical":[
"MNXM3229"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11465"
]
}
},
{
"id":"3hdecACP_c",
"name":"(R)-3-Hydroxydecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C21H39N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hdecACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hdecACP"
],
"biocyc":[
"META:Beta-hydroxydecanoyl-ACPs"
],
"kegg.compound":[
"C04619"
],
"metanetx.chemical":[
"MNXM7127"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11482"
]
}
},
{
"id":"acACP_c",
"name":"Acetyl-ACP",
"compartment":"c",
"charge":-1,
"formula":"C13H23N2O8PRS",
"notes":{
"original_bigg_ids":[
"acACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"acACP"
],
"biocyc":[
"META:ACETYL-ACP"
],
"chebi":[
"CHEBI:13713",
"CHEBI:2409",
"CHEBI:17093"
],
"kegg.compound":[
"C03939"
],
"metanetx.chemical":[
"MNXM1269"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11494"
]
}
},
{
"id":"butACP_c",
"name":"Butyryl-ACP (n-C4:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C15H27N2O8PRS",
"notes":{
"original_bigg_ids":[
"butACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"butACP"
],
"metanetx.chemical":[
"MNXM90458"
],
"sbo":"SBO:0000247"
}
},
{
"id":"acac_c",
"name":"Acetoacetate",
"compartment":"c",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"acac_c"
]
},
"annotation":{
"bigg.metabolite":[
"acac"
],
"biocyc":[
"META:3-KETOBUTYRATE"
],
"chebi":[
"CHEBI:40507",
"CHEBI:131367",
"CHEBI:15344",
"CHEBI:13705",
"CHEBI:2391",
"CHEBI:22172"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/924da7cc-7d56-4de8-8fc5-6750e564b19d",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/fb4f33dd-4427-4324-bdc3-c9e1f3655a36",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/c0d6192a-b52c-4bd4-a5ef-f1b459bc5a3f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/1d5be1e0-4890-4396-a3bf-af5789c697c6",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6fdb8e86-869c-43e6-a53f-5be3d9719096"
],
"hmdb":[
"HMDB00060"
],
"inchi_key":[
"WDJHALXBUFZDSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00164"
],
"lipidmaps":[
"LMFA01060003"
],
"metanetx.chemical":[
"MNXM154"
],
"reactome.compound":[
"73909",
"29666"
],
"sabiork":[
"1956"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00142"
]
}
},
{
"id":"3hhcoa_c",
"name":"(S)-3-Hydroxyhexanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C27H42N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3hhcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hhcoa"
],
"biocyc":[
"META:OH-HEXANOYL-COA"
],
"chebi":[
"CHEBI:62075",
"CHEBI:419",
"CHEBI:18780",
"CHEBI:28276"
],
"hmdb":[
"HMDB03942",
"HMDB62262"
],
"inchi_key":[
"VAAHKRMGOFIORX-IKTBLOROSA-J"
],
"kegg.compound":[
"C05268"
],
"lipidmaps":[
"LMFA07050156",
"LMFA07050017"
],
"metanetx.chemical":[
"MNXM757"
],
"reactome.compound":[
"77322"
],
"sabiork":[
"2745"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03122"
],
"slm":[
"000001030"
]
}
},
{
"id":"butpi_c",
"name":"Butanoyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C4H7O5P",
"notes":{
"original_bigg_ids":[
"butpi_c"
]
},
"annotation":{
"bigg.metabolite":[
"butpi"
],
"biocyc":[
"META:BUTYRYL-P"
],
"chebi":[
"CHEBI:17260",
"CHEBI:13927",
"CHEBI:13925",
"CHEBI:58079",
"CHEBI:3236",
"CHEBI:22952"
],
"inchi_key":[
"JSHMCUNOMIZJDJ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02527"
],
"metanetx.chemical":[
"MNXM2105"
],
"sabiork":[
"1720"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01662"
]
}
},
{
"id":"3hhdcoa_c",
"name":"(S)-3-Hydroxyhexadecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C37H62N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3hhdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hhdcoa"
],
"biocyc":[
"META:CPD0-2232"
],
"chebi":[
"CHEBI:397",
"CHEBI:27402",
"CHEBI:18752",
"CHEBI:62613"
],
"hmdb":[
"HMDB03932"
],
"inchi_key":[
"DEHLMTDDPWDRDR-BCIKBWLNSA-J"
],
"kegg.compound":[
"C05258"
],
"lipidmaps":[
"LMFA07050161"
],
"metanetx.chemical":[
"MNXM825"
],
"reactome.compound":[
"77300"
],
"sabiork":[
"2735"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03113"
],
"slm":[
"000000868"
]
}
},
{
"id":"acald_c",
"name":"Acetaldehyde",
"compartment":"c",
"formula":"C2H4O",
"notes":{
"original_bigg_ids":[
"acald_c"
]
},
"annotation":{
"bigg.metabolite":[
"acald"
],
"biocyc":[
"META:ACETALD"
],
"chebi":[
"CHEBI:40533",
"CHEBI:13703",
"CHEBI:2383",
"CHEBI:22158",
"CHEBI:15343"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/9c8865b2-a99d-42e4-a042-c88504f04b51",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/47aa8e53-36ae-4be3-987c-c1cfab66af78",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ee2c714d-ff9d-4df8-b343-48c1ec76ef0e",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/78f3645f-408e-4001-9dda-a52ea62a15d4"
],
"hmdb":[
"HMDB00990"
],
"inchi_key":[
"IKHGUXGNUITLKF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00084"
],
"metanetx.chemical":[
"MNXM75"
],
"reactome.compound":[
"113532",
"29510",
"113681",
"113745"
],
"sabiork":[
"1292"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00071"
]
}
},
{
"id":"butso3_c",
"name":"Butanesulfonate",
"compartment":"c",
"charge":-1,
"formula":"C4H9O3S",
"notes":{
"original_bigg_ids":[
"butso3_c"
]
},
"annotation":{
"bigg.metabolite":[
"butso3"
],
"metanetx.chemical":[
"MNXM7138"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11596"
]
}
},
{
"id":"accoa_c",
"name":"Acetyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C23H34N7O17P3S",
"notes":{
"original_bigg_ids":[
"accoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"accoa"
],
"biocyc":[
"META:ACETYL-COA"
],
"chebi":[
"CHEBI:57288",
"CHEBI:22192",
"CHEBI:15351",
"CHEBI:13712",
"CHEBI:2408",
"CHEBI:40470"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/57bd5e24-9d14-4b91-bc60-64c8ea6c2d11"
],
"hmdb":[
"HMDB01206"
],
"inchi_key":[
"ZSLZBFCDCINBPY-ZSJPKINUSA-J"
],
"kegg.compound":[
"C00024"
],
"lipidmaps":[
"LMFA07050029",
"LMFA07050281"
],
"metanetx.chemical":[
"MNXM21"
],
"reactome.compound":[
"727753",
"76183",
"113560",
"353123",
"113559"
],
"sabiork":[
"1276"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00022"
],
"slm":[
"000000297"
]
}
},
{
"id":"3hhexACP_c",
"name":"(R)-3-Hydroxyhexanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C17H31N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hhexACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hhexACP"
],
"chebi":[
"CHEBI:326"
],
"kegg.compound":[
"C05747"
],
"lipidmaps":[
"LMFA07060006"
],
"metanetx.chemical":[
"MNXM25370"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11479"
]
}
},
{
"id":"bwco_c",
"name":"Tungsten bispterin cofactor",
"compartment":"c",
"charge":-4,
"formula":"C20H20N10O13P2S4W",
"notes":{
"original_bigg_ids":[
"bwco_c"
]
},
"annotation":{
"bigg.metabolite":[
"bwco"
],
"metanetx.chemical":[
"MNXM148529"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3hmrsACP_c",
"name":"(R)-3-Hydroxytetradecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C25H47N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hmrsACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hmrsACP"
],
"biocyc":[
"META:R-3-hydroxymyristoyl-ACPs"
],
"kegg.compound":[
"C04688"
],
"metanetx.chemical":[
"MNXM7733"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11484"
]
}
},
{
"id":"acetone_c",
"name":"Acetone",
"compartment":"c",
"formula":"C3H6O",
"notes":{
"original_bigg_ids":[
"acetone_c"
]
},
"annotation":{
"bigg.metabolite":[
"acetone"
],
"biocyc":[
"META:ACETONE"
],
"chebi":[
"CHEBI:2398",
"CHEBI:13708",
"CHEBI:15347",
"CHEBI:78217",
"CHEBI:40571",
"CHEBI:22182"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/eec1e89a-2d3f-4a95-8d05-f3f2d87cd63e",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/6244887a-42c5-4217-b188-a765369897f1",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/71162963-44f3-44dc-ad05-276192a69154"
],
"hmdb":[
"HMDB01659"
],
"inchi_key":[
"CSCPPACGZOOCGX-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00207"
],
"kegg.drug":[
"D02311"
],
"lipidmaps":[
"LMFA12000057"
],
"metanetx.chemical":[
"MNXM398"
],
"sabiork":[
"1974"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00178"
]
}
},
{
"id":"acg5p_c",
"name":"N-Acetyl-L-glutamyl 5-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C7H9NO8P",
"notes":{
"original_bigg_ids":[
"acg5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"acg5p"
],
"biocyc":[
"META:N-ACETYL-GLUTAMYL-P"
],
"chebi":[
"CHEBI:21550",
"CHEBI:12576",
"CHEBI:16878",
"CHEBI:12441",
"CHEBI:7151",
"CHEBI:57936"
],
"hmdb":[
"HMDB06456"
],
"inchi_key":[
"FCVIHFVSXHOPSW-YFKPBYRVSA-K"
],
"kegg.compound":[
"C04133"
],
"metanetx.chemical":[
"MNXM1384"
],
"sabiork":[
"1790"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02552"
]
}
},
{
"id":"bwco1gdp_c",
"name":"Tungsten bispterin cofactor mono-guanine dinucleotide",
"compartment":"c",
"charge":-4,
"formula":"C30H32N15O20P3S4W",
"notes":{
"original_bigg_ids":[
"bwco1gdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"bwco1gdp"
],
"metanetx.chemical":[
"MNXM148530"
],
"sbo":"SBO:0000247"
}
},
{
"id":"acg5sa_c",
"name":"N-Acetyl-L-glutamate 5-semialdehyde",
"compartment":"c",
"charge":-1,
"formula":"C7H10NO4",
"notes":{
"original_bigg_ids":[
"acg5sa_c"
]
},
"annotation":{
"bigg.metabolite":[
"acg5sa"
],
"biocyc":[
"META:CPD-469"
],
"chebi":[
"CHEBI:16319",
"CHEBI:11493",
"CHEBI:12577",
"CHEBI:7152",
"CHEBI:29123",
"CHEBI:12461",
"CHEBI:21551"
],
"hmdb":[
"HMDB06488"
],
"inchi_key":[
"BCPSFKBPHHBDAI-LURJTMIESA-M"
],
"kegg.compound":[
"C01250"
],
"metanetx.chemical":[
"MNXM1062"
],
"sabiork":[
"2267"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00918"
]
}
},
{
"id":"3hocoa_c",
"name":"(S)-3-Hydroxyoctanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C29H46N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3hocoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hocoa"
],
"chebi":[
"CHEBI:395",
"CHEBI:18750",
"CHEBI:420",
"CHEBI:62617",
"CHEBI:27800",
"CHEBI:28632",
"CHEBI:18781"
],
"hmdb":[
"HMDB03940"
],
"inchi_key":[
"ATVGTMKWKDUCMS-OTOYJEMWSA-J"
],
"kegg.compound":[
"C05266"
],
"lipidmaps":[
"LMFA07050015",
"LMFA07050160"
],
"metanetx.chemical":[
"MNXM766"
],
"reactome.compound":[
"77330"
],
"sabiork":[
"2743"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03120"
],
"slm":[
"000001025"
]
}
},
{
"id":"bwcogdp_c",
"name":"Tungsten bispterin cofactor guanine dinucleotide",
"compartment":"c",
"charge":-4,
"formula":"C40H44N20O27P4S4W",
"notes":{
"original_bigg_ids":[
"bwcogdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"bwcogdp"
],
"metanetx.chemical":[
"MNXM149209"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3hoctACP_c",
"name":"(R)-3-Hydroxyoctanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C19H35N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hoctACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hoctACP"
],
"biocyc":[
"META:3-Hydroxy-octanoyl-ACPs"
],
"kegg.compound":[
"C04620"
],
"metanetx.chemical":[
"MNXM10019"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11483"
]
}
},
{
"id":"acgam_c",
"name":"N-Acetyl-D-glucosamine",
"compartment":"c",
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acgam_c"
]
},
"annotation":{
"bigg.metabolite":[
"acgam"
],
"biocyc":[
"META:N-acetyl-D-glucosamine"
],
"chebi":[
"CHEBI:21517",
"CHEBI:12455",
"CHEBI:506227",
"CHEBI:12563",
"CHEBI:7123",
"CHEBI:17411",
"CHEBI:58134"
],
"hmdb":[
"HMDB62641",
"HMDB00215",
"HMDB14288",
"HMDB00533"
],
"inchi_key":[
"OVRNDRQMDRJTHS-RTRLPJTCSA-N"
],
"kegg.compound":[
"C00140"
],
"metanetx.chemical":[
"MNXM143"
],
"reactome.compound":[
"2162231",
"1678743"
],
"sabiork":[
"95"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27608",
"cpd00122"
]
}
},
{
"id":"bz_c",
"name":"Benzoate",
"compartment":"c",
"charge":-1,
"formula":"C7H5O2",
"notes":{
"original_bigg_ids":[
"bz_c"
]
},
"annotation":{
"bigg.metabolite":[
"bz"
],
"biocyc":[
"META:BENZOATE"
],
"chebi":[
"CHEBI:3029",
"CHEBI:22717",
"CHEBI:22722",
"CHEBI:13879",
"CHEBI:16150",
"CHEBI:30746",
"CHEBI:41051"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/cdd00042-5c3e-4e42-bd2e-d98fd864baf2",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5f4c2b73-5f5e-40fe-8eb6-63ac4d9d4d4f",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/d37351f6-0937-4a6a-be39-fcfde47d1d15"
],
"hmdb":[
"HMDB01870"
],
"inchi_key":[
"WPYMKLBDIGXBTP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00180",
"C00539"
],
"kegg.drug":[
"D00038"
],
"metanetx.chemical":[
"MNXM217"
],
"reactome.compound":[
"159446"
],
"sabiork":[
"1912"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00153"
]
}
},
{
"id":"acgam1p_c",
"name":"N-Acetyl-D-glucosamine 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acgam1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"acgam1p"
],
"chebi":[
"CHEBI:7125"
],
"hmdb":[
"HMDB01367"
],
"inchi_key":[
"FZLJPEPAYPUMMR-RTRLPJTCSA-L"
],
"kegg.compound":[
"C04256"
],
"metanetx.chemical":[
"MNXM91871"
],
"reactome.compound":[
"532204"
],
"sabiork":[
"1801",
"26400"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02611"
]
}
},
{
"id":"3hoctaACP_c",
"name":"(R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C29H55N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hoctaACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hoctaACP"
],
"kegg.compound":[
"C16220"
],
"metanetx.chemical":[
"MNXM6417"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15371"
]
}
},
{
"id":"3hodcoa_c",
"name":"(S)-3-Hydroxyoctadecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C39H66N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3hodcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hodcoa"
],
"biocyc":[
"META:CPD0-2253"
],
"chebi":[
"CHEBI:87561",
"CHEBI:50577"
],
"inchi_key":[
"WZMAIEGYXCOYSH-SFKGBVSGSA-J"
],
"lipidmaps":[
"LMFA07050159"
],
"metanetx.chemical":[
"MNXM31746"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15204"
]
}
},
{
"id":"bzal_c",
"name":"Benzaldehyde",
"compartment":"c",
"formula":"C7H6O",
"notes":{
"original_bigg_ids":[
"bzal_c"
]
},
"annotation":{
"bigg.metabolite":[
"bzal"
],
"biocyc":[
"META:BENZALDEHYDE"
],
"chebi":[
"CHEBI:17169",
"CHEBI:22697",
"CHEBI:3019",
"CHEBI:13875"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f77c5866-ffbb-46fb-b356-081f6ab77d27",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/7f0c6d5c-b055-4ee6-adbc-8838dd917f6b"
],
"hmdb":[
"HMDB06115"
],
"inchi_key":[
"HUMNYLRZRPPJDN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00261",
"C00193"
],
"kegg.drug":[
"D02314"
],
"metanetx.chemical":[
"MNXM371"
],
"reactome.compound":[
"5696154"
],
"sabiork":[
"2000"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11631",
"cpd00225"
]
}
},
{
"id":"3hpalmACP_c",
"name":"R-3-hydroxypalmitoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C27H51N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3hpalmACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hpalmACP"
],
"kegg.compound":[
"C04633"
],
"metanetx.chemical":[
"MNXM2576"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11481"
]
}
},
{
"id":"acgam6p_c",
"name":"N-Acetyl-D-glucosamine 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acgam6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"acgam6p"
],
"biocyc":[
"META:CPD-16168",
"META:N-ACETYL-D-GLUCOSAMINE-6-P"
],
"chebi":[
"CHEBI:49353",
"CHEBI:57513",
"CHEBI:49359",
"CHEBI:12456",
"CHEBI:15784",
"CHEBI:21521",
"CHEBI:7127",
"CHEBI:39577",
"CHEBI:12564"
],
"hmdb":[
"HMDB01062",
"HMDB02817"
],
"inchi_key":[
"BRGMHAYQAZFZDJ-RTRLPJTCSA-L"
],
"kegg.compound":[
"C00357"
],
"metanetx.chemical":[
"MNXM63556"
],
"reactome.compound":[
"449703"
],
"sabiork":[
"1676"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00293"
]
}
},
{
"id":"bzalc_c",
"name":"Benzyl alcohol",
"compartment":"c",
"formula":"C7H8O",
"notes":{
"original_bigg_ids":[
"bzalc_c"
]
},
"annotation":{
"bigg.metabolite":[
"bzalc"
],
"biocyc":[
"META:BENZYL-ALCOHOL"
],
"chebi":[
"CHEBI:22742",
"CHEBI:3053",
"CHEBI:17987",
"CHEBI:13888",
"CHEBI:25399"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c25af8cf-64f5-46a4-82c6-2bb1abee9484",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/f3c82224-615e-43dd-9ee6-2b290fb2d82d"
],
"hmdb":[
"HMDB03119"
],
"inchi_key":[
"WVDDGKGOMKODPV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00556",
"C03485"
],
"kegg.drug":[
"D00077"
],
"metanetx.chemical":[
"MNXM562"
],
"sabiork":[
"2093"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00435",
"cpd02199"
]
}
},
{
"id":"acglu_c",
"name":"N-Acetyl-L-glutamate",
"compartment":"c",
"charge":-2,
"formula":"C7H9NO5",
"notes":{
"original_bigg_ids":[
"acglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"acglu"
],
"biocyc":[
"META:ACETYL-GLU"
],
"chebi":[
"CHEBI:7150",
"CHEBI:17533",
"CHEBI:44337",
"CHEBI:44335",
"CHEBI:21549",
"CHEBI:87274",
"CHEBI:64040",
"CHEBI:12575",
"CHEBI:21552"
],
"inchi_key":[
"RFMMMVDNIPUKGG-YFKPBYRVSA-L"
],
"kegg.compound":[
"C00624"
],
"metanetx.chemical":[
"MNXM730"
],
"reactome.compound":[
"30471"
],
"sabiork":[
"2120"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00477"
]
}
},
{
"id":"3hpimcoa_c",
"name":"3-Hydroxypimelyl-CoA",
"compartment":"c",
"formula":"C28H46N7O20P3S",
"notes":{
"original_bigg_ids":[
"_3hpimcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hpimcoa"
],
"biocyc":[
"META:3-HYDROXYPIMELYL-COA"
],
"chebi":[
"CHEBI:1551",
"CHEBI:20077",
"CHEBI:57343",
"CHEBI:11834",
"CHEBI:15485"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f9aaa268-20f3-4ed0-83a9-a3cacf91b3bb"
],
"hmdb":[
"HMDB12155"
],
"inchi_key":[
"VGEBXBQECGWCRH-JXUSAFQPSA-I"
],
"kegg.compound":[
"C06714"
],
"lipidmaps":[
"LMFA07050224"
],
"metanetx.chemical":[
"MNXM2188"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04103"
]
}
},
{
"id":"bzsucc_c",
"name":"Benzylsuccinate",
"compartment":"c",
"charge":-2,
"formula":"C11H10O4",
"notes":{
"original_bigg_ids":[
"bzsucc_c"
]
},
"annotation":{
"bigg.metabolite":[
"bzsucc"
],
"biocyc":[
"META:BENZYLSUCCINATE"
],
"chebi":[
"CHEBI:16054",
"CHEBI:10969",
"CHEBI:41241",
"CHEBI:57621",
"CHEBI:3059",
"CHEBI:41240",
"CHEBI:22751",
"CHEBI:28962",
"CHEBI:13891",
"CHEBI:58692"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a03d05db-a20d-4109-8342-70ca82f8461d"
],
"hmdb":[
"HMDB12127"
],
"inchi_key":[
"GTOFKXZQQDSVFH-UHFFFAOYSA-L"
],
"kegg.compound":[
"C09816"
],
"metanetx.chemical":[
"MNXM2471"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd06708"
]
}
},
{
"id":"bzsuccoa_c",
"name":"Benzylsuccinyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C32H41N7O19P3S",
"notes":{
"original_bigg_ids":[
"bzsuccoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"bzsuccoa"
],
"biocyc":[
"META:BENZYLSUCCINYL-COA"
],
"chebi":[
"CHEBI:57253",
"CHEBI:10970",
"CHEBI:3060"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/63a3aee1-fcc6-4b0e-a8db-d50f13d0ebad"
],
"hmdb":[
"HMDB12129"
],
"inchi_key":[
"KIRGTNPWUTXDFF-PDQACDDGSA-I"
],
"kegg.compound":[
"C09817"
],
"metanetx.chemical":[
"MNXM2899"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd06709"
]
}
},
{
"id":"ca2_c",
"name":"Calcium",
"compartment":"c",
"charge":2,
"formula":"Ca",
"notes":{
"original_bigg_ids":[
"ca2_c"
]
},
"annotation":{
"bigg.metabolite":[
"ca2"
],
"biocyc":[
"META:CA+2"
],
"chebi":[
"CHEBI:29108",
"CHEBI:48760",
"CHEBI:39123",
"CHEBI:22988",
"CHEBI:3308"
],
"hmdb":[
"HMDB00464"
],
"inchi_key":[
"BHPQYMZQTOCNFJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00076"
],
"metanetx.chemical":[
"MNXM128"
],
"reactome.compound":[
"111875",
"167012",
"139827",
"74016",
"74112",
"1606834",
"2855229"
],
"sabiork":[
"1289"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29674",
"cpd00063"
]
}
},
{
"id":"3hppnl_c",
"name":"3-Hydroxypropanal",
"compartment":"c",
"formula":"C3H6O2",
"notes":{
"original_bigg_ids":[
"_3hppnl_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hppnl"
],
"biocyc":[
"META:HYDROXYPROPANAL"
],
"chebi":[
"CHEBI:1552",
"CHEBI:17871",
"CHEBI:20078",
"CHEBI:11835"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/6458b515-6bde-43bf-a85a-1f4c966ad3e6"
],
"hmdb":[
"HMDB03453"
],
"inchi_key":[
"AKXKFZDCRYJKTF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00969"
],
"metanetx.chemical":[
"MNXM1526"
],
"sabiork":[
"2198"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00714"
]
}
},
{
"id":"achms_c",
"name":"O Acetyl L homoserine C6H11NO4",
"compartment":"c",
"formula":"C6H11NO4",
"notes":{
"original_bigg_ids":[
"achms_c"
]
},
"annotation":{
"bigg.metabolite":[
"achms"
],
"biocyc":[
"META:CPD-667"
],
"chebi":[
"CHEBI:12709",
"CHEBI:21937",
"CHEBI:16288",
"CHEBI:7667",
"CHEBI:12684",
"CHEBI:57716"
],
"inchi_key":[
"FCXZBWSIAGGPCB-YFKPBYRVSA-N"
],
"kegg.compound":[
"C01077"
],
"metanetx.chemical":[
"MNXM699"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00790"
]
}
},
{
"id":"camp_c",
"name":"CAMP C10H11N5O6P",
"compartment":"c",
"charge":-1,
"formula":"C10H11N5O6P",
"notes":{
"original_bigg_ids":[
"camp_c"
]
},
"annotation":{
"bigg.metabolite":[
"camp"
],
"biocyc":[
"META:CAMP"
],
"chebi":[
"CHEBI:19827",
"CHEBI:11673",
"CHEBI:1325",
"CHEBI:17489",
"CHEBI:58165",
"CHEBI:41588"
],
"hmdb":[
"HMDB00058"
],
"inchi_key":[
"IVOMOUWHDPKRLL-KQYNXXCUSA-M"
],
"kegg.compound":[
"C00575"
],
"metanetx.chemical":[
"MNXM243"
],
"reactome.compound":[
"30389"
],
"sabiork":[
"1379"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00446"
]
}
},
{
"id":"acmana_c",
"name":"N-Acetyl-D-mannosamine",
"compartment":"c",
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acmana_c"
]
},
"annotation":{
"bigg.metabolite":[
"acmana"
],
"biocyc":[
"META:N-acetyl-D-mannosamine"
],
"chebi":[
"CHEBI:7141",
"CHEBI:12459",
"CHEBI:12573",
"CHEBI:58019",
"CHEBI:17122",
"CHEBI:63153",
"CHEBI:21538"
],
"hmdb":[
"HMDB62724"
],
"inchi_key":[
"MBLBDJOUHNCFQT-XAMCCFCMSA-N"
],
"kegg.compound":[
"C00645"
],
"metanetx.chemical":[
"MNXM2403"
],
"reactome.compound":[
"4085214"
],
"sabiork":[
"25302",
"1583"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00492"
]
}
},
{
"id":"campp_c",
"name":"3',5'-cyclic adenosine monophosphate-2'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C10H11N5O9P2",
"notes":{
"original_bigg_ids":[
"campp_c"
]
},
"annotation":{
"bigg.metabolite":[
"campp"
],
"metanetx.chemical":[
"MNXM147759"
],
"sbo":"SBO:0000247"
}
},
{
"id":"acmum6p_c",
"name":"N-acetylmuramate 6-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C11H17NO11P",
"notes":{
"original_bigg_ids":[
"acmum6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"acmum6p"
],
"chebi":[
"CHEBI:47968",
"CHEBI:58722"
],
"inchi_key":[
"NMEMTQKUEVNSPV-MKFCKLDKSA-K"
],
"kegg.compound":[
"C16698"
],
"metanetx.chemical":[
"MNXM90332"
],
"sabiork":[
"28082"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15391"
]
}
},
{
"id":"acnam_c",
"name":"N-Acetylneuraminate",
"compartment":"c",
"charge":-1,
"formula":"C11H18NO9",
"notes":{
"original_bigg_ids":[
"acnam_c"
]
},
"annotation":{
"bigg.metabolite":[
"acnam"
],
"biocyc":[
"META:N-ACETYLNEURAMINATE",
"META:CPD0-1123"
],
"chebi":[
"CHEBI:12471",
"CHEBI:45744",
"CHEBI:58705",
"CHEBI:17012",
"CHEBI:29087",
"CHEBI:7214",
"CHEBI:12579",
"CHEBI:35418",
"CHEBI:21617",
"CHEBI:21620",
"CHEBI:33987"
],
"hmdb":[
"HMDB00800",
"HMDB00230"
],
"inchi_key":[
"SQVRNKJHWKZAKO-LUWBGTNYSA-M"
],
"kegg.compound":[
"C00270",
"C19910"
],
"metanetx.chemical":[
"MNXM227"
],
"sabiork":[
"22759",
"2006"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27569",
"cpd21149",
"cpd00232"
]
}
},
{
"id":"3hptcoa_c",
"name":"3-Hydroxypentoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C26H40N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3hptcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hptcoa"
],
"metanetx.chemical":[
"MNXM147789"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3htdcoa_c",
"name":"(S)-3-Hydroxytetradecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C35H58N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3htdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3htdcoa"
],
"biocyc":[
"META:CPD0-2171"
],
"chebi":[
"CHEBI:400",
"CHEBI:18754",
"CHEBI:62614",
"CHEBI:27466"
],
"hmdb":[
"HMDB03934"
],
"inchi_key":[
"OXBHKMHNDGRDCZ-STLSENOWSA-J"
],
"kegg.compound":[
"C05260"
],
"lipidmaps":[
"LMFA07050257"
],
"metanetx.chemical":[
"MNXM767"
],
"reactome.compound":[
"77276"
],
"sabiork":[
"2737"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03115",
"cpd26436"
],
"slm":[
"000001020"
]
}
},
{
"id":"cbasp_c",
"name":"N-Carbamoyl-L-aspartate",
"compartment":"c",
"charge":-2,
"formula":"C5H6N2O5",
"notes":{
"original_bigg_ids":[
"cbasp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cbasp"
],
"biocyc":[
"META:CARBAMYUL-L-ASPARTATE"
],
"chebi":[
"CHEBI:12593",
"CHEBI:21687",
"CHEBI:21688",
"CHEBI:44316",
"CHEBI:12496",
"CHEBI:7257",
"CHEBI:32814",
"CHEBI:15859"
],
"hmdb":[
"HMDB00828"
],
"inchi_key":[
"HLKXYZVTANABHZ-REOHCLBHSA-L"
],
"kegg.compound":[
"C00438"
],
"metanetx.chemical":[
"MNXM465"
],
"reactome.compound":[
"111628"
],
"sabiork":[
"2049"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00343"
]
}
},
{
"id":"3ig3p_c",
"name":"C'-(3-Indolyl)-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C11H12NO6P",
"notes":{
"original_bigg_ids":[
"_3ig3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ig3p"
],
"biocyc":[
"META:INDOLE-3-GLYCEROL-P"
],
"chebi":[
"CHEBI:58866",
"CHEBI:51793"
],
"inchi_key":[
"NQEQTYPJSIEPHW-MNOVXSKESA-L"
],
"kegg.compound":[
"C03506"
],
"metanetx.chemical":[
"MNXM866"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02210",
"cpd29667"
]
}
},
{
"id":"acon_C_c",
"name":"Cis-Aconitate",
"compartment":"c",
"charge":-3,
"formula":"C6H3O6",
"notes":{
"original_bigg_ids":[
"acon_C_c"
]
},
"annotation":{
"bigg.metabolite":[
"acon_C"
],
"biocyc":[
"META:CIS-ACONITATE"
],
"chebi":[
"CHEBI:23306",
"CHEBI:16383",
"CHEBI:12798",
"CHEBI:32805",
"CHEBI:23308",
"CHEBI:10482"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/643481e5-a35b-477e-8665-70f4dca66baa"
],
"hmdb":[
"HMDB00461",
"HMDB00072"
],
"inchi_key":[
"GTZCVFVGUGFEME-IWQZZHSRSA-K"
],
"kegg.compound":[
"C00417"
],
"metanetx.chemical":[
"MNXM813"
],
"sabiork":[
"2043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00331"
]
}
},
{
"id":"acorn_c",
"name":"N2-Acetyl-L-ornithine",
"compartment":"c",
"formula":"C7H14N2O3",
"notes":{
"original_bigg_ids":[
"acorn_c"
]
},
"annotation":{
"bigg.metabolite":[
"acorn"
],
"biocyc":[
"META:N-ALPHA-ACETYLORNITHINE"
],
"chebi":[
"CHEBI:21814",
"CHEBI:7368",
"CHEBI:16543",
"CHEBI:57805",
"CHEBI:40771",
"CHEBI:12634"
],
"hmdb":[
"HMDB06489",
"HMDB03357"
],
"inchi_key":[
"JRLGPAXAGHMNOL-LURJTMIESA-N"
],
"kegg.compound":[
"C00437"
],
"metanetx.chemical":[
"MNXM817"
],
"sabiork":[
"2048"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00342"
]
}
},
{
"id":"cbi_c",
"name":"Cobinamide",
"compartment":"c",
"formula":"C48H72CoN11O8",
"notes":{
"original_bigg_ids":[
"cbi_c"
]
},
"annotation":{
"bigg.metabolite":[
"cbi"
],
"biocyc":[
"META:COBINAMIDE"
],
"chebi":[
"CHEBI:48529"
],
"inchi_key":[
"XQRJFEVDQXEIAX-JFYQDRLCSA-M"
],
"metanetx.chemical":[
"MNXM1549"
],
"sbo":"SBO:0000247"
}
},
{
"id":"acser_c",
"name":"O-Acetyl-L-serine",
"compartment":"c",
"formula":"C5H9NO4",
"notes":{
"original_bigg_ids":[
"acser_c"
]
},
"annotation":{
"bigg.metabolite":[
"acser"
],
"biocyc":[
"META:ACETYLSERINE"
],
"chebi":[
"CHEBI:44568",
"CHEBI:58340",
"CHEBI:7668",
"CHEBI:21938",
"CHEBI:12724",
"CHEBI:17981",
"CHEBI:12710",
"CHEBI:12685"
],
"hmdb":[
"HMDB03011"
],
"inchi_key":[
"VZXPDPZARILFQX-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00979"
],
"metanetx.chemical":[
"MNXM418"
],
"reactome.compound":[
"936709"
],
"sabiork":[
"2202"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00722"
]
}
},
{
"id":"3mb_c",
"name":"3-Methylbutanoic acid",
"compartment":"c",
"charge":-1,
"formula":"C5H9O2",
"notes":{
"original_bigg_ids":[
"_3mb_c"
]
},
"annotation":{
"bigg.metabolite":[
"3mb"
],
"biocyc":[
"META:ISOVALERATE"
],
"chebi":[
"CHEBI:24930",
"CHEBI:48942",
"CHEBI:6069",
"CHEBI:43426",
"CHEBI:28484"
],
"hmdb":[
"HMDB00718"
],
"inchi_key":[
"GWYFCOCPABKNJV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C08262"
],
"lipidmaps":[
"LMFA01020181"
],
"metanetx.chemical":[
"MNXM7454"
],
"sabiork":[
"10362"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd05178"
]
}
},
{
"id":"cbl1_c",
"name":"Cob(I)alamin",
"compartment":"c",
"charge":-1,
"formula":"C62H88CoN13O14P",
"notes":{
"original_bigg_ids":[
"cbl1_c"
]
},
"annotation":{
"bigg.metabolite":[
"cbl1"
],
"biocyc":[
"META:COB-I-ALAMIN"
],
"chebi":[
"CHEBI:60488",
"CHEBI:14004",
"CHEBI:15982",
"CHEBI:23328",
"CHEBI:3784"
],
"hmdb":[
"HMDB03429",
"HMDB06470"
],
"inchi_key":[
"OMAOKVYASDIYQG-DSRCUDDDSA-L"
],
"kegg.compound":[
"C00853"
],
"metanetx.chemical":[
"MNXM91519"
],
"reactome.compound":[
"3159260"
],
"sabiork":[
"5278"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3mb2coa_c",
"name":"3-Methylbut-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C26H38N7O17P3S",
"notes":{
"original_bigg_ids":[
"_3mb2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3mb2coa"
],
"biocyc":[
"META:3-METHYL-CROTONYL-COA"
],
"chebi":[
"CHEBI:11853",
"CHEBI:23802",
"CHEBI:27728",
"CHEBI:4615",
"CHEBI:1599",
"CHEBI:57344",
"CHEBI:20128",
"CHEBI:11858",
"CHEBI:15486"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/63be9529-6dc6-49ee-afef-6b6ddff4b097"
],
"hmdb":[
"HMDB01493"
],
"inchi_key":[
"BXIPALATIYNHJN-ZMHDXICWSA-J"
],
"kegg.compound":[
"C03069"
],
"lipidmaps":[
"LMFA07050232",
"LMFA07050234"
],
"metanetx.chemical":[
"MNXM389"
],
"reactome.compound":[
"70744"
],
"sabiork":[
"2652"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01966"
]
}
},
{
"id":"actACP_c",
"name":"Acetoacetyl-ACP",
"compartment":"c",
"charge":-1,
"formula":"C15H25N2O9PRS",
"notes":{
"original_bigg_ids":[
"actACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"actACP"
],
"biocyc":[
"META:Acetoacetyl-ACPs",
"META:Acetoacetyl-ACP"
],
"chebi":[
"CHEBI:2393"
],
"kegg.compound":[
"C05744"
],
"metanetx.chemical":[
"MNXM1223"
],
"sabiork":[
"8104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11488"
]
}
},
{
"id":"cbp_c",
"name":"Carbamoyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"CH2NO5P",
"notes":{
"original_bigg_ids":[
"cbp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cbp"
],
"biocyc":[
"META:CARBAMOYL-P"
],
"chebi":[
"CHEBI:13942",
"CHEBI:23005",
"CHEBI:3389",
"CHEBI:58228",
"CHEBI:17672",
"CHEBI:41567"
],
"hmdb":[
"HMDB01096"
],
"inchi_key":[
"FFQKYPRQEYGKAF-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00169"
],
"metanetx.chemical":[
"MNXM138"
],
"reactome.compound":[
"29676",
"111647"
],
"sabiork":[
"1311"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00146"
]
}
},
{
"id":"actp_c",
"name":"Acetyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C2H3O5P",
"notes":{
"original_bigg_ids":[
"actp_c"
]
},
"annotation":{
"bigg.metabolite":[
"actp"
],
"biocyc":[
"META:ACETYL-P"
],
"chebi":[
"CHEBI:13711",
"CHEBI:46262",
"CHEBI:15350",
"CHEBI:22191",
"CHEBI:2407"
],
"hmdb":[
"HMDB01494"
],
"inchi_key":[
"LIPOUNRJVLNBCD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00227"
],
"metanetx.chemical":[
"MNXM280"
],
"sabiork":[
"1316"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00196"
]
}
},
{
"id":"cd2_c",
"name":"Cadmium",
"compartment":"c",
"charge":2,
"formula":"Cd",
"notes":{
"original_bigg_ids":[
"cd2_c"
]
},
"annotation":{
"bigg.metabolite":[
"cd2"
],
"biocyc":[
"META:CD+2"
],
"chebi":[
"CHEBI:48773",
"CHEBI:3290",
"CHEBI:48775"
],
"hmdb":[
"HMDB03638"
],
"inchi_key":[
"WLZRMCYVCSSEQC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01413"
],
"metanetx.chemical":[
"MNXM4505"
],
"sabiork":[
"48"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01012"
]
}
},
{
"id":"cddec5eACP_c",
"name":"Cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1)",
"compartment":"c",
"charge":-1,
"formula":"C23H41N2O8PRS",
"notes":{
"original_bigg_ids":[
"cddec5eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"cddec5eACP"
],
"metanetx.chemical":[
"MNXM163784"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3mgcoa_c",
"name":"3-Methylglutaconyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C27H37N7O19P3S",
"notes":{
"original_bigg_ids":[
"_3mgcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3mgcoa"
],
"biocyc":[
"META:TRANS-3-METHYL-GLUTACONYL-COA"
],
"hmdb":[
"HMDB01057"
],
"inchi_key":[
"GXKSHRDAHFLWPN-RKYLSHMCSA-I"
],
"kegg.compound":[
"C03231"
],
"lipidmaps":[
"LMFA07050235"
],
"metanetx.chemical":[
"MNXM91417"
],
"reactome.compound":[
"70772"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02068"
]
}
},
{
"id":"cdec3eACP_c",
"name":"Cis-dec-3-enoyl-[acyl-carrier protein] (n-C10:1)",
"compartment":"c",
"charge":-1,
"formula":"C21H37N2O8PRS",
"notes":{
"original_bigg_ids":[
"cdec3eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdec3eACP"
],
"metanetx.chemical":[
"MNXM7186"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3mob_c",
"name":"3-Methyl-2-oxobutanoate",
"compartment":"c",
"charge":-1,
"formula":"C5H7O3",
"notes":{
"original_bigg_ids":[
"_3mob_c"
]
},
"annotation":{
"bigg.metabolite":[
"3mob"
],
"biocyc":[
"META:2-KETO-ISOVALERATE"
],
"chebi":[
"CHEBI:11851",
"CHEBI:43714",
"CHEBI:132177",
"CHEBI:20115",
"CHEBI:1584",
"CHEBI:16530"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/dee66401-4b7f-4203-8ee3-fa61f1f45f03"
],
"hmdb":[
"HMDB04260",
"HMDB00019"
],
"inchi_key":[
"QHKABHOOEWYVLI-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00141"
],
"lipidmaps":[
"LMFA01020274"
],
"metanetx.chemical":[
"MNXM238"
],
"sabiork":[
"1945"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00123"
]
}
},
{
"id":"adcobdam_c",
"name":"Adenosyl cobyrinate diamide",
"compartment":"c",
"charge":-4,
"formula":"C55H68CoN11O15",
"notes":{
"original_bigg_ids":[
"adcobdam_c"
]
},
"annotation":{
"bigg.metabolite":[
"adcobdam"
],
"inchi_key":[
"OCNLJCZKGHKJGF-QOCQOLRHSA-N"
],
"metanetx.chemical":[
"MNXM92085"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03916"
]
}
},
{
"id":"cdg_c",
"name":"7-deaza-7-carboxyguanine",
"compartment":"c",
"charge":-1,
"formula":"C7H5N4O3",
"notes":{
"original_bigg_ids":[
"cdg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdg"
],
"biocyc":[
"META:CPD-13043"
],
"chebi":[
"CHEBI:61125",
"CHEBI:61036"
],
"inchi_key":[
"XIUIRSLBMMTDSK-UHFFFAOYSA-M"
],
"kegg.compound":[
"C20248"
],
"metanetx.chemical":[
"MNXM5026"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21481"
]
}
},
{
"id":"adcobhex_c",
"name":"Adenosyl-cobyric acid",
"compartment":"c",
"formula":"C55H76CoN15O11",
"notes":{
"original_bigg_ids":[
"adcobhex_c"
]
},
"annotation":{
"bigg.metabolite":[
"adcobhex"
],
"biocyc":[
"META:CPD-691"
],
"chebi":[
"CHEBI:2483",
"CHEBI:58504"
],
"inchi_key":[
"AXZSUSWNAXMBBB-NQYRMHKHSA-L"
],
"kegg.compound":[
"C06507"
],
"metanetx.chemical":[
"MNXM877"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03917"
]
}
},
{
"id":"3mop_c",
"name":"(S)-3-Methyl-2-oxopentanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O3",
"notes":{
"original_bigg_ids":[
"_3mop_c"
]
},
"annotation":{
"bigg.metabolite":[
"3mop"
],
"biocyc":[
"META:2-KETO-3-METHYL-VALERATE"
],
"chebi":[
"CHEBI:18568",
"CHEBI:401",
"CHEBI:213",
"CHEBI:18567",
"CHEBI:35146",
"CHEBI:18755",
"CHEBI:11049",
"CHEBI:10888",
"CHEBI:15614"
],
"inchi_key":[
"JVQYSWDUAOAHFM-BYPYZUCNSA-M"
],
"kegg.compound":[
"C00671"
],
"lipidmaps":[
"LMFA01020275"
],
"metanetx.chemical":[
"MNXM439"
],
"sabiork":[
"5174"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00508"
]
}
},
{
"id":"cdhxfut_c",
"name":"Cyclic de-hypoxanthine futalosine",
"compartment":"c",
"charge":-1,
"formula":"C14H13O7",
"notes":{
"original_bigg_ids":[
"cdhxfut_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdhxfut"
],
"biocyc":[
"META:CPD-11419"
],
"chebi":[
"CHEBI:64270",
"CHEBI:64252"
],
"inchi_key":[
"BAUPPZJHTWBQAS-ZZWXXDIBSA-M"
],
"kegg.compound":[
"C17017"
],
"metanetx.chemical":[
"MNXM7216"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd17281"
]
}
},
{
"id":"3ocddec5eACP_c",
"name":"3-oxo-cis-dodec-5-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C23H39N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3ocddec5eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ocddec5eACP"
],
"metanetx.chemical":[
"MNXM6837"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15373"
]
}
},
{
"id":"ade_c",
"name":"Adenine",
"compartment":"c",
"formula":"C5H5N5",
"notes":{
"original_bigg_ids":[
"ade_c"
]
},
"annotation":{
"bigg.metabolite":[
"ade"
],
"biocyc":[
"META:ADENINE",
"META:ADENINE-RING"
],
"chebi":[
"CHEBI:16708",
"CHEBI:22236",
"CHEBI:40579",
"CHEBI:13733",
"CHEBI:2470"
],
"hmdb":[
"HMDB00034"
],
"inchi_key":[
"GFFGJBXGBJISGV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00147"
],
"kegg.drug":[
"D00034"
],
"metanetx.chemical":[
"MNXM168"
],
"reactome.compound":[
"83951"
],
"sabiork":[
"57"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00128",
"cpd22238"
]
}
},
{
"id":"adn_c",
"name":"Adenosine",
"compartment":"c",
"formula":"C10H13N5O4",
"notes":{
"original_bigg_ids":[
"adn_c"
]
},
"annotation":{
"bigg.metabolite":[
"adn"
],
"biocyc":[
"META:ADENOSINE"
],
"chebi":[
"CHEBI:22237",
"CHEBI:13734",
"CHEBI:40558",
"CHEBI:16335",
"CHEBI:40906",
"CHEBI:40911",
"CHEBI:40825",
"CHEBI:2472"
],
"hmdb":[
"HMDB04402",
"HMDB00050",
"HMDB04421",
"HMDB04401"
],
"inchi_key":[
"OIRDTQYFTABQOQ-KQYNXXCUSA-N"
],
"kegg.compound":[
"C00212"
],
"kegg.drug":[
"D00045"
],
"metanetx.chemical":[
"MNXM212"
],
"reactome.compound":[
"83908",
"83909",
"8857850"
],
"sabiork":[
"1402"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00182"
]
}
},
{
"id":"cdiamp_c",
"name":"Cyclic diadenosine monophosphate",
"compartment":"c",
"charge":-2,
"formula":"C20H22N10O12P2",
"notes":{
"original_bigg_ids":[
"cdiamp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdiamp"
],
"metanetx.chemical":[
"MNXM149004"
],
"sbo":"SBO:0000247"
}
},
{
"id":"adocbi_c",
"name":"Adenosyl cobinamide",
"compartment":"c",
"charge":1,
"formula":"C58H84CoN16O11",
"notes":{
"original_bigg_ids":[
"adocbi_c"
]
},
"annotation":{
"bigg.metabolite":[
"adocbi"
],
"biocyc":[
"META:ADENOSYLCOBINAMIDE"
],
"hmdb":[
"HMDB06964",
"HMDB06903"
],
"inchi_key":[
"KQXSPGAEBZWHMC-OCUXTBADSA-N"
],
"kegg.compound":[
"C06508"
],
"metanetx.chemical":[
"MNXM90790"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03918"
]
}
},
{
"id":"3ocmrs7eACP_c",
"name":"3-oxo-cis-myristol-7-eoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C25H43N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3ocmrs7eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ocmrs7eACP"
],
"metanetx.chemical":[
"MNXM6838"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15374"
]
}
},
{
"id":"cdigmp_c",
"name":"Cyclic diguanosine monophosphate",
"compartment":"c",
"charge":-2,
"formula":"C20H22N10O14P2",
"notes":{
"original_bigg_ids":[
"cdigmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdigmp"
],
"metanetx.chemical":[
"MNXM148172"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3ocpalm9eACP_c",
"name":"3-oxo-cis-palm-9-eoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C27H47N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3ocpalm9eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ocpalm9eACP"
],
"metanetx.chemical":[
"MNXM6839"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15375"
]
}
},
{
"id":"adocbip_c",
"name":"Adenosyl cobinamide phosphate",
"compartment":"c",
"charge":-1,
"formula":"C58H83CoN16O14P",
"notes":{
"original_bigg_ids":[
"adocbip_c"
]
},
"annotation":{
"bigg.metabolite":[
"adocbip"
],
"biocyc":[
"META:ADENOSYLCOBINAMIDE-P"
],
"chebi":[
"CHEBI:2481",
"CHEBI:58502"
],
"hmdb":[
"HMDB12184"
],
"inchi_key":[
"MQCMBMUJJHSGIF-QMUWONGRSA-K"
],
"kegg.compound":[
"C06509"
],
"metanetx.chemical":[
"MNXM856"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03919"
]
}
},
{
"id":"cdp_c",
"name":"CDP C9H12N3O11P2",
"compartment":"c",
"charge":-3,
"formula":"C9H12N3O11P2",
"notes":{
"original_bigg_ids":[
"cdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdp"
],
"biocyc":[
"META:CDP"
],
"chebi":[
"CHEBI:41451",
"CHEBI:23519",
"CHEBI:3260",
"CHEBI:13254",
"CHEBI:17239",
"CHEBI:58069"
],
"hmdb":[
"HMDB01546"
],
"inchi_key":[
"ZWIADYZPOWUWEW-XVFCMESISA-K"
],
"kegg.compound":[
"C00112"
],
"metanetx.chemical":[
"MNXM220"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00096"
]
}
},
{
"id":"adocbl_c",
"name":"Adenosylcobalamin",
"compartment":"c",
"formula":"C72H100CoN18O17P",
"notes":{
"original_bigg_ids":[
"adocbl_c"
]
},
"annotation":{
"bigg.metabolite":[
"adocbl"
],
"biocyc":[
"META:ADENOSYLCOBALAMIN"
],
"hmdb":[
"HMDB02086"
],
"inchi_key":[
"ZIHHMGTYZOSFRC-QRVZQHAISA-N"
],
"kegg.compound":[
"C00194"
],
"kegg.drug":[
"D00042"
],
"metanetx.chemical":[
"MNXM90703"
],
"reactome.compound":[
"3159297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00166"
]
}
},
{
"id":"3ocvac11eACP_c",
"name":"3-oxo-cis-vacc-11-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C29H51N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3ocvac11eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ocvac11eACP"
],
"metanetx.chemical":[
"MNXM6840"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15376"
]
}
},
{
"id":"cdpdddecg_c",
"name":"CDP-1,2-didodecanoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C36H63N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdddecg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdddecg"
],
"metanetx.chemical":[
"MNXM4507"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15417"
]
}
},
{
"id":"3odcoa_c",
"name":"3-Oxodecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C31H48N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3odcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3odcoa"
],
"biocyc":[
"META:CPD0-2123"
],
"chebi":[
"CHEBI:1633",
"CHEBI:28528",
"CHEBI:20166",
"CHEBI:62548"
],
"hmdb":[
"HMDB03939",
"HMDB06349"
],
"inchi_key":[
"AZCVXMAPLHSIKY-HSJNEKGZSA-J"
],
"kegg.compound":[
"C05265"
],
"lipidmaps":[
"LMFA07050239"
],
"metanetx.chemical":[
"MNXM677"
],
"reactome.compound":[
"77339"
],
"sabiork":[
"21032",
"2742"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03119"
],
"slm":[
"000001028"
]
}
},
{
"id":"adp_c",
"name":"ADP C10H12N5O10P2",
"compartment":"c",
"charge":-3,
"formula":"C10H12N5O10P2",
"notes":{
"original_bigg_ids":[
"adp_c"
]
},
"annotation":{
"bigg.metabolite":[
"adp"
],
"biocyc":[
"META:ADP"
],
"chebi":[
"CHEBI:2342",
"CHEBI:16761",
"CHEBI:456216",
"CHEBI:40553",
"CHEBI:22244",
"CHEBI:87518",
"CHEBI:13222"
],
"hmdb":[
"HMDB01341"
],
"inchi_key":[
"XTWYTFMLZFPYCI-KQYNXXCUSA-K"
],
"kegg.compound":[
"C00008"
],
"kegg.glycan":[
"G11113"
],
"metanetx.chemical":[
"MNXM7"
],
"reactome.compound":[
"114565",
"211606",
"114564",
"6798177",
"5632457",
"5696026",
"8869360",
"29370",
"113581",
"113582"
],
"sabiork":[
"35"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00008"
]
}
},
{
"id":"cdpdhdec9eg_c",
"name":"CDP-1,2-dihexadec-9-enoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C44H75N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdhdec9eg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdhdec9eg"
],
"chebi":[
"CHEBI:104012"
],
"inchi_key":[
"LBKBJHVQQNUXGQ-BQUKFSKHSA-L"
],
"metanetx.chemical":[
"MNXM4508"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15418"
]
}
},
{
"id":"adpglc_c",
"name":"ADPglucose C16H23N5O15P2",
"compartment":"c",
"charge":-2,
"formula":"C16H23N5O15P2",
"notes":{
"original_bigg_ids":[
"adpglc_c"
]
},
"annotation":{
"bigg.metabolite":[
"adpglc"
],
"biocyc":[
"META:ADP-D-GLUCOSE"
],
"chebi":[
"CHEBI:40615",
"CHEBI:20846",
"CHEBI:57498",
"CHEBI:13230",
"CHEBI:15751",
"CHEBI:2349"
],
"hmdb":[
"HMDB62621",
"HMDB06557",
"HMDB12186"
],
"inchi_key":[
"WFPZSXYXPSUOPY-ROYWQJLOSA-L"
],
"kegg.compound":[
"C00498"
],
"kegg.glycan":[
"G11109"
],
"metanetx.chemical":[
"MNXM561"
],
"sabiork":[
"3922"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00387"
]
}
},
{
"id":"3oddcoa_c",
"name":"3-Oxododecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C33H52N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3oddcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3oddcoa"
],
"biocyc":[
"META:CPD0-2105"
],
"chebi":[
"CHEBI:1636",
"CHEBI:20169",
"CHEBI:62615",
"CHEBI:27868"
],
"hmdb":[
"HMDB62368",
"HMDB06350",
"HMDB03937"
],
"inchi_key":[
"HQANBZHVWIDNQZ-GMHMEAMDSA-J"
],
"kegg.compound":[
"C05263"
],
"lipidmaps":[
"LMFA07050013",
"LMFA07050247"
],
"metanetx.chemical":[
"MNXM705"
],
"reactome.compound":[
"77253"
],
"sabiork":[
"2740"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03117"
],
"slm":[
"000001024"
]
}
},
{
"id":"cdpdhdecg_c",
"name":"CDP-1,2-dihexadecanoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C44H79N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdhdecg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdhdecg"
],
"metanetx.chemical":[
"MNXM3232"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15419"
]
}
},
{
"id":"3oddecACP_c",
"name":"3-Oxododecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C23H41N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3oddecACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3oddecACP"
],
"biocyc":[
"META:3-oxo-dodecanoyl-ACPs"
],
"chebi":[
"CHEBI:1637"
],
"kegg.compound":[
"C05756"
],
"lipidmaps":[
"LMFA07060014"
],
"metanetx.chemical":[
"MNXM28933"
],
"sabiork":[
"8116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11489"
]
}
},
{
"id":"cdpdodec11eg_c",
"name":"CDP-1,2-dioctadec-11-enoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C48H83N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdodec11eg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdodec11eg"
],
"chebi":[
"CHEBI:104362"
],
"inchi_key":[
"KISJWPWNABZPGN-IGIWICMZSA-L"
],
"metanetx.chemical":[
"MNXM4509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15420"
]
}
},
{
"id":"3odecACP_c",
"name":"3-Oxodecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C21H37N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3odecACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3odecACP"
],
"biocyc":[
"META:3-oxo-decanoyl-ACPs"
],
"chebi":[
"CHEBI:1634"
],
"kegg.compound":[
"C05753"
],
"lipidmaps":[
"LMFA07060011"
],
"metanetx.chemical":[
"MNXM26616"
],
"sabiork":[
"8113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11487"
]
}
},
{
"id":"adphep_DD_c",
"name":"ADP-D-glycero-D-manno-heptose",
"compartment":"c",
"charge":-2,
"formula":"C17H25N5O16P2",
"notes":{
"original_bigg_ids":[
"adphep_DD_c"
]
},
"annotation":{
"bigg.metabolite":[
"adphep_DD"
],
"biocyc":[
"META:ADP-D-GLYCERO-D-MANNO-HEPTOSE"
],
"chebi":[
"CHEBI:57863",
"CHEBI:59966",
"CHEBI:13223",
"CHEBI:59967",
"CHEBI:16693",
"CHEBI:2343",
"CHEBI:20842"
],
"inchi_key":[
"KMSFWBYFWSKGGR-FQBROAFUSA-L"
],
"kegg.compound":[
"C06397"
],
"metanetx.chemical":[
"MNXM1648"
],
"sabiork":[
"1588"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03830",
"cpd29671"
]
}
},
{
"id":"cdpdodecg_c",
"name":"CDP-1,2-dioctadecanoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C48H87N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdodecg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdodecg"
],
"biocyc":[
"META:CPD-12814"
],
"chebi":[
"CHEBI:104121"
],
"inchi_key":[
"PDCWLWQTNQCGRI-IGIWICMZSA-L"
],
"metanetx.chemical":[
"MNXM45856"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15421"
]
}
},
{
"id":"adphep_LD_c",
"name":"ADP-L-glycero-D-manno-heptose",
"compartment":"c",
"charge":-2,
"formula":"C17H25N5O16P2",
"notes":{
"original_bigg_ids":[
"adphep_LD_c"
]
},
"annotation":{
"bigg.metabolite":[
"adphep_LD"
],
"biocyc":[
"META:ADP-L-GLYCERO-D-MANNO-HEPTOSE"
],
"chebi":[
"CHEBI:57564",
"CHEBI:15915",
"CHEBI:61506",
"CHEBI:20844",
"CHEBI:2347",
"CHEBI:61530",
"CHEBI:13226"
],
"inchi_key":[
"KMSFWBYFWSKGGR-DTBZDYEHSA-L"
],
"kegg.compound":[
"C06398"
],
"metanetx.chemical":[
"MNXM857"
],
"sabiork":[
"1589"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03831"
]
}
},
{
"id":"3ohcoa_c",
"name":"3-Oxohexanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C27H40N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3ohcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ohcoa"
],
"biocyc":[
"META:K-HEXANOYL-COA"
],
"chebi":[
"CHEBI:27648",
"CHEBI:1641",
"CHEBI:62418",
"CHEBI:20172"
],
"hmdb":[
"HMDB62372",
"HMDB03943"
],
"inchi_key":[
"NFOYYXQAVVYWKV-HDRQGHTBSA-J"
],
"kegg.compound":[
"C05269"
],
"lipidmaps":[
"LMFA07050018",
"LMFA07050242"
],
"metanetx.chemical":[
"MNXM717"
],
"reactome.compound":[
"77320"
],
"sabiork":[
"2746"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03123"
],
"slm":[
"000001031"
]
}
},
{
"id":"cdpdtdec7eg_c",
"name":"CDP-1,2-ditetradec-7-enoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C40H67N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdtdec7eg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdtdec7eg"
],
"chebi":[
"CHEBI:103990"
],
"inchi_key":[
"VDJIEKQUDMPHPA-WNAWUNHNSA-L"
],
"metanetx.chemical":[
"MNXM4511"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15422"
]
}
},
{
"id":"3ohdcoa_c",
"name":"3-Oxohexadecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C37H60N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3ohdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ohdcoa"
],
"biocyc":[
"META:3-OXOPALMITOYL-COA"
],
"chebi":[
"CHEBI:1647",
"CHEBI:20176",
"CHEBI:57349",
"CHEBI:11875",
"CHEBI:15491"
],
"hmdb":[
"HMDB06402"
],
"inchi_key":[
"NQMPLXPCRJOSHL-BBECNAHFSA-J"
],
"kegg.compound":[
"C05259"
],
"lipidmaps":[
"LMFA07050250"
],
"metanetx.chemical":[
"MNXM738"
],
"reactome.compound":[
"77302"
],
"sabiork":[
"2736"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03114"
],
"slm":[
"000000869"
]
}
},
{
"id":"adprib_c",
"name":"ADPribose C15H21N5O14P2",
"compartment":"c",
"charge":-2,
"formula":"C15H21N5O14P2",
"notes":{
"original_bigg_ids":[
"adprib_c"
]
},
"annotation":{
"bigg.metabolite":[
"adprib"
],
"biocyc":[
"META:ADENOSINE_DIPHOSPHATE_RIBOSE"
],
"chebi":[
"CHEBI:20850",
"CHEBI:16960",
"CHEBI:13231",
"CHEBI:40752",
"CHEBI:2351",
"CHEBI:57967",
"CHEBI:32889"
],
"inchi_key":[
"SRNWOUGRCWSEMX-TYASJMOZSA-L"
],
"kegg.compound":[
"C00301",
"C01882"
],
"metanetx.chemical":[
"MNXM48596"
],
"reactome.compound":[
"2393945",
"8870342",
"1131972"
],
"sabiork":[
"3120"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01296",
"cpd00251"
]
}
},
{
"id":"agdpcbi_c",
"name":"Adenosine-GDP-cobinamide",
"compartment":"c",
"charge":-1,
"formula":"C68H95CoN21O21P2",
"notes":{
"original_bigg_ids":[
"agdpcbi_c"
]
},
"annotation":{
"bigg.metabolite":[
"agdpcbi"
],
"biocyc":[
"META:ADENOSYLCOBINAMIDE-GDP"
],
"chebi":[
"CHEBI:2479",
"CHEBI:60487"
],
"hmdb":[
"HMDB12185"
],
"inchi_key":[
"IQTYKHRKNGVJEO-RRMAJTJESA-K"
],
"kegg.compound":[
"C06510"
],
"metanetx.chemical":[
"MNXM1105"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03920"
]
}
},
{
"id":"cdpdtdecg_c",
"name":"CDP-1,2-ditetradecanoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C40H71N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdtdecg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdtdecg"
],
"biocyc":[
"META:CPD-18388"
],
"chebi":[
"CHEBI:103211"
],
"inchi_key":[
"ICFWXMWHAMIZGF-WNAWUNHNSA-L"
],
"metanetx.chemical":[
"MNXM4512"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15423"
]
}
},
{
"id":"agm_c",
"name":"Agmatine",
"compartment":"c",
"charge":2,
"formula":"C5H16N4",
"notes":{
"original_bigg_ids":[
"agm_c"
]
},
"annotation":{
"bigg.metabolite":[
"agm"
],
"biocyc":[
"META:AGMATHINE"
],
"chebi":[
"CHEBI:17431",
"CHEBI:2514",
"CHEBI:18576",
"CHEBI:13747",
"CHEBI:58145",
"CHEBI:40556"
],
"hmdb":[
"HMDB60259",
"HMDB01432"
],
"inchi_key":[
"QYPPJABKJHAVHS-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00179"
],
"metanetx.chemical":[
"MNXM328"
],
"reactome.compound":[
"351164"
],
"sabiork":[
"4059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00152"
]
}
},
{
"id":"ahcys_c",
"name":"S-Adenosyl-L-homocysteine",
"compartment":"c",
"formula":"C14H20N6O5S",
"notes":{
"original_bigg_ids":[
"ahcys_c"
]
},
"annotation":{
"bigg.metabolite":[
"ahcys"
],
"biocyc":[
"META:ADENOSYL-HOMO-CYS"
],
"chebi":[
"CHEBI:12741",
"CHEBI:45495",
"CHEBI:8945",
"CHEBI:16680",
"CHEBI:67009",
"CHEBI:22034",
"CHEBI:57856",
"CHEBI:12761",
"CHEBI:12759"
],
"hmdb":[
"HMDB00939"
],
"inchi_key":[
"ZJUKTBDSGOFHSH-WFMPWKQPSA-N"
],
"kegg.compound":[
"C00021"
],
"metanetx.chemical":[
"MNXM19"
],
"reactome.compound":[
"2162252",
"77502",
"5278409",
"71285"
],
"sabiork":[
"1274"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00019"
]
}
},
{
"id":"3ohexACP_c",
"name":"3-Oxohexanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C17H29N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3ohexACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ohexACP"
],
"biocyc":[
"META:3-oxo-hexanoyl-ACPs"
],
"chebi":[
"CHEBI:1642"
],
"kegg.compound":[
"C05746"
],
"lipidmaps":[
"LMFA07060005"
],
"metanetx.chemical":[
"MNXM25602"
],
"sabiork":[
"8106"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11486"
]
}
},
{
"id":"3omrsACP_c",
"name":"3-Oxotetradecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C25H45N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3omrsACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3omrsACP"
],
"biocyc":[
"META:3-oxo-myristoyl-ACPs"
],
"chebi":[
"CHEBI:1655"
],
"kegg.compound":[
"C05759"
],
"lipidmaps":[
"LMFA07060017"
],
"metanetx.chemical":[
"MNXM26095"
],
"sabiork":[
"8119"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11491"
]
}
},
{
"id":"3oocoa_c",
"name":"3-Oxooctanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C29H44N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3oocoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3oocoa"
],
"biocyc":[
"META:CPD0-2106"
],
"chebi":[
"CHEBI:20175",
"CHEBI:28264",
"CHEBI:62619",
"CHEBI:1645"
],
"inchi_key":[
"WPIVBCGRGVNDDT-CECATXLMSA-J"
],
"kegg.compound":[
"C05267"
],
"lipidmaps":[
"LMFA07050249"
],
"metanetx.chemical":[
"MNXM706"
],
"reactome.compound":[
"77328"
],
"sabiork":[
"2744"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03121"
],
"slm":[
"000001026"
]
}
},
{
"id":"ch15deccoa_c",
"name":"Cyclohexa-1,5-dienecarbonyl-CoA",
"compartment":"c",
"formula":"C28H42N7O17P3S",
"notes":{
"original_bigg_ids":[
"ch15deccoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ch15deccoa"
],
"biocyc":[
"META:CYCLOHEXA-15-DIENE-1-CARBONYL-COA"
],
"chebi":[
"CHEBI:15520",
"CHEBI:14048",
"CHEBI:57374",
"CHEBI:8938",
"CHEBI:23460",
"CHEBI:14049",
"CHEBI:22023"
],
"inchi_key":[
"IHXBZDHPKCDGKN-TYHXJLICSA-J"
],
"kegg.compound":[
"C06322"
],
"lipidmaps":[
"LMFA07050310"
],
"metanetx.chemical":[
"MNXM1657"
],
"sabiork":[
"8540"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03763"
]
}
},
{
"id":"3ooctACP_c",
"name":"3-Oxooctanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C19H33N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3ooctACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ooctACP"
],
"biocyc":[
"META:3-Oxo-octanoyl-ACPs"
],
"chebi":[
"CHEBI:1646"
],
"kegg.compound":[
"C05750"
],
"lipidmaps":[
"LMFA07060008"
],
"metanetx.chemical":[
"MNXM28031"
],
"sabiork":[
"8110"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11490"
]
}
},
{
"id":"ahdt_c",
"name":"2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine triphosphate",
"compartment":"c",
"charge":-4,
"formula":"C9H12N5O13P3",
"notes":{
"original_bigg_ids":[
"ahdt_c"
]
},
"annotation":{
"bigg.metabolite":[
"ahdt"
],
"biocyc":[
"META:DIHYDRONEOPTERIN-P3"
],
"chebi":[
"CHEBI:19455",
"CHEBI:18372",
"CHEBI:20684",
"CHEBI:28069",
"CHEBI:58462",
"CHEBI:1002",
"CHEBI:11509",
"CHEBI:12201"
],
"hmdb":[
"HMDB12181",
"HMDB01144",
"HMDB00980"
],
"inchi_key":[
"DGGUVLXVLHAAGT-XINAWCOVSA-J"
],
"kegg.compound":[
"C04895"
],
"metanetx.chemical":[
"MNXM397"
],
"reactome.compound":[
"1474124"
],
"sabiork":[
"7657",
"25345"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02978"
]
}
},
{
"id":"chor_c",
"name":"Chorismate",
"compartment":"c",
"charge":-2,
"formula":"C10H8O6",
"notes":{
"original_bigg_ids":[
"chor_c"
]
},
"annotation":{
"bigg.metabolite":[
"chor"
],
"biocyc":[
"META:CHORISMATE"
],
"chebi":[
"CHEBI:23225",
"CHEBI:3677",
"CHEBI:23227",
"CHEBI:17333",
"CHEBI:29748",
"CHEBI:13993"
],
"hmdb":[
"HMDB12199"
],
"inchi_key":[
"WTFXTQVDAKGDEY-HTQZYQBOSA-L"
],
"kegg.compound":[
"C00251"
],
"metanetx.chemical":[
"MNXM337"
],
"reactome.compound":[
"964856"
],
"sabiork":[
"1992"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00216"
]
}
},
{
"id":"ahop_c",
"name":"Adenosylhopane",
"compartment":"c",
"formula":"C40H63N5O3",
"notes":{
"original_bigg_ids":[
"ahop_c"
]
},
"annotation":{
"bigg.metabolite":[
"ahop"
],
"biocyc":[
"META:CPD-14522"
],
"chebi":[
"CHEBI:86403"
],
"inchi_key":[
"YCIUCIBXUZOYMY-WCEMGWLASA-N"
],
"kegg.compound":[
"C21117"
],
"lipidmaps":[
"LMPR04000012"
],
"metanetx.chemical":[
"MNXM97442"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3ooctdACP_c",
"name":"3-Oxooctadecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C29H53N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3ooctdACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ooctdACP"
],
"metanetx.chemical":[
"MNXM3491"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15377"
]
}
},
{
"id":"aicar_c",
"name":"5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide",
"compartment":"c",
"charge":-2,
"formula":"C9H13N4O8P",
"notes":{
"original_bigg_ids":[
"aicar_c"
]
},
"annotation":{
"bigg.metabolite":[
"aicar"
],
"biocyc":[
"META:AICAR"
],
"chebi":[
"CHEBI:573",
"CHEBI:12102",
"CHEBI:40739",
"CHEBI:58475",
"CHEBI:18406",
"CHEBI:18966"
],
"hmdb":[
"HMDB01517"
],
"inchi_key":[
"NOTGFIUVDGNKRI-UUOKFMHZSA-L"
],
"kegg.compound":[
"C04677"
],
"metanetx.chemical":[
"MNXM365"
],
"reactome.compound":[
"111409"
],
"sabiork":[
"1891"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02851"
]
}
},
{
"id":"cit_c",
"name":"Citrate",
"compartment":"c",
"charge":-3,
"formula":"C6H5O7",
"notes":{
"original_bigg_ids":[
"cit_c"
]
},
"annotation":{
"bigg.metabolite":[
"cit"
],
"biocyc":[
"META:CIT"
],
"chebi":[
"CHEBI:35802",
"CHEBI:133748",
"CHEBI:35809",
"CHEBI:76049",
"CHEBI:41523",
"CHEBI:35810",
"CHEBI:30769",
"CHEBI:13999",
"CHEBI:23322",
"CHEBI:35808",
"CHEBI:42563",
"CHEBI:16947",
"CHEBI:132362",
"CHEBI:35804",
"CHEBI:23321",
"CHEBI:3727",
"CHEBI:35806"
],
"hmdb":[
"HMDB00094"
],
"inchi_key":[
"KRKNYBCHXYNGOX-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00158"
],
"kegg.drug":[
"D00037"
],
"metanetx.chemical":[
"MNXM131"
],
"reactome.compound":[
"29654",
"433138",
"76190"
],
"sabiork":[
"1952"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00137"
]
}
},
{
"id":"air_c",
"name":"5-amino-1-(5-phospho-D-ribosyl)imidazole",
"compartment":"c",
"charge":-2,
"formula":"C8H12N3O7P",
"notes":{
"original_bigg_ids":[
"air_c"
]
},
"annotation":{
"bigg.metabolite":[
"air"
],
"chebi":[
"CHEBI:28843",
"CHEBI:12101",
"CHEBI:18969",
"CHEBI:2655",
"CHEBI:58592"
],
"hmdb":[
"HMDB62575"
],
"inchi_key":[
"PDACUKOKVHBVHJ-ZRTZXPPTSA-M"
],
"metanetx.chemical":[
"MNXM162266"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3ohodcoa_c",
"name":"3-Oxooctadecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C39H64N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3oodcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ohodcoa"
],
"biocyc":[
"META:CPD-10260"
],
"chebi":[
"CHEBI:50571",
"CHEBI:71407"
],
"hmdb":[
"HMDB06498"
],
"inchi_key":[
"LGOGWHDPDVAUNY-LFZQUHGESA-J"
],
"kegg.compound":[
"C16216"
],
"lipidmaps":[
"LMFA07050248"
],
"metanetx.chemical":[
"MNXM513"
],
"reactome.compound":[
"548812"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14935"
],
"slm":[
"000000487"
]
}
},
{
"id":"citac_c",
"name":"Citraconate",
"compartment":"c",
"charge":-2,
"formula":"C5H4O4",
"notes":{
"original_bigg_ids":[
"citac_c"
]
},
"annotation":{
"bigg.metabolite":[
"citac"
],
"biocyc":[
"META:2-METHYLMALEATE"
],
"chebi":[
"CHEBI:17626",
"CHEBI:19704",
"CHEBI:30719",
"CHEBI:19703",
"CHEBI:1207",
"CHEBI:11623"
],
"hmdb":[
"HMDB00634"
],
"inchi_key":[
"HNEGQIOMVPPMNR-IHWYPQMZSA-L"
],
"kegg.compound":[
"C02226"
],
"lipidmaps":[
"LMFA01170099"
],
"metanetx.chemical":[
"MNXM2356"
],
"sabiork":[
"2388"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01502"
]
}
},
{
"id":"3opalmACP_c",
"name":"3-Oxohexadecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C27H49N2O9PRS",
"notes":{
"original_bigg_ids":[
"_3opalmACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3opalmACP"
],
"biocyc":[
"META:3-oxo-palmitoyl-ACPs"
],
"chebi":[
"CHEBI:1639"
],
"kegg.compound":[
"C05762"
],
"lipidmaps":[
"LMFA07060019"
],
"metanetx.chemical":[
"MNXM4345"
],
"sabiork":[
"8122"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11485"
]
}
},
{
"id":"akg_c",
"name":"2-Oxoglutarate",
"compartment":"c",
"charge":-2,
"formula":"C5H4O5",
"notes":{
"original_bigg_ids":[
"akg_c"
]
},
"annotation":{
"bigg.metabolite":[
"akg"
],
"biocyc":[
"META:2-KETOGLUTARATE"
],
"chebi":[
"CHEBI:40661",
"CHEBI:16810",
"CHEBI:11638",
"CHEBI:30916",
"CHEBI:19749",
"CHEBI:1253",
"CHEBI:30915",
"CHEBI:19748"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5b0a94f6-d411-44fd-bcc1-fb79b4e697f5",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/6557f3f2-0ab8-494b-a865-8ce0eae788a9"
],
"hmdb":[
"HMDB00208",
"HMDB02812",
"HMDB62781"
],
"inchi_key":[
"KPGXRSRHYNQIFN-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00026"
],
"metanetx.chemical":[
"MNXM20"
],
"reactome.compound":[
"113594",
"561075",
"5278317",
"113671",
"29406",
"389537"
],
"sabiork":[
"1922"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00024"
]
}
},
{
"id":"3opimcoa_c",
"name":"3-Oxopimeloyl-CoA",
"compartment":"c",
"formula":"C28H44N7O20P3S",
"notes":{
"original_bigg_ids":[
"_3opimcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3opimcoa"
],
"biocyc":[
"META:3-OXOPIMELOYL-COA"
],
"chebi":[
"CHEBI:15492",
"CHEBI:11876",
"CHEBI:57350",
"CHEBI:1649",
"CHEBI:20098",
"CHEBI:20178"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/04848a85-6e3c-4a83-bdd5-ae3154eb3c21"
],
"inchi_key":[
"KJXFOFKTZDJLMQ-UYRKPTJQSA-I"
],
"kegg.compound":[
"C06715"
],
"lipidmaps":[
"LMFA07050251"
],
"metanetx.chemical":[
"MNXM2941"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04104"
]
}
},
{
"id":"citm_c",
"name":"Citramalate",
"compartment":"c",
"charge":-2,
"formula":"C5H6O5",
"notes":{
"original_bigg_ids":[
"citm_c"
]
},
"annotation":{
"bigg.metabolite":[
"citm"
],
"biocyc":[
"META:CPD-14325"
],
"chebi":[
"CHEBI:23319",
"CHEBI:13997",
"CHEBI:3725",
"CHEBI:15584"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/20fadf46-7d23-4f40-a4d4-f54daa8332a4"
],
"hmdb":[
"HMDB00426"
],
"inchi_key":[
"XFTRTWQBIOMVPK-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00815"
],
"metanetx.chemical":[
"MNXM2357"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00607"
]
}
},
{
"id":"3optcoa_c",
"name":"3-Ocopentanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C26H38N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3optcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3optcoa"
],
"metanetx.chemical":[
"MNXM147794"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ala_B_c",
"name":"Beta-Alanine",
"compartment":"c",
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_B_c"
]
},
"annotation":{
"bigg.metabolite":[
"ala_B"
],
"biocyc":[
"META:B-ALANINE"
],
"chebi":[
"CHEBI:12389",
"CHEBI:63070",
"CHEBI:16958",
"CHEBI:22821",
"CHEBI:10343",
"CHEBI:57966",
"CHEBI:41050"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/0352ab69-1208-420e-b7c9-87b5b436f4df"
],
"hmdb":[
"HMDB00056"
],
"inchi_key":[
"UCMIRNVEIXFBKS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00099"
],
"kegg.drug":[
"D07561"
],
"metanetx.chemical":[
"MNXM144"
],
"reactome.compound":[
"73590",
"909777"
],
"sabiork":[
"1932"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00085"
]
}
},
{
"id":"citr__L_c",
"name":"L-Citrulline",
"compartment":"c",
"formula":"C6H13N3O3",
"notes":{
"original_bigg_ids":[
"citr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"citr__L"
],
"biocyc":[
"META:L-CITRULLINE"
],
"chebi":[
"CHEBI:41489",
"CHEBI:3730",
"CHEBI:18211",
"CHEBI:21257",
"CHEBI:16349",
"CHEBI:13092",
"CHEBI:6203",
"CHEBI:66922",
"CHEBI:14002",
"CHEBI:57743"
],
"hmdb":[
"HMDB00904"
],
"inchi_key":[
"RHGKLRLOHDJJDR-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00327"
],
"kegg.drug":[
"D07706"
],
"metanetx.chemical":[
"MNXM211"
],
"reactome.compound":[
"113567",
"29968"
],
"sabiork":[
"1329"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00274"
]
}
},
{
"id":"ala__D_c",
"name":"D-Alanine",
"compartment":"c",
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"ala__D"
],
"biocyc":[
"META:D-ALANINE"
],
"chebi":[
"CHEBI:12899",
"CHEBI:57416",
"CHEBI:41798",
"CHEBI:10840",
"CHEBI:20893",
"CHEBI:4087",
"CHEBI:32435",
"CHEBI:41848",
"CHEBI:41756",
"CHEBI:41877",
"CHEBI:15570",
"CHEBI:32436"
],
"hmdb":[
"HMDB01310"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-UWTATZPHSA-N"
],
"kegg.compound":[
"C00133"
],
"metanetx.chemical":[
"MNXM156"
],
"sabiork":[
"1940"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00117"
]
}
},
{
"id":"3otdcoa_c",
"name":"3-Oxotetradecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C35H56N7O18P3S",
"notes":{
"original_bigg_ids":[
"_3otdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3otdcoa"
],
"biocyc":[
"META:CPD-10284"
],
"chebi":[
"CHEBI:62543",
"CHEBI:1654",
"CHEBI:20183",
"CHEBI:28726"
],
"hmdb":[
"HMDB03935",
"HMDB06527"
],
"inchi_key":[
"IQNFBGHLIVBNOU-QSGBVPJFSA-J"
],
"kegg.compound":[
"C05261"
],
"lipidmaps":[
"LMFA07050256"
],
"metanetx.chemical":[
"MNXM707"
],
"reactome.compound":[
"77269"
],
"sabiork":[
"2738"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12689"
],
"slm":[
"000001022"
]
}
},
{
"id":"ckdo_c",
"name":"CMP-3-deoxy-D-manno-octulosonate",
"compartment":"c",
"charge":-2,
"formula":"C17H24N3O15P",
"notes":{
"original_bigg_ids":[
"ckdo_c"
]
},
"annotation":{
"bigg.metabolite":[
"ckdo"
],
"biocyc":[
"META:CMP-KDO"
],
"chebi":[
"CHEBI:59825",
"CHEBI:86284",
"CHEBI:18014",
"CHEBI:20874",
"CHEBI:13275",
"CHEBI:85987",
"CHEBI:41566",
"CHEBI:3277"
],
"inchi_key":[
"YWWJKULNWGRYAS-UOVSKDHASA-L"
],
"kegg.compound":[
"C04121"
],
"metanetx.chemical":[
"MNXM535"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02546"
]
}
},
{
"id":"3pg_c",
"name":"3-Phospho-D-glycerate",
"compartment":"c",
"charge":-3,
"formula":"C3H4O7P",
"notes":{
"original_bigg_ids":[
"_3pg_c"
]
},
"annotation":{
"bigg.metabolite":[
"3pg"
],
"biocyc":[
"META:G3P"
],
"chebi":[
"CHEBI:11879",
"CHEBI:11880",
"CHEBI:17794",
"CHEBI:21029",
"CHEBI:1657",
"CHEBI:58272",
"CHEBI:12987"
],
"hmdb":[
"HMDB60180"
],
"inchi_key":[
"OSJPPGNTCRNQQC-UWTATZPHSA-K"
],
"kegg.compound":[
"C00197"
],
"metanetx.chemical":[
"MNXM126"
],
"reactome.compound":[
"6799493",
"29728"
],
"sabiork":[
"21216"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00169"
]
}
},
{
"id":"ala__L_c",
"name":"L-Alanine",
"compartment":"c",
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"ala__L"
],
"biocyc":[
"META:L-ALPHA-ALANINE"
],
"chebi":[
"CHEBI:21216",
"CHEBI:32440",
"CHEBI:2539",
"CHEBI:46308",
"CHEBI:40735",
"CHEBI:16977",
"CHEBI:22277",
"CHEBI:32439",
"CHEBI:57972",
"CHEBI:6171",
"CHEBI:16449",
"CHEBI:32431",
"CHEBI:32432",
"CHEBI:66916",
"CHEBI:40734",
"CHEBI:13069",
"CHEBI:76050",
"CHEBI:13748"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/d80739c7-acbe-4c00-8ea2-e3d19a191be2",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1aad160f-1c5e-48e0-9473-6305321b31ed"
],
"hmdb":[
"HMDB00161",
"HMDB62251"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-REOHCLBHSA-N"
],
"kegg.compound":[
"C01401",
"C00041"
],
"kegg.drug":[
"D00012"
],
"metanetx.chemical":[
"MNXM32"
],
"reactome.compound":[
"389664",
"352036",
"29432",
"379697"
],
"sabiork":[
"2280",
"67"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00035",
"cpd01003"
]
}
},
{
"id":"alaala_c",
"name":"D-Alanyl-D-alanine",
"compartment":"c",
"formula":"C6H12N2O3",
"notes":{
"original_bigg_ids":[
"alaala_c"
]
},
"annotation":{
"bigg.metabolite":[
"alaala"
],
"biocyc":[
"META:D-ALA-D-ALA"
],
"chebi":[
"CHEBI:13749",
"CHEBI:4088",
"CHEBI:16576",
"CHEBI:57822",
"CHEBI:12900",
"CHEBI:20894"
],
"hmdb":[
"HMDB03459"
],
"inchi_key":[
"DEFJQIDDEAULHB-QWWZWVQMSA-N"
],
"kegg.compound":[
"C00993"
],
"metanetx.chemical":[
"MNXM669"
],
"sabiork":[
"2204"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00731"
]
}
},
{
"id":"cl_c",
"name":"Chloride",
"compartment":"c",
"charge":-1,
"formula":"Cl",
"notes":{
"original_bigg_ids":[
"cl_c"
]
},
"annotation":{
"bigg.metabolite":[
"cl"
],
"biocyc":[
"META:HCL",
"META:CL-"
],
"chebi":[
"CHEBI:24635",
"CHEBI:3731",
"CHEBI:13364",
"CHEBI:3616",
"CHEBI:13291",
"CHEBI:17883",
"CHEBI:48804",
"CHEBI:13970",
"CHEBI:5590",
"CHEBI:50315",
"CHEBI:17996"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/8797b51e-be83-48e1-82db-612c84006fdf",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b3225d45-6d2f-4312-a60d-70c87b617ad4"
],
"hmdb":[
"HMDB00492",
"HMDB02073",
"HMDB02306",
"HMDB02162"
],
"inchi_key":[
"VEXZGXHMUGYJMC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00698",
"C01327"
],
"kegg.drug":[
"D02057"
],
"metanetx.chemical":[
"MNXM43"
],
"reactome.compound":[
"29572",
"188972",
"3301973",
"352022",
"2731020",
"2731008",
"2730999"
],
"sabiork":[
"2270",
"51"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00099"
]
}
},
{
"id":"alac__S_c",
"name":"(S)-2-Acetolactate",
"compartment":"c",
"charge":-1,
"formula":"C5H7O4",
"notes":{
"original_bigg_ids":[
"alac_S_c"
]
},
"annotation":{
"bigg.metabolite":[
"alac__S"
],
"biocyc":[
"META:2-ACETO-LACTATE"
],
"chebi":[
"CHEBI:11033",
"CHEBI:374",
"CHEBI:18409",
"CHEBI:18731",
"CHEBI:58476"
],
"hmdb":[
"HMDB06855"
],
"inchi_key":[
"NMDWGEGFJUBKLB-YFKPBYRVSA-M"
],
"kegg.compound":[
"C06010"
],
"lipidmaps":[
"LMFA01050460"
],
"metanetx.chemical":[
"MNXM114079"
],
"sabiork":[
"2855"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19047"
]
}
},
{
"id":"3php_c",
"name":"3-Phosphohydroxypyruvate",
"compartment":"c",
"charge":-3,
"formula":"C3H2O7P",
"notes":{
"original_bigg_ids":[
"_3php_c"
]
},
"annotation":{
"bigg.metabolite":[
"3php"
],
"biocyc":[
"META:3-P-HYDROXYPYRUVATE"
],
"chebi":[
"CHEBI:11883",
"CHEBI:11884",
"CHEBI:18110",
"CHEBI:1661",
"CHEBI:20192",
"CHEBI:20191",
"CHEBI:30933"
],
"hmdb":[
"HMDB60175",
"HMDB01024"
],
"inchi_key":[
"LFLUCDOSQPJJBE-UHFFFAOYSA-K"
],
"kegg.compound":[
"C03232"
],
"metanetx.chemical":[
"MNXM541"
],
"reactome.compound":[
"977329"
],
"sabiork":[
"2712"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02069"
]
}
},
{
"id":"cmp_c",
"name":"CMP C9H12N3O8P",
"compartment":"c",
"charge":-2,
"formula":"C9H12N3O8P",
"notes":{
"original_bigg_ids":[
"cmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cmp"
],
"biocyc":[
"META:CMP"
],
"chebi":[
"CHEBI:60377",
"CHEBI:41312",
"CHEBI:58120",
"CHEBI:3275",
"CHEBI:41691",
"CHEBI:41319",
"CHEBI:23520",
"CHEBI:17361",
"CHEBI:13274",
"CHEBI:47362",
"CHEBI:48799",
"CHEBI:41666"
],
"hmdb":[
"HMDB00095"
],
"inchi_key":[
"IERHLVCPSMICTF-XVFCMESISA-L"
],
"kegg.compound":[
"C00055"
],
"kegg.glycan":[
"G10621"
],
"metanetx.chemical":[
"MNXM31"
],
"reactome.compound":[
"1524067",
"727810",
"109395"
],
"sabiork":[
"1284"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00046"
]
}
},
{
"id":"3psme_c",
"name":"5-O-(1-Carboxyvinyl)-3-phosphoshikimate",
"compartment":"c",
"charge":-4,
"formula":"C10H9O10P",
"notes":{
"original_bigg_ids":[
"_3psme_c"
]
},
"annotation":{
"bigg.metabolite":[
"3psme"
],
"biocyc":[
"META:3-ENOLPYRUVYL-SHIKIMATE-5P"
],
"chebi":[
"CHEBI:20533",
"CHEBI:57701",
"CHEBI:2104",
"CHEBI:12094",
"CHEBI:12097",
"CHEBI:16257"
],
"inchi_key":[
"QUTYKIXIUDQOLK-PRJMDXOYSA-J"
],
"kegg.compound":[
"C01269"
],
"metanetx.chemical":[
"MNXM1365"
],
"reactome.compound":[
"964900"
],
"sabiork":[
"5488"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00932"
]
}
},
{
"id":"alatrna_c",
"name":"L-Alanyl-tRNA(Ala)",
"compartment":"c",
"charge":1,
"formula":"C3H6NOR",
"notes":{
"original_bigg_ids":[
"alatrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"alatrna"
],
"chebi":[
"CHEBI:17732",
"CHEBI:13070",
"CHEBI:6172",
"CHEBI:13071"
],
"metanetx.chemical":[
"MNXM89815"
],
"reactome.compound":[
"379700",
"379730"
],
"sabiork":[
"3861"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16181"
]
}
},
{
"id":"co_c",
"name":"Carbon monoxide",
"compartment":"c",
"formula":"CO",
"notes":{
"original_bigg_ids":[
"co_c"
]
},
"annotation":{
"bigg.metabolite":[
"co"
],
"biocyc":[
"META:CARBON-MONOXIDE"
],
"chebi":[
"CHEBI:23013",
"CHEBI:17245",
"CHEBI:3282",
"CHEBI:41526",
"CHEBI:58072",
"CHEBI:13281"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a0a5ff93-8a43-48da-aab5-cef2c628da42"
],
"hmdb":[
"HMDB01361"
],
"inchi_key":[
"UGFAIRIUMAVXCW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00237"
],
"kegg.drug":[
"D03398",
"D09706"
],
"metanetx.chemical":[
"MNXM10881"
],
"reactome.compound":[
"189385"
],
"sabiork":[
"1987"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00204"
]
}
},
{
"id":"alpro_c",
"name":"S Aminomethyldihydrolipoylprotein CH6NS2X",
"compartment":"c",
"charge":1,
"formula":"CH6NS2X",
"notes":{
"original_bigg_ids":[
"alpro_c"
]
},
"annotation":{
"bigg.metabolite":[
"alpro"
],
"chebi":[
"CHEBI:12744",
"CHEBI:16882",
"CHEBI:8951"
],
"kegg.compound":[
"C01242"
],
"metanetx.chemical":[
"MNXM81221"
],
"sabiork":[
"5468"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11830"
]
}
},
{
"id":"4abz_c",
"name":"4-Aminobenzoate",
"compartment":"c",
"charge":-1,
"formula":"C7H6NO2",
"notes":{
"original_bigg_ids":[
"_4abz_c"
]
},
"annotation":{
"bigg.metabolite":[
"4abz"
],
"biocyc":[
"META:P-AMINO-BENZOATE"
],
"chebi":[
"CHEBI:30753",
"CHEBI:20314",
"CHEBI:44778",
"CHEBI:11959",
"CHEBI:113372",
"CHEBI:20315",
"CHEBI:17836",
"CHEBI:1783"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a5ad09dc-a75c-4ad4-8917-a62ebefdc941"
],
"hmdb":[
"HMDB01392"
],
"inchi_key":[
"ALYNCZNDIQEVRV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00568"
],
"kegg.drug":[
"D02456"
],
"metanetx.chemical":[
"MNXM421"
],
"sabiork":[
"2099"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00443"
]
}
},
{
"id":"co1dam_c",
"name":"Cob(I)yrinate a,c diamide",
"compartment":"c",
"charge":-5,
"formula":"C45H56CoN6O12",
"notes":{
"original_bigg_ids":[
"co1dam_c"
]
},
"annotation":{
"bigg.metabolite":[
"co1dam"
],
"biocyc":[
"META:CPD-694"
],
"chebi":[
"CHEBI:3785",
"CHEBI:58575",
"CHEBI:28531",
"CHEBI:85469",
"CHEBI:23329"
],
"hmdb":[
"HMDB06904",
"HMDB06965"
],
"inchi_key":[
"NKLHEMWEQJCPPF-OKJGWHJPSA-H"
],
"kegg.compound":[
"C06505"
],
"metanetx.chemical":[
"MNXM92189"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4adcho_c",
"name":"4-amino-4-deoxychorismate",
"compartment":"c",
"charge":-1,
"formula":"C10H10NO5",
"notes":{
"original_bigg_ids":[
"_4adcho_c"
]
},
"annotation":{
"bigg.metabolite":[
"4adcho"
],
"biocyc":[
"META:4-AMINO-4-DEOXYCHORISMATE"
],
"chebi":[
"CHEBI:35181",
"CHEBI:11956",
"CHEBI:18198",
"CHEBI:58406",
"CHEBI:1943",
"CHEBI:35180"
],
"inchi_key":[
"OIUJHGOLFKDBSU-HTQZYQBOSA-M"
],
"kegg.compound":[
"C11355"
],
"metanetx.chemical":[
"MNXM1458"
],
"sabiork":[
"13425"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08210"
]
}
},
{
"id":"4ahmmp_c",
"name":"4-Amino-5-hydroxymethyl-2-methylpyrimidine",
"compartment":"c",
"formula":"C6H9N3O",
"notes":{
"original_bigg_ids":[
"_4ahmmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"4ahmmp"
],
"biocyc":[
"META:HMP"
],
"chebi":[
"CHEBI:43206",
"CHEBI:11957",
"CHEBI:1781",
"CHEBI:16892",
"CHEBI:20312"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05e806c1-5e9c-4cd7-b31a-1cff94880c8a"
],
"inchi_key":[
"VUTBELPREDJDDH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01279"
],
"metanetx.chemical":[
"MNXM874"
],
"sabiork":[
"5497"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00939"
]
}
},
{
"id":"4ampm_c",
"name":"4-Amino-2-methyl-5-phosphomethylpyrimidine",
"compartment":"c",
"charge":-2,
"formula":"C6H8N3O4P",
"notes":{
"original_bigg_ids":[
"_4ampm_c"
]
},
"annotation":{
"bigg.metabolite":[
"4ampm"
],
"chebi":[
"CHEBI:44219"
],
"inchi_key":[
"SSWDVESQMBHOQT-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM31161"
],
"sabiork":[
"7398"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02775"
]
}
},
{
"id":"4c2me_c",
"name":"4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol",
"compartment":"c",
"charge":-2,
"formula":"C14H23N3O14P2",
"notes":{
"original_bigg_ids":[
"_4c2me_c"
]
},
"annotation":{
"bigg.metabolite":[
"4c2me"
],
"biocyc":[
"META:4-CYTIDINE-5-DIPHOSPHO-2-C"
],
"chebi":[
"CHEBI:16578",
"CHEBI:1770",
"CHEBI:57823",
"CHEBI:11938"
],
"inchi_key":[
"YFAUKWZNPVBCFF-XHIBXCGHSA-L"
],
"kegg.compound":[
"C11435"
],
"metanetx.chemical":[
"MNXM1642"
],
"sabiork":[
"13502"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08287"
]
}
},
{
"id":"amet_c",
"name":"S-Adenosyl-L-methionine",
"compartment":"c",
"charge":1,
"formula":"C15H23N6O5S",
"notes":{
"original_bigg_ids":[
"amet_c"
]
},
"annotation":{
"bigg.metabolite":[
"amet"
],
"biocyc":[
"META:S-ADENOSYLMETHIONINE"
],
"chebi":[
"CHEBI:33442",
"CHEBI:12757",
"CHEBI:10833",
"CHEBI:59789",
"CHEBI:67040",
"CHEBI:8946",
"CHEBI:12742",
"CHEBI:12760",
"CHEBI:10786",
"CHEBI:22036",
"CHEBI:527887",
"CHEBI:15414",
"CHEBI:45607"
],
"hmdb":[
"HMDB01185",
"HMDB62709"
],
"inchi_key":[
"MEFKEPWMEQBLKI-AIRLBKTGSA-O"
],
"kegg.compound":[
"C00019"
],
"metanetx.chemical":[
"MNXM16"
],
"reactome.compound":[
"2162265",
"5279190",
"77087",
"71284",
"353113"
],
"sabiork":[
"1272"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00017"
]
}
},
{
"id":"ametam_c",
"name":"S-Adenosylmethioninamine",
"compartment":"c",
"charge":2,
"formula":"C14H24N6O3S",
"notes":{
"original_bigg_ids":[
"ametam_c"
]
},
"annotation":{
"bigg.metabolite":[
"ametam"
],
"biocyc":[
"META:S-ADENOSYLMETHIONINAMINE"
],
"chebi":[
"CHEBI:22035",
"CHEBI:8947",
"CHEBI:12743",
"CHEBI:15625",
"CHEBI:12762",
"CHEBI:10906",
"CHEBI:57443"
],
"hmdb":[
"HMDB00988"
],
"inchi_key":[
"ZUNBITIXDCPNSD-LSRJEVITSA-O"
],
"kegg.compound":[
"C01137"
],
"metanetx.chemical":[
"MNXM321"
],
"sabiork":[
"5404"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00837"
]
}
},
{
"id":"amob_c",
"name":"S-Adenosyl-4-methylthio-2-oxobutanoate",
"compartment":"c",
"formula":"C15H19N5O6S",
"notes":{
"original_bigg_ids":[
"amob_c"
]
},
"annotation":{
"bigg.metabolite":[
"amob"
],
"biocyc":[
"META:S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE"
],
"chebi":[
"CHEBI:12758",
"CHEBI:16490",
"CHEBI:8944",
"CHEBI:22033"
],
"inchi_key":[
"UOKVQQMBGVMXPU-CJPDYEHRSA-N"
],
"kegg.compound":[
"C04425"
],
"metanetx.chemical":[
"MNXM3090"
],
"sabiork":[
"7304"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02701"
]
}
},
{
"id":"amp_c",
"name":"AMP C10H12N5O7P",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"amp_c"
]
},
"annotation":{
"bigg.metabolite":[
"amp"
],
"biocyc":[
"META:AMP-GROUP",
"META:AMP"
],
"chebi":[
"CHEBI:13736",
"CHEBI:2356",
"CHEBI:13234",
"CHEBI:22242",
"CHEBI:40786",
"CHEBI:16027",
"CHEBI:40721",
"CHEBI:40510",
"CHEBI:456215",
"CHEBI:13235",
"CHEBI:22245",
"CHEBI:40726",
"CHEBI:47222",
"CHEBI:13740",
"CHEBI:40826",
"CHEBI:12056"
],
"hmdb":[
"HMDB00045"
],
"inchi_key":[
"UDMBCSSLTHHNCD-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00020"
],
"kegg.drug":[
"D02769"
],
"metanetx.chemical":[
"MNXM14"
],
"reactome.compound":[
"389620",
"159448",
"76577",
"109275",
"164121"
],
"sabiork":[
"1273"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22272",
"cpd00018"
]
}
},
{
"id":"co2_c",
"name":"CO2 CO2",
"compartment":"c",
"formula":"CO2",
"notes":{
"original_bigg_ids":[
"co2_c"
]
},
"annotation":{
"bigg.metabolite":[
"co2"
],
"biocyc":[
"META:CARBON-DIOXIDE"
],
"chebi":[
"CHEBI:23011",
"CHEBI:3283",
"CHEBI:48829",
"CHEBI:16526",
"CHEBI:13283",
"CHEBI:13285",
"CHEBI:13284",
"CHEBI:13282"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2ec3da94-5f50-4525-81b1-5607c5c7a3d3",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379"
],
"hmdb":[
"HMDB01967"
],
"inchi_key":[
"CURLTUGMZLYLDI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00011"
],
"kegg.drug":[
"D00004"
],
"metanetx.chemical":[
"MNXM13"
],
"reactome.compound":[
"29376",
"5668565",
"189480",
"1132345",
"113528",
"1237009",
"159751",
"389536",
"159942"
],
"sabiork":[
"1266"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00011"
]
}
},
{
"id":"anhgm_c",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid",
"compartment":"c",
"charge":-1,
"formula":"C19H29N2O12",
"notes":{
"original_bigg_ids":[
"anhgm_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm"
],
"metanetx.chemical":[
"MNXM3060"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15396"
]
}
},
{
"id":"anhgm3p_c",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide",
"compartment":"c",
"charge":-2,
"formula":"C34H52N6O19",
"notes":{
"original_bigg_ids":[
"anhgm3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm3p"
],
"biocyc":[
"META:CPD0-2155"
],
"inchi_key":[
"ZWZMFRJKRXDGBE-UHFFFAOYSA-L"
],
"metanetx.chemical":[
"MNXM63489"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15397"
]
}
},
{
"id":"4crsol_c",
"name":"P-Cresol",
"compartment":"c",
"formula":"C7H8O",
"notes":{
"original_bigg_ids":[
"_4crsol_c"
]
},
"annotation":{
"bigg.metabolite":[
"4crsol"
],
"biocyc":[
"META:CPD-108"
],
"chebi":[
"CHEBI:1816",
"CHEBI:20352",
"CHEBI:44726",
"CHEBI:17847",
"CHEBI:11981"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b1f893aa-04c5-4a93-b65f-6b42cd0dc97f"
],
"hmdb":[
"HMDB13762",
"HMDB01858"
],
"inchi_key":[
"IWDCLRJOBJJRNH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01468"
],
"metanetx.chemical":[
"MNXM828"
],
"sabiork":[
"25097",
"5602"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01042"
]
}
},
{
"id":"4fe4s_c",
"name":"[4Fe-4S] iron-sulfur cluster",
"compartment":"c",
"charge":2,
"formula":"S4Fe4",
"notes":{
"original_bigg_ids":[
"_4fe4s_c"
]
},
"annotation":{
"bigg.metabolite":[
"4fe4s"
],
"biocyc":[
"META:CPD-7"
],
"chebi":[
"CHEBI:33725"
],
"inchi_key":[
"LJBDFODJNLIPKO-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM37766"
],
"sbo":"SBO:0000247"
}
},
{
"id":"co2dam_c",
"name":"Cob(II)yrinate a,c diamide",
"compartment":"c",
"charge":-4,
"formula":"C45H56CoN6O12",
"notes":{
"original_bigg_ids":[
"co2dam_c"
]
},
"annotation":{
"bigg.metabolite":[
"co2dam"
],
"biocyc":[
"META:CPD-689"
],
"chebi":[
"CHEBI:3787",
"CHEBI:23331",
"CHEBI:58537",
"CHEBI:85464",
"CHEBI:27937"
],
"inchi_key":[
"IADMSJRJSGLGJI-OKJGWHJPSA-H"
],
"kegg.compound":[
"C06504"
],
"metanetx.chemical":[
"MNXM91520"
],
"sabiork":[
"20066"
],
"sbo":"SBO:0000247"
}
},
{
"id":"anhgm4p_c",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide",
"compartment":"c",
"charge":-2,
"formula":"C37H57N7O20",
"notes":{
"original_bigg_ids":[
"anhgm4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm4p"
],
"biocyc":[
"META:CPD0-2292"
],
"inchi_key":[
"ZTOWCORYLXDAAW-JOUWMGDHSA-L"
],
"metanetx.chemical":[
"MNXM63488"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15398"
]
}
},
{
"id":"coa_c",
"name":"Coenzyme A",
"compartment":"c",
"charge":-4,
"formula":"C21H32N7O16P3S",
"notes":{
"original_bigg_ids":[
"coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"coa"
],
"biocyc":[
"META:COA-GROUP",
"META:CO-A"
],
"chebi":[
"CHEBI:41631",
"CHEBI:41597",
"CHEBI:741566",
"CHEBI:23355",
"CHEBI:13295",
"CHEBI:13298",
"CHEBI:57287",
"CHEBI:15346",
"CHEBI:3771",
"CHEBI:13294"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/19310484-6aa5-4dcf-b1da-855a8c21ecfd"
],
"hmdb":[
"HMDB01423",
"HMDB62184"
],
"inchi_key":[
"RGJOEKWQDUBAIZ-IBOSZNHHSA-J"
],
"kegg.compound":[
"C00010"
],
"metanetx.chemical":[
"MNXM12"
],
"reactome.compound":[
"193514",
"162743",
"2485002",
"1678675",
"29374",
"76194",
"8939024"
],
"sabiork":[
"1265"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22528",
"cpd00010"
]
}
},
{
"id":"anhm_c",
"name":"1,6-anhydrous-N-Acetylmuramate",
"compartment":"c",
"charge":-1,
"formula":"C11H16NO7",
"notes":{
"original_bigg_ids":[
"anhm_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhm"
],
"metanetx.chemical":[
"MNXM90585"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15399"
]
}
},
{
"id":"4hbald_c",
"name":"4-Hydroxybenzaldehyde",
"compartment":"c",
"formula":"C7H6O2",
"notes":{
"original_bigg_ids":[
"_4hbald_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hbald"
],
"biocyc":[
"META:4-HYDROXYBENZALDEHYDE"
],
"chebi":[
"CHEBI:17597",
"CHEBI:1857",
"CHEBI:12002",
"CHEBI:43009",
"CHEBI:20396"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/0c54f7ff-b26d-4b69-83d8-9bcc4283686b",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/5eb02bbc-e4ae-43c6-b80b-cda451d1f2b7"
],
"hmdb":[
"HMDB11718"
],
"inchi_key":[
"RGHHSNMVTDWUBI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00633"
],
"metanetx.chemical":[
"MNXM577"
],
"sabiork":[
"2127"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00484"
]
}
},
{
"id":"cobalt2_c",
"name":"Co2+",
"compartment":"c",
"charge":2,
"formula":"Co",
"notes":{
"original_bigg_ids":[
"cobalt2_c"
]
},
"annotation":{
"bigg.metabolite":[
"cobalt2"
],
"biocyc":[
"META:CO+2"
],
"chebi":[
"CHEBI:48828",
"CHEBI:48827",
"CHEBI:23337"
],
"hmdb":[
"HMDB00608"
],
"inchi_key":[
"XLJKHNWPARRRJB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00175"
],
"metanetx.chemical":[
"MNXM90960"
],
"sabiork":[
"23"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00149"
]
}
},
{
"id":"anhm3p_c",
"name":"1,6-anhydrous-N-Acetylmuramyl-tripeptide",
"compartment":"c",
"charge":-2,
"formula":"C26H39N5O14",
"notes":{
"original_bigg_ids":[
"anhm3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhm3p"
],
"biocyc":[
"META:CPD0-2284"
],
"inchi_key":[
"KGVLFEPQSVUIRC-FYQNUYSYSA-L"
],
"metanetx.chemical":[
"MNXM32389"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15400"
]
}
},
{
"id":"cobya_c",
"name":"Cobyrinate",
"compartment":"c",
"charge":-6,
"formula":"C45H52N4O14Co",
"notes":{
"original_bigg_ids":[
"cobya_c"
]
},
"annotation":{
"bigg.metabolite":[
"cobya"
],
"biocyc":[
"META:CPD-9049"
],
"chebi":[
"CHEBI:58894",
"CHEBI:52499"
],
"inchi_key":[
"ZRAQEEAQQLYOBK-OKJGWHJPSA-F"
],
"kegg.compound":[
"C05773"
],
"metanetx.chemical":[
"MNXM92210"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4hbutcoa_c",
"name":"4-Hydroxybutanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H38N7O18P3S",
"notes":{
"original_bigg_ids":[
"_4hbutcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hbutcoa"
],
"biocyc":[
"META:4-HYDROXY-BUTYRYL-COA"
],
"chebi":[
"CHEBI:58574",
"CHEBI:28522",
"CHEBI:20403",
"CHEBI:1861"
],
"inchi_key":[
"BAMBWCGEVIAQBF-CITAKDKDSA-J"
],
"kegg.compound":[
"C11062"
],
"metanetx.chemical":[
"MNXM2334"
],
"sabiork":[
"13140"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd07946"
]
}
},
{
"id":"codhpre6_c",
"name":"Cobalt-dihydro-precorrin 6",
"compartment":"c",
"charge":-7,
"formula":"C44H47N4O16Co",
"notes":{
"original_bigg_ids":[
"codhpre6_c"
]
},
"annotation":{
"bigg.metabolite":[
"codhpre6"
],
"biocyc":[
"META:CPD-9044"
],
"chebi":[
"CHEBI:72780",
"CHEBI:3789"
],
"inchi_key":[
"RFBIUXAOZAPWCC-RDKWKEIWSA-E"
],
"kegg.compound":[
"C11543"
],
"metanetx.chemical":[
"MNXM2653"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08373"
]
}
},
{
"id":"4hbz_c",
"name":"4-Hydroxybenzoate",
"compartment":"c",
"charge":-1,
"formula":"C7H5O3",
"notes":{
"original_bigg_ids":[
"_4hbz_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hbz"
],
"biocyc":[
"META:4-hydroxybenzoate"
],
"chebi":[
"CHEBI:20397",
"CHEBI:30763",
"CHEBI:1858",
"CHEBI:17879",
"CHEBI:44949",
"CHEBI:12003",
"CHEBI:20398"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/1811ddf5-ba98-40a5-949d-c660b8587741",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9e05c7cc-e1b3-46a4-93ce-785c0dc04bfa",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1cc87b2b-41db-4354-90b1-049369c47662"
],
"hmdb":[
"HMDB00500"
],
"inchi_key":[
"FJKROLUGYXJWQN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00156"
],
"metanetx.chemical":[
"MNXM164"
],
"reactome.compound":[
"2162213"
],
"sabiork":[
"1951"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00136"
]
}
},
{
"id":"copre2_c",
"name":"Cobalt-precorrin-2",
"compartment":"c",
"charge":-8,
"formula":"C42H38N4O16Co",
"notes":{
"original_bigg_ids":[
"copre2_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre2"
],
"biocyc":[
"META:CPD-9039"
],
"chebi":[
"CHEBI:3790",
"CHEBI:60053"
],
"inchi_key":[
"BKIWSQUNFCJSOI-HZUOBFSFSA-E"
],
"metanetx.chemical":[
"MNXM1420"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08368"
]
}
},
{
"id":"4hbzcoa_c",
"name":"4 hydroxybenoyl CoA C28H36N7O18P3S",
"compartment":"c",
"charge":-4,
"formula":"C28H36N7O18P3S",
"notes":{
"original_bigg_ids":[
"_4hbzcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hbzcoa"
],
"biocyc":[
"META:CPD-201"
],
"chebi":[
"CHEBI:15500",
"CHEBI:12004",
"CHEBI:12005",
"CHEBI:40998",
"CHEBI:57356",
"CHEBI:20399",
"CHEBI:1859"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/ab11f261-89a0-45c0-a638-6ee8b3156c03"
],
"hmdb":[
"HMDB06467",
"HMDB60140"
],
"inchi_key":[
"LTVXPVBFJBTNIJ-TYHXJLICSA-J"
],
"kegg.compound":[
"C02949"
],
"metanetx.chemical":[
"MNXM739"
],
"sabiork":[
"2603"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16876",
"cpd01892"
]
}
},
{
"id":"cro4_c",
"name":"Chromate",
"compartment":"c",
"charge":-2,
"formula":"CrO4",
"notes":{
"original_bigg_ids":[
"cro4_c"
]
},
"annotation":{
"bigg.metabolite":[
"cro4"
],
"biocyc":[
"META:CPD-4422"
],
"chebi":[
"CHEBI:35404",
"CHEBI:33143",
"CHEBI:29393",
"CHEBI:23231",
"CHEBI:33144"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fb82e131-f9c0-4b6f-9803-de9e564de14b"
],
"inchi_key":[
"ZCDOYSPFYFSLEW-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM46638"
],
"sabiork":[
"18805"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11595"
]
}
},
{
"id":"copre3_c",
"name":"Cobalt-precorrin 3",
"compartment":"c",
"charge":-8,
"formula":"C43H40N4O16Co",
"notes":{
"original_bigg_ids":[
"copre3_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre3"
],
"biocyc":[
"META:CPD-9040"
],
"chebi":[
"CHEBI:3791",
"CHEBI:60060"
],
"inchi_key":[
"FKTVLCPLZMVWHD-LPFAUARPSA-E"
],
"kegg.compound":[
"C11539"
],
"metanetx.chemical":[
"MNXM92204"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08369"
]
}
},
{
"id":"csn_c",
"name":"Cytosine",
"compartment":"c",
"formula":"C4H5N3O",
"notes":{
"original_bigg_ids":[
"csn_c"
]
},
"annotation":{
"bigg.metabolite":[
"csn"
],
"biocyc":[
"META:CYTOSINE"
],
"chebi":[
"CHEBI:23531",
"CHEBI:4072",
"CHEBI:14066",
"CHEBI:16040",
"CHEBI:41732"
],
"hmdb":[
"HMDB00630"
],
"inchi_key":[
"OPTASPLRGRRNAP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00380"
],
"metanetx.chemical":[
"MNXM761"
],
"sabiork":[
"58"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00307"
]
}
},
{
"id":"copre4_c",
"name":"Cobalt-precorrin 4",
"compartment":"c",
"charge":-7,
"formula":"C44H43N4O16Co",
"notes":{
"original_bigg_ids":[
"copre4_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre4"
],
"biocyc":[
"META:CPD-9041"
],
"chebi":[
"CHEBI:3792",
"CHEBI:60061"
],
"inchi_key":[
"VHHGJROBFDFFAE-QTESGACZSA-F"
],
"kegg.compound":[
"C11540"
],
"metanetx.chemical":[
"MNXM2361"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08370"
]
}
},
{
"id":"cspmd_c",
"name":"Carboxyspermidine",
"compartment":"c",
"charge":2,
"formula":"C8H21N3O2",
"notes":{
"original_bigg_ids":[
"cspmd_c"
]
},
"annotation":{
"bigg.metabolite":[
"cspmd"
],
"biocyc":[
"META:CPD-10012"
],
"chebi":[
"CHEBI:65072",
"CHEBI:66868"
],
"inchi_key":[
"ICLFWLHIBPQMFT-ZETCQYMHSA-P"
],
"kegg.compound":[
"C18172"
],
"metanetx.chemical":[
"MNXM92161"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19442"
]
}
},
{
"id":"copre5_c",
"name":"Cobalt-precorrin 5",
"compartment":"c",
"charge":-7,
"formula":"C45H45N4O16Co",
"notes":{
"original_bigg_ids":[
"copre5_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre5"
],
"chebi":[
"CHEBI:3793"
],
"inchi_key":[
"CMNLELJQIRWSFR-GFSZXBFJSA-M"
],
"kegg.compound":[
"C11541"
],
"metanetx.chemical":[
"MNXM47436"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08371"
]
}
},
{
"id":"ctp_c",
"name":"CTP C9H12N3O14P3",
"compartment":"c",
"charge":-4,
"formula":"C9H12N3O14P3",
"notes":{
"original_bigg_ids":[
"ctp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ctp"
],
"biocyc":[
"META:CTP"
],
"chebi":[
"CHEBI:3285",
"CHEBI:23522",
"CHEBI:41675",
"CHEBI:58231",
"CHEBI:37563",
"CHEBI:13286",
"CHEBI:17677"
],
"hmdb":[
"HMDB00082"
],
"inchi_key":[
"PCDQPRRSZKQHHS-XVFCMESISA-J"
],
"kegg.compound":[
"C00063"
],
"metanetx.chemical":[
"MNXM63"
],
"reactome.compound":[
"29470",
"110614",
"110577"
],
"sabiork":[
"1286"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00052"
]
}
},
{
"id":"4hglu_c",
"name":"4-Hydroxy-L-glutamate",
"compartment":"c",
"charge":-2,
"formula":"C5H7NO5",
"notes":{
"original_bigg_ids":[
"_4hglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hglu"
],
"chebi":[
"CHEBI:11998",
"CHEBI:32812",
"CHEBI:1851",
"CHEBI:20389",
"CHEBI:32811",
"CHEBI:20390",
"CHEBI:16338"
],
"hmdb":[
"HMDB02273",
"HMDB01344"
],
"inchi_key":[
"HBDWQSHEVMSFGY-SCQFTWEKSA-M"
],
"kegg.compound":[
"C03079"
],
"metanetx.chemical":[
"MNXM2489"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01974"
]
}
},
{
"id":"copre6_c",
"name":"Cobalt-precorrin 6",
"compartment":"c",
"charge":-7,
"formula":"C44H45N4O16Co",
"notes":{
"original_bigg_ids":[
"copre6_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre6"
],
"inchi_key":[
"DFFFCFUPOVLDTP-IICGDJHVSA-N"
],
"kegg.compound":[
"C11542"
],
"metanetx.chemical":[
"MNXM91523"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08372"
]
}
},
{
"id":"copre8_c",
"name":"Cobalt-precorrin 8",
"compartment":"c",
"charge":-6,
"formula":"C45H52N4O14Co",
"notes":{
"original_bigg_ids":[
"copre8_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre8"
],
"biocyc":[
"META:CPD-9045"
],
"chebi":[
"CHEBI:3795",
"CHEBI:70792"
],
"inchi_key":[
"DPVDDBUQBNNVPO-WTEINHRPSA-F"
],
"kegg.compound":[
"C11545"
],
"metanetx.chemical":[
"MNXM145761"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08375"
]
}
},
{
"id":"4hphac_c",
"name":"4-Hydroxyphenylacetate",
"compartment":"c",
"charge":-1,
"formula":"C8H7O3",
"notes":{
"original_bigg_ids":[
"_4hphac_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hphac"
],
"chebi":[
"CHEBI:31128"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a796d1f0-5509-4e0b-8a69-621c14841617"
],
"hmdb":[
"HMDB60390"
],
"inchi_key":[
"HBMCQTHGYMTCOF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C13636"
],
"metanetx.chemical":[
"MNXM3863"
],
"sabiork":[
"2131"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19151"
]
}
},
{
"id":"cu2_c",
"name":"Copper",
"compartment":"c",
"charge":2,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu2_c"
]
},
"annotation":{
"bigg.metabolite":[
"cu2"
],
"biocyc":[
"META:CU+2"
],
"chebi":[
"CHEBI:29036",
"CHEBI:23380",
"CHEBI:49550",
"CHEBI:20882"
],
"hmdb":[
"HMDB00657"
],
"inchi_key":[
"JPVYNHNXODAKFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00070"
],
"metanetx.chemical":[
"MNXM632"
],
"reactome.compound":[
"437295",
"936901",
"209799"
],
"sabiork":[
"19"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00058"
]
}
},
{
"id":"cpe160_c",
"name":"Cyclopropane phosphatidylethanolamine (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)",
"compartment":"c",
"formula":"C39H74N1O8P1",
"notes":{
"original_bigg_ids":[
"cpe160_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpe160"
],
"biocyc":[
"META:CPD0-2216"
],
"inchi_key":[
"DTFRUHREBAYLCS-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM48208"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15433",
"cpd26447"
]
}
},
{
"id":"cys__L_c",
"name":"L-Cysteine",
"compartment":"c",
"formula":"C3H7NO2S",
"notes":{
"original_bigg_ids":[
"cys_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"cys__L"
],
"biocyc":[
"META:CYS"
],
"chebi":[
"CHEBI:32457",
"CHEBI:15356",
"CHEBI:4050",
"CHEBI:32456",
"CHEBI:21261",
"CHEBI:41811",
"CHEBI:14061",
"CHEBI:32443",
"CHEBI:32458",
"CHEBI:32442",
"CHEBI:13095",
"CHEBI:41768",
"CHEBI:23508",
"CHEBI:32445",
"CHEBI:35235",
"CHEBI:17561",
"CHEBI:41700",
"CHEBI:6207",
"CHEBI:41781",
"CHEBI:35237",
"CHEBI:41227"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1271bedc-d0c8-4aa1-83dc-571304dd14a8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/02361658-c991-436f-ba62-fafbccfdae5e"
],
"hmdb":[
"HMDB00574"
],
"inchi_key":[
"XUJNEKJLAYXESH-REOHCLBHSA-N"
],
"kegg.compound":[
"C00736",
"C00097"
],
"kegg.drug":[
"D00026"
],
"metanetx.chemical":[
"MNXM55"
],
"reactome.compound":[
"352016",
"379721",
"111707",
"5668576"
],
"sabiork":[
"2142",
"78"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00084",
"cpd00547"
]
}
},
{
"id":"cpe180_c",
"name":"Cyclopropane phosphatidylethanolamine (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)",
"compartment":"c",
"formula":"C43H82N1O8P1",
"notes":{
"original_bigg_ids":[
"cpe180_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpe180"
],
"biocyc":[
"META:CPD0-2218"
],
"inchi_key":[
"HCFAHMIUAQMBSN-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM48209"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15434",
"cpd26449"
]
}
},
{
"id":"cyst__L_c",
"name":"L-Cystathionine",
"compartment":"c",
"formula":"C7H14N2O4S",
"notes":{
"original_bigg_ids":[
"cyst_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"cyst__L"
],
"biocyc":[
"META:L-CYSTATHIONINE"
],
"chebi":[
"CHEBI:13093",
"CHEBI:17482",
"CHEBI:6205",
"CHEBI:21259",
"CHEBI:58161"
],
"hmdb":[
"HMDB00099",
"HMDB03614"
],
"inchi_key":[
"ILRYLPWNYFXEMH-WHFBIAKZSA-N"
],
"kegg.compound":[
"C02291"
],
"metanetx.chemical":[
"MNXM319"
],
"reactome.compound":[
"1614518"
],
"sabiork":[
"6114"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19019"
]
}
},
{
"id":"cpg160_c",
"name":"Cyclopropane phosphatidylglycerol (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)",
"compartment":"c",
"charge":-1,
"formula":"C40H74O10P1",
"notes":{
"original_bigg_ids":[
"cpg160_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpg160"
],
"biocyc":[
"META:CPD0-2202"
],
"inchi_key":[
"OBXHKDVMOWISFV-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM48210"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15435",
"cpd26444"
]
}
},
{
"id":"cystrna_c",
"name":"L-Cysteinyl-tRNA(Cys)",
"compartment":"c",
"charge":1,
"formula":"C3H6NOSR",
"notes":{
"original_bigg_ids":[
"cystrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"cystrna"
],
"chebi":[
"CHEBI:74764",
"CHEBI:29152",
"CHEBI:6208",
"CHEBI:13096"
],
"kegg.compound":[
"C03125"
],
"metanetx.chemical":[
"MNXM155005"
],
"reactome.compound":[
"379713",
"379719"
],
"sabiork":[
"3855"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12255"
]
}
},
{
"id":"4mop_c",
"name":"4-Methyl-2-oxopentanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O3",
"notes":{
"original_bigg_ids":[
"_4mop_c"
]
},
"annotation":{
"bigg.metabolite":[
"4mop"
],
"biocyc":[
"META:2K-4CH3-PENTANOATE"
],
"chebi":[
"CHEBI:1891",
"CHEBI:12020",
"CHEBI:20438",
"CHEBI:48430",
"CHEBI:41619",
"CHEBI:17865"
],
"hmdb":[
"HMDB00695",
"HMDB00762"
],
"inchi_key":[
"BKAJNAXTPSGJCU-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00233"
],
"metanetx.chemical":[
"MNXM404"
],
"sabiork":[
"1985"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00200"
]
}
},
{
"id":"cpg180_c",
"name":"Cyclopropane phosphatidylglycerol (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)",
"compartment":"c",
"charge":-1,
"formula":"C44H82O10P1",
"notes":{
"original_bigg_ids":[
"cpg180_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpg180"
],
"biocyc":[
"META:CPD0-2217"
],
"inchi_key":[
"ACOSNNHXZDLJJE-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM48211"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15436",
"cpd26448"
]
}
},
{
"id":"4mpetz_c",
"name":"4-Methyl-5-(2-phosphoethyl)-thiazole",
"compartment":"c",
"charge":-2,
"formula":"C6H8NO4PS",
"notes":{
"original_bigg_ids":[
"_4mpetz_c"
]
},
"annotation":{
"bigg.metabolite":[
"4mpetz"
],
"biocyc":[
"META:THZ-P"
],
"chebi":[
"CHEBI:12024",
"CHEBI:58296",
"CHEBI:1892",
"CHEBI:12023",
"CHEBI:46182",
"CHEBI:17857",
"CHEBI:20439",
"CHEBI:30638"
],
"inchi_key":[
"OCYMERZCMYJQQO-UHFFFAOYSA-L"
],
"kegg.compound":[
"C04327"
],
"metanetx.chemical":[
"MNXM960"
],
"sabiork":[
"7237"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02654"
]
}
},
{
"id":"dad_5_c",
"name":"5'-Deoxyadenosine",
"compartment":"c",
"formula":"C10H13N5O3",
"notes":{
"original_bigg_ids":[
"dad_5_c"
]
},
"annotation":{
"bigg.metabolite":[
"dad_5"
],
"biocyc":[
"META:CH33ADO"
],
"chebi":[
"CHEBI:17319",
"CHEBI:12061",
"CHEBI:1960",
"CHEBI:40099",
"CHEBI:20493"
],
"hmdb":[
"HMDB01983"
],
"inchi_key":[
"XGYIMTFOTBMPFP-KQYNXXCUSA-N"
],
"kegg.compound":[
"C05198"
],
"metanetx.chemical":[
"MNXM316"
],
"reactome.compound":[
"1130791",
"947703"
],
"sabiork":[
"2720"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03091"
]
}
},
{
"id":"cpmp_c",
"name":"Cyclic pyranopterin monophosphate",
"compartment":"c",
"charge":-1,
"formula":"C10H13N5O8P",
"notes":{
"original_bigg_ids":[
"cpmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpmp"
],
"hmdb":[
"HMDB59639"
],
"inchi_key":[
"CZAKJJUNKNPTTO-AJFJRRQVSA-N"
],
"metanetx.chemical":[
"MNXM725870"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19505"
]
}
},
{
"id":"dadp_c",
"name":"DADP C10H12N5O9P2",
"compartment":"c",
"charge":-3,
"formula":"C10H12N5O9P2",
"notes":{
"original_bigg_ids":[
"dadp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dadp"
],
"biocyc":[
"META:DADP"
],
"chebi":[
"CHEBI:10489",
"CHEBI:16174",
"CHEBI:57667",
"CHEBI:41890",
"CHEBI:19235",
"CHEBI:14067"
],
"hmdb":[
"HMDB01508"
],
"inchi_key":[
"DAEAPNUQQAICNR-RRKCRQDMSA-K"
],
"kegg.compound":[
"C00206"
],
"metanetx.chemical":[
"MNXM374"
],
"reactome.compound":[
"500087"
],
"sabiork":[
"1314"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00177"
]
}
},
{
"id":"cpppg3_c",
"name":"Coproporphyrinogen III",
"compartment":"c",
"charge":-4,
"formula":"C36H40N4O8",
"notes":{
"original_bigg_ids":[
"cpppg3_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpppg3"
],
"biocyc":[
"META:COPROPORPHYRINOGEN_III"
],
"chebi":[
"CHEBI:15439",
"CHEBI:3880",
"CHEBI:57309",
"CHEBI:41560",
"CHEBI:23386",
"CHEBI:14020"
],
"hmdb":[
"HMDB01261"
],
"inchi_key":[
"NIUVHXTXUXOFEB-UHFFFAOYSA-J"
],
"kegg.compound":[
"C03263"
],
"metanetx.chemical":[
"MNXM410"
],
"reactome.compound":[
"189455",
"189411"
],
"sabiork":[
"8129",
"6515"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02083"
]
}
},
{
"id":"damp_c",
"name":"DAMP C10H12N5O6P",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O6P",
"notes":{
"original_bigg_ids":[
"damp_c"
]
},
"annotation":{
"bigg.metabolite":[
"damp"
],
"biocyc":[
"META:DAMP"
],
"chebi":[
"CHEBI:17713",
"CHEBI:40544",
"CHEBI:40607",
"CHEBI:41815",
"CHEBI:40614",
"CHEBI:41870",
"CHEBI:58245",
"CHEBI:41864",
"CHEBI:10490",
"CHEBI:40505",
"CHEBI:40499",
"CHEBI:19236",
"CHEBI:14068",
"CHEBI:40419"
],
"hmdb":[
"HMDB00905"
],
"inchi_key":[
"KHWCHTKSEGGWEX-RRKCRQDMSA-L"
],
"kegg.compound":[
"C00360"
],
"metanetx.chemical":[
"MNXM432"
],
"reactome.compound":[
"500088",
"109386"
],
"sabiork":[
"62"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00294"
]
}
},
{
"id":"ile__L_c",
"name":"L-Isoleucine",
"compartment":"c",
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"ile_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"ile__L"
],
"biocyc":[
"META:ILE"
],
"chebi":[
"CHEBI:43290",
"CHEBI:32604",
"CHEBI:43342",
"CHEBI:32605",
"CHEBI:17191",
"CHEBI:21344",
"CHEBI:13127",
"CHEBI:43366",
"CHEBI:6255",
"CHEBI:32613",
"CHEBI:32612",
"CHEBI:24898",
"CHEBI:58045"
],
"hmdb":[
"HMDB00172"
],
"inchi_key":[
"AGPKZVBTJJNPAG-WHFBIAKZSA-N"
],
"kegg.compound":[
"C00407"
],
"kegg.drug":[
"D00065"
],
"lipidmaps":[
"LMFA01100047"
],
"metanetx.chemical":[
"MNXM231"
],
"reactome.compound":[
"30102",
"113537"
],
"sabiork":[
"70",
"23116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00322"
]
}
},
{
"id":"dann_c",
"name":"7,8-Diaminononanoate",
"compartment":"c",
"charge":1,
"formula":"C9H21N2O2",
"notes":{
"original_bigg_ids":[
"dann_c"
]
},
"annotation":{
"bigg.metabolite":[
"dann"
],
"biocyc":[
"META:DIAMINONONANOATE"
],
"chebi":[
"CHEBI:12242",
"CHEBI:17830",
"CHEBI:20765",
"CHEBI:2247",
"CHEBI:58500"
],
"inchi_key":[
"KCEGBPIYGIWCDH-UHFFFAOYSA-O"
],
"kegg.compound":[
"C01037"
],
"lipidmaps":[
"LMFA01100062"
],
"metanetx.chemical":[
"MNXM1140"
],
"sabiork":[
"5370"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00764"
]
}
},
{
"id":"datp_c",
"name":"DATP C10H12N5O12P3",
"compartment":"c",
"charge":-4,
"formula":"C10H12N5O12P3",
"notes":{
"original_bigg_ids":[
"datp_c"
]
},
"annotation":{
"bigg.metabolite":[
"datp"
],
"biocyc":[
"META:DATP"
],
"chebi":[
"CHEBI:495505",
"CHEBI:19238",
"CHEBI:42290",
"CHEBI:10491",
"CHEBI:61404",
"CHEBI:16284",
"CHEBI:14069"
],
"hmdb":[
"HMDB01532"
],
"inchi_key":[
"SUYVUBYJARFZHO-RRKCRQDMSA-J"
],
"kegg.compound":[
"C00131"
],
"metanetx.chemical":[
"MNXM286"
],
"reactome.compound":[
"110644"
],
"sabiork":[
"1307"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00115"
]
}
},
{
"id":"db4p_c",
"name":"3,4-dihydroxy-2-butanone 4-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C4H7O6P",
"notes":{
"original_bigg_ids":[
"db4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"db4p"
],
"chebi":[
"CHEBI:50606"
],
"inchi_key":[
"OKYHYXLCTGGOLM-UHFFFAOYSA-L"
],
"kegg.compound":[
"C15556"
],
"metanetx.chemical":[
"MNXM2323"
],
"sabiork":[
"23254"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11225"
]
}
},
{
"id":"fru_c",
"name":"D-Fructose",
"compartment":"c",
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"fru_c"
]
},
"annotation":{
"bigg.metabolite":[
"fru"
],
"biocyc":[
"META:D-Fructopyranose",
"META:Fructofuranose",
"META:CPD-15382",
"META:FRU"
],
"chebi":[
"CHEBI:47424",
"CHEBI:28757",
"CHEBI:24110",
"CHEBI:20929",
"CHEBI:4119",
"CHEBI:15824",
"CHEBI:5172",
"CHEBI:24104",
"CHEBI:12923",
"CHEBI:4118",
"CHEBI:37714",
"CHEBI:37721",
"CHEBI:48095"
],
"hmdb":[
"HMDB62538"
],
"inchi_key":[
"RFSUNEUAIZKAJO-VRPWFDPXSA-N"
],
"kegg.compound":[
"C01496",
"C05003",
"C00095",
"C10906"
],
"kegg.drug":[
"D00114"
],
"metanetx.chemical":[
"MNXM175"
],
"reactome.compound":[
"189049",
"29532"
],
"sabiork":[
"25055",
"1463",
"1464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00082",
"cpd19015",
"cpd27040"
]
}
},
{
"id":"iletrna_c",
"name":"L-Isoleucyl-tRNA(Ile)",
"compartment":"c",
"charge":1,
"formula":"C6H12NOR",
"notes":{
"original_bigg_ids":[
"iletrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"iletrna"
],
"chebi":[
"CHEBI:13128",
"CHEBI:6256",
"CHEBI:29160"
],
"kegg.compound":[
"C03127"
],
"metanetx.chemical":[
"MNXM89832"
],
"reactome.compound":[
"379787",
"379769"
],
"sabiork":[
"3853"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12256"
]
}
},
{
"id":"fruur_c",
"name":"D-Fructuronate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"fruur_c"
]
},
"annotation":{
"bigg.metabolite":[
"fruur"
],
"biocyc":[
"META:FRUCTURONATE"
],
"chebi":[
"CHEBI:47950",
"CHEBI:59881",
"CHEBI:24113",
"CHEBI:16849",
"CHEBI:12927",
"CHEBI:20936",
"CHEBI:59863",
"CHEBI:20937",
"CHEBI:4126",
"CHEBI:24112"
],
"inchi_key":[
"PTCIWUZVDIQTOW-XDJBDKDSSA-M"
],
"kegg.compound":[
"C00905"
],
"metanetx.chemical":[
"MNXM1660"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00672",
"cpd27042"
]
}
},
{
"id":"dc2coa_c",
"name":"Trans-Dec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C31H48N7O17P3S",
"notes":{
"original_bigg_ids":[
"dc2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"dc2coa"
],
"biocyc":[
"META:T2-DECENOYL-COA"
],
"chebi":[
"CHEBI:10723",
"CHEBI:61406"
],
"hmdb":[
"HMDB03948"
],
"inchi_key":[
"MGNBGCRQQFMNBM-YJHHLLFWSA-J"
],
"kegg.compound":[
"C05275"
],
"lipidmaps":[
"LMFA07050023",
"LMFA07050391",
"LMFA07050175"
],
"metanetx.chemical":[
"MNXM580"
],
"reactome.compound":[
"77343"
],
"sabiork":[
"2752"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03129"
],
"slm":[
"000000907"
]
}
},
{
"id":"imacp_c",
"name":"3-(Imidazol-4-yl)-2-oxopropyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H7N2O5P",
"notes":{
"original_bigg_ids":[
"imacp_c"
]
},
"annotation":{
"bigg.metabolite":[
"imacp"
],
"biocyc":[
"META:IMIDAZOLE-ACETOL-P"
],
"chebi":[
"CHEBI:57766",
"CHEBI:1437",
"CHEBI:16426",
"CHEBI:19941",
"CHEBI:11736"
],
"hmdb":[
"HMDB12236"
],
"inchi_key":[
"YCFFMSOLUMRAMD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01267"
],
"metanetx.chemical":[
"MNXM1456"
],
"sabiork":[
"5486"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00930"
]
}
},
{
"id":"dca_c",
"name":"Decanoate (n-C10:0)",
"compartment":"c",
"charge":-1,
"formula":"C10H19O2",
"notes":{
"original_bigg_ids":[
"dca_c"
]
},
"annotation":{
"bigg.metabolite":[
"dca"
],
"metanetx.chemical":[
"MNXM162295"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fum_c",
"name":"Fumarate",
"compartment":"c",
"charge":-2,
"formula":"C4H2O4",
"notes":{
"original_bigg_ids":[
"fum_c"
]
},
"annotation":{
"bigg.metabolite":[
"fum"
],
"biocyc":[
"META:FUM"
],
"chebi":[
"CHEBI:36180",
"CHEBI:37155",
"CHEBI:42511",
"CHEBI:5190",
"CHEBI:18012",
"CHEBI:42743",
"CHEBI:22956",
"CHEBI:22957",
"CHEBI:24124",
"CHEBI:14284",
"CHEBI:37154",
"CHEBI:29806",
"CHEBI:22958",
"CHEBI:24122"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/709035ec-4868-4de8-9095-06428f6be14b"
],
"hmdb":[
"HMDB00134"
],
"inchi_key":[
"VZCYOOQTPOCHFL-OWOJBTEDSA-L"
],
"kegg.compound":[
"C00122"
],
"kegg.drug":[
"D02308"
],
"metanetx.chemical":[
"MNXM93"
],
"reactome.compound":[
"113588",
"29586"
],
"sabiork":[
"1910"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00106"
]
}
},
{
"id":"imp_c",
"name":"IMP C10H11N4O8P",
"compartment":"c",
"charge":-2,
"formula":"C10H11N4O8P",
"notes":{
"original_bigg_ids":[
"imp_c"
]
},
"annotation":{
"bigg.metabolite":[
"imp"
],
"biocyc":[
"META:IMP"
],
"chebi":[
"CHEBI:43524",
"CHEBI:13373",
"CHEBI:43528",
"CHEBI:19271",
"CHEBI:58053",
"CHEBI:12063",
"CHEBI:43611",
"CHEBI:5849",
"CHEBI:43563",
"CHEBI:12057",
"CHEBI:14457",
"CHEBI:43475",
"CHEBI:43418",
"CHEBI:17202",
"CHEBI:47501",
"CHEBI:13372"
],
"hmdb":[
"HMDB00175"
],
"inchi_key":[
"GRSZFWQUAKGDAV-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00130"
],
"metanetx.chemical":[
"MNXM125"
],
"reactome.compound":[
"2509792",
"29602"
],
"sabiork":[
"1306"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00114"
]
}
},
{
"id":"fut_c",
"name":"Futalosine",
"compartment":"c",
"charge":-1,
"formula":"C19H17N4O7",
"notes":{
"original_bigg_ids":[
"fut_c"
]
},
"annotation":{
"bigg.metabolite":[
"fut"
],
"biocyc":[
"META:CPD-10477"
],
"chebi":[
"CHEBI:58863",
"CHEBI:51310"
],
"inchi_key":[
"VEDWXCWBMDQNCV-SCFUHWHPSA-M"
],
"kegg.compound":[
"C16999"
],
"metanetx.chemical":[
"MNXM3596"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd17270"
]
}
},
{
"id":"dcaACP_c",
"name":"Decanoyl-ACP (n-C10:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C21H39N2O8PRS",
"notes":{
"original_bigg_ids":[
"dcaACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcaACP"
],
"metanetx.chemical":[
"MNXM90236"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ind3ac_c",
"name":"Indole 3 acetate C10H8NO2",
"compartment":"c",
"charge":-1,
"formula":"C10H8NO2",
"notes":{
"original_bigg_ids":[
"ind3ac_c"
]
},
"annotation":{
"bigg.metabolite":[
"ind3ac"
],
"biocyc":[
"META:INDOLE_ACETATE_AUXIN"
],
"chebi":[
"CHEBI:14452",
"CHEBI:24802",
"CHEBI:5905",
"CHEBI:30854",
"CHEBI:16411",
"CHEBI:24801",
"CHEBI:14447"
],
"hmdb":[
"HMDB00197"
],
"inchi_key":[
"SEOVTRFCIGRIMH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00954"
],
"metanetx.chemical":[
"MNXM383"
],
"sabiork":[
"5333"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00703"
]
}
},
{
"id":"dcacoa_c",
"name":"Decanoyl-CoA (n-C10:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C31H50N7O17P3S",
"notes":{
"original_bigg_ids":[
"dcacoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcacoa"
],
"hmdb":[
"HMDB06404"
],
"metanetx.chemical":[
"MNXM162283"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dcamp_c",
"name":"N6-(1,2-Dicarboxyethyl)-AMP",
"compartment":"c",
"charge":-4,
"formula":"C14H14N5O11P",
"notes":{
"original_bigg_ids":[
"dcamp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcamp"
],
"biocyc":[
"META:ADENYLOSUCC"
],
"chebi":[
"CHEBI:12657",
"CHEBI:39869",
"CHEBI:57567",
"CHEBI:21857",
"CHEBI:7405",
"CHEBI:12656",
"CHEBI:22262",
"CHEBI:15919"
],
"hmdb":[
"HMDB01332",
"HMDB11633",
"HMDB59653",
"HMDB00536"
],
"inchi_key":[
"OFBHPPMPBOJXRT-DPXQIYNJSA-J"
],
"kegg.compound":[
"C03794"
],
"metanetx.chemical":[
"MNXM565"
],
"reactome.compound":[
"35141"
],
"sabiork":[
"1886"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02375"
]
}
},
{
"id":"g1p_c",
"name":"D-Glucose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"g1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"g1p"
],
"biocyc":[
"META:D-glucose-1-phosphates",
"META:GLC-1-P"
],
"chebi":[
"CHEBI:10246",
"CHEBI:42623",
"CHEBI:12967",
"CHEBI:12320",
"CHEBI:29042",
"CHEBI:4169",
"CHEBI:58601",
"CHEBI:57629",
"CHEBI:16077",
"CHEBI:21001",
"CHEBI:12970",
"CHEBI:21004"
],
"hmdb":[
"HMDB01586",
"HMDB01306"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-GASJEMHNSA-L"
],
"kegg.compound":[
"C00103"
],
"metanetx.chemical":[
"MNXM89588"
],
"reactome.compound":[
"29548"
],
"sabiork":[
"1450",
"23742",
"1298"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00089",
"cpd28817"
]
}
},
{
"id":"g3p_c",
"name":"Glyceraldehyde 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C3H5O6P",
"notes":{
"original_bigg_ids":[
"g3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"g3p"
],
"biocyc":[
"META:GAP"
],
"chebi":[
"CHEBI:5446",
"CHEBI:14333",
"CHEBI:12984",
"CHEBI:181",
"CHEBI:17138",
"CHEBI:21026",
"CHEBI:12983",
"CHEBI:18324",
"CHEBI:58027",
"CHEBI:59776",
"CHEBI:29052"
],
"hmdb":[
"HMDB01112"
],
"inchi_key":[
"LXJXRIRHZLFYRP-VKHMYHEASA-L"
],
"kegg.compound":[
"C00661",
"C00118"
],
"metanetx.chemical":[
"MNXM74"
],
"reactome.compound":[
"29578"
],
"sabiork":[
"27",
"1687"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00102",
"cpd19005"
]
}
},
{
"id":"indaccoa_c",
"name":"S-2-(indol-3-yl)acetyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C31H39N8O17P3S",
"notes":{
"original_bigg_ids":[
"indaccoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"indaccoa"
],
"biocyc":[
"META:S-2-INDOL-3-YLACETYL-COA"
],
"chebi":[
"CHEBI:79972",
"CHEBI:12755",
"CHEBI:57271"
],
"inchi_key":[
"WXOGUAPLOCTRFO-HSJNEKGZSA-J"
],
"kegg.compound":[
"C15489"
],
"lipidmaps":[
"LMFA07050330"
],
"metanetx.chemical":[
"MNXM4015"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11175"
]
}
},
{
"id":"g6p_c",
"name":"D-Glucose 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"g6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"g6p"
],
"biocyc":[
"META:D-glucopyranose-6-phosphate"
],
"chebi":[
"CHEBI:61548",
"CHEBI:14314",
"CHEBI:4170"
],
"hmdb":[
"HMDB01549",
"HMDB01401",
"HMDB06793"
],
"inchi_key":[
"NBSCHQHZLSJFNQ-GASJEMHNSA-L"
],
"kegg.compound":[
"C00092"
],
"metanetx.chemical":[
"MNXM160"
],
"reactome.compound":[
"1629756"
],
"sabiork":[
"1404",
"1405"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00079",
"cpd26836"
]
}
},
{
"id":"gal1p_c",
"name":"Alpha-D-Galactose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"gal1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gal1p"
],
"biocyc":[
"META:GALACTOSE-1P"
],
"chebi":[
"CHEBI:42878",
"CHEBI:37480",
"CHEBI:12306",
"CHEBI:4140",
"CHEBI:58336",
"CHEBI:22374",
"CHEBI:12305",
"CHEBI:10232",
"CHEBI:20957",
"CHEBI:17973",
"CHEBI:59011"
],
"hmdb":[
"HMDB00645",
"HMDB62705",
"HMDB03359"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-FPRJBGLDSA-L"
],
"kegg.compound":[
"C00446",
"C03384"
],
"metanetx.chemical":[
"MNXM336"
],
"reactome.compound":[
"30170"
],
"sabiork":[
"1381",
"24789",
"1495"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19025",
"cpd00348"
]
}
},
{
"id":"dcdp_c",
"name":"DCDP C9H12N3O10P2",
"compartment":"c",
"charge":-3,
"formula":"C9H12N3O10P2",
"notes":{
"original_bigg_ids":[
"dcdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcdp"
],
"biocyc":[
"META:DCDP"
],
"chebi":[
"CHEBI:19241",
"CHEBI:28846",
"CHEBI:58593",
"CHEBI:10492",
"CHEBI:49966"
],
"hmdb":[
"HMDB01245"
],
"inchi_key":[
"FTDHDKPUHBLBTL-SHYZEUOFSA-K"
],
"kegg.compound":[
"C00705"
],
"metanetx.chemical":[
"MNXM411"
],
"sabiork":[
"1347"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00533"
]
}
},
{
"id":"dcmp_c",
"name":"DCMP C9H12N3O7P",
"compartment":"c",
"charge":-2,
"formula":"C9H12N3O7P",
"notes":{
"original_bigg_ids":[
"dcmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcmp"
],
"biocyc":[
"META:DCMP"
],
"chebi":[
"CHEBI:15918",
"CHEBI:10493",
"CHEBI:41838",
"CHEBI:19242",
"CHEBI:14115",
"CHEBI:41875",
"CHEBI:14071",
"CHEBI:41881",
"CHEBI:57566",
"CHEBI:14070"
],
"hmdb":[
"HMDB01202"
],
"inchi_key":[
"NCMVOABPESMRCP-SHYZEUOFSA-L"
],
"kegg.compound":[
"C00239"
],
"metanetx.chemical":[
"MNXM266"
],
"reactome.compound":[
"109378",
"500828"
],
"sabiork":[
"63"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00206"
]
}
},
{
"id":"indpyr_c",
"name":"Indolepyruvate C11H8NO3",
"compartment":"c",
"charge":-1,
"formula":"C11H8NO3",
"notes":{
"original_bigg_ids":[
"indpyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"indpyr"
],
"biocyc":[
"META:INDOLE_PYRUVATE"
],
"chebi":[
"CHEBI:11113",
"CHEBI:11738",
"CHEBI:24816",
"CHEBI:24817",
"CHEBI:17640",
"CHEBI:5917",
"CHEBI:14454",
"CHEBI:39967",
"CHEBI:29095",
"CHEBI:29750"
],
"hmdb":[
"HMDB60484"
],
"inchi_key":[
"RSTKLPZEZYGQPY-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00331"
],
"metanetx.chemical":[
"MNXM315"
],
"reactome.compound":[
"893599"
],
"sabiork":[
"5047"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00278"
]
}
},
{
"id":"dctp_c",
"name":"DCTP C9H12N3O13P3",
"compartment":"c",
"charge":-4,
"formula":"C9H12N3O13P3",
"notes":{
"original_bigg_ids":[
"dctp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dctp"
],
"biocyc":[
"META:DCTP"
],
"chebi":[
"CHEBI:19243",
"CHEBI:10494",
"CHEBI:61481",
"CHEBI:16311",
"CHEBI:14072",
"CHEBI:57724"
],
"hmdb":[
"HMDB00998"
],
"inchi_key":[
"RGWHQCVHVJXOKC-SHYZEUOFSA-J"
],
"kegg.compound":[
"C00458"
],
"metanetx.chemical":[
"MNXM360"
],
"sabiork":[
"1678"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00356"
]
}
},
{
"id":"dd2coa_c",
"name":"Trans-Dodec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C33H52N7O17P3S",
"notes":{
"original_bigg_ids":[
"dd2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"dd2coa"
],
"biocyc":[
"META:CPD-7222"
],
"chebi":[
"CHEBI:1287",
"CHEBI:57330",
"CHEBI:19790",
"CHEBI:15471",
"CHEBI:11489"
],
"hmdb":[
"HMDB11689",
"HMDB03712"
],
"inchi_key":[
"IRFYVBULXZMEDE-DEEZISNZSA-J"
],
"kegg.compound":[
"C03221"
],
"lipidmaps":[
"LMFA07050378",
"LMFA07050010",
"LMFA07050176"
],
"metanetx.chemical":[
"MNXM642"
],
"reactome.compound":[
"77255"
],
"sabiork":[
"2706"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02060"
],
"slm":[
"000000909"
]
}
},
{
"id":"galur_c",
"name":"D-Galacturonate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"galur_c"
]
},
"annotation":{
"bigg.metabolite":[
"galur"
],
"biocyc":[
"META:D-Galactopyranuronate"
],
"chebi":[
"CHEBI:20978",
"CHEBI:4153",
"CHEBI:18024",
"CHEBI:20976",
"CHEBI:75525"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-YMDCURPLSA-M"
],
"kegg.compound":[
"C00333"
],
"metanetx.chemical":[
"MNXM48464"
],
"sabiork":[
"2020"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00280"
]
}
},
{
"id":"ipdp_c",
"name":"Isopentenyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C5H9O7P2",
"notes":{
"original_bigg_ids":[
"ipdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ipdp"
],
"biocyc":[
"META:DELTA3-ISOPENTENYL-PP"
],
"chebi":[
"CHEBI:128769",
"CHEBI:24907",
"CHEBI:6037",
"CHEBI:14473",
"CHEBI:16584"
],
"hmdb":[
"HMDB01347",
"HMDB04196"
],
"inchi_key":[
"NUHSROFQTUXZQQ-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00129"
],
"lipidmaps":[
"LMPR01010008"
],
"metanetx.chemical":[
"MNXM83"
],
"reactome.compound":[
"191362",
"2162256"
],
"sabiork":[
"5009"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00113"
]
}
},
{
"id":"gam1p_c",
"name":"D-Glucosamine 1-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"gam1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gam1p"
],
"biocyc":[
"META:GLUCOSAMINE-1P"
],
"chebi":[
"CHEBI:12316",
"CHEBI:4163",
"CHEBI:42868",
"CHEBI:20994",
"CHEBI:27625",
"CHEBI:58516"
],
"inchi_key":[
"YMJBYRVFGYXULK-QZABAPFNSA-M"
],
"kegg.compound":[
"C06156"
],
"metanetx.chemical":[
"MNXM969"
],
"sabiork":[
"1854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03671"
]
}
},
{
"id":"ddca_c",
"name":"Dodecanoate (n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C12H23O2",
"notes":{
"original_bigg_ids":[
"ddca_c"
]
},
"annotation":{
"bigg.metabolite":[
"ddca"
],
"metanetx.chemical":[
"MNXM162258"
],
"sbo":"SBO:0000247"
}
},
{
"id":"iscs_c",
"name":"IscS sulfur acceptor protein",
"compartment":"c",
"formula":"HSR",
"notes":{
"original_bigg_ids":[
"iscs_c"
]
},
"annotation":{
"bigg.metabolite":[
"iscs"
],
"metanetx.chemical":[
"MNXM146401"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ddcaACP_c",
"name":"Dodecanoyl-ACP (n-C12:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C23H43N2O8PRS",
"notes":{
"original_bigg_ids":[
"ddcaACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ddcaACP"
],
"metanetx.chemical":[
"MNXM89851"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gam6p_c",
"name":"D-Glucosamine 6-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"gam6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gam6p"
],
"biocyc":[
"META:D-GLUCOSAMINE-6-P"
],
"chebi":[
"CHEBI:12962",
"CHEBI:47987",
"CHEBI:58725"
],
"inchi_key":[
"XHMJOUIAFHJHBW-IVMDWMLBSA-M"
],
"kegg.compound":[
"C00352"
],
"metanetx.chemical":[
"MNXM370"
],
"sabiork":[
"1372"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00288"
]
}
},
{
"id":"iscssh_c",
"name":"IscS with bound sulfur",
"compartment":"c",
"formula":"HS2R",
"notes":{
"original_bigg_ids":[
"iscssh_c"
]
},
"annotation":{
"bigg.metabolite":[
"iscssh"
],
"metanetx.chemical":[
"MNXM146402"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gar_c",
"name":"N1-(5-Phospho-D-ribosyl)glycinamide",
"compartment":"c",
"charge":-1,
"formula":"C7H14N2O8P",
"notes":{
"original_bigg_ids":[
"gar_c"
]
},
"annotation":{
"bigg.metabolite":[
"gar"
],
"biocyc":[
"META:5-PHOSPHO-RIBOSYL-GLYCINEAMIDE"
],
"chebi":[
"CHEBI:20499",
"CHEBI:12623",
"CHEBI:58457",
"CHEBI:18349",
"CHEBI:1983"
],
"hmdb":[
"HMDB02022"
],
"inchi_key":[
"OBQMLSFOUZUIOB-HJZCUYRDSA-M"
],
"kegg.compound":[
"C03838"
],
"metanetx.chemical":[
"MNXM463"
],
"sabiork":[
"1887"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02394"
]
}
},
{
"id":"iscu_c",
"name":"IscU scaffold protein",
"compartment":"c",
"formula":"H8O2S6R",
"notes":{
"original_bigg_ids":[
"iscu_c"
]
},
"annotation":{
"bigg.metabolite":[
"iscu"
],
"metanetx.chemical":[
"MNXM147128"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gcald_c",
"name":"Glycolaldehyde",
"compartment":"c",
"formula":"C2H4O2",
"notes":{
"original_bigg_ids":[
"gcald_c"
]
},
"annotation":{
"bigg.metabolite":[
"gcald"
],
"biocyc":[
"META:GLYCOLALDEHYDE"
],
"chebi":[
"CHEBI:17071",
"CHEBI:14347",
"CHEBI:5474",
"CHEBI:24386",
"CHEBI:131198"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e2dfc2d7-7e7a-4d56-be42-e908339482d8",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/63cc62ab-fc6a-445b-95c3-063343133b84",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ce61ea61-b391-41cd-91ac-507b44085575"
],
"hmdb":[
"HMDB02165",
"HMDB03344"
],
"inchi_key":[
"WGCNASOHLSPBMP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00266"
],
"metanetx.chemical":[
"MNXM349"
],
"sabiork":[
"2004"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00229"
]
}
},
{
"id":"ddcacoa_c",
"name":"Dodecanoyl-CoA (n-C12:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C33H54N7O17P3S",
"notes":{
"original_bigg_ids":[
"ddcacoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ddcacoa"
],
"biocyc":[
"META:LAUROYLCOA-CPD"
],
"chebi":[
"CHEBI:15521",
"CHEBI:57375",
"CHEBI:25014",
"CHEBI:6392",
"CHEBI:41874",
"CHEBI:14188",
"CHEBI:14501"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/74d61ac3-3daa-4b6c-b746-ada3812ec3c7"
],
"hmdb":[
"HMDB03571"
],
"inchi_key":[
"YMCXGHLSVALICC-GMHMEAMDSA-J"
],
"kegg.compound":[
"C01832"
],
"lipidmaps":[
"LMFA07050340",
"LMFA07050005"
],
"metanetx.chemical":[
"MNXM363"
],
"reactome.compound":[
"77261"
],
"sabiork":[
"2322"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01260"
],
"slm":[
"000000649"
]
}
},
{
"id":"ddcap_c",
"name":"Dodecanoly-phosphate (n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C12H24O5P1",
"notes":{
"original_bigg_ids":[
"ddcap_c"
]
},
"annotation":{
"bigg.metabolite":[
"ddcap"
],
"metanetx.chemical":[
"MNXM147470"
],
"sbo":"SBO:0000247"
}
},
{
"id":"iscu_2fe2s_c",
"name":"IscU with bound [2Fe-2S] cluster",
"compartment":"c",
"charge":-2,
"formula":"H4O2S8Fe2R",
"notes":{
"original_bigg_ids":[
"iscu_2fe2s_c"
]
},
"annotation":{
"bigg.metabolite":[
"iscu_2fe2s"
],
"metanetx.chemical":[
"MNXM147129"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dgdp_c",
"name":"DGDP C10H12N5O10P2",
"compartment":"c",
"charge":-3,
"formula":"C10H12N5O10P2",
"notes":{
"original_bigg_ids":[
"dgdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dgdp"
],
"biocyc":[
"META:DGDP"
],
"chebi":[
"CHEBI:58595",
"CHEBI:19245",
"CHEBI:41949",
"CHEBI:28862",
"CHEBI:10495"
],
"hmdb":[
"HMDB00960"
],
"inchi_key":[
"CIKGWCTVFSRMJU-KVQBGUIXSA-K"
],
"kegg.compound":[
"C00361"
],
"metanetx.chemical":[
"MNXM436"
],
"reactome.compound":[
"500077"
],
"sabiork":[
"1677"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00295"
]
}
},
{
"id":"gdp_c",
"name":"GDP C10H12N5O11P2",
"compartment":"c",
"charge":-3,
"formula":"C10H12N5O11P2",
"notes":{
"original_bigg_ids":[
"gdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdp"
],
"biocyc":[
"META:GDP"
],
"chebi":[
"CHEBI:5212",
"CHEBI:17552",
"CHEBI:58189",
"CHEBI:13327",
"CHEBI:42738",
"CHEBI:14379",
"CHEBI:24448",
"CHEBI:65180"
],
"hmdb":[
"HMDB01201"
],
"inchi_key":[
"QGWNDRXFNXRZMB-UUOKFMHZSA-K"
],
"kegg.compound":[
"C00035"
],
"kegg.glycan":[
"G10620"
],
"metanetx.chemical":[
"MNXM30"
],
"reactome.compound":[
"113525",
"29420",
"205689",
"111349"
],
"sabiork":[
"1280"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00031"
]
}
},
{
"id":"iscu_2fe2s2_c",
"name":"IscU with two bound [2Fe-2S] clusters",
"compartment":"c",
"charge":-4,
"formula":"O2S10Fe4R",
"notes":{
"original_bigg_ids":[
"iscu_2fe2s2_c"
]
},
"annotation":{
"bigg.metabolite":[
"iscu_2fe2s2"
],
"metanetx.chemical":[
"MNXM148287"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gdpddman_c",
"name":"GDP-4-dehydro-6-deoxy-D-mannose",
"compartment":"c",
"charge":-2,
"formula":"C16H21N5O15P2",
"notes":{
"original_bigg_ids":[
"gdpddman_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdpddman"
],
"biocyc":[
"META:GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE"
],
"chebi":[
"CHEBI:13329",
"CHEBI:57964",
"CHEBI:5214",
"CHEBI:21153",
"CHEBI:16955"
],
"inchi_key":[
"PNHLMHWWFOPQLK-BKUUWRAGSA-L"
],
"kegg.compound":[
"C01222"
],
"metanetx.chemical":[
"MNXM516"
],
"reactome.compound":[
"6787618"
],
"sabiork":[
"1566"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00900"
]
}
},
{
"id":"dgmp_c",
"name":"DGMP C10H12N5O7P",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"dgmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dgmp"
],
"biocyc":[
"META:DGMP"
],
"chebi":[
"CHEBI:57673",
"CHEBI:16192",
"CHEBI:42726",
"CHEBI:41902",
"CHEBI:42733",
"CHEBI:47449",
"CHEBI:42676",
"CHEBI:19246",
"CHEBI:14074",
"CHEBI:10496",
"CHEBI:41939",
"CHEBI:41944",
"CHEBI:45049"
],
"inchi_key":[
"LTFMZDNNPPEQNG-KVQBGUIXSA-L"
],
"kegg.compound":[
"C00362"
],
"metanetx.chemical":[
"MNXM546"
],
"reactome.compound":[
"500071"
],
"sabiork":[
"64"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00296"
]
}
},
{
"id":"iscu_4fe4s_c",
"name":"IscU with bound [4Fe-4S] cluster",
"compartment":"c",
"charge":-2,
"formula":"H4O2S10Fe4R",
"notes":{
"original_bigg_ids":[
"iscu_4fe4s_c"
]
},
"annotation":{
"bigg.metabolite":[
"iscu_4fe4s"
],
"metanetx.chemical":[
"MNXM148286"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dgsn_c",
"name":"Deoxyguanosine",
"compartment":"c",
"formula":"C10H13N5O4",
"notes":{
"original_bigg_ids":[
"dgsn_c"
]
},
"annotation":{
"bigg.metabolite":[
"dgsn"
],
"biocyc":[
"META:DEOXYGUANOSINE"
],
"chebi":[
"CHEBI:14116",
"CHEBI:23624",
"CHEBI:42667",
"CHEBI:42874",
"CHEBI:17172",
"CHEBI:42867",
"CHEBI:4412",
"CHEBI:42987",
"CHEBI:19244"
],
"hmdb":[
"HMDB00085"
],
"inchi_key":[
"YKBGVTZYEHREMT-KVQBGUIXSA-N"
],
"kegg.compound":[
"C00330"
],
"metanetx.chemical":[
"MNXM647"
],
"sabiork":[
"1869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00277"
]
}
},
{
"id":"gdpfuc_c",
"name":"GDP-L-fucose",
"compartment":"c",
"charge":-2,
"formula":"C16H23N5O15P2",
"notes":{
"original_bigg_ids":[
"gdpfuc_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdpfuc"
],
"biocyc":[
"META:CPD-13118",
"META:GUANOSINE_DIPHOSPHATE_FUCOSE"
],
"chebi":[
"CHEBI:13335",
"CHEBI:57984",
"CHEBI:13332",
"CHEBI:17009",
"CHEBI:57273",
"CHEBI:5221",
"CHEBI:21162"
],
"hmdb":[
"HMDB01095"
],
"inchi_key":[
"LQEBEXMHBLQMDB-JGQUBWHWSA-L"
],
"kegg.compound":[
"C00325"
],
"kegg.glycan":[
"G10615"
],
"metanetx.chemical":[
"MNXM193"
],
"reactome.compound":[
"742368",
"205683"
],
"sabiork":[
"1562"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23744",
"cpd27127",
"cpd00272"
]
}
},
{
"id":"dgtp_c",
"name":"DGTP C10H12N5O13P3",
"compartment":"c",
"charge":-4,
"formula":"C10H12N5O13P3",
"notes":{
"original_bigg_ids":[
"dgtp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dgtp"
],
"biocyc":[
"META:DGTP"
],
"chebi":[
"CHEBI:16497",
"CHEBI:57794",
"CHEBI:61429",
"CHEBI:10497",
"CHEBI:19247",
"CHEBI:14076"
],
"hmdb":[
"HMDB01440"
],
"inchi_key":[
"HAAZLUGHYHWQIW-KVQBGUIXSA-J"
],
"kegg.compound":[
"C00286"
],
"metanetx.chemical":[
"MNXM344"
],
"sabiork":[
"1675"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00241"
]
}
},
{
"id":"isetac_c",
"name":"Isethionic acid",
"compartment":"c",
"charge":-1,
"formula":"C2H5O4S",
"notes":{
"original_bigg_ids":[
"isetac_c"
]
},
"annotation":{
"bigg.metabolite":[
"isetac"
],
"biocyc":[
"META:CPD-3745"
],
"chebi":[
"CHEBI:1157",
"CHEBI:61904"
],
"hmdb":[
"HMDB03903"
],
"inchi_key":[
"SUMDYPCJJOFFON-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05123"
],
"metanetx.chemical":[
"MNXM1630"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03048"
]
}
},
{
"id":"dhap_c",
"name":"Dihydroxyacetone phosphate",
"compartment":"c",
"charge":-2,
"formula":"C3H5O6P",
"notes":{
"original_bigg_ids":[
"dhap_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhap"
],
"biocyc":[
"META:DIHYDROXY-ACETONE-PHOSPHATE"
],
"chebi":[
"CHEBI:14341",
"CHEBI:5454",
"CHEBI:16108",
"CHEBI:14342",
"CHEBI:24355",
"CHEBI:39571",
"CHEBI:57642"
],
"hmdb":[
"HMDB11735",
"HMDB01473"
],
"inchi_key":[
"GNGACRATGGDKBX-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00111"
],
"metanetx.chemical":[
"MNXM77"
],
"reactome.compound":[
"390404",
"75970",
"188451"
],
"sabiork":[
"28"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00095"
]
}
},
{
"id":"dhf_c",
"name":"7,8-Dihydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C19H19N7O6",
"notes":{
"original_bigg_ids":[
"dhf_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhf"
],
"biocyc":[
"META:DIHYDROFOLATE"
],
"chebi":[
"CHEBI:42000",
"CHEBI:15633",
"CHEBI:12245",
"CHEBI:20768",
"CHEBI:57451",
"CHEBI:14150",
"CHEBI:4564"
],
"hmdb":[
"HMDB01056"
],
"inchi_key":[
"OZRNSSUDZOLUSN-LBPRGKRZSA-L"
],
"kegg.compound":[
"C00415"
],
"metanetx.chemical":[
"MNXM281"
],
"reactome.compound":[
"73604"
],
"sabiork":[
"1336"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00330"
]
}
},
{
"id":"gdpmann_c",
"name":"GDP-D-mannose",
"compartment":"c",
"charge":-2,
"formula":"C16H23N5O16P2",
"notes":{
"original_bigg_ids":[
"gdpmann_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdpmann"
],
"biocyc":[
"META:GDP-MANNOSE"
],
"chebi":[
"CHEBI:13328",
"CHEBI:5225",
"CHEBI:42729",
"CHEBI:84881",
"CHEBI:21159",
"CHEBI:57527",
"CHEBI:13333",
"CHEBI:84880",
"CHEBI:15820",
"CHEBI:13340"
],
"hmdb":[
"HMDB01163"
],
"inchi_key":[
"MVMSCBBUIHUTGJ-GDJBGNAASA-L"
],
"kegg.compound":[
"C00096"
],
"kegg.glycan":[
"G10614"
],
"metanetx.chemical":[
"MNXM82"
],
"sabiork":[
"1559",
"3925"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00083"
]
}
},
{
"id":"gdpofuc_c",
"name":"GDP-4-oxo-L-fucose",
"compartment":"c",
"charge":-2,
"formula":"C16H21N5O15P2",
"notes":{
"original_bigg_ids":[
"gdpofuc_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdpofuc"
],
"biocyc":[
"META:CPD0-2128"
],
"chebi":[
"CHEBI:21155",
"CHEBI:5216",
"CHEBI:28530"
],
"inchi_key":[
"PNHLMHWWFOPQLK-WAMCPPDZSA-L"
],
"metanetx.chemical":[
"MNXM54801"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15472"
]
}
},
{
"id":"gdptp_c",
"name":"Guanosine 3'-diphosphate 5'-triphosphate",
"compartment":"c",
"charge":-7,
"formula":"C10H11N5O20P5",
"notes":{
"original_bigg_ids":[
"gdptp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdptp"
],
"biocyc":[
"META:GDP-TP"
],
"chebi":[
"CHEBI:14382",
"CHEBI:5566",
"CHEBI:24446",
"CHEBI:14378",
"CHEBI:71477",
"CHEBI:60028",
"CHEBI:16690"
],
"hmdb":[
"HMDB60480"
],
"inchi_key":[
"KCPMACXZAITQAX-UUOKFMHZSA-H"
],
"kegg.compound":[
"C04494"
],
"metanetx.chemical":[
"MNXM1561"
],
"sabiork":[
"1817"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02740"
]
}
},
{
"id":"itp_c",
"name":"ITP C10H11N4O14P3",
"compartment":"c",
"charge":-4,
"formula":"C10H11N4O14P3",
"notes":{
"original_bigg_ids":[
"itp_c"
]
},
"annotation":{
"bigg.metabolite":[
"itp"
],
"biocyc":[
"META:ITP"
],
"chebi":[
"CHEBI:43508",
"CHEBI:16039",
"CHEBI:61402",
"CHEBI:19272",
"CHEBI:13374",
"CHEBI:57614",
"CHEBI:5851"
],
"hmdb":[
"HMDB00189"
],
"inchi_key":[
"HAEJPQIATWHALX-KQYNXXCUSA-J"
],
"kegg.compound":[
"C00081"
],
"metanetx.chemical":[
"MNXM423"
],
"reactome.compound":[
"2509836"
],
"sabiork":[
"1291"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00068"
]
}
},
{
"id":"ghb_c",
"name":"Gamma-hydroxybutyrate",
"compartment":"c",
"charge":-1,
"formula":"C4H7O3",
"notes":{
"original_bigg_ids":[
"ghb_c"
]
},
"annotation":{
"bigg.metabolite":[
"ghb"
],
"biocyc":[
"META:4-HYDROXY-BUTYRATE"
],
"chebi":[
"CHEBI:12006",
"CHEBI:1860",
"CHEBI:30830",
"CHEBI:20402",
"CHEBI:386065",
"CHEBI:16724",
"CHEBI:20401"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a41e6b76-b462-49d4-ae42-391ef00bf98c"
],
"hmdb":[
"HMDB15507",
"HMDB00710"
],
"inchi_key":[
"SJZRECIVHVDYJC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00989",
"C01991"
],
"lipidmaps":[
"LMFA01050006"
],
"metanetx.chemical":[
"MNXM514"
],
"reactome.compound":[
"880041"
],
"sabiork":[
"2203"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11988",
"cpd00728"
]
}
},
{
"id":"dhgly_c",
"name":"Dehydroglycine",
"compartment":"c",
"charge":-1,
"formula":"C2H2NO2",
"notes":{
"original_bigg_ids":[
"dhgly_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhgly"
],
"biocyc":[
"META:CPD-12279"
],
"chebi":[
"CHEBI:77846",
"CHEBI:53647",
"CHEBI:53664"
],
"inchi_key":[
"TVMUHOAONWHJBV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C15809"
],
"metanetx.chemical":[
"MNXM1984"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14545"
]
}
},
{
"id":"dhlplarg_c",
"name":"Dihydrolipoyl carrier protein LarG",
"compartment":"c",
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"dhlplarg_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhlplarg"
],
"metanetx.chemical":[
"MNXM147469"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ivcoa_c",
"name":"Isovaleryl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C26H40N7O17P3S",
"notes":{
"original_bigg_ids":[
"ivcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ivcoa"
],
"biocyc":[
"META:ISOVALERYL-COA"
],
"chebi":[
"CHEBI:14481",
"CHEBI:57345",
"CHEBI:1598",
"CHEBI:20126",
"CHEBI:11856",
"CHEBI:15487"
],
"hmdb":[
"HMDB01113"
],
"inchi_key":[
"UYVZIWWBJMYRCD-ZMHDXICWSA-J"
],
"kegg.compound":[
"C02939"
],
"lipidmaps":[
"LMFA07050336"
],
"metanetx.chemical":[
"MNXM471"
],
"reactome.compound":[
"70715"
],
"sabiork":[
"2599"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01882"
]
}
},
{
"id":"ghhlipa_c",
"name":"Glucosyl-heptosyl-heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-6,
"formula":"C130H230N2O56P2",
"notes":{
"original_bigg_ids":[
"ghhlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ghhlipa"
],
"metanetx.chemical":[
"MNXM148266"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dhlpro_c",
"name":"Dihydrolipolprotein H2S2X",
"compartment":"c",
"formula":"H2S2X",
"notes":{
"original_bigg_ids":[
"dhlpro_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhlpro"
],
"chebi":[
"CHEBI:4570",
"CHEBI:14155",
"CHEBI:16194"
],
"kegg.compound":[
"C02972"
],
"metanetx.chemical":[
"MNXM1663"
],
"sabiork":[
"6403"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12225"
]
}
},
{
"id":"k_c",
"name":"Potassium",
"compartment":"c",
"charge":1,
"formula":"K",
"notes":{
"original_bigg_ids":[
"k_c"
]
},
"annotation":{
"bigg.metabolite":[
"k"
],
"biocyc":[
"META:K+"
],
"chebi":[
"CHEBI:26219",
"CHEBI:29103",
"CHEBI:8345",
"CHEBI:49685"
],
"hmdb":[
"HMDB00586"
],
"inchi_key":[
"NPYPAHLBTDXSSS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00238"
],
"kegg.drug":[
"D08403"
],
"metanetx.chemical":[
"MNXM95"
],
"reactome.compound":[
"74126",
"5626313",
"29804"
],
"sabiork":[
"21"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00205"
]
}
},
{
"id":"ghhlipan_c",
"name":"Glucosyl-heptosyl-heptosyl-kdo2-lipidA (glucosediamine)",
"compartment":"c",
"charge":-6,
"formula":"C130H232N4O54P2",
"notes":{
"original_bigg_ids":[
"ghhlipan_c"
]
},
"annotation":{
"bigg.metabolite":[
"ghhlipan"
],
"metanetx.chemical":[
"MNXM148267"
],
"sbo":"SBO:0000247"
}
},
{
"id":"kdo_c",
"name":"3-Deoxy-D-manno-2-octulosonate",
"compartment":"c",
"charge":-1,
"formula":"C8H13O8",
"notes":{
"original_bigg_ids":[
"kdo_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo"
],
"biocyc":[
"META:KDO"
],
"chebi":[
"CHEBI:43577",
"CHEBI:85986"
],
"inchi_key":[
"NNLZBVFSCVTSLA-HXUQBWEZSA-M"
],
"metanetx.chemical":[
"MNXM36403"
],
"sbo":"SBO:0000247"
}
},
{
"id":"kdo2lipid4_c",
"name":"KDO(2)-lipid IV(A)",
"compartment":"c",
"charge":-6,
"formula":"C84H148N2O37P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4"
],
"biocyc":[
"META:KDO2-LIPID-IVA"
],
"chebi":[
"CHEBI:28526",
"CHEBI:60365",
"CHEBI:4477",
"CHEBI:23657"
],
"inchi_key":[
"XAOLJGCZESYRFT-VHSKNIDJSA-H"
],
"kegg.compound":[
"C06025"
],
"kegg.glycan":[
"G11160"
],
"lipidmaps":[
"LMSL02000003"
],
"metanetx.chemical":[
"MNXM824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03586"
]
}
},
{
"id":"glc__D_c",
"name":"D-Glucose",
"compartment":"c",
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"glc_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"glc__D"
],
"biocyc":[
"META:Glucopyranose"
],
"chebi":[
"CHEBI:12965",
"CHEBI:20999",
"CHEBI:4167",
"CHEBI:17634"
],
"hmdb":[
"HMDB00122",
"HMDB06564"
],
"inchi_key":[
"WQZGKKKJIJFFOK-GASJEMHNSA-N"
],
"kegg.compound":[
"C00031"
],
"kegg.drug":[
"D00009"
],
"metanetx.chemical":[
"MNXM41"
],
"sabiork":[
"1406",
"1407"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26821",
"cpd00027"
]
}
},
{
"id":"dhna_c",
"name":"1,4-Dihydroxy-2-naphthoate",
"compartment":"c",
"charge":-1,
"formula":"C11H7O4",
"notes":{
"original_bigg_ids":[
"dhna_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhna"
],
"biocyc":[
"META:DIHYDROXYNAPHTHOATE"
],
"chebi":[
"CHEBI:11173",
"CHEBI:539",
"CHEBI:18933",
"CHEBI:18094"
],
"inchi_key":[
"VOJUXHHACRXLTD-UHFFFAOYSA-M"
],
"kegg.compound":[
"C03657"
],
"metanetx.chemical":[
"MNXM552"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02295"
]
}
},
{
"id":"kdo2lipid4L_c",
"name":"KDO(2)-lipid IV(A) with laurate",
"compartment":"c",
"charge":-6,
"formula":"C96H170N2O38P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4L_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4L"
],
"chebi":[
"CHEBI:6393",
"CHEBI:25015",
"CHEBI:27422",
"CHEBI:61524",
"CHEBI:61554"
],
"inchi_key":[
"JVUUYJGQIVCMIU-ZODGSCPMSA-H"
],
"kegg.compound":[
"C06251"
],
"lipidmaps":[
"LMSL02000002"
],
"metanetx.chemical":[
"MNXM1870"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29678",
"cpd03736"
]
}
},
{
"id":"dhnpt_c",
"name":"Dihydroneopterin",
"compartment":"c",
"formula":"C9H13N5O4",
"notes":{
"original_bigg_ids":[
"dhnpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhnpt"
],
"biocyc":[
"META:DIHYDRO-NEO-PTERIN"
],
"chebi":[
"CHEBI:30567",
"CHEBI:11510",
"CHEBI:17001",
"CHEBI:44427",
"CHEBI:1001",
"CHEBI:19454"
],
"hmdb":[
"HMDB02275"
],
"inchi_key":[
"YQIFAMYNGGOTFB-XINAWCOVSA-N"
],
"kegg.compound":[
"C04874"
],
"metanetx.chemical":[
"MNXM162359"
],
"sabiork":[
"7637"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02961"
]
}
},
{
"id":"glcur_c",
"name":"D-Glucuronate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"glcur_c"
]
},
"annotation":{
"bigg.metabolite":[
"glcur"
],
"biocyc":[
"META:D-Glucopyranuronate"
],
"chebi":[
"CHEBI:12975",
"CHEBI:24297",
"CHEBI:21013",
"CHEBI:47952",
"CHEBI:24298",
"CHEBI:4178",
"CHEBI:58720",
"CHEBI:15748"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-AQKNRBDQSA-M"
],
"kegg.compound":[
"C00191"
],
"metanetx.chemical":[
"MNXM241"
],
"sabiork":[
"26257"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00164"
]
}
},
{
"id":"kdo2lipid4Ln_c",
"name":"KDO(2)-lipid IV(A) with laurate (glucosediaminyl)",
"compartment":"c",
"charge":-6,
"formula":"C96H172N4O36P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4Ln_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4Ln"
],
"metanetx.chemical":[
"MNXM148294"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gln__L_c",
"name":"L-Glutamine",
"compartment":"c",
"formula":"C5H10N2O3",
"notes":{
"original_bigg_ids":[
"gln_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"gln__L"
],
"biocyc":[
"META:GLN"
],
"chebi":[
"CHEBI:42943",
"CHEBI:42899",
"CHEBI:32679",
"CHEBI:32678",
"CHEBI:58359",
"CHEBI:28300",
"CHEBI:42812",
"CHEBI:13110",
"CHEBI:18050",
"CHEBI:32666",
"CHEBI:6227",
"CHEBI:32665",
"CHEBI:21308",
"CHEBI:42814",
"CHEBI:5432",
"CHEBI:24316"
],
"hmdb":[
"HMDB00641"
],
"inchi_key":[
"ZDXPYRJPNDTMRX-VKHMYHEASA-N"
],
"kegg.compound":[
"C00064",
"C00303"
],
"kegg.drug":[
"D00015"
],
"metanetx.chemical":[
"MNXM37"
],
"reactome.compound":[
"113522",
"212615",
"29472"
],
"sabiork":[
"2011",
"74"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00253",
"cpd00053"
]
}
},
{
"id":"dhor__S_c",
"name":"(S)-Dihydroorotate",
"compartment":"c",
"charge":-1,
"formula":"C5H5N2O4",
"notes":{
"original_bigg_ids":[
"dhor_S_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhor__S"
],
"biocyc":[
"META:DI-H-OROTATE"
],
"chebi":[
"CHEBI:417",
"CHEBI:11063",
"CHEBI:17025",
"CHEBI:30864",
"CHEBI:42132",
"CHEBI:18777",
"CHEBI:18778"
],
"hmdb":[
"HMDB03349"
],
"inchi_key":[
"UFIVEPVSAGBUSI-REOHCLBHSA-M"
],
"kegg.compound":[
"C00337"
],
"metanetx.chemical":[
"MNXM252"
],
"reactome.compound":[
"76630"
],
"sabiork":[
"2022"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00282"
]
}
},
{
"id":"kdo2lipid4n_c",
"name":"KDO(2)-lipid IV(A) (glucosediaminyl)",
"compartment":"c",
"charge":-6,
"formula":"C84H150N4O35P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4n_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4n"
],
"metanetx.chemical":[
"MNXM148293"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dhpmp_c",
"name":"Dihydroneopterin monophosphate",
"compartment":"c",
"charge":-2,
"formula":"C9H12N5O7P",
"notes":{
"original_bigg_ids":[
"dhpmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhpmp"
],
"biocyc":[
"META:DIHYDRONEOPTERIN-P"
],
"chebi":[
"CHEBI:48954",
"CHEBI:58762",
"CHEBI:4577",
"CHEBI:23756"
],
"hmdb":[
"HMDB06824"
],
"inchi_key":[
"PLSQMGZYOGSOCE-XINAWCOVSA-L"
],
"kegg.compound":[
"C05925"
],
"metanetx.chemical":[
"MNXM1645"
],
"sabiork":[
"8272"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03521",
"cpd29676"
]
}
},
{
"id":"glntrna_c",
"name":"L-Glutaminyl-tRNA(Gln)",
"compartment":"c",
"charge":1,
"formula":"C5H9N2O2R",
"notes":{
"original_bigg_ids":[
"glntrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"glntrna"
],
"chebi":[
"CHEBI:13112",
"CHEBI:5433",
"CHEBI:13344",
"CHEBI:29166"
],
"kegg.compound":[
"C02282"
],
"metanetx.chemical":[
"MNXM89810"
],
"reactome.compound":[
"379753",
"379772"
],
"sabiork":[
"3857"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12060"
]
}
},
{
"id":"kdo8p_c",
"name":"3-Deoxy-D-manno-octulosonate 8-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C8H12O11P",
"notes":{
"original_bigg_ids":[
"kdo8p_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo8p"
],
"biocyc":[
"META:KDO-8P"
],
"chebi":[
"CHEBI:18069",
"CHEBI:42115",
"CHEBI:1494",
"CHEBI:58368",
"CHEBI:11788",
"CHEBI:20006",
"CHEBI:85985",
"CHEBI:11552"
],
"inchi_key":[
"IZZNRKJLBIYBJN-HXUQBWEZSA-K"
],
"kegg.compound":[
"C04478"
],
"metanetx.chemical":[
"MNXM722774"
],
"sabiork":[
"7341"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02730"
]
}
},
{
"id":"dhpt_c",
"name":"Dihydropteroate",
"compartment":"c",
"charge":-1,
"formula":"C14H13N6O3",
"notes":{
"original_bigg_ids":[
"dhpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhpt"
],
"biocyc":[
"META:7-8-DIHYDROPTEROATE"
],
"chebi":[
"CHEBI:23762",
"CHEBI:17839",
"CHEBI:14160",
"CHEBI:4581"
],
"hmdb":[
"HMDB01412"
],
"inchi_key":[
"WBFYVDCHGVNRBH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00921"
],
"metanetx.chemical":[
"MNXM722728"
],
"sabiork":[
"5318"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28675",
"cpd00683",
"cpd28673"
]
}
},
{
"id":"kdolipid4_c",
"name":"KDO-lipid IV(A)",
"compartment":"c",
"charge":-5,
"formula":"C76H137N2O30P2",
"notes":{
"original_bigg_ids":[
"kdolipid4_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdolipid4"
],
"biocyc":[
"META:KDO-LIPID-IVA"
],
"chebi":[
"CHEBI:20009",
"CHEBI:27439",
"CHEBI:1496",
"CHEBI:60364"
],
"inchi_key":[
"GPNCBCJEDRRCDW-ACUQGRCXSA-I"
],
"kegg.compound":[
"C06024"
],
"kegg.glycan":[
"G11161"
],
"metanetx.chemical":[
"MNXM1206"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03585"
]
}
},
{
"id":"dhxfut_c",
"name":"De-hypoxanthine futalosine",
"compartment":"c",
"charge":-1,
"formula":"C14H15O7",
"notes":{
"original_bigg_ids":[
"dhxfut_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhxfut"
],
"biocyc":[
"META:CPD-10484"
],
"chebi":[
"CHEBI:58864",
"CHEBI:51312"
],
"inchi_key":[
"XWPBBHHZDYSYMS-ZXRVKKJVSA-M"
],
"kegg.compound":[
"C17010"
],
"metanetx.chemical":[
"MNXM3255"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd17278"
]
}
},
{
"id":"glu__D_c",
"name":"D-Glutamate",
"compartment":"c",
"charge":-1,
"formula":"C5H8NO4",
"notes":{
"original_bigg_ids":[
"glu_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu__D"
],
"biocyc":[
"META:D-GLT"
],
"chebi":[
"CHEBI:29986",
"CHEBI:12979",
"CHEBI:21023",
"CHEBI:4183",
"CHEBI:29989",
"CHEBI:21022",
"CHEBI:15966"
],
"hmdb":[
"HMDB03339"
],
"inchi_key":[
"WHUUTDBJXJRKMK-GSVOUGTGSA-M"
],
"kegg.compound":[
"C00217"
],
"metanetx.chemical":[
"MNXM331"
],
"sabiork":[
"1978"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00186"
]
}
},
{
"id":"kdolipid4n_c",
"name":"KDO-lipid IV(A) (glucosediaminyl)",
"compartment":"c",
"charge":-5,
"formula":"C76H139N4O28P2",
"notes":{
"original_bigg_ids":[
"kdolipid4n_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdolipid4n"
],
"metanetx.chemical":[
"MNXM148295"
],
"sbo":"SBO:0000247"
}
},
{
"id":"glu__L_c",
"name":"L-Glutamate",
"compartment":"c",
"charge":-1,
"formula":"C5H8NO4",
"notes":{
"original_bigg_ids":[
"glu_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu__L"
],
"biocyc":[
"META:Glutamates",
"META:GLT"
],
"chebi":[
"CHEBI:76051",
"CHEBI:21301",
"CHEBI:29985",
"CHEBI:42825",
"CHEBI:29987",
"CHEBI:18237",
"CHEBI:24314",
"CHEBI:16015",
"CHEBI:13107",
"CHEBI:5431",
"CHEBI:21304",
"CHEBI:6224",
"CHEBI:14321",
"CHEBI:29988"
],
"hmdb":[
"HMDB00148",
"HMDB60475"
],
"inchi_key":[
"WHUUTDBJXJRKMK-VKHMYHEASA-M"
],
"kegg.compound":[
"C00025",
"C00302"
],
"kegg.drug":[
"D00007",
"D04341"
],
"metanetx.chemical":[
"MNXM89557"
],
"reactome.compound":[
"428614",
"29404",
"113552",
"210382"
],
"sabiork":[
"73",
"2010"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27177",
"cpd00023",
"cpd19002"
]
}
},
{
"id":"dimp_c",
"name":"DIMP C10H12N4O7P",
"compartment":"c",
"charge":-2,
"formula":"C10H11N4O7P",
"notes":{
"original_bigg_ids":[
"dimp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dimp"
],
"biocyc":[
"META:DIMP"
],
"chebi":[
"CHEBI:41998",
"CHEBI:43389",
"CHEBI:61194",
"CHEBI:19250",
"CHEBI:43315",
"CHEBI:44500",
"CHEBI:837",
"CHEBI:43384",
"CHEBI:43377",
"CHEBI:28806"
],
"hmdb":[
"HMDB06555"
],
"inchi_key":[
"PHNGFPPXDJJADG-RRKCRQDMSA-L"
],
"kegg.compound":[
"C06196"
],
"metanetx.chemical":[
"MNXM1922"
],
"reactome.compound":[
"109330",
"2509805"
],
"sabiork":[
"1858"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03704"
]
}
},
{
"id":"lac__D_c",
"name":"D-Lactate",
"compartment":"c",
"charge":-1,
"formula":"C3H5O3",
"notes":{
"original_bigg_ids":[
"lac_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"lac__D"
],
"biocyc":[
"META:D-LACTATE"
],
"chebi":[
"CHEBI:16004",
"CHEBI:341",
"CHEBI:18684",
"CHEBI:43701",
"CHEBI:11001",
"CHEBI:42111",
"CHEBI:42105"
],
"hmdb":[
"HMDB01311",
"HMDB00171"
],
"inchi_key":[
"JVTAAEKCZFNVCJ-UWTATZPHSA-M"
],
"kegg.compound":[
"C00256"
],
"metanetx.chemical":[
"MNXM285"
],
"sabiork":[
"1997",
"2284"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00221"
]
}
},
{
"id":"ditp_c",
"name":"DITP(4-)",
"compartment":"c",
"charge":-4,
"formula":"C10H11N4O13P3",
"notes":{
"original_bigg_ids":[
"ditp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ditp"
],
"biocyc":[
"META:DITP"
],
"chebi":[
"CHEBI:19251",
"CHEBI:28807",
"CHEBI:61382",
"CHEBI:10499"
],
"inchi_key":[
"UFJPAQSLHAGEBL-RRKCRQDMSA-J"
],
"kegg.compound":[
"C01345"
],
"metanetx.chemical":[
"MNXM1325"
],
"reactome.compound":[
"2509835"
],
"sabiork":[
"1713"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00977"
]
}
},
{
"id":"glu1sa_c",
"name":"L-Glutamate 1-semialdehyde",
"compartment":"c",
"formula":"C5H9NO3",
"notes":{
"original_bigg_ids":[
"glu1sa_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu1sa"
],
"biocyc":[
"META:GLUTAMATE-1-SEMIALDEHYDE"
],
"chebi":[
"CHEBI:24312",
"CHEBI:42823",
"CHEBI:18756",
"CHEBI:404",
"CHEBI:15757",
"CHEBI:11022",
"CHEBI:42827",
"CHEBI:57501"
],
"inchi_key":[
"MPUUQNGXJSEWTF-BYPYZUCNSA-N"
],
"kegg.compound":[
"C03741"
],
"metanetx.chemical":[
"MNXM1453"
],
"sabiork":[
"6826"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02345"
]
}
},
{
"id":"lac__L_c",
"name":"L-Lactate",
"compartment":"c",
"charge":-1,
"formula":"C3H5O3",
"notes":{
"original_bigg_ids":[
"lac_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"lac__L"
],
"biocyc":[
"META:L-LACTATE"
],
"chebi":[
"CHEBI:11065",
"CHEBI:16651",
"CHEBI:422",
"CHEBI:18783",
"CHEBI:12411"
],
"hmdb":[
"HMDB62492",
"HMDB00190",
"HMDB03328"
],
"inchi_key":[
"JVTAAEKCZFNVCJ-REOHCLBHSA-M"
],
"kegg.compound":[
"C00186"
],
"metanetx.chemical":[
"MNXM179"
],
"reactome.compound":[
"373863",
"29708",
"6807616"
],
"sabiork":[
"1312"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00159"
]
}
},
{
"id":"glu5p_c",
"name":"L-Glutamate 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H8NO7P",
"notes":{
"original_bigg_ids":[
"glu5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu5p"
],
"biocyc":[
"META:L-GLUTAMATE-5-P"
],
"chebi":[
"CHEBI:6230",
"CHEBI:58274",
"CHEBI:17798",
"CHEBI:13113",
"CHEBI:13108",
"CHEBI:21312"
],
"hmdb":[
"HMDB01228"
],
"inchi_key":[
"PJRXVIJAERNUIP-VKHMYHEASA-L"
],
"kegg.compound":[
"C03287"
],
"metanetx.chemical":[
"MNXM1280"
],
"sabiork":[
"1742"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02097"
]
}
},
{
"id":"glu5sa_c",
"name":"L-Glutamate 5-semialdehyde",
"compartment":"c",
"formula":"C5H9NO3",
"notes":{
"original_bigg_ids":[
"glu5sa_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu5sa"
],
"biocyc":[
"META:L-GLUTAMATE_GAMMA-SEMIALDEHYDE"
],
"chebi":[
"CHEBI:21302",
"CHEBI:58066",
"CHEBI:17232",
"CHEBI:13109",
"CHEBI:6225"
],
"hmdb":[
"HMDB02104"
],
"inchi_key":[
"KABXUUFDPUOJMW-BYPYZUCNSA-N"
],
"kegg.compound":[
"C01165"
],
"metanetx.chemical":[
"MNXM245"
],
"reactome.compound":[
"31339"
],
"sabiork":[
"2262"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00858"
]
}
},
{
"id":"dmbzid_c",
"name":"5,6-Dimethylbenzimidazole",
"compartment":"c",
"formula":"C9H10N2",
"notes":{
"original_bigg_ids":[
"dmbzid_c"
]
},
"annotation":{
"bigg.metabolite":[
"dmbzid"
],
"biocyc":[
"META:DIMETHYLBENZIMIDAZOLE"
],
"chebi":[
"CHEBI:14172",
"CHEBI:20516",
"CHEBI:4620",
"CHEBI:15890",
"CHEBI:42126"
],
"hmdb":[
"HMDB03701"
],
"inchi_key":[
"LJUQGASMPRMWIW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C03114"
],
"metanetx.chemical":[
"MNXM1531"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01997"
]
}
},
{
"id":"dmlz_c",
"name":"6,7-Dimethyl-8-(1-D-ribityl)lumazine",
"compartment":"c",
"formula":"C13H18N4O6",
"notes":{
"original_bigg_ids":[
"dmlz_c"
]
},
"annotation":{
"bigg.metabolite":[
"dmlz"
],
"biocyc":[
"META:DIMETHYL-D-RIBITYL-LUMAZINE"
],
"chebi":[
"CHEBI:20682",
"CHEBI:58201",
"CHEBI:17601",
"CHEBI:2154",
"CHEBI:12185"
],
"hmdb":[
"HMDB03826"
],
"inchi_key":[
"SXDXRJZUAJBNFL-XKSSXDPKSA-M"
],
"kegg.compound":[
"C04332"
],
"metanetx.chemical":[
"MNXM1313"
],
"sabiork":[
"7240"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02656"
]
}
},
{
"id":"laccoa_c",
"name":"Lactoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C24H36N7O18P3S",
"notes":{
"original_bigg_ids":[
"laccoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"laccoa"
],
"chebi":[
"CHEBI:25008",
"CHEBI:14499",
"CHEBI:6356",
"CHEBI:15529",
"CHEBI:57382"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4286589f-5683-46cb-b1eb-39e51d7f56de"
],
"hmdb":[
"HMDB02346"
],
"inchi_key":[
"VIWKEBOLLIEAIL-FBMOWMAESA-J"
],
"kegg.compound":[
"C00827"
],
"lipidmaps":[
"LMFA07050339"
],
"metanetx.chemical":[
"MNXM2388"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00617",
"cpd27396"
]
}
},
{
"id":"dmpp_c",
"name":"Dimethylallyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C5H9O7P2",
"notes":{
"original_bigg_ids":[
"dmpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dmpp"
],
"biocyc":[
"META:CPD-4211"
],
"chebi":[
"CHEBI:14883",
"CHEBI:57623",
"CHEBI:8394",
"CHEBI:12280",
"CHEBI:4616",
"CHEBI:23803",
"CHEBI:16057",
"CHEBI:26245",
"CHEBI:341937",
"CHEBI:14169",
"CHEBI:42074",
"CHEBI:18108"
],
"hmdb":[
"HMDB02101",
"HMDB01120"
],
"inchi_key":[
"CBIDRCWHNCKSTO-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00235"
],
"lipidmaps":[
"LMPR01010001"
],
"metanetx.chemical":[
"MNXM132"
],
"reactome.compound":[
"1132235",
"6787596",
"191324"
],
"sabiork":[
"1986"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00202"
]
}
},
{
"id":"leu__L_c",
"name":"L-Leucine",
"compartment":"c",
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"leu_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"leu__L"
],
"biocyc":[
"META:LEU"
],
"chebi":[
"CHEBI:32620",
"CHEBI:25017",
"CHEBI:43695",
"CHEBI:21348",
"CHEBI:13131",
"CHEBI:43733",
"CHEBI:43646",
"CHEBI:43814",
"CHEBI:6260",
"CHEBI:32628",
"CHEBI:32627",
"CHEBI:10866",
"CHEBI:57427",
"CHEBI:32619",
"CHEBI:15603"
],
"hmdb":[
"HMDB00687",
"HMDB62203"
],
"inchi_key":[
"ROHFNLRQFUQHCH-YFKPBYRVSA-N"
],
"kegg.compound":[
"C16439",
"C00123"
],
"kegg.drug":[
"D00030"
],
"lipidmaps":[
"LMFA01100048"
],
"metanetx.chemical":[
"MNXM140"
],
"reactome.compound":[
"29588",
"113580",
"351964"
],
"sabiork":[
"21059",
"69"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00107",
"cpd15143"
]
}
},
{
"id":"dnad_c",
"name":"Deamino-NAD+",
"compartment":"c",
"charge":-2,
"formula":"C21H24N6O15P2",
"notes":{
"original_bigg_ids":[
"dnad_c"
]
},
"annotation":{
"bigg.metabolite":[
"dnad"
],
"biocyc":[
"META:DEAMIDO-NAD"
],
"chebi":[
"CHEBI:14104",
"CHEBI:58437",
"CHEBI:14103",
"CHEBI:4340",
"CHEBI:14105",
"CHEBI:18304",
"CHEBI:23567"
],
"hmdb":[
"HMDB01179"
],
"inchi_key":[
"SENPVEZBRZQVST-HISDBWNOSA-L"
],
"kegg.compound":[
"C00857"
],
"metanetx.chemical":[
"MNXM309"
],
"reactome.compound":[
"8938090",
"200499",
"197256"
],
"sabiork":[
"1349"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00638"
]
}
},
{
"id":"glutcoa_c",
"name":"Glutaryl-CoA mitochondria",
"compartment":"c",
"charge":-5,
"formula":"C26H37N7O19P3S",
"notes":{
"original_bigg_ids":[
"glutcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"glutcoa"
],
"biocyc":[
"META:GLUTARYL-COA"
],
"chebi":[
"CHEBI:57378",
"CHEBI:24332",
"CHEBI:15524",
"CHEBI:5436",
"CHEBI:14326"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/cdc62749-df60-4fea-8d86-a1fbf3c65cb1"
],
"hmdb":[
"HMDB01339"
],
"inchi_key":[
"SYKWLIJQEHRDNH-CKRMAKSASA-I"
],
"kegg.compound":[
"C00527"
],
"lipidmaps":[
"LMFA07050324"
],
"metanetx.chemical":[
"MNXM382"
],
"reactome.compound":[
"70955"
],
"sabiork":[
"2075"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00413"
]
}
},
{
"id":"leutrna_c",
"name":"L-Leucyl-tRNA(Leu)",
"compartment":"c",
"charge":1,
"formula":"C6H12NOR",
"notes":{
"original_bigg_ids":[
"leutrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"leutrna"
],
"chebi":[
"CHEBI:16624",
"CHEBI:13133",
"CHEBI:6262",
"CHEBI:13134"
],
"kegg.compound":[
"C02047"
],
"metanetx.chemical":[
"MNXM697"
],
"reactome.compound":[
"379773",
"379757"
],
"sabiork":[
"3869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12003"
]
}
},
{
"id":"glutrna_c",
"name":"L-Glutamyl-tRNA(Glu)",
"compartment":"c",
"formula":"C5H7NO3R",
"notes":{
"original_bigg_ids":[
"glutrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"glutrna"
],
"chebi":[
"CHEBI:29157",
"CHEBI:13114",
"CHEBI:6232"
],
"kegg.compound":[
"C02987"
],
"metanetx.chemical":[
"MNXM89752"
],
"reactome.compound":[
"379744",
"379751"
],
"sabiork":[
"3856"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12227"
]
}
},
{
"id":"dpcoa_c",
"name":"Dephospho-CoA",
"compartment":"c",
"charge":-2,
"formula":"C21H33N7O13P2S",
"notes":{
"original_bigg_ids":[
"dpcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"dpcoa"
],
"biocyc":[
"META:DEPHOSPHO-COA"
],
"chebi":[
"CHEBI:14124",
"CHEBI:41614",
"CHEBI:23642",
"CHEBI:15468",
"CHEBI:11793",
"CHEBI:57328",
"CHEBI:4436"
],
"hmdb":[
"HMDB01373"
],
"inchi_key":[
"KDTSHFARGAKYJN-IBOSZNHHSA-L"
],
"kegg.compound":[
"C00882"
],
"lipidmaps":[
"LMFA07050315"
],
"metanetx.chemical":[
"MNXM481"
],
"reactome.compound":[
"196778"
],
"sabiork":[
"27337",
"1400"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00655"
]
}
},
{
"id":"lipa_c",
"name":"KDO(2)-lipid (A)",
"compartment":"c",
"charge":-6,
"formula":"C110H196N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipa"
],
"chebi":[
"CHEBI:27963",
"CHEBI:4476",
"CHEBI:23656",
"CHEBI:58540"
],
"inchi_key":[
"DIXUKJUHGLIZGU-OIPVZEHTSA-H"
],
"kegg.compound":[
"C06026"
],
"lipidmaps":[
"LMSL02000001"
],
"metanetx.chemical":[
"MNXM946"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03587"
]
}
},
{
"id":"dptne_c",
"name":"Diploptene",
"compartment":"c",
"formula":"C30H50",
"notes":{
"original_bigg_ids":[
"dplpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"dptne"
],
"biocyc":[
"META:HOP-2229-ENE"
],
"chebi":[
"CHEBI:4648"
],
"inchi_key":[
"HHXYJYBYNZMZKX-PYQRSULMSA-N"
],
"kegg.compound":[
"C06310"
],
"lipidmaps":[
"LMPR04000001"
],
"metanetx.chemical":[
"MNXM4615"
],
"sabiork":[
"8530"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03751"
]
}
},
{
"id":"glx_c",
"name":"Glyoxylate",
"compartment":"c",
"charge":-1,
"formula":"C2H1O3",
"notes":{
"original_bigg_ids":[
"glx_c"
]
},
"annotation":{
"bigg.metabolite":[
"glx"
],
"biocyc":[
"META:GLYOX"
],
"chebi":[
"CHEBI:24420",
"CHEBI:36655",
"CHEBI:14368",
"CHEBI:24421",
"CHEBI:42767",
"CHEBI:16891",
"CHEBI:35977",
"CHEBI:5509"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/cdffdb1a-3322-4cc1-9171-d857bfaa198a",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/aecbda66-6e98-4c11-aeaf-6a072f4f963c",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/9dc0aa3b-447a-4b5d-8157-501b036f9626",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/43b74f4f-bc8a-4b8b-b587-c97d8e9eed48"
],
"hmdb":[
"HMDB00119"
],
"inchi_key":[
"HHLFWLYXYJOTON-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00048"
],
"metanetx.chemical":[
"MNXM69"
],
"reactome.compound":[
"904849",
"389678"
],
"sabiork":[
"1838"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00040"
]
}
},
{
"id":"lipan_c",
"name":"KDO(2)-lipid (A) (glucosediaminyl)",
"compartment":"c",
"charge":-6,
"formula":"C110H198N4O37P2",
"notes":{
"original_bigg_ids":[
"lipan_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipan"
],
"metanetx.chemical":[
"MNXM148291"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gly_c",
"name":"Glycine",
"compartment":"c",
"formula":"C2H5NO2",
"notes":{
"original_bigg_ids":[
"gly_c"
]
},
"annotation":{
"bigg.metabolite":[
"gly"
],
"biocyc":[
"META:GLY"
],
"chebi":[
"CHEBI:32508",
"CHEBI:32507",
"CHEBI:15428",
"CHEBI:42964",
"CHEBI:14344",
"CHEBI:24368",
"CHEBI:10792",
"CHEBI:5460",
"CHEBI:57305"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/19441357-44af-48e1-b5ac-0e48c8dcbb87",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/870d7ca5-6659-40eb-8b5d-858bd29cddaa"
],
"hmdb":[
"HMDB00123"
],
"inchi_key":[
"DHMQDGOQFOQNFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00037"
],
"kegg.drug":[
"D00011"
],
"metanetx.chemical":[
"MNXM29"
],
"reactome.compound":[
"29424",
"193446",
"113545",
"159549",
"266029"
],
"sabiork":[
"66"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00033"
]
}
},
{
"id":"dscl_c",
"name":"Dihydrosirohydrochlorin",
"compartment":"c",
"charge":-7,
"formula":"C42H41N4O16",
"notes":{
"original_bigg_ids":[
"dscl_c"
]
},
"annotation":{
"bigg.metabolite":[
"dscl"
],
"biocyc":[
"META:DIHYDROSIROHYDROCHLORIN"
],
"chebi":[
"CHEBI:58827",
"CHEBI:50602",
"CHEBI:14870",
"CHEBI:8370"
],
"inchi_key":[
"OQIIYZQTTMKFAU-ZNLOQLQNSA-G"
],
"kegg.compound":[
"C02463"
],
"metanetx.chemical":[
"MNXM672"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01620"
]
}
},
{
"id":"lipidA_c",
"name":"2,3,2'3'-Tetrakis(beta-hydroxymyristoyl)-D-glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C68H126N2O23P2",
"notes":{
"original_bigg_ids":[
"lipidA_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidA"
],
"biocyc":[
"META:LIPID-IV-A"
],
"chebi":[
"CHEBI:19294",
"CHEBI:11407",
"CHEBI:58603",
"CHEBI:19292",
"CHEBI:29056",
"CHEBI:863",
"CHEBI:28165"
],
"inchi_key":[
"KVJWZTLXIROHIL-QDORLFPLSA-J"
],
"kegg.compound":[
"C04919"
],
"lipidmaps":[
"LMSL01040001"
],
"metanetx.chemical":[
"MNXM1754"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02993"
]
}
},
{
"id":"dtbt_c",
"name":"Dethiobiotin",
"compartment":"c",
"charge":-1,
"formula":"C10H17N2O3",
"notes":{
"original_bigg_ids":[
"dtbt_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtbt"
],
"biocyc":[
"META:DETHIOBIOTIN"
],
"chebi":[
"CHEBI:42280",
"CHEBI:14132",
"CHEBI:36990",
"CHEBI:16691",
"CHEBI:42279",
"CHEBI:23649",
"CHEBI:4457",
"CHEBI:57861"
],
"hmdb":[
"HMDB03581"
],
"inchi_key":[
"AUTOLBMXDDTRRT-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01909"
],
"metanetx.chemical":[
"MNXM1020"
],
"sabiork":[
"5879"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01311"
]
}
},
{
"id":"glyald_c",
"name":"D-Glyceraldehyde",
"compartment":"c",
"formula":"C3H6O3",
"notes":{
"original_bigg_ids":[
"glyald_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyald"
],
"biocyc":[
"META:GLYCERALD"
],
"chebi":[
"CHEBI:17378",
"CHEBI:21025",
"CHEBI:4186",
"CHEBI:12982",
"CHEBI:39973"
],
"inchi_key":[
"MNQZXJOMYWMBOU-VKHMYHEASA-N"
],
"kegg.compound":[
"C00577"
],
"metanetx.chemical":[
"MNXM435"
],
"reactome.compound":[
"30393"
],
"sabiork":[
"1409"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00448"
]
}
},
{
"id":"lipidAds_c",
"name":"Lipid A Disaccharide",
"compartment":"c",
"charge":-2,
"formula":"C68H127N2O20P",
"notes":{
"original_bigg_ids":[
"lipidAds_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidAds"
],
"biocyc":[
"META:BISOHMYR-GLC"
],
"chebi":[
"CHEBI:18380",
"CHEBI:11415",
"CHEBI:11414",
"CHEBI:19293",
"CHEBI:58466",
"CHEBI:862"
],
"inchi_key":[
"HLDJGHAAKRKPAV-QDORLFPLSA-L"
],
"kegg.compound":[
"C04932"
],
"metanetx.chemical":[
"MNXM1569"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03002"
]
}
},
{
"id":"glyc_c",
"name":"Glycerol",
"compartment":"c",
"formula":"C3H8O3",
"notes":{
"original_bigg_ids":[
"glyc_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyc"
],
"biocyc":[
"META:GLYCEROL"
],
"chebi":[
"CHEBI:5448",
"CHEBI:14334",
"CHEBI:42998",
"CHEBI:17754",
"CHEBI:24351",
"CHEBI:131422"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/48edd8a9-6a4a-4900-b0cf-97b1ccaa1125",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2e8c8093-3269-46b3-be2e-f1df9fdde25c"
],
"hmdb":[
"HMDB00131"
],
"inchi_key":[
"PEDCQBHIVMGVHV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00116"
],
"kegg.drug":[
"D00028"
],
"metanetx.chemical":[
"MNXM89612"
],
"reactome.compound":[
"192438",
"76116"
],
"sabiork":[
"1303"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00100"
]
}
},
{
"id":"dtdp_c",
"name":"DTDP C10H13N2O11P2",
"compartment":"c",
"charge":-3,
"formula":"C10H13N2O11P2",
"notes":{
"original_bigg_ids":[
"dtdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdp"
],
"biocyc":[
"META:TDP"
],
"chebi":[
"CHEBI:58369",
"CHEBI:26998",
"CHEBI:14077",
"CHEBI:10500",
"CHEBI:18075",
"CHEBI:46061"
],
"hmdb":[
"HMDB01274"
],
"inchi_key":[
"UJLXYODCHAELLY-XLPZGREQSA-K"
],
"kegg.compound":[
"C00363"
],
"metanetx.chemical":[
"MNXM152"
],
"sabiork":[
"1333"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00297"
]
}
},
{
"id":"lipidAdsn_c",
"name":"Lipid A Disaccharide (glucosediaminyl)",
"compartment":"c",
"charge":-2,
"formula":"C68H129N4O18P",
"notes":{
"original_bigg_ids":[
"lipidAdsn_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidAdsn"
],
"metanetx.chemical":[
"MNXM148327"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dtdp4d6dg_c",
"name":"DTDP-4-dehydro-6-deoxy-D-glucose",
"compartment":"c",
"charge":-2,
"formula":"C16H22N2O15P2",
"notes":{
"original_bigg_ids":[
"dtdp4d6dg_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdp4d6dg"
],
"biocyc":[
"META:DTDP-DEOH-DEOXY-GLUCOSE"
],
"chebi":[
"CHEBI:14081",
"CHEBI:62829",
"CHEBI:10510",
"CHEBI:57649",
"CHEBI:16128",
"CHEBI:23542"
],
"hmdb":[
"HMDB60081"
],
"inchi_key":[
"PSXWNITXWWECNY-UCBTUHGZSA-L"
],
"kegg.compound":[
"C11907"
],
"metanetx.chemical":[
"MNXM451"
],
"sabiork":[
"1563"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00521"
]
}
},
{
"id":"dtdp4d6dm_c",
"name":"DTDP-4-dehydro-6-deoxy-L-mannose",
"compartment":"c",
"charge":-2,
"formula":"C16H22N2O15P2",
"notes":{
"original_bigg_ids":[
"dtdp4d6dm_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdp4d6dm"
],
"biocyc":[
"META:DTDP-DEOH-DEOXY-MANNOSE"
],
"chebi":[
"CHEBI:10511",
"CHEBI:15744",
"CHEBI:14082",
"CHEBI:45868",
"CHEBI:23543",
"CHEBI:57494",
"CHEBI:62830"
],
"inchi_key":[
"PSXWNITXWWECNY-LPVGZGSHSA-L"
],
"kegg.compound":[
"C00688"
],
"metanetx.chemical":[
"MNXM2371"
],
"sabiork":[
"1564"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08300",
"cpd00522"
]
}
},
{
"id":"glyc3p_c",
"name":"Glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C3H7O6P",
"notes":{
"original_bigg_ids":[
"glyc3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyc3p"
],
"biocyc":[
"META:GLYCEROL-3P"
],
"chebi":[
"CHEBI:12843",
"CHEBI:26705",
"CHEBI:57597",
"CHEBI:12848",
"CHEBI:42793",
"CHEBI:10648",
"CHEBI:15978"
],
"hmdb":[
"HMDB02722",
"HMDB00126"
],
"inchi_key":[
"AWUCVROLDVIAJX-GSVOUGTGSA-L"
],
"kegg.compound":[
"C00093"
],
"metanetx.chemical":[
"MNXM66"
],
"reactome.compound":[
"188458",
"76114"
],
"sabiork":[
"1296"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00080"
]
}
},
{
"id":"lipidAn_c",
"name":"2,3,2'3'-Tetrakis(beta-hydroxymyristoyl)-D-glucosaminyl-1,6-beta-D-glucosediaminyl 1,4'-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C68H128N4O21P2",
"notes":{
"original_bigg_ids":[
"lipidAn_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidAn"
],
"metanetx.chemical":[
"MNXM147705"
],
"sbo":"SBO:0000247"
}
},
{
"id":"glyclt_c",
"name":"Glycolate C2H3O3",
"compartment":"c",
"charge":-1,
"formula":"C2H3O3",
"notes":{
"original_bigg_ids":[
"glyclt_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyclt"
],
"biocyc":[
"META:GLYCOLLATE"
],
"chebi":[
"CHEBI:24388",
"CHEBI:5475",
"CHEBI:17497",
"CHEBI:14348",
"CHEBI:24390",
"CHEBI:29805",
"CHEBI:42865"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/65f8bf08-1b83-49cd-8f44-8591a6b78f5f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/fadcee01-99f5-4203-9a94-43ad453f2124",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a241561-612f-4e82-99c8-d4ce30c862bf",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/8b8341da-ab0c-4974-87a5-7515166e2965"
],
"hmdb":[
"HMDB03035",
"HMDB00115"
],
"inchi_key":[
"AEMRFAOFKBGASW-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00160"
],
"metanetx.chemical":[
"MNXM222"
],
"reactome.compound":[
"389822"
],
"sabiork":[
"1953"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12347",
"cpd00139"
]
}
},
{
"id":"dtdpglu_c",
"name":"DTDPglucose",
"compartment":"c",
"charge":-2,
"formula":"C16H24N2O16P2",
"notes":{
"original_bigg_ids":[
"dtdpglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdpglu"
],
"biocyc":[
"META:DTDP-D-GLUCOSE"
],
"chebi":[
"CHEBI:57477",
"CHEBI:14091",
"CHEBI:10526",
"CHEBI:10528",
"CHEBI:14089",
"CHEBI:15700",
"CHEBI:23556"
],
"hmdb":[
"HMDB62805"
],
"inchi_key":[
"YSYKRGRSMLTJNL-URARBOGNSA-L"
],
"kegg.compound":[
"C00842"
],
"metanetx.chemical":[
"MNXM1376"
],
"sabiork":[
"3923"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00626"
]
}
},
{
"id":"lipidX_c",
"name":"2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C34H64NO12P",
"notes":{
"original_bigg_ids":[
"lipidX_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidX"
],
"biocyc":[
"META:BISOHMYR-GLUCOSAMINYL-1P"
],
"chebi":[
"CHEBI:16942",
"CHEBI:57957",
"CHEBI:19303",
"CHEBI:11413",
"CHEBI:870"
],
"inchi_key":[
"HEHQDWUWJVPREQ-XQJZMFRCSA-L"
],
"kegg.compound":[
"C04824"
],
"lipidmaps":[
"LMSL01020001"
],
"metanetx.chemical":[
"MNXM1839"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29679",
"cpd02930"
]
}
},
{
"id":"dtdprmn_c",
"name":"DTDP-L-rhamnose",
"compartment":"c",
"charge":-2,
"formula":"C16H24N2O15P2",
"notes":{
"original_bigg_ids":[
"dtdprmn_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdprmn"
],
"biocyc":[
"META:DTDP-RHAMNOSE"
],
"chebi":[
"CHEBI:15774",
"CHEBI:23547",
"CHEBI:46114",
"CHEBI:61119",
"CHEBI:35452",
"CHEBI:10518",
"CHEBI:14083",
"CHEBI:57510"
],
"hmdb":[
"HMDB06354"
],
"inchi_key":[
"ZOSQFDVXNQFKBY-CGAXJHMRSA-L"
],
"kegg.compound":[
"C03319"
],
"metanetx.chemical":[
"MNXM899"
],
"sabiork":[
"1579"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02113"
]
}
},
{
"id":"glycogen_c",
"name":"Glycogen C6H10O5",
"compartment":"c",
"formula":"C6H10O5",
"notes":{
"original_bigg_ids":[
"glycogen_c"
]
},
"annotation":{
"bigg.metabolite":[
"glycogen"
],
"biocyc":[
"META:Glycogens"
],
"chebi":[
"CHEBI:24379",
"CHEBI:28087",
"CHEBI:5466",
"CHEBI:24384"
],
"hmdb":[
"HMDB00757"
],
"kegg.compound":[
"C00182"
],
"kegg.glycan":[
"G11603"
],
"metanetx.chemical":[
"MNXM55375"
],
"sabiork":[
"1962"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27186",
"cpd00155"
]
}
},
{
"id":"lipidXn_c",
"name":"2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosediamine 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C34H65N2O11P",
"notes":{
"original_bigg_ids":[
"lipidXn_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidXn"
],
"metanetx.chemical":[
"MNXM147707"
],
"sbo":"SBO:0000247"
}
},
{
"id":"glytrna_c",
"name":"Glycyl-tRNA(Gly)",
"compartment":"c",
"charge":1,
"formula":"C2H4NOR",
"notes":{
"original_bigg_ids":[
"glytrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"glytrna"
],
"chebi":[
"CHEBI:29156",
"CHEBI:14363",
"CHEBI:5503"
],
"kegg.compound":[
"C02412"
],
"metanetx.chemical":[
"MNXM89763"
],
"reactome.compound":[
"379781",
"379784"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12100"
]
}
},
{
"id":"dtmp_c",
"name":"DTMP C10H13N2O8P",
"compartment":"c",
"charge":-2,
"formula":"C10H13N2O8P",
"notes":{
"original_bigg_ids":[
"dtmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtmp"
],
"biocyc":[
"META:TMP"
],
"chebi":[
"CHEBI:47711",
"CHEBI:26999",
"CHEBI:63549",
"CHEBI:17013",
"CHEBI:63528",
"CHEBI:45772",
"CHEBI:45762",
"CHEBI:46960",
"CHEBI:45759",
"CHEBI:10529",
"CHEBI:45926",
"CHEBI:14092",
"CHEBI:46013",
"CHEBI:15246",
"CHEBI:46036"
],
"hmdb":[
"HMDB01227"
],
"inchi_key":[
"GYOZYWVXFNDGLU-XLPZGREQSA-L"
],
"kegg.compound":[
"C00364"
],
"metanetx.chemical":[
"MNXM257"
],
"reactome.compound":[
"109366"
],
"sabiork":[
"65"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00298"
]
}
},
{
"id":"lplarg_c",
"name":"Lipoyl carrier protein LarG",
"compartment":"c",
"formula":"X",
"notes":{
"original_bigg_ids":[
"lplarg_c"
]
},
"annotation":{
"bigg.metabolite":[
"lplarg"
],
"metanetx.chemical":[
"MNXM147500"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dttp_c",
"name":"DTTP C10H13N2O14P3",
"compartment":"c",
"charge":-4,
"formula":"C10H13N2O14P3",
"notes":{
"original_bigg_ids":[
"dttp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dttp"
],
"biocyc":[
"META:TTP"
],
"chebi":[
"CHEBI:27000",
"CHEBI:37568",
"CHEBI:10530",
"CHEBI:58370",
"CHEBI:14093",
"CHEBI:46175",
"CHEBI:18077"
],
"hmdb":[
"HMDB01342"
],
"inchi_key":[
"NHVNXKFIZYSCEB-XLPZGREQSA-J"
],
"kegg.compound":[
"C00459"
],
"metanetx.chemical":[
"MNXM394"
],
"sabiork":[
"1679"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00357"
]
}
},
{
"id":"gmeACP_c",
"name":"Glutaryl-[acyl-carrier protein] methyl ester",
"compartment":"c",
"charge":-1,
"formula":"C17H29N2O10PRS",
"notes":{
"original_bigg_ids":[
"gmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmeACP"
],
"biocyc":[
"META:Glutaryl-ACP-methyl-esters"
],
"kegg.compound":[
"C20375"
],
"metanetx.chemical":[
"MNXM11700"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27180"
]
}
},
{
"id":"lpro_c",
"name":"Lipoylprotein S2X",
"compartment":"c",
"formula":"S2X",
"notes":{
"original_bigg_ids":[
"lpro_c"
]
},
"annotation":{
"bigg.metabolite":[
"lpro"
],
"chebi":[
"CHEBI:6500",
"CHEBI:15804",
"CHEBI:14523"
],
"kegg.compound":[
"C02051"
],
"metanetx.chemical":[
"MNXM998"
],
"sabiork":[
"5965"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27417",
"cpd12005"
]
}
},
{
"id":"gmhep17bp_c",
"name":"D-Glycero-D-manno-heptose 1,7-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C7H12O13P2",
"notes":{
"original_bigg_ids":[
"gmhep17bp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmhep17bp"
],
"chebi":[
"CHEBI:59957",
"CHEBI:4188"
],
"inchi_key":[
"LMTGTTLGDUACSJ-NNPWBXLPSA-J"
],
"metanetx.chemical":[
"MNXM48518"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29677"
]
}
},
{
"id":"dudp_c",
"name":"DUDP C9H11N2O11P2",
"compartment":"c",
"charge":-3,
"formula":"C9H11N2O11P2",
"notes":{
"original_bigg_ids":[
"dudp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dudp"
],
"biocyc":[
"META:DUDP"
],
"chebi":[
"CHEBI:60471",
"CHEBI:19262",
"CHEBI:10531",
"CHEBI:28850"
],
"hmdb":[
"HMDB01000"
],
"inchi_key":[
"QHWZTVCCBMIIKE-SHYZEUOFSA-K"
],
"kegg.compound":[
"C01346"
],
"metanetx.chemical":[
"MNXM572"
],
"sabiork":[
"1714"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00978"
]
}
},
{
"id":"lys__L_c",
"name":"L-Lysine",
"compartment":"c",
"charge":1,
"formula":"C6H15N2O2",
"notes":{
"original_bigg_ids":[
"lys_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"lys__L"
],
"biocyc":[
"META:LYS"
],
"chebi":[
"CHEBI:6264",
"CHEBI:32564",
"CHEBI:13135",
"CHEBI:32550",
"CHEBI:21351",
"CHEBI:18019",
"CHEBI:32552",
"CHEBI:32551",
"CHEBI:133538",
"CHEBI:32565",
"CHEBI:43950",
"CHEBI:32563",
"CHEBI:25094"
],
"hmdb":[
"HMDB03405",
"HMDB00182",
"HMDB62809"
],
"inchi_key":[
"KDXKERNSBIXSRK-YFKPBYRVSA-O"
],
"kegg.compound":[
"C00047",
"C16440"
],
"kegg.drug":[
"D02304"
],
"metanetx.chemical":[
"MNXM78"
],
"reactome.compound":[
"29444",
"351979",
"351991"
],
"sabiork":[
"22945",
"79"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19182",
"cpd00039"
]
}
},
{
"id":"dump_c",
"name":"DUMP C9H11N2O8P",
"compartment":"c",
"charge":-2,
"formula":"C9H11N2O8P",
"notes":{
"original_bigg_ids":[
"dump_c"
]
},
"annotation":{
"bigg.metabolite":[
"dump"
],
"biocyc":[
"META:DUMP"
],
"chebi":[
"CHEBI:19263",
"CHEBI:14094",
"CHEBI:46288",
"CHEBI:246422",
"CHEBI:47722",
"CHEBI:17622",
"CHEBI:42245",
"CHEBI:46286",
"CHEBI:10532"
],
"hmdb":[
"HMDB01409"
],
"inchi_key":[
"JSRLJPSBLDHEIO-SHYZEUOFSA-L"
],
"kegg.compound":[
"C00365"
],
"metanetx.chemical":[
"MNXM234"
],
"reactome.compound":[
"109382",
"500742"
],
"sabiork":[
"1334"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00299"
]
}
},
{
"id":"gmhep1p_c",
"name":"D-Glycero-D-manno-heptose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C7H13O10P",
"notes":{
"original_bigg_ids":[
"gmhep1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmhep1p"
],
"biocyc":[
"META:D-BETA-D-HEPTOSE-1-P"
],
"chebi":[
"CHEBI:21031",
"CHEBI:60002",
"CHEBI:28137",
"CHEBI:61593",
"CHEBI:4189"
],
"inchi_key":[
"KMEJCSKJXSBBAN-QTNLNCNHSA-L"
],
"kegg.compound":[
"C07838"
],
"metanetx.chemical":[
"MNXM1661"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04920"
]
}
},
{
"id":"dutp_c",
"name":"DUTP C9H11N2O14P3",
"compartment":"c",
"charge":-4,
"formula":"C9H11N2O14P3",
"notes":{
"original_bigg_ids":[
"dutp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dutp"
],
"biocyc":[
"META:DUTP"
],
"chebi":[
"CHEBI:17625",
"CHEBI:14095",
"CHEBI:10533",
"CHEBI:61555",
"CHEBI:19264",
"CHEBI:58212"
],
"hmdb":[
"HMDB01191"
],
"inchi_key":[
"AHCYMLUZIRLXAA-SHYZEUOFSA-J"
],
"kegg.compound":[
"C00460"
],
"metanetx.chemical":[
"MNXM452"
],
"reactome.compound":[
"500739"
],
"sabiork":[
"1680"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00358"
]
}
},
{
"id":"lystrna_c",
"name":"L-Lysine-tRNA (Lys)",
"compartment":"c",
"charge":2,
"formula":"C6H14N2OR",
"notes":{
"original_bigg_ids":[
"lystrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"lystrna"
],
"chebi":[
"CHEBI:6267",
"CHEBI:13138",
"CHEBI:13137",
"CHEBI:16047"
],
"kegg.compound":[
"C01931"
],
"metanetx.chemical":[
"MNXM89922"
],
"reactome.compound":[
"379795",
"379736"
],
"sabiork":[
"3865"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15249",
"cpd01326"
]
}
},
{
"id":"dxyl5p_c",
"name":"1-deoxy-D-xylulose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O7P",
"notes":{
"original_bigg_ids":[
"dxyl5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"dxyl5p"
],
"biocyc":[
"META:DEOXYXYLULOSE-5P"
],
"chebi":[
"CHEBI:57792",
"CHEBI:11254",
"CHEBI:16493",
"CHEBI:622"
],
"hmdb":[
"HMDB01213"
],
"inchi_key":[
"AJPADPZSRRUGHI-RFZPGFLSSA-L"
],
"kegg.compound":[
"C11437"
],
"metanetx.chemical":[
"MNXM622"
],
"sabiork":[
"13504"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08289"
]
}
},
{
"id":"gmhep7p_c",
"name":"D-Glycero-D-manno-heptose 7-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C7H13O10P",
"notes":{
"original_bigg_ids":[
"gmhep7p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmhep7p"
],
"biocyc":[
"META:D-ALPHABETA-D-HEPTOSE-7-PHOSPHATE",
"META:CPD-12543"
],
"chebi":[
"CHEBI:28723",
"CHEBI:4190",
"CHEBI:59955",
"CHEBI:60202",
"CHEBI:21032",
"CHEBI:60204"
],
"inchi_key":[
"SDADNVAZGVDAIM-ZUHYCWGWSA-L"
],
"kegg.compound":[
"C07836",
"C19882"
],
"metanetx.chemical":[
"MNXM722761"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21122",
"cpd26805",
"cpd04918"
]
}
},
{
"id":"mal__L_c",
"name":"L-Malate",
"compartment":"c",
"charge":-2,
"formula":"C4H4O5",
"notes":{
"original_bigg_ids":[
"mal_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"mal__L"
],
"biocyc":[
"META:MAL"
],
"chebi":[
"CHEBI:15589",
"CHEBI:30797",
"CHEBI:423",
"CHEBI:18784",
"CHEBI:18785",
"CHEBI:13140",
"CHEBI:11066"
],
"hmdb":[
"HMDB00156"
],
"inchi_key":[
"BJEPYKJPYRNKOW-REOHCLBHSA-L"
],
"kegg.compound":[
"C00149"
],
"metanetx.chemical":[
"MNXM98"
],
"reactome.compound":[
"198498",
"113544"
],
"sabiork":[
"1918"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00130"
]
}
},
{
"id":"gmp_c",
"name":"GMP C10H12N5O8P",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O8P",
"notes":{
"original_bigg_ids":[
"gmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmp"
],
"biocyc":[
"META:GMP"
],
"chebi":[
"CHEBI:24449",
"CHEBI:47450",
"CHEBI:58115",
"CHEBI:17345",
"CHEBI:29058",
"CHEBI:13341",
"CHEBI:42979",
"CHEBI:40119",
"CHEBI:42615",
"CHEBI:14381",
"CHEBI:24450",
"CHEBI:42892",
"CHEBI:5228",
"CHEBI:42831",
"CHEBI:42887",
"CHEBI:42647"
],
"hmdb":[
"HMDB01397"
],
"inchi_key":[
"RQFCJASXJCIDSX-UUOKFMHZSA-L"
],
"kegg.compound":[
"C00144"
],
"metanetx.chemical":[
"MNXM113"
],
"sabiork":[
"1309"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00126"
]
}
},
{
"id":"e4p_c",
"name":"D-Erythrose 4-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C4H7O7P",
"notes":{
"original_bigg_ids":[
"e4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"e4p"
],
"biocyc":[
"META:ERYTHROSE-4P"
],
"chebi":[
"CHEBI:4114",
"CHEBI:20927",
"CHEBI:12921",
"CHEBI:48153",
"CHEBI:16897",
"CHEBI:42349"
],
"hmdb":[
"HMDB01321"
],
"inchi_key":[
"NGHMDNPXVRFFGS-IUYQGCFVSA-L"
],
"kegg.compound":[
"C00279"
],
"metanetx.chemical":[
"MNXM258"
],
"reactome.compound":[
"29878"
],
"sabiork":[
"1324"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00236"
]
}
},
{
"id":"malACP_c",
"name":"Malonyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-2,
"formula":"C14H22N2O10PRS",
"notes":{
"original_bigg_ids":[
"malACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"malACP"
],
"biocyc":[
"META:MALONYL-ACP"
],
"chebi":[
"CHEBI:6662",
"CHEBI:14566",
"CHEBI:17330"
],
"kegg.compound":[
"C01209"
],
"metanetx.chemical":[
"MNXM184"
],
"sabiork":[
"5446"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11492"
]
}
},
{
"id":"egmeACP_c",
"name":"Enoylglutaryl-[acyl-carrier protein] methyl ester",
"compartment":"c",
"charge":-1,
"formula":"C17H27N2O10PRS",
"notes":{
"original_bigg_ids":[
"egmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"egmeACP"
],
"biocyc":[
"META:Enoylglutaryl-ACP-methyl-esters"
],
"kegg.compound":[
"C20374"
],
"metanetx.chemical":[
"MNXM11489"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27020"
]
}
},
{
"id":"grdp_c",
"name":"Geranyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C10H17O7P2",
"notes":{
"original_bigg_ids":[
"grdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"grdp"
],
"biocyc":[
"META:GERANYL-PP"
],
"chebi":[
"CHEBI:17211",
"CHEBI:24223",
"CHEBI:58057",
"CHEBI:42877",
"CHEBI:14299",
"CHEBI:5332"
],
"hmdb":[
"HMDB01285",
"HMDB02239",
"HMDB06506",
"HMDB01560"
],
"inchi_key":[
"GVVPGTZRZFNKDS-JXMROGBWSA-K"
],
"kegg.compound":[
"C00341"
],
"lipidmaps":[
"LMPR0102010001"
],
"metanetx.chemical":[
"MNXM100"
],
"reactome.compound":[
"191409"
],
"sabiork":[
"5050",
"1846"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00283",
"cpd03476"
]
}
},
{
"id":"malcoa_c",
"name":"Malonyl CoA C24H33N7O19P3S",
"compartment":"c",
"charge":-5,
"formula":"C24H33N7O19P3S",
"notes":{
"original_bigg_ids":[
"malcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"malcoa"
],
"biocyc":[
"META:MALONYL-COA"
],
"chebi":[
"CHEBI:25135",
"CHEBI:43979",
"CHEBI:57384",
"CHEBI:14565",
"CHEBI:15531",
"CHEBI:6661"
],
"hmdb":[
"HMDB01175"
],
"inchi_key":[
"LTYOQGRJFJAKNA-DVVLENMVSA-I"
],
"kegg.compound":[
"C00083"
],
"lipidmaps":[
"LMFA07050345",
"LMFA07050031"
],
"metanetx.chemical":[
"MNXM40"
],
"reactome.compound":[
"977323",
"2046066",
"29508"
],
"sabiork":[
"1930"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00070",
"cpd12270"
]
}
},
{
"id":"gtp_c",
"name":"GTP C10H12N5O14P3",
"compartment":"c",
"charge":-4,
"formula":"C10H12N5O14P3",
"notes":{
"original_bigg_ids":[
"gtp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gtp"
],
"biocyc":[
"META:GTP"
],
"chebi":[
"CHEBI:37565",
"CHEBI:15996",
"CHEBI:13342",
"CHEBI:57600",
"CHEBI:5234",
"CHEBI:42934",
"CHEBI:24451"
],
"hmdb":[
"HMDB01273"
],
"inchi_key":[
"XKMLYUALXHKNFT-UUOKFMHZSA-J"
],
"kegg.compound":[
"C00044"
],
"metanetx.chemical":[
"MNXM51"
],
"reactome.compound":[
"113573",
"29438"
],
"sabiork":[
"1282"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00038"
]
}
},
{
"id":"eig3p_c",
"name":"D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H9N2O6P",
"notes":{
"original_bigg_ids":[
"eig3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"eig3p"
],
"biocyc":[
"META:D-ERYTHRO-IMIDAZOLE-GLYCEROL-P"
],
"chebi":[
"CHEBI:12888",
"CHEBI:17805",
"CHEBI:4270",
"CHEBI:58278",
"CHEBI:20923"
],
"hmdb":[
"HMDB12208"
],
"inchi_key":[
"HFYBTHCYPKEDQQ-RITPCOANSA-L"
],
"kegg.compound":[
"C04666"
],
"metanetx.chemical":[
"MNXM1422"
],
"sabiork":[
"7476"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02843"
]
}
},
{
"id":"malcoame_c",
"name":"Malonyl-CoA methyl ester",
"compartment":"c",
"charge":-4,
"formula":"C25H36N7O19P3S",
"notes":{
"original_bigg_ids":[
"malcoame_c"
]
},
"annotation":{
"bigg.metabolite":[
"malcoame"
],
"biocyc":[
"META:CPD-12454"
],
"chebi":[
"CHEBI:71244",
"CHEBI:71242"
],
"inchi_key":[
"CHQAJZULNPRMEN-FZEDXVDRSA-J"
],
"lipidmaps":[
"LMFA07050346"
],
"metanetx.chemical":[
"MNXM97130"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20921"
]
}
},
{
"id":"epmeACP_c",
"name":"Enoylpimeloyl-[acyl-carrier protein] methyl ester",
"compartment":"c",
"charge":-1,
"formula":"C19H31N2O10PRS",
"notes":{
"original_bigg_ids":[
"epmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"epmeACP"
],
"biocyc":[
"META:Enoylpimeloyl-ACP-methyl-esters"
],
"kegg.compound":[
"C20378"
],
"metanetx.chemical":[
"MNXM11490"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27021"
]
}
},
{
"id":"gua_c",
"name":"Guanine",
"compartment":"c",
"formula":"C5H5N5O",
"notes":{
"original_bigg_ids":[
"gua_c"
]
},
"annotation":{
"bigg.metabolite":[
"gua"
],
"biocyc":[
"META:GUANINE"
],
"chebi":[
"CHEBI:16235",
"CHEBI:14371",
"CHEBI:42948",
"CHEBI:14372",
"CHEBI:24443",
"CHEBI:5563"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/b5208daa-3750-4745-b4ed-179fb9d4fcfd"
],
"hmdb":[
"HMDB00132"
],
"inchi_key":[
"UYTPUPDQBNUYGX-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00242"
],
"metanetx.chemical":[
"MNXM259"
],
"reactome.compound":[
"83956"
],
"sabiork":[
"59"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00207"
]
}
},
{
"id":"malt_c",
"name":"Maltose C12H22O11",
"compartment":"c",
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"malt_c"
]
},
"annotation":{
"bigg.metabolite":[
"malt"
],
"biocyc":[
"META:MALTOSE",
"META:ALPHA-MALTOSE"
],
"chebi":[
"CHEBI:6668",
"CHEBI:12340",
"CHEBI:43893",
"CHEBI:22463",
"CHEBI:10300",
"CHEBI:14568",
"CHEBI:18167",
"CHEBI:17306",
"CHEBI:25144"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/943ae27f-7875-4bcd-948d-1551ec9aa1ca"
],
"inchi_key":[
"GUBGYTABKSRVRQ-PICCSMPSSA-N"
],
"kegg.compound":[
"C00897",
"C00208"
],
"kegg.drug":[
"D00044"
],
"kegg.glycan":[
"G00275"
],
"metanetx.chemical":[
"MNXM165"
],
"reactome.compound":[
"188986",
"868706"
],
"sabiork":[
"5881",
"88",
"1669"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00665",
"cpd00179"
]
}
},
{
"id":"h_c",
"name":"H+",
"compartment":"c",
"charge":1,
"formula":"H",
"notes":{
"original_bigg_ids":[
"h_c"
]
},
"annotation":{
"bigg.metabolite":[
"h"
],
"biocyc":[
"META:PROTON"
],
"chebi":[
"CHEBI:5584",
"CHEBI:13357",
"CHEBI:15378",
"CHEBI:10744"
],
"hmdb":[
"HMDB59597"
],
"inchi_key":[
"GPRLSGONYQIRFK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00080"
],
"metanetx.chemical":[
"MNXM1"
],
"reactome.compound":[
"2000349",
"425978",
"74722",
"428040",
"427899",
"428548",
"156540",
"70106",
"425969",
"1132304",
"5668577",
"1470067",
"163953",
"193465",
"113529",
"351626",
"425999",
"194688",
"374900",
"2872447",
"372511"
],
"sabiork":[
"39"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00067"
]
}
},
{
"id":"h2_c",
"name":"Hydrogen",
"compartment":"c",
"formula":"H2",
"notes":{
"original_bigg_ids":[
"h2_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2"
],
"biocyc":[
"META:HYDROGEN-MOLECULE"
],
"chebi":[
"CHEBI:18276",
"CHEBI:29298",
"CHEBI:29299",
"CHEBI:13350",
"CHEBI:29294",
"CHEBI:25363",
"CHEBI:5785"
],
"hmdb":[
"HMDB01362"
],
"inchi_key":[
"UFHFLCQGNIYNRP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00282"
],
"metanetx.chemical":[
"MNXM195"
],
"reactome.compound":[
"113555"
],
"sabiork":[
"5030"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11640"
]
}
},
{
"id":"ethso3_c",
"name":"Ethanesulfonate",
"compartment":"c",
"charge":-1,
"formula":"C2H5O3S",
"notes":{
"original_bigg_ids":[
"ethso3_c"
]
},
"annotation":{
"bigg.metabolite":[
"ethso3"
],
"biocyc":[
"META:CPD-10434"
],
"chebi":[
"CHEBI:61909",
"CHEBI:42465"
],
"inchi_key":[
"CCIVGXIOQKPBKL-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM7343"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11579"
]
}
},
{
"id":"etoh_c",
"name":"Ethanol",
"compartment":"c",
"formula":"C2H6O",
"notes":{
"original_bigg_ids":[
"etoh_c"
]
},
"annotation":{
"bigg.metabolite":[
"etoh"
],
"biocyc":[
"META:ETOH"
],
"chebi":[
"CHEBI:42377",
"CHEBI:23978",
"CHEBI:30880",
"CHEBI:16236",
"CHEBI:52092",
"CHEBI:30878",
"CHEBI:4879",
"CHEBI:44594",
"CHEBI:14222"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a354fd-5003-4b7b-b11b-f54204aea384",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f89efe7c-1a6a-4d21-b99c-e3e1070a8062",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/56e18a05-c059-433a-94f6-0e26c01b010f",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9fb1fbdf-101b-4b82-a596-d2f52c870e4f"
],
"hmdb":[
"HMDB00108"
],
"inchi_key":[
"LFQSCWFLJHTTHZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00469"
],
"kegg.drug":[
"D06542",
"D02798",
"D00068",
"D04855"
],
"metanetx.chemical":[
"MNXM303"
],
"reactome.compound":[
"113748",
"30203"
],
"sabiork":[
"56"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00363"
]
}
},
{
"id":"f6p_c",
"name":"D-Fructose 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"f6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"f6p"
],
"biocyc":[
"META:FRUCTOSE-6P"
],
"chebi":[
"CHEBI:16084",
"CHEBI:12352",
"CHEBI:57634",
"CHEBI:22768",
"CHEBI:10375",
"CHEBI:42378"
],
"hmdb":[
"HMDB03971"
],
"inchi_key":[
"BGWGXPAPYGQALX-ARQDHWQXSA-L"
],
"kegg.compound":[
"C05345"
],
"metanetx.chemical":[
"MNXM89621"
],
"sabiork":[
"25"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19035"
]
}
},
{
"id":"malthp_c",
"name":"Maltoheptaose",
"compartment":"c",
"formula":"C42H72O36",
"notes":{
"original_bigg_ids":[
"malthp_c"
]
},
"annotation":{
"bigg.metabolite":[
"malthp"
],
"biocyc":[
"META:CPD0-1133"
],
"chebi":[
"CHEBI:62010"
],
"hmdb":[
"HMDB13000"
],
"inchi_key":[
"ZHZITDGOAFCURV-VVTKTIMZSA-N"
],
"kegg.glycan":[
"G00689"
],
"metanetx.chemical":[
"MNXM61025"
],
"sabiork":[
"23092"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15494"
]
}
},
{
"id":"fad_c",
"name":"Flavin adenine dinucleotide oxidized",
"compartment":"c",
"charge":-2,
"formula":"C27H31N9O15P2",
"notes":{
"original_bigg_ids":[
"fad_c"
]
},
"annotation":{
"bigg.metabolite":[
"fad"
],
"biocyc":[
"META:FAD"
],
"chebi":[
"CHEBI:16238",
"CHEBI:42388",
"CHEBI:21125",
"CHEBI:57692",
"CHEBI:13315",
"CHEBI:4956"
],
"hmdb":[
"HMDB01248"
],
"inchi_key":[
"IMGVNJNCCGXBHD-UYBVJOGSSA-K"
],
"kegg.compound":[
"C00016"
],
"kegg.drug":[
"D00005"
],
"metanetx.chemical":[
"MNXM33"
],
"reactome.compound":[
"113596",
"29386",
"113597"
],
"sabiork":[
"1270"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00015"
]
}
},
{
"id":"fadh2_c",
"name":"Flavin adenine dinucleotide reduced",
"compartment":"c",
"charge":-2,
"formula":"C27H33N9O15P2",
"notes":{
"original_bigg_ids":[
"fadh2_c"
]
},
"annotation":{
"bigg.metabolite":[
"fadh2"
],
"biocyc":[
"META:FADH2"
],
"chebi":[
"CHEBI:13316",
"CHEBI:42427",
"CHEBI:4957",
"CHEBI:17877",
"CHEBI:58307",
"CHEBI:21126"
],
"hmdb":[
"HMDB06358",
"HMDB06252",
"HMDB01197"
],
"inchi_key":[
"YPZRHBJKEMOYQH-UYBVJOGSSA-L"
],
"kegg.compound":[
"C01352"
],
"metanetx.chemical":[
"MNXM38"
],
"reactome.compound":[
"31649",
"164934"
],
"sabiork":[
"2274"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00982"
]
}
},
{
"id":"h2mb4p_c",
"name":"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C5H9O8P2",
"notes":{
"original_bigg_ids":[
"h2mb4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2mb4p"
],
"biocyc":[
"META:HYDROXY-METHYL-BUTENYL-DIP"
],
"chebi":[
"CHEBI:10952",
"CHEBI:128753",
"CHEBI:15664",
"CHEBI:632"
],
"inchi_key":[
"MDSIZRKJVDMQOQ-GORDUTHDSA-K"
],
"kegg.compound":[
"C11811"
],
"lipidmaps":[
"LMPR01010009"
],
"metanetx.chemical":[
"MNXM606"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08615",
"cpd29213"
]
}
},
{
"id":"h2o_c",
"name":"H2O H2O",
"compartment":"c",
"formula":"H2O",
"notes":{
"original_bigg_ids":[
"h2o_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2o"
],
"biocyc":[
"META:CPD-15815",
"META:OXONIUM",
"META:HYDROXYL-GROUP",
"META:WATER",
"META:OH"
],
"chebi":[
"CHEBI:13352",
"CHEBI:30490",
"CHEBI:43228",
"CHEBI:33813",
"CHEBI:44292",
"CHEBI:44641",
"CHEBI:27313",
"CHEBI:42043",
"CHEBI:44819",
"CHEBI:29356",
"CHEBI:5594",
"CHEBI:10743",
"CHEBI:15377",
"CHEBI:42857",
"CHEBI:13365",
"CHEBI:29412",
"CHEBI:16234",
"CHEBI:13419",
"CHEBI:5585",
"CHEBI:44701"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/799908db-b8c9-4982-86cb-1f225e2ad08c",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e7f34a8e-cded-4793-b6d5-792335b38636",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/969d0227-3069-4e44-9525-7ae7bad84170"
],
"hmdb":[
"HMDB02111",
"HMDB01039"
],
"inchi_key":[
"XLYOFNOQVPJJNP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00001",
"C01328"
],
"kegg.drug":[
"D00001",
"D06322"
],
"metanetx.chemical":[
"MNXM2"
],
"reactome.compound":[
"113521",
"141343",
"2022884",
"5278291",
"29356",
"189422",
"5668574",
"5693747",
"109276",
"113519",
"1605715",
"8851517",
"113518",
"351603"
],
"sabiork":[
"40"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27222",
"cpd00001",
"cpd15275"
]
}
},
{
"id":"malthx_c",
"name":"Maltohexaose",
"compartment":"c",
"formula":"C36H62O31",
"notes":{
"original_bigg_ids":[
"malthx_c"
]
},
"annotation":{
"bigg.metabolite":[
"malthx"
],
"biocyc":[
"META:MALTOHEXAOSE"
],
"chebi":[
"CHEBI:61953",
"CHEBI:6667",
"CHEBI:27445",
"CHEBI:25141"
],
"hmdb":[
"HMDB12253"
],
"inchi_key":[
"OCIBBXPLUVYKCH-QXVNYKTNSA-N"
],
"kegg.compound":[
"C01936"
],
"kegg.glycan":[
"G00755"
],
"metanetx.chemical":[
"MNXM1317"
],
"sabiork":[
"5897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01329"
]
}
},
{
"id":"h2o2_c",
"name":"Hydrogen peroxide",
"compartment":"c",
"formula":"H2O2",
"notes":{
"original_bigg_ids":[
"h2o2_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2o2"
],
"biocyc":[
"META:HYDROGEN-PEROXIDE"
],
"chebi":[
"CHEBI:29192",
"CHEBI:44785",
"CHEBI:13355",
"CHEBI:13354",
"CHEBI:29370",
"CHEBI:24637",
"CHEBI:44812",
"CHEBI:5586",
"CHEBI:25940",
"CHEBI:44782",
"CHEBI:16240"
],
"hmdb":[
"HMDB03125",
"HMDB06491"
],
"inchi_key":[
"MHAJPDPJQMAIIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00027"
],
"kegg.drug":[
"D00008"
],
"metanetx.chemical":[
"MNXM22"
],
"reactome.compound":[
"1614617",
"29408",
"351629",
"189481",
"113575"
],
"sabiork":[
"1909"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00025"
]
}
},
{
"id":"fald_c",
"name":"Formaldehyde",
"compartment":"c",
"formula":"CH2O",
"notes":{
"original_bigg_ids":[
"fald_c"
]
},
"annotation":{
"bigg.metabolite":[
"fald"
],
"biocyc":[
"META:FORMALDEHYDE",
"META:CARBONYL-GROUP"
],
"chebi":[
"CHEBI:16842",
"CHEBI:337763",
"CHEBI:24077",
"CHEBI:14274",
"CHEBI:5142"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/71fc9221-3497-43e5-963c-ecd5390cc239",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/4103a49c-b6c5-4db6-aef3-65b68fd2f6da",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8ee6f55a-4488-4606-b65f-5aead102ccfc"
],
"hmdb":[
"HMDB01426"
],
"inchi_key":[
"WSFSSNUMVMOOMR-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00067"
],
"kegg.drug":[
"D00017"
],
"metanetx.chemical":[
"MNXM56"
],
"reactome.compound":[
"143501",
"29478",
"879250",
"6797920"
],
"sabiork":[
"1928"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00055"
]
}
},
{
"id":"maltpt_c",
"name":"Maltopentaose",
"compartment":"c",
"formula":"C30H52O26",
"notes":{
"original_bigg_ids":[
"maltpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"maltpt"
],
"biocyc":[
"META:MALTOPENTAOSE"
],
"chebi":[
"CHEBI:61952",
"CHEBI:62006"
],
"hmdb":[
"HMDB12254"
],
"inchi_key":[
"FTNIPWXXIGNQQF-DWTFCAFKSA-N"
],
"kegg.glycan":[
"G00343"
],
"metanetx.chemical":[
"MNXM1538"
],
"sabiork":[
"18865"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15495"
]
}
},
{
"id":"fdp_c",
"name":"D-Fructose 1,6-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C6H10O12P2",
"notes":{
"original_bigg_ids":[
"fdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"fdp"
],
"chebi":[
"CHEBI:37736",
"CHEBI:49299"
],
"inchi_key":[
"RNBGYGVWRKECFJ-VRPWFDPXSA-J"
],
"kegg.compound":[
"C00354"
],
"metanetx.chemical":[
"MNXM417"
],
"sabiork":[
"1465"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00290"
]
}
},
{
"id":"h2s_c",
"name":"Hydrogen sulfide",
"compartment":"c",
"formula":"H2S",
"notes":{
"original_bigg_ids":[
"h2s_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2s"
],
"biocyc":[
"META:CPD-846",
"META:CPD-7046",
"META:HS"
],
"chebi":[
"CHEBI:14414",
"CHEBI:43058",
"CHEBI:5787",
"CHEBI:13356",
"CHEBI:30488",
"CHEBI:24639",
"CHEBI:29919",
"CHEBI:16136",
"CHEBI:15138",
"CHEBI:45489"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6fca0a43-b0f0-41dd-a454-c7880342d6be",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/83aab241-d065-45ef-a799-98fdad5bcf04",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/0b237b94-a6df-4792-8866-246b2230eef0",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6715c2d9-35cb-48df-aa0b-611368e2fb0a"
],
"hmdb":[
"HMDB00598",
"HMDB03276"
],
"inchi_key":[
"RWSOTUBLDIXVET-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00283"
],
"metanetx.chemical":[
"MNXM89582"
],
"reactome.compound":[
"1663154",
"1614532",
"1655881"
],
"sabiork":[
"2007"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd24697",
"cpd00239"
]
}
},
{
"id":"maltpttre_c",
"name":"Maltopentaosyltrehalose",
"compartment":"c",
"formula":"C42H72O36",
"notes":{
"original_bigg_ids":[
"maltpttre_c"
]
},
"annotation":{
"bigg.metabolite":[
"maltpttre"
],
"metanetx.chemical":[
"MNXM148335"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hcit_c",
"name":"2 Hydroxybutane 1 2 4 tricarboxylate C7H7O7",
"compartment":"c",
"charge":-3,
"formula":"C7H7O7",
"notes":{
"original_bigg_ids":[
"hcit_c"
]
},
"annotation":{
"bigg.metabolite":[
"hcit"
],
"metanetx.chemical":[
"MNXM5782"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fdxo_42_c",
"name":"Ferredoxin (oxidized form 4:2)",
"compartment":"c",
"formula":"Fe8S8X",
"notes":{
"original_bigg_ids":[
"fdxo_42_c"
]
},
"annotation":{
"bigg.metabolite":[
"fdxo_42"
],
"metanetx.chemical":[
"MNXM145541"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fdxr_42_c",
"name":"Ferredoxin (reduced form 4:2)",
"compartment":"c",
"charge":-2,
"formula":"Fe8S8X",
"notes":{
"original_bigg_ids":[
"fdxr_42_c"
]
},
"annotation":{
"bigg.metabolite":[
"fdxr_42"
],
"metanetx.chemical":[
"MNXM145542"
],
"sbo":"SBO:0000247"
}
},
{
"id":"malttr_c",
"name":"Maltotriose C18H32O16",
"compartment":"c",
"formula":"C18H32O16",
"notes":{
"original_bigg_ids":[
"malttr_c"
]
},
"annotation":{
"bigg.metabolite":[
"malttr"
],
"biocyc":[
"META:MALTOTRIOSE"
],
"chebi":[
"CHEBI:61993",
"CHEBI:6672",
"CHEBI:25146",
"CHEBI:43937",
"CHEBI:27931"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7d7cf31a-30a5-4368-8802-9269424379b6"
],
"hmdb":[
"HMDB01262"
],
"inchi_key":[
"FYGDTMLNYKFZSV-PXXRMHSHSA-N"
],
"kegg.compound":[
"C01835"
],
"metanetx.chemical":[
"MNXM468"
],
"reactome.compound":[
"191103"
],
"sabiork":[
"5832"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01262"
]
}
},
{
"id":"fe2_c",
"name":"Fe2+ mitochondria",
"compartment":"c",
"charge":2,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe2_c"
]
},
"annotation":{
"bigg.metabolite":[
"fe2"
],
"biocyc":[
"META:FE+2"
],
"chebi":[
"CHEBI:29033",
"CHEBI:49599",
"CHEBI:13321",
"CHEBI:21129",
"CHEBI:13319",
"CHEBI:24876",
"CHEBI:34754"
],
"hmdb":[
"HMDB00692"
],
"inchi_key":[
"CWYNVVGOOAEACU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14818"
],
"metanetx.chemical":[
"MNXM111"
],
"sabiork":[
"1275"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10515"
]
}
},
{
"id":"hco3_c",
"name":"Bicarbonate",
"compartment":"c",
"charge":-1,
"formula":"CHO3",
"notes":{
"original_bigg_ids":[
"hco3_c"
]
},
"annotation":{
"bigg.metabolite":[
"hco3"
],
"biocyc":[
"META:CO3",
"META:H2CO3",
"META:HCO3"
],
"chebi":[
"CHEBI:13363",
"CHEBI:41605",
"CHEBI:13351",
"CHEBI:29201",
"CHEBI:22863",
"CHEBI:3401",
"CHEBI:23017",
"CHEBI:23744",
"CHEBI:40961",
"CHEBI:41609",
"CHEBI:17544",
"CHEBI:28976",
"CHEBI:5589"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/c78c72b7-2f2b-4dde-9f3d-80bb61a1da3e",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/34be09c7-8615-4ee1-806a-6a93ae28d922"
],
"hmdb":[
"HMDB03538",
"HMDB00595",
"HMDB31453"
],
"inchi_key":[
"BVKZGUZCCUSVTD-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01353",
"C00288"
],
"metanetx.chemical":[
"MNXM60"
],
"reactome.compound":[
"29896",
"425425",
"111627"
],
"sabiork":[
"1916",
"2275"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00242"
]
}
},
{
"id":"malttre_c",
"name":"Maltosyltrehalose",
"compartment":"c",
"formula":"C24H42O21",
"notes":{
"original_bigg_ids":[
"malttre_c"
]
},
"annotation":{
"bigg.metabolite":[
"malttre"
],
"metanetx.chemical":[
"MNXM148336"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hcys__L_c",
"name":"L-Homocysteine",
"compartment":"c",
"formula":"C4H9NO2S",
"notes":{
"original_bigg_ids":[
"hcys_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"hcys__L"
],
"biocyc":[
"META:HOMO-CYS"
],
"chebi":[
"CHEBI:43117",
"CHEBI:21329",
"CHEBI:58199",
"CHEBI:66952",
"CHEBI:6245",
"CHEBI:17588",
"CHEBI:17230",
"CHEBI:13122",
"CHEBI:14408",
"CHEBI:58065",
"CHEBI:5751",
"CHEBI:63072"
],
"hmdb":[
"HMDB00165",
"HMDB00742"
],
"inchi_key":[
"FFFHZYDWPBMWHY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C05330",
"C00155"
],
"metanetx.chemical":[
"MNXM123"
],
"reactome.compound":[
"174369"
],
"sabiork":[
"1950",
"2768"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19034",
"cpd00135"
]
}
},
{
"id":"fe3_c",
"name":"Iron (Fe3+)",
"compartment":"c",
"charge":3,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe3_c"
]
},
"annotation":{
"bigg.metabolite":[
"fe3"
],
"biocyc":[
"META:FE+3"
],
"chebi":[
"CHEBI:49595",
"CHEBI:13320",
"CHEBI:24877",
"CHEBI:21130",
"CHEBI:29034",
"CHEBI:34755"
],
"hmdb":[
"HMDB12943"
],
"inchi_key":[
"VTLYFUHAOXGGBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14819"
],
"metanetx.chemical":[
"MNXM196"
],
"reactome.compound":[
"917966",
"111736",
"917943",
"912519",
"912516"
],
"sabiork":[
"1361"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10516"
]
}
},
{
"id":"malttrtre_c",
"name":"Maltotriosyltrehalose",
"compartment":"c",
"formula":"C30H52O26",
"notes":{
"original_bigg_ids":[
"malttrtre_c"
]
},
"annotation":{
"bigg.metabolite":[
"malttrtre"
],
"metanetx.chemical":[
"MNXM148338"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fgam_c",
"name":"N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide",
"compartment":"c",
"charge":-2,
"formula":"C8H13N2O9P",
"notes":{
"original_bigg_ids":[
"fgam_c"
]
},
"annotation":{
"bigg.metabolite":[
"fgam"
],
"biocyc":[
"META:5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE"
],
"chebi":[
"CHEBI:12635",
"CHEBI:42411",
"CHEBI:58426",
"CHEBI:18272",
"CHEBI:20498",
"CHEBI:1982"
],
"hmdb":[
"HMDB01308",
"HMDB06476"
],
"inchi_key":[
"VDXLUNDMVKSKHO-ZRTZXPPTSA-L"
],
"kegg.compound":[
"C04376"
],
"metanetx.chemical":[
"MNXM453"
],
"reactome.compound":[
"111354"
],
"sabiork":[
"1889"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02678"
]
}
},
{
"id":"ficytC_c",
"name":"Ferricytochrome c",
"compartment":"c",
"charge":3,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"ficytC_c"
]
},
"annotation":{
"bigg.metabolite":[
"ficytC"
],
"biocyc":[
"META:Oxidized-cytochromes-c553"
],
"chebi":[
"CHEBI:5028",
"CHEBI:14235",
"CHEBI:14245",
"CHEBI:16951",
"CHEBI:15991",
"CHEBI:5026",
"CHEBI:15719",
"CHEBI:5021",
"CHEBI:14239",
"CHEBI:14240"
],
"kegg.compound":[
"C00125",
"C00923",
"C01070"
],
"metanetx.chemical":[
"MNXM5749"
],
"sabiork":[
"1937"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00109",
"cpd19010",
"cpd27756"
]
}
},
{
"id":"hdca_c",
"name":"Hexadecanoate (n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C16H31O2",
"notes":{
"original_bigg_ids":[
"hdca_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdca"
],
"biocyc":[
"META:PALMITATE"
],
"chebi":[
"CHEBI:7896",
"CHEBI:24540",
"CHEBI:231736",
"CHEBI:15756",
"CHEBI:44952",
"CHEBI:233028",
"CHEBI:24542",
"CHEBI:14730",
"CHEBI:35978",
"CHEBI:24541",
"CHEBI:24550",
"CHEBI:29889"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc7314a1-8e9a-410f-be4f-f7d8bf32b1cb"
],
"hmdb":[
"HMDB60083",
"HMDB00220"
],
"inchi_key":[
"IPCSVZSSVZVIGE-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00249"
],
"kegg.drug":[
"D05341"
],
"lipidmaps":[
"LMFA01010046",
"LMFA01010001"
],
"metanetx.chemical":[
"MNXM108"
],
"reactome.compound":[
"2453691",
"3632881",
"76168",
"5690516",
"390435",
"426576"
],
"sabiork":[
"1990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00214"
],
"slm":[
"000000510"
]
}
},
{
"id":"maltttr_c",
"name":"Maltotetraose",
"compartment":"c",
"formula":"C24H42O21",
"notes":{
"original_bigg_ids":[
"maltttr_c"
]
},
"annotation":{
"bigg.metabolite":[
"maltttr"
],
"biocyc":[
"META:MALTOTETRAOSE",
"META:CPD0-2595",
"META:CPD-13205"
],
"chebi":[
"CHEBI:6671",
"CHEBI:61988",
"CHEBI:28460",
"CHEBI:62974",
"CHEBI:25145",
"CHEBI:44299"
],
"hmdb":[
"HMDB01296"
],
"inchi_key":[
"LUEWUZLMQUOBSB-ZLBHSGTGSA-N"
],
"kegg.compound":[
"C02013",
"C02052"
],
"kegg.glycan":[
"G00459"
],
"metanetx.chemical":[
"MNXM5663"
],
"sabiork":[
"5941",
"5966"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01376",
"cpd01399"
]
}
},
{
"id":"hdcap_c",
"name":"Hexadecanoyl-phosphate (n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C16H32O5P",
"notes":{
"original_bigg_ids":[
"hdcap_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdcap"
],
"metanetx.chemical":[
"MNXM147481"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ficytb_c",
"name":"Ferricytochrome b",
"compartment":"c",
"charge":3,
"formula":"C34H32FeN4O4",
"notes":{
"original_bigg_ids":[
"ficytb_c"
]
},
"annotation":{
"bigg.metabolite":[
"ficytb"
],
"chebi":[
"CHEBI:5022"
],
"kegg.compound":[
"C06260"
],
"metanetx.chemical":[
"MNXM11551"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12852"
]
}
},
{
"id":"maltttrtre_c",
"name":"Maltotetraosyltrehalose",
"compartment":"c",
"formula":"C36H62O31",
"notes":{
"original_bigg_ids":[
"maltttrtre_c"
]
},
"annotation":{
"bigg.metabolite":[
"maltttrtre"
],
"metanetx.chemical":[
"MNXM148337"
],
"sbo":"SBO:0000247"
}
},
{
"id":"flxr_c",
"name":"Flavodoxin reduced",
"compartment":"c",
"charge":-1,
"formula":"XH",
"notes":{
"original_bigg_ids":[
"flxr_c"
]
},
"annotation":{
"bigg.metabolite":[
"flxr"
],
"metanetx.chemical":[
"MNXM6271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15465"
]
}
},
{
"id":"hdcea_c",
"name":"Hexadecenoate (n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C16H29O2",
"notes":{
"original_bigg_ids":[
"hdcea_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdcea"
],
"metanetx.chemical":[
"MNXM950"
],
"sbo":"SBO:0000247"
}
},
{
"id":"man_c",
"name":"D-Mannose",
"compartment":"c",
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"man_c"
]
},
"annotation":{
"bigg.metabolite":[
"man"
],
"biocyc":[
"META:D-mannopyranose"
],
"chebi":[
"CHEBI:4208",
"CHEBI:37684",
"CHEBI:14575",
"CHEBI:16024",
"CHEBI:21057",
"CHEBI:33930",
"CHEBI:12999"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c5f931e8-e7f7-4b73-bed6-48662796fe18"
],
"hmdb":[
"HMDB00169"
],
"inchi_key":[
"WQZGKKKJIJFFOK-QTVWNMPRSA-N"
],
"kegg.compound":[
"C00159"
],
"metanetx.chemical":[
"MNXM182"
],
"reactome.compound":[
"964752",
"6799594",
"429579"
],
"sabiork":[
"1656"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00138",
"cpd27437"
]
}
},
{
"id":"flxso_c",
"name":"Flavodoxin semi oxidized",
"compartment":"c",
"formula":"XH",
"notes":{
"original_bigg_ids":[
"flxso_c"
]
},
"annotation":{
"bigg.metabolite":[
"flxso"
],
"metanetx.chemical":[
"MNXM145809"
],
"sbo":"SBO:0000247"
}
},
{
"id":"man1p_c",
"name":"D-Mannose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"man1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"man1p"
],
"biocyc":[
"META:MANNOSE-1P"
],
"chebi":[
"CHEBI:35374",
"CHEBI:22404",
"CHEBI:4210",
"CHEBI:43854",
"CHEBI:12327",
"CHEBI:18205",
"CHEBI:58409",
"CHEBI:10261",
"CHEBI:21058"
],
"hmdb":[
"HMDB01436",
"HMDB06330"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-RWOPYEJCSA-L"
],
"kegg.compound":[
"C00636"
],
"metanetx.chemical":[
"MNXM721"
],
"reactome.compound":[
"532531"
],
"sabiork":[
"1342"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00485"
]
}
},
{
"id":"fmettrna_c",
"name":"N-Formylmethionyl-tRNA",
"compartment":"c",
"formula":"C6H9NO2SR",
"notes":{
"original_bigg_ids":[
"fmettrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"fmettrna"
],
"chebi":[
"CHEBI:17119",
"CHEBI:12510",
"CHEBI:12597",
"CHEBI:7283"
],
"kegg.compound":[
"C03294"
],
"metanetx.chemical":[
"MNXM95381"
],
"reactome.compound":[
"5368270",
"5621506"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12285"
]
}
},
{
"id":"hdceap_c",
"name":"Hexadecanoyl-phosphate (n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C16H30O5P",
"notes":{
"original_bigg_ids":[
"hdceap_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdceap"
],
"metanetx.chemical":[
"MNXM147482"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fmn_c",
"name":"FMN C17H19N4O9P",
"compartment":"c",
"charge":-2,
"formula":"C17H19N4O9P",
"notes":{
"original_bigg_ids":[
"fmn_c"
]
},
"annotation":{
"bigg.metabolite":[
"fmn"
],
"biocyc":[
"META:FMN"
],
"chebi":[
"CHEBI:58210",
"CHEBI:4960",
"CHEBI:42587",
"CHEBI:17621",
"CHEBI:21127",
"CHEBI:13317"
],
"hmdb":[
"HMDB01520"
],
"inchi_key":[
"ANKZYBDXHMZBDK-SCRDCRAPSA-K"
],
"kegg.compound":[
"C00061"
],
"metanetx.chemical":[
"MNXM119"
],
"reactome.compound":[
"73524"
],
"sabiork":[
"1673"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00050"
]
}
},
{
"id":"man6p_c",
"name":"D-Mannose 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"man6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"man6p"
],
"biocyc":[
"META:Mannose-6-phosphate",
"META:CPD-15980",
"META:CPD-15979"
],
"chebi":[
"CHEBI:58735",
"CHEBI:48042",
"CHEBI:48066",
"CHEBI:4211",
"CHEBI:13000",
"CHEBI:17369"
],
"inchi_key":[
"NBSCHQHZLSJFNQ-QTVWNMPRSA-L"
],
"kegg.compound":[
"C00275"
],
"metanetx.chemical":[
"MNXM427"
],
"reactome.compound":[
"532562"
],
"sabiork":[
"1323",
"24709"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00235"
]
}
},
{
"id":"focytC_c",
"name":"Ferrocytochrome C",
"compartment":"c",
"charge":2,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"focytC_c"
]
},
"annotation":{
"bigg.metabolite":[
"focytC"
],
"biocyc":[
"META:Cytochromes-C-Reduced",
"META:Reduced-cytochromes-c553"
],
"chebi":[
"CHEBI:15856",
"CHEBI:5038",
"CHEBI:14256",
"CHEBI:16928",
"CHEBI:8789",
"CHEBI:5040",
"CHEBI:14252",
"CHEBI:14253"
],
"kegg.compound":[
"C00126",
"C01071"
],
"metanetx.chemical":[
"MNXM746"
],
"sabiork":[
"2881",
"1938"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19011",
"cpd28081",
"cpd00110"
]
}
},
{
"id":"hdcoa_c",
"name":"Hexadecenoyl-CoA (n-C16:1CoA)",
"compartment":"c",
"charge":-4,
"formula":"C37H60N7O17P3S",
"notes":{
"original_bigg_ids":[
"hdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdcoa"
],
"metanetx.chemical":[
"MNXM90167"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hdd2coa_c",
"name":"Trans-Hexadec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C37H60N7O17P3S",
"notes":{
"original_bigg_ids":[
"hdd2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdd2coa"
],
"biocyc":[
"META:CPD0-2117"
],
"chebi":[
"CHEBI:27047",
"CHEBI:10728",
"CHEBI:61526",
"CHEBI:28935",
"CHEBI:52381"
],
"hmdb":[
"HMDB06533",
"HMDB03945"
],
"inchi_key":[
"JUPAQFRKPHPXLD-MSHHSVQMSA-J"
],
"kegg.compound":[
"C05272"
],
"lipidmaps":[
"LMFA07050020",
"LMFA07050144"
],
"metanetx.chemical":[
"MNXM581"
],
"reactome.compound":[
"77284"
],
"sabiork":[
"2749"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03126"
],
"slm":[
"000000444"
]
}
},
{
"id":"meoh_c",
"name":"Methanol",
"compartment":"c",
"formula":"CH4O1",
"notes":{
"original_bigg_ids":[
"meoh_c"
]
},
"annotation":{
"bigg.metabolite":[
"meoh"
],
"biocyc":[
"META:ALCOHOL-GROUP",
"META:METOH"
],
"chebi":[
"CHEBI:52090",
"CHEBI:25227",
"CHEBI:44080",
"CHEBI:17790",
"CHEBI:44553",
"CHEBI:14588",
"CHEBI:6816"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2c247069-759d-4108-ba1b-b1c81678bab7",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b5522308-bb5c-41bb-a11a-e9b9ae61da85"
],
"hmdb":[
"HMDB01875"
],
"inchi_key":[
"OKKJLVBELUTLKV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00132"
],
"kegg.drug":[
"D02309"
],
"metanetx.chemical":[
"MNXM157"
],
"reactome.compound":[
"5693711",
"5359061"
],
"sabiork":[
"55"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00116"
]
}
},
{
"id":"focytc_c",
"name":"Ferrocytochrome c C42H53FeN8O6S2",
"compartment":"c",
"charge":2,
"formula":"C34H32FeN4O4",
"notes":{
"original_bigg_ids":[
"focytb_c"
]
},
"annotation":{
"bigg.metabolite":[
"focytc"
],
"chebi":[
"CHEBI:5033",
"CHEBI:14248",
"CHEBI:15983"
],
"hmdb":[
"HMDB12947"
],
"kegg.compound":[
"C00924"
],
"metanetx.chemical":[
"MNXM5750"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00686"
]
}
},
{
"id":"met__L_c",
"name":"L-Methionine",
"compartment":"c",
"formula":"C5H11NO2S",
"notes":{
"original_bigg_ids":[
"met_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"met__L"
],
"biocyc":[
"META:MET"
],
"chebi":[
"CHEBI:32644",
"CHEBI:32631",
"CHEBI:21360",
"CHEBI:6271",
"CHEBI:14590",
"CHEBI:16811",
"CHEBI:25229",
"CHEBI:32632",
"CHEBI:6829",
"CHEBI:57844",
"CHEBI:32646",
"CHEBI:64558",
"CHEBI:16643",
"CHEBI:13141",
"CHEBI:43990"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/44a61812-39ff-48f9-bf09-8398e8723d5e"
],
"hmdb":[
"HMDB00696",
"HMDB33951"
],
"inchi_key":[
"FFEARJCKVFRZRR-BYPYZUCNSA-N"
],
"kegg.compound":[
"C01733",
"C00073"
],
"kegg.drug":[
"D04984",
"D04983",
"D00019"
],
"metanetx.chemical":[
"MNXM61"
],
"reactome.compound":[
"379705",
"1130765",
"174390"
],
"sabiork":[
"77",
"2315"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00060",
"cpd30746"
]
}
},
{
"id":"hdeACP_c",
"name":"Cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C27H49N2O8PRS",
"notes":{
"original_bigg_ids":[
"hdeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdeACP"
],
"metanetx.chemical":[
"MNXM89949"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hemeO_c",
"name":"Heme O C49H56FeN4O5",
"compartment":"c",
"charge":-2,
"formula":"C49H56FeN4O5",
"notes":{
"original_bigg_ids":[
"hemeO_c"
]
},
"annotation":{
"bigg.metabolite":[
"hemeO"
],
"biocyc":[
"META:CPD-17063",
"META:HEME_O"
],
"chebi":[
"CHEBI:24480",
"CHEBI:61719",
"CHEBI:36301",
"CHEBI:60530"
],
"hmdb":[
"HMDB01162"
],
"inchi_key":[
"FISPASSVCDRERW-ARQJTVBPSA-J"
],
"kegg.compound":[
"C15672"
],
"metanetx.chemical":[
"MNXM1278"
],
"reactome.compound":[
"2995328"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11313"
]
}
},
{
"id":"methf_c",
"name":"5,10-Methenyltetrahydrofolate",
"compartment":"c",
"charge":-1,
"formula":"C20H20N7O6",
"notes":{
"original_bigg_ids":[
"methf_c"
]
},
"annotation":{
"bigg.metabolite":[
"methf"
],
"biocyc":[
"META:5-10-METHENYL-THF"
],
"chebi":[
"CHEBI:12069",
"CHEBI:15638",
"CHEBI:12068",
"CHEBI:57455",
"CHEBI:1987"
],
"hmdb":[
"HMDB01354",
"HMDB62623"
],
"inchi_key":[
"MEANFMOQMXYMCT-OLZOCXBDSA-M"
],
"kegg.compound":[
"C00445"
],
"metanetx.chemical":[
"MNXM511"
],
"reactome.compound":[
"6801458"
],
"sabiork":[
"1338"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00347"
]
}
},
{
"id":"hexACP_c",
"name":"Hexanoyl-ACP (n-C6:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C17H31N2O8PRS",
"notes":{
"original_bigg_ids":[
"hexACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"hexACP"
],
"metanetx.chemical":[
"MNXM90722"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fol_c",
"name":"Folate",
"compartment":"c",
"charge":-1,
"formula":"C19H18N7O6",
"notes":{
"original_bigg_ids":[
"fol_c"
]
},
"annotation":{
"bigg.metabolite":[
"fol"
],
"biocyc":[
"META:CPD-12826"
],
"chebi":[
"CHEBI:62501",
"CHEBI:27470",
"CHEBI:5140",
"CHEBI:24075",
"CHEBI:42610",
"CHEBI:569217"
],
"hmdb":[
"HMDB00121"
],
"inchi_key":[
"OVBPIULPVIDEAO-LBPRGKRZSA-L"
],
"kegg.compound":[
"C00504"
],
"kegg.drug":[
"D00070"
],
"metanetx.chemical":[
"MNXM617"
],
"reactome.compound":[
"197965",
"200716"
],
"sabiork":[
"2063"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00393"
]
}
},
{
"id":"metsox_R__L_c",
"name":"L-methionine-R-sulfoxide",
"compartment":"c",
"formula":"C5H11NO3S",
"notes":{
"original_bigg_ids":[
"metsox_R_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"metsox_R__L"
],
"biocyc":[
"META:CPD-8990"
],
"chebi":[
"CHEBI:49032",
"CHEBI:58773"
],
"inchi_key":[
"QEFRNWWLZKMPFJ-ZXPFJRLXSA-N"
],
"kegg.compound":[
"C15998"
],
"metanetx.chemical":[
"MNXM2245"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14720",
"cpd15497"
]
}
},
{
"id":"for_c",
"name":"Formate",
"compartment":"c",
"charge":-1,
"formula":"CH1O2",
"notes":{
"original_bigg_ids":[
"for_c"
]
},
"annotation":{
"bigg.metabolite":[
"for"
],
"biocyc":[
"META:CPD1G-1532",
"META:CPD1G-1535",
"META:FORMATE",
"META:CPD-9845",
"META:CPD1G-1534",
"META:CARBOXYL-GROUP",
"META:CPD1G-1533"
],
"chebi":[
"CHEBI:24081",
"CHEBI:30751",
"CHEBI:15740",
"CHEBI:5145",
"CHEBI:42460",
"CHEBI:14276",
"CHEBI:24082"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a9d20ae-b6ec-40a9-93ca-1de20597b1ed",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09c1ad08-016e-4477-8840-b97a031eae23",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/bf16ab32-cb3c-4427-a65a-089ab754823e",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/34fe3cd9-9b0b-46b0-a1c5-8a66509f1919",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1d077cf2-3f9f-4163-aa49-0fca1b2b3ab3"
],
"hmdb":[
"HMDB00142"
],
"inchi_key":[
"BDAGIHXWWSANSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00058"
],
"metanetx.chemical":[
"MNXM39"
],
"reactome.compound":[
"29460",
"194712",
"389585",
"6801451"
],
"sabiork":[
"1285"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00047",
"cpd22511"
]
}
},
{
"id":"hg0_c",
"name":"Mercury (uncharged)",
"compartment":"c",
"formula":"Hg",
"notes":{
"original_bigg_ids":[
"hg0_c"
]
},
"annotation":{
"bigg.metabolite":[
"hg0"
],
"metanetx.chemical":[
"MNXM149106"
],
"sbo":"SBO:0000247"
}
},
{
"id":"metsox_S__L_c",
"name":"L-Methionine Sulfoxide",
"compartment":"c",
"formula":"C5H11NO3S",
"notes":{
"original_bigg_ids":[
"metsox_S_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"metsox_S__L"
],
"biocyc":[
"META:L-Methionine-sulfoxides"
],
"chebi":[
"CHEBI:6272",
"CHEBI:17016",
"CHEBI:13142",
"CHEBI:21361"
],
"inchi_key":[
"QEFRNWWLZKMPFJ-YGVKFDHGSA-N"
],
"kegg.compound":[
"C02989"
],
"metanetx.chemical":[
"MNXM2246"
],
"reactome.compound":[
"5676943"
],
"sabiork":[
"2611"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01914",
"cpd15498",
"cpd29319"
]
}
},
{
"id":"hg2_c",
"name":"Mercury  charged 2  Hg",
"compartment":"c",
"charge":2,
"formula":"Hg",
"notes":{
"original_bigg_ids":[
"hg2_c"
]
},
"annotation":{
"bigg.metabolite":[
"hg2"
],
"biocyc":[
"META:HG+2"
],
"chebi":[
"CHEBI:25200",
"CHEBI:13370",
"CHEBI:25199",
"CHEBI:16793",
"CHEBI:49640",
"CHEBI:5714"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/79a26c21-7769-4377-9880-413b45e89afe"
],
"hmdb":[
"HMDB03625"
],
"inchi_key":[
"BQPIGGFYSBELGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00703"
],
"metanetx.chemical":[
"MNXM1562"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00531"
]
}
},
{
"id":"fpram_c",
"name":"2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine",
"compartment":"c",
"charge":-1,
"formula":"C8H15N3O8P",
"notes":{
"original_bigg_ids":[
"fpram_c"
]
},
"annotation":{
"bigg.metabolite":[
"fpram"
],
"chebi":[
"CHEBI:18413",
"CHEBI:58478",
"CHEBI:971",
"CHEBI:11474"
],
"hmdb":[
"HMDB06211"
],
"inchi_key":[
"PMCOGCVKOAOZQM-ZRTZXPPTSA-M"
],
"metanetx.chemical":[
"MNXM479745"
],
"reactome.compound":[
"111369"
],
"sbo":"SBO:0000247"
}
},
{
"id":"mettrna_c",
"name":"L-Methionyl-tRNA (Met)",
"compartment":"c",
"charge":1,
"formula":"C5H10NOSR",
"notes":{
"original_bigg_ids":[
"mettrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"mettrna"
],
"kegg.compound":[
"C02430"
],
"metanetx.chemical":[
"MNXM90636"
],
"sabiork":[
"3852"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12105"
]
}
},
{
"id":"fprica_c",
"name":"5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide",
"compartment":"c",
"charge":-2,
"formula":"C10H13N4O9P",
"notes":{
"original_bigg_ids":[
"fprica_c"
]
},
"annotation":{
"bigg.metabolite":[
"fprica"
],
"biocyc":[
"META:PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE"
],
"chebi":[
"CHEBI:18967",
"CHEBI:12125",
"CHEBI:574",
"CHEBI:58467",
"CHEBI:18381"
],
"hmdb":[
"HMDB62708",
"HMDB01439"
],
"inchi_key":[
"ABCOOORLYAOBOZ-KQYNXXCUSA-L"
],
"kegg.compound":[
"C04734"
],
"metanetx.chemical":[
"MNXM456"
],
"reactome.compound":[
"111427"
],
"sabiork":[
"1892"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02884"
]
}
},
{
"id":"hghhlipa_c",
"name":"Heptosyl-glucosyl-heptosyl-heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-6,
"formula":"C137H242N2O62P2",
"notes":{
"original_bigg_ids":[
"hghhlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hghhlipa"
],
"metanetx.chemical":[
"MNXM147479"
],
"sbo":"SBO:0000247"
}
},
{
"id":"mg2_c",
"name":"Magnesium",
"compartment":"c",
"charge":2,
"formula":"Mg",
"notes":{
"original_bigg_ids":[
"mg2_c"
]
},
"annotation":{
"bigg.metabolite":[
"mg2"
],
"biocyc":[
"META:MG+2"
],
"chebi":[
"CHEBI:6635",
"CHEBI:18420",
"CHEBI:13379",
"CHEBI:39127",
"CHEBI:25112",
"CHEBI:49736"
],
"hmdb":[
"HMDB00547"
],
"inchi_key":[
"JLVVSXFLKOJNIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00305"
],
"metanetx.chemical":[
"MNXM653"
],
"reactome.compound":[
"29926",
"114632",
"5336432",
"109496"
],
"sabiork":[
"1327"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00254"
]
}
},
{
"id":"hghhlipan_c",
"name":"Heptosyl-glucosyl-heptosyl-heptosyl-kdo2-lipidA (glucosediamine)",
"compartment":"c",
"charge":-6,
"formula":"C137H244N4O60P2",
"notes":{
"original_bigg_ids":[
"hghhlipan_c"
]
},
"annotation":{
"bigg.metabolite":[
"hghhlipan"
],
"metanetx.chemical":[
"MNXM147480"
],
"sbo":"SBO:0000247"
}
},
{
"id":"frdp_c",
"name":"Farnesyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C15H25O7P2",
"notes":{
"original_bigg_ids":[
"frdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"frdp"
],
"biocyc":[
"META:FARNESYL-PP"
],
"chebi":[
"CHEBI:50277",
"CHEBI:19789",
"CHEBI:24016",
"CHEBI:12874",
"CHEBI:12854",
"CHEBI:10700",
"CHEBI:42496",
"CHEBI:175763",
"CHEBI:11488",
"CHEBI:11491",
"CHEBI:17407",
"CHEBI:14231"
],
"hmdb":[
"HMDB04201",
"HMDB00961"
],
"inchi_key":[
"VWFJDQUYCIWHTN-YFVJMOTDSA-K"
],
"kegg.compound":[
"C00448"
],
"lipidmaps":[
"LMPR0103010002"
],
"metanetx.chemical":[
"MNXM34"
],
"reactome.compound":[
"191385",
"2162257",
"4419987"
],
"sabiork":[
"5095"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00350"
]
}
},
{
"id":"micit_c",
"name":"Methylisocitrate",
"compartment":"c",
"charge":-3,
"formula":"C7H7O7",
"notes":{
"original_bigg_ids":[
"micit_c"
]
},
"annotation":{
"bigg.metabolite":[
"micit"
],
"biocyc":[
"META:CPD-618"
],
"chebi":[
"CHEBI:57429",
"CHEBI:189",
"CHEBI:18550",
"CHEBI:15607",
"CHEBI:10869"
],
"inchi_key":[
"HHKPKXCSHMJWCF-WVBDSBKLSA-K"
],
"kegg.compound":[
"C04593"
],
"lipidmaps":[
"LMFA01050444"
],
"metanetx.chemical":[
"MNXM1694"
],
"sabiork":[
"7424"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02799"
]
}
},
{
"id":"hgmeACP_c",
"name":"3-Hydroxyglutaryl-[acyl-carrier protein] methyl ester",
"compartment":"c",
"charge":-1,
"formula":"C17H29N2O11PRS",
"notes":{
"original_bigg_ids":[
"hgmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"hgmeACP"
],
"biocyc":[
"META:3-Hydroxyglutaryl-ACP-methyl-ester"
],
"kegg.compound":[
"C20373"
],
"metanetx.chemical":[
"MNXM97395"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22022"
]
}
},
{
"id":"mlthf_c",
"name":"5,10-Methylenetetrahydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C20H21N7O6",
"notes":{
"original_bigg_ids":[
"mlthf_c"
]
},
"annotation":{
"bigg.metabolite":[
"mlthf"
],
"biocyc":[
"META:METHYLENE-THF"
],
"chebi":[
"CHEBI:10925",
"CHEBI:15636",
"CHEBI:1989",
"CHEBI:18602"
],
"inchi_key":[
"QYNUQALWYRSVHF-OLZOCXBDSA-L"
],
"kegg.compound":[
"C00143"
],
"metanetx.chemical":[
"MNXM183"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hhlipa_c",
"name":"Heptosyl-heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-6,
"formula":"C124H220N2O51P2",
"notes":{
"original_bigg_ids":[
"hhlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hhlipa"
],
"biocyc":[
"META:CPD0-930"
],
"chebi":[
"CHEBI:61507",
"CHEBI:61523"
],
"inchi_key":[
"HHPCMWTVGVTYIC-CFEULOSXSA-H"
],
"metanetx.chemical":[
"MNXM2582"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15484"
]
}
},
{
"id":"mmcoa__R_c",
"name":"(R)-Methylmalonyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C25H35N7O19P3S",
"notes":{
"original_bigg_ids":[
"mmcoa_R_c"
]
},
"annotation":{
"bigg.metabolite":[
"mmcoa__R"
],
"biocyc":[
"META:METHYL-MALONYL-COA"
],
"chebi":[
"CHEBI:57326",
"CHEBI:15465",
"CHEBI:313",
"CHEBI:18654",
"CHEBI:10976"
],
"hmdb":[
"HMDB02255"
],
"inchi_key":[
"MZFOKIKEPGUZEN-AGCMQPJKSA-I"
],
"kegg.compound":[
"C01213"
],
"lipidmaps":[
"LMFA07050152"
],
"metanetx.chemical":[
"MNXM608"
],
"reactome.compound":[
"71009"
],
"sabiork":[
"2266"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29702",
"cpd00891"
]
}
},
{
"id":"hhlipan_c",
"name":"Heptosyl-heptosyl-kdo2-lipidA (glucosediaminyl)",
"compartment":"c",
"charge":-6,
"formula":"C124H222N4O49P2",
"notes":{
"original_bigg_ids":[
"hhlipan_c"
]
},
"annotation":{
"bigg.metabolite":[
"hhlipan"
],
"metanetx.chemical":[
"MNXM148275"
],
"sbo":"SBO:0000247"
}
},
{
"id":"mmcoa__S_c",
"name":"(S)-Methylmalonyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C25H35N7O19P3S",
"notes":{
"original_bigg_ids":[
"mmcoa_S_c"
]
},
"annotation":{
"bigg.metabolite":[
"mmcoa__S"
],
"biocyc":[
"META:D-METHYL-MALONYL-COA"
],
"chebi":[
"CHEBI:43874",
"CHEBI:18742",
"CHEBI:57327",
"CHEBI:384",
"CHEBI:11038",
"CHEBI:15466",
"CHEBI:11068"
],
"hmdb":[
"HMDB02310"
],
"inchi_key":[
"MZFOKIKEPGUZEN-IBNUZSNCSA-I"
],
"kegg.compound":[
"C00683"
],
"lipidmaps":[
"LMFA07050164"
],
"metanetx.chemical":[
"MNXM89955"
],
"reactome.compound":[
"71019"
],
"sabiork":[
"5180"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29701",
"cpd00519"
]
}
},
{
"id":"his__L_c",
"name":"L-Histidine",
"compartment":"c",
"formula":"C6H9N3O2",
"notes":{
"original_bigg_ids":[
"his_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"his__L"
],
"biocyc":[
"META:HIS"
],
"chebi":[
"CHEBI:43239",
"CHEBI:32529",
"CHEBI:43048",
"CHEBI:5733",
"CHEBI:32530",
"CHEBI:27570",
"CHEBI:32531",
"CHEBI:43118",
"CHEBI:32513",
"CHEBI:15971",
"CHEBI:43190",
"CHEBI:21324",
"CHEBI:32512",
"CHEBI:32511",
"CHEBI:13117",
"CHEBI:43114",
"CHEBI:32510",
"CHEBI:6240",
"CHEBI:32532",
"CHEBI:57595",
"CHEBI:24598"
],
"hmdb":[
"HMDB00177",
"HMDB03412"
],
"inchi_key":[
"HNDVDQJCIGZPNO-YFKPBYRVSA-N"
],
"kegg.compound":[
"C00768",
"C00135"
],
"kegg.drug":[
"D00032"
],
"metanetx.chemical":[
"MNXM134"
],
"reactome.compound":[
"379695",
"29612"
],
"sabiork":[
"2151",
"81"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00119",
"cpd00572"
]
}
},
{
"id":"hisp_c",
"name":"L-Histidinol phosphate",
"compartment":"c",
"charge":-1,
"formula":"C6H11N3O4P",
"notes":{
"original_bigg_ids":[
"hisp_c"
]
},
"annotation":{
"bigg.metabolite":[
"hisp"
],
"biocyc":[
"META:L-HISTIDINOL-P"
],
"chebi":[
"CHEBI:16996",
"CHEBI:43319",
"CHEBI:57980",
"CHEBI:6242",
"CHEBI:21327",
"CHEBI:13119"
],
"inchi_key":[
"CWNDERHTHMWBSI-YFKPBYRVSA-M"
],
"kegg.compound":[
"C01100"
],
"metanetx.chemical":[
"MNXM1482"
],
"sabiork":[
"1699"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00807"
]
}
},
{
"id":"nadph_c",
"name":"Nicotinamide adenine dinucleotide phosphate - reduced",
"compartment":"c",
"charge":-4,
"formula":"C21H26N7O17P3",
"notes":{
"original_bigg_ids":[
"nadph_c"
]
},
"annotation":{
"bigg.metabolite":[
"nadph"
],
"biocyc":[
"META:NADPH"
],
"chebi":[
"CHEBI:16474",
"CHEBI:7425",
"CHEBI:57783",
"CHEBI:21904",
"CHEBI:13399",
"CHEBI:13400",
"CHEBI:44286"
],
"hmdb":[
"HMDB06341",
"HMDB00221",
"HMDB00799"
],
"inchi_key":[
"ACFIXJIJDZMPPO-NNYOXOHSSA-J"
],
"kegg.compound":[
"C00005"
],
"metanetx.chemical":[
"MNXM6"
],
"reactome.compound":[
"113600",
"6790135",
"113602",
"113601",
"2000347",
"351627",
"29364",
"5623644",
"194725"
],
"sabiork":[
"1262"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00005"
]
}
},
{
"id":"ncam_c",
"name":"Nicotinamide",
"compartment":"c",
"formula":"C6H6N2O",
"notes":{
"original_bigg_ids":[
"ncam_c"
]
},
"annotation":{
"bigg.metabolite":[
"ncam"
],
"biocyc":[
"META:NIACINAMIDE"
],
"chebi":[
"CHEBI:14645",
"CHEBI:7556",
"CHEBI:25521",
"CHEBI:17154",
"CHEBI:44258"
],
"hmdb":[
"HMDB01406"
],
"inchi_key":[
"DFPAKSUCGFBDDF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00153"
],
"kegg.drug":[
"D00036"
],
"metanetx.chemical":[
"MNXM216"
],
"reactome.compound":[
"197277",
"8870343"
],
"sabiork":[
"1949"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00133"
]
}
},
{
"id":"nh4_c",
"name":"Ammonium",
"compartment":"c",
"charge":1,
"formula":"H4N",
"notes":{
"original_bigg_ids":[
"nh4_c"
]
},
"annotation":{
"bigg.metabolite":[
"nh4"
],
"biocyc":[
"META:AMMONIUM",
"META:AMMONIA"
],
"chebi":[
"CHEBI:44284",
"CHEBI:135980",
"CHEBI:22533",
"CHEBI:13406",
"CHEBI:29337",
"CHEBI:29340",
"CHEBI:13771",
"CHEBI:16134",
"CHEBI:28938",
"CHEBI:22534",
"CHEBI:13405",
"CHEBI:49783",
"CHEBI:7434",
"CHEBI:7435",
"CHEBI:44269",
"CHEBI:44404",
"CHEBI:13407"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/96667bd9-aeae-4e8f-89d3-100d0396af05",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/41e4c903-407f-49f7-bf6b-0a94d39fa3a7",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/27a89bdf-42f7-478f-91d8-e39881581096"
],
"hmdb":[
"HMDB00051",
"HMDB41827"
],
"inchi_key":[
"QGZKDVFQNNGYKY-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00014",
"C01342"
],
"kegg.drug":[
"D02916",
"D02915"
],
"metanetx.chemical":[
"MNXM15"
],
"reactome.compound":[
"5693978",
"1132163",
"29382",
"76230",
"140912",
"389843",
"2022135",
"31633",
"113561"
],
"sabiork":[
"1268",
"43"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19013",
"cpd00013"
]
}
},
{
"id":"mn2_c",
"name":"Manganese",
"compartment":"c",
"charge":2,
"formula":"Mn",
"notes":{
"original_bigg_ids":[
"mn2_c"
]
},
"annotation":{
"bigg.metabolite":[
"mn2"
],
"biocyc":[
"META:MN+2"
],
"chebi":[
"CHEBI:21435",
"CHEBI:25156",
"CHEBI:29035",
"CHEBI:49749"
],
"hmdb":[
"HMDB01333"
],
"inchi_key":[
"WAEMQWOKJMHJLA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19610"
],
"metanetx.chemical":[
"MNXM2255"
],
"reactome.compound":[
"29418",
"1981162"
],
"sabiork":[
"1279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20863",
"cpd00030"
]
}
},
{
"id":"ni2_c",
"name":"Nickel",
"compartment":"c",
"charge":2,
"formula":"Ni",
"notes":{
"original_bigg_ids":[
"ni2_c"
]
},
"annotation":{
"bigg.metabolite":[
"ni2"
],
"biocyc":[
"META:NI+2"
],
"chebi":[
"CHEBI:25517",
"CHEBI:49785",
"CHEBI:49786"
],
"hmdb":[
"HMDB02457"
],
"inchi_key":[
"VEQPNABPJHWNSG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19609"
],
"metanetx.chemical":[
"MNXM3673"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20862"
]
}
},
{
"id":"histd_c",
"name":"L-Histidinol",
"compartment":"c",
"charge":1,
"formula":"C6H12N3O",
"notes":{
"original_bigg_ids":[
"histd_c"
]
},
"annotation":{
"bigg.metabolite":[
"histd"
],
"biocyc":[
"META:HISTIDINOL"
],
"chebi":[
"CHEBI:13118",
"CHEBI:57699",
"CHEBI:16255",
"CHEBI:6241",
"CHEBI:21326"
],
"hmdb":[
"HMDB03431"
],
"inchi_key":[
"ZQISRDCJNBUVMM-YFKPBYRVSA-O"
],
"kegg.compound":[
"C00860"
],
"metanetx.chemical":[
"MNXM1281"
],
"sabiork":[
"5283"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00641"
]
}
},
{
"id":"moadamp_c",
"name":"MoaD Protein with bound AMP",
"compartment":"c",
"charge":-1,
"formula":"C11H12N5O8P1X",
"notes":{
"original_bigg_ids":[
"moadamp_c"
]
},
"annotation":{
"bigg.metabolite":[
"moadamp"
],
"metanetx.chemical":[
"MNXM148352"
],
"sbo":"SBO:0000247"
}
},
{
"id":"histrna_c",
"name":"L-Histidyl-tRNA(His)",
"compartment":"c",
"charge":1,
"formula":"C6H8N3OR",
"notes":{
"original_bigg_ids":[
"histrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"histrna"
],
"chebi":[
"CHEBI:13120",
"CHEBI:6243",
"CHEBI:29155"
],
"kegg.compound":[
"C02988"
],
"metanetx.chemical":[
"MNXM89831"
],
"reactome.compound":[
"379786",
"379764"
],
"sabiork":[
"3862"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12228"
]
}
},
{
"id":"nicrnt_c",
"name":"Nicotinate D-ribonucleotide",
"compartment":"c",
"charge":-2,
"formula":"C11H12NO9P",
"notes":{
"original_bigg_ids":[
"nicrnt_c"
]
},
"annotation":{
"bigg.metabolite":[
"nicrnt"
],
"biocyc":[
"META:NICOTINATE_NUCLEOTIDE"
],
"chebi":[
"CHEBI:7561",
"CHEBI:25532",
"CHEBI:14652",
"CHEBI:15763",
"CHEBI:12398",
"CHEBI:14651",
"CHEBI:57502"
],
"hmdb":[
"HMDB59646"
],
"inchi_key":[
"JOUIQRNQJGXQDC-ZYUZMQFOSA-L"
],
"kegg.compound":[
"C01185"
],
"metanetx.chemical":[
"MNXM194"
],
"reactome.compound":[
"200492",
"8938083",
"197220"
],
"sabiork":[
"5427"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00873"
]
}
},
{
"id":"moadcoo_c",
"name":"MoaD Protein with carboxylate",
"compartment":"c",
"charge":-1,
"formula":"C1O2X",
"notes":{
"original_bigg_ids":[
"moadcoo_c"
]
},
"annotation":{
"bigg.metabolite":[
"moadcoo"
],
"metanetx.chemical":[
"MNXM148353"
],
"sbo":"SBO:0000247"
}
},
{
"id":"nmn_c",
"name":"NMN C11H14N2O8P",
"compartment":"c",
"charge":-1,
"formula":"C11H14N2O8P",
"notes":{
"original_bigg_ids":[
"nmn_c"
]
},
"annotation":{
"bigg.metabolite":[
"nmn"
],
"biocyc":[
"META:NICOTINAMIDE_NUCLEOTIDE"
],
"chebi":[
"CHEBI:14648",
"CHEBI:7557",
"CHEBI:14647",
"CHEBI:22850",
"CHEBI:16171",
"CHEBI:10433",
"CHEBI:13409",
"CHEBI:14649",
"CHEBI:18201",
"CHEBI:25522",
"CHEBI:12397",
"CHEBI:14646"
],
"hmdb":[
"HMDB00229",
"HMDB59645"
],
"inchi_key":[
"DAYLJWODMCOQEW-TURQNECASA-M"
],
"kegg.compound":[
"C00455"
],
"metanetx.chemical":[
"MNXM355"
],
"reactome.compound":[
"8869353",
"549282",
"8940067"
],
"sabiork":[
"3871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00355"
]
}
},
{
"id":"hlipa_c",
"name":"Heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-6,
"formula":"C117H208N2O45P2",
"notes":{
"original_bigg_ids":[
"hlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hlipa"
],
"biocyc":[
"META:CPD0-929"
],
"chebi":[
"CHEBI:61502",
"CHEBI:61528"
],
"inchi_key":[
"HPDZKCJEWNZSML-YOZKHJKSSA-H"
],
"metanetx.chemical":[
"MNXM2680"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15485"
]
}
},
{
"id":"moadcosh_c",
"name":"MoaD Protein with thiocarboxylate",
"compartment":"c",
"formula":"C1H1O1S1X",
"notes":{
"original_bigg_ids":[
"moadcosh_c"
]
},
"annotation":{
"bigg.metabolite":[
"moadcosh"
],
"metanetx.chemical":[
"MNXM148354"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hlipan_c",
"name":"Heptosyl-kdo2-lipidA (glucosediaminyl)",
"compartment":"c",
"charge":-6,
"formula":"C117H210N4O43P2",
"notes":{
"original_bigg_ids":[
"hlipan_c"
]
},
"annotation":{
"bigg.metabolite":[
"hlipan"
],
"metanetx.chemical":[
"MNXM148276"
],
"sbo":"SBO:0000247"
}
},
{
"id":"mobd_c",
"name":"Molybdate",
"compartment":"c",
"charge":-2,
"formula":"MoO4",
"notes":{
"original_bigg_ids":[
"mobd_c"
]
},
"annotation":{
"bigg.metabolite":[
"mobd"
],
"biocyc":[
"META:CPD-3"
],
"chebi":[
"CHEBI:36263",
"CHEBI:25368",
"CHEBI:36264",
"CHEBI:25371",
"CHEBI:6967"
],
"hmdb":[
"HMDB12260"
],
"inchi_key":[
"MEFBJEMVZONFCJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06232"
],
"metanetx.chemical":[
"MNXM1026"
],
"reactome.compound":[
"947561"
],
"sabiork":[
"8470"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11574"
]
}
},
{
"id":"hmbil_c",
"name":"Hydroxymethylbilane",
"compartment":"c",
"charge":-8,
"formula":"C40H38N4O17",
"notes":{
"original_bigg_ids":[
"hmbil_c"
]
},
"annotation":{
"bigg.metabolite":[
"hmbil"
],
"biocyc":[
"META:HYDROXYMETHYLBILANE"
],
"chebi":[
"CHEBI:14423",
"CHEBI:5809",
"CHEBI:57845",
"CHEBI:16645",
"CHEBI:24716"
],
"hmdb":[
"HMDB01137"
],
"inchi_key":[
"WDFJYRZCZIUBPR-UHFFFAOYSA-F"
],
"kegg.compound":[
"C01024"
],
"metanetx.chemical":[
"MNXM547"
],
"reactome.compound":[
"189449"
],
"sabiork":[
"5362"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00755"
]
}
},
{
"id":"no_c",
"name":"Nitric oxide",
"compartment":"c",
"formula":"NO",
"notes":{
"original_bigg_ids":[
"no_c"
]
},
"annotation":{
"bigg.metabolite":[
"no"
],
"biocyc":[
"META:NITRIC-OXIDE"
],
"chebi":[
"CHEBI:16480",
"CHEBI:25546",
"CHEBI:14657",
"CHEBI:44452",
"CHEBI:7583"
],
"hmdb":[
"HMDB03378"
],
"inchi_key":[
"MWUXSHHQAYIFBG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00533"
],
"kegg.drug":[
"D00074"
],
"metanetx.chemical":[
"MNXM228"
],
"sbo":"SBO:0000247"
}
},
{
"id":"no2_c",
"name":"Nitrite",
"compartment":"c",
"charge":-1,
"formula":"NO2",
"notes":{
"original_bigg_ids":[
"no2_c"
]
},
"annotation":{
"bigg.metabolite":[
"no2"
],
"biocyc":[
"META:NITRITE"
],
"chebi":[
"CHEBI:16301",
"CHEBI:14658",
"CHEBI:7585",
"CHEBI:44396",
"CHEBI:25567"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/84af9b8c-5f58-4093-85cb-964ba8ed40b7"
],
"hmdb":[
"HMDB02786"
],
"inchi_key":[
"IOVCWXUNBOPUCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00088"
],
"metanetx.chemical":[
"MNXM107"
],
"reactome.compound":[
"1222379"
],
"sabiork":[
"3058"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00075"
]
}
},
{
"id":"moco_c",
"name":"Molybdenum cofactor",
"compartment":"c",
"charge":-2,
"formula":"C10H10N5O8PS2Mo",
"notes":{
"original_bigg_ids":[
"moco_c"
]
},
"annotation":{
"bigg.metabolite":[
"moco"
],
"chebi":[
"CHEBI:79026",
"CHEBI:60525"
],
"metanetx.chemical":[
"MNXM62305"
],
"sbo":"SBO:0000247"
}
},
{
"id":"no3_c",
"name":"Nitrate",
"compartment":"c",
"charge":-1,
"formula":"NO3",
"notes":{
"original_bigg_ids":[
"no3_c"
]
},
"annotation":{
"bigg.metabolite":[
"no3"
],
"biocyc":[
"META:NITRATE",
"META:CPD-15028"
],
"chebi":[
"CHEBI:44487",
"CHEBI:14654",
"CHEBI:71263",
"CHEBI:7580",
"CHEBI:17632",
"CHEBI:48107",
"CHEBI:25545"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/706be27f-b4cf-4022-b2ef-04cec5197ca5"
],
"hmdb":[
"HMDB02878",
"HMDB01853"
],
"inchi_key":[
"NHNBFGGVMKEFGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00244"
],
"kegg.drug":[
"D02313"
],
"metanetx.chemical":[
"MNXM207"
],
"sabiork":[
"1988"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00209"
]
}
},
{
"id":"hmgcoa_c",
"name":"Hydroxymethylglutaryl CoA C27H39N7O20P3S",
"compartment":"c",
"charge":-5,
"formula":"C27H39N7O20P3S",
"notes":{
"original_bigg_ids":[
"hmgcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hmgcoa"
],
"chebi":[
"CHEBI:11814"
],
"hmdb":[
"HMDB01375"
],
"inchi_key":[
"CABVTRNMFUVUDM-SJBCKIPMSA-I"
],
"lipidmaps":[
"LMFA07050209"
],
"metanetx.chemical":[
"MNXM36493"
],
"sabiork":[
"2029"
],
"sbo":"SBO:0000247"
}
},
{
"id":"mocogdp_c",
"name":"Molybdopterin guanine dinucleotide",
"compartment":"c",
"charge":-2,
"formula":"C20H22N10O15P2S2Mo",
"notes":{
"original_bigg_ids":[
"mocogdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"mocogdp"
],
"chebi":[
"CHEBI:30406",
"CHEBI:39830",
"CHEBI:30405",
"CHEBI:60535",
"CHEBI:30404",
"CHEBI:25374",
"CHEBI:44012",
"CHEBI:30403",
"CHEBI:45054"
],
"inchi_key":[
"VQAGYJCYOLHZDH-ILXWUORBSA-K"
],
"kegg.compound":[
"C19928"
],
"metanetx.chemical":[
"MNXM62333"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21167"
]
}
},
{
"id":"mpt_c",
"name":"Molybdopterin",
"compartment":"c",
"charge":-2,
"formula":"C10H10N5O6PS2Cu",
"notes":{
"original_bigg_ids":[
"mpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"mpt"
],
"biocyc":[
"META:CPD-4"
],
"chebi":[
"CHEBI:58698",
"CHEBI:44067",
"CHEBI:6969",
"CHEBI:44074"
],
"hmdb":[
"HMDB02206"
],
"inchi_key":[
"HPEUEJRPDGMIMY-IFQPEPLCSA-K"
],
"kegg.compound":[
"C05924"
],
"metanetx.chemical":[
"MNXM1193"
],
"reactome.compound":[
"947496"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03520"
]
}
},
{
"id":"hmpscoa_c",
"name":"(Hydroxymethylphenyl)succinyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C32H41N7O20P3S",
"notes":{
"original_bigg_ids":[
"hmpscoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hmpscoa"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c9661286-8eb6-4eb7-b6e6-7ad6d796e0a0"
],
"inchi_key":[
"DVSQFPLMOLPRDU-BFUQQYMQSA-I"
],
"kegg.compound":[
"C09819"
],
"metanetx.chemical":[
"MNXM91788"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd06711"
]
}
},
{
"id":"o2_c",
"name":"O2 O2",
"compartment":"c",
"formula":"O2",
"notes":{
"original_bigg_ids":[
"o2_c"
]
},
"annotation":{
"bigg.metabolite":[
"o2"
],
"biocyc":[
"META:OXYGEN-MOLECULE"
],
"chebi":[
"CHEBI:7860",
"CHEBI:26689",
"CHEBI:29097",
"CHEBI:15379",
"CHEBI:13416",
"CHEBI:27140",
"CHEBI:29793",
"CHEBI:30491",
"CHEBI:44742",
"CHEBI:23833",
"CHEBI:25366",
"CHEBI:10745"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/d5d12248-82d3-4cf3-b7d0-2e3d096768b4"
],
"hmdb":[
"HMDB01377"
],
"inchi_key":[
"MYMOFIZGZYHOMD-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00007"
],
"kegg.drug":[
"D00003"
],
"metanetx.chemical":[
"MNXM4"
],
"reactome.compound":[
"113534",
"113535",
"113685",
"5668566",
"189461",
"113533",
"1131511",
"352327",
"351593",
"29368",
"1236709"
],
"sabiork":[
"1264"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00007"
]
}
},
{
"id":"mptamp_c",
"name":"Adenylated molybdopterin",
"compartment":"c",
"charge":-2,
"formula":"C20H22N10O12P2S2Cu",
"notes":{
"original_bigg_ids":[
"mptamp_c"
]
},
"annotation":{
"bigg.metabolite":[
"mptamp"
],
"biocyc":[
"META:CPD-8122"
],
"chebi":[
"CHEBI:62728",
"CHEBI:62727"
],
"hmdb":[
"HMDB59628"
],
"inchi_key":[
"XJXFAXLUOKQPAQ-YPRLVJTJSA-K"
],
"kegg.compound":[
"C19848"
],
"metanetx.chemical":[
"MNXM3054"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21090"
]
}
},
{
"id":"o2s_c",
"name":"Superoxide anion",
"compartment":"c",
"charge":-1,
"formula":"O2",
"notes":{
"original_bigg_ids":[
"o2s_c"
]
},
"annotation":{
"bigg.metabolite":[
"o2s"
],
"biocyc":[
"META:SUPER-OXIDE"
],
"chebi":[
"CHEBI:25935",
"CHEBI:30492",
"CHEBI:7710",
"CHEBI:18421",
"CHEBI:15143",
"CHEBI:26839"
],
"hmdb":[
"HMDB02168"
],
"inchi_key":[
"OUUQCZGPVNCOIJ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00704"
],
"metanetx.chemical":[
"MNXM330"
],
"reactome.compound":[
"1222461",
"1475048",
"1470070"
],
"sabiork":[
"5191"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hom__L_c",
"name":"L-Homoserine",
"compartment":"c",
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"hom_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"hom__L"
],
"biocyc":[
"META:HOMO-SER"
],
"chebi":[
"CHEBI:57476",
"CHEBI:6246",
"CHEBI:21330",
"CHEBI:43131",
"CHEBI:15699",
"CHEBI:13123"
],
"hmdb":[
"HMDB00719"
],
"inchi_key":[
"UKAUYVFTDYCKQA-VKHMYHEASA-N"
],
"kegg.compound":[
"C00263"
],
"metanetx.chemical":[
"MNXM353"
],
"sabiork":[
"2001"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00227"
]
}
},
{
"id":"mql8_c",
"name":"Menaquinol 8",
"compartment":"c",
"formula":"C51H74O2",
"notes":{
"original_bigg_ids":[
"mql8_c"
]
},
"annotation":{
"bigg.metabolite":[
"mql8"
],
"biocyc":[
"META:REDUCED-MENAQUINONE"
],
"chebi":[
"CHEBI:61684"
],
"inchi_key":[
"OIEZRVBFVPGODT-WQWYCSGDSA-N"
],
"metanetx.chemical":[
"MNXM223"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15499"
]
}
},
{
"id":"oaa_c",
"name":"Oxaloacetate",
"compartment":"c",
"charge":-2,
"formula":"C4H2O5",
"notes":{
"original_bigg_ids":[
"oaa_c"
]
},
"annotation":{
"bigg.metabolite":[
"oaa"
],
"biocyc":[
"META:OXALACETIC_ACID"
],
"chebi":[
"CHEBI:25731",
"CHEBI:24959",
"CHEBI:12820",
"CHEBI:16452",
"CHEBI:30744",
"CHEBI:14703",
"CHEBI:24958",
"CHEBI:7812",
"CHEBI:25734",
"CHEBI:29049"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/133a11f3-81b0-4384-837e-1ccdd0a2a645",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/40afaad4-431a-4e3c-b4c7-020dbe4bdd2a",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/be7c543c-40bd-4698-9821-22f2e65c38f3"
],
"hmdb":[
"HMDB00223"
],
"inchi_key":[
"KHPXUQMNIQBQEV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00036"
],
"lipidmaps":[
"LMFA01170120"
],
"metanetx.chemical":[
"MNXM46"
],
"reactome.compound":[
"6810070",
"113587",
"76213"
],
"sabiork":[
"1915"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00032"
]
}
},
{
"id":"mqn8_c",
"name":"Menaquinone 8",
"compartment":"c",
"formula":"C51H72O2",
"notes":{
"original_bigg_ids":[
"mqn8_c"
]
},
"annotation":{
"bigg.metabolite":[
"mqn8"
],
"biocyc":[
"META:CPD-9728"
],
"chebi":[
"CHEBI:44027"
],
"inchi_key":[
"LXKDFTDVRVLXFY-WQWYCSGDSA-N"
],
"metanetx.chemical":[
"MNXM509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15500"
]
}
},
{
"id":"oc2coa_c",
"name":"Trans-Oct-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C29H44N7O17P3S",
"notes":{
"original_bigg_ids":[
"oc2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"oc2coa"
],
"biocyc":[
"META:CPD0-2108"
],
"chebi":[
"CHEBI:62242",
"CHEBI:27537",
"CHEBI:27078",
"CHEBI:10732"
],
"hmdb":[
"HMDB03949"
],
"inchi_key":[
"CPSDNAXXKWVYIY-NTLMCJQISA-J"
],
"kegg.compound":[
"C05276"
],
"lipidmaps":[
"LMFA07050024",
"LMFA07050394"
],
"metanetx.chemical":[
"MNXM784"
],
"reactome.compound":[
"6809800",
"77332"
],
"sabiork":[
"2753"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03130"
],
"slm":[
"000001033"
]
}
},
{
"id":"ocACP_c",
"name":"Octanoyl-ACP (n-C8:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C19H35N2O8PRS",
"notes":{
"original_bigg_ids":[
"ocACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocACP"
],
"metanetx.chemical":[
"MNXM90185"
],
"sbo":"SBO:0000247"
}
},
{
"id":"occoa_c",
"name":"Octanoyl-CoA (n-C8:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C29H46N7O17P3S",
"notes":{
"original_bigg_ids":[
"occoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"occoa"
],
"biocyc":[
"META:CPD-196"
],
"chebi":[
"CHEBI:41542",
"CHEBI:25651",
"CHEBI:7724",
"CHEBI:14681",
"CHEBI:15533",
"CHEBI:57386"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/803b8f43-e64d-427d-a22e-a38aca2708eb"
],
"hmdb":[
"HMDB06257",
"HMDB01070"
],
"inchi_key":[
"KQMZYOXOBSXMII-CECATXLMSA-J"
],
"kegg.compound":[
"C01944"
],
"lipidmaps":[
"LMFA07050355"
],
"metanetx.chemical":[
"MNXM342"
],
"reactome.compound":[
"390303",
"77337"
],
"sabiork":[
"2341"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01335"
],
"slm":[
"000000707"
]
}
},
{
"id":"hphaccoa_c",
"name":"4 Hydroxyphenylacetyl CoA C29H42N7O18P3S",
"compartment":"c",
"charge":-4,
"formula":"C29H38N7O18P3S",
"notes":{
"original_bigg_ids":[
"hphaccoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hphaccoa"
],
"biocyc":[
"META:4-HYDROXYPHENYLACETYL-COA"
],
"chebi":[
"CHEBI:28773",
"CHEBI:20421",
"CHEBI:1876"
],
"hmdb":[
"HMDB03967"
],
"inchi_key":[
"GPCAQTOAAYEBGJ-CECATXLMSA-J"
],
"kegg.compound":[
"C05338"
],
"metanetx.chemical":[
"MNXM37550"
],
"sabiork":[
"2772"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03165"
]
}
},
{
"id":"hpmeACP_c",
"name":"3-Hydroxypimeloyl-[acyl-carrier protein] methyl ester",
"compartment":"c",
"charge":-1,
"formula":"C19H33N2O11PRS",
"notes":{
"original_bigg_ids":[
"hpmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"hpmeACP"
],
"biocyc":[
"META:3-hydroxypimeloyl-ACP-methyl-esters"
],
"kegg.compound":[
"C20377"
],
"metanetx.chemical":[
"MNXM10038"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22065"
]
}
},
{
"id":"mso3_c",
"name":"Methanesulfonate",
"compartment":"c",
"charge":-1,
"formula":"CH3O3S",
"notes":{
"original_bigg_ids":[
"mso3_c"
]
},
"annotation":{
"bigg.metabolite":[
"mso3"
],
"biocyc":[
"META:CPD-3746"
],
"chebi":[
"CHEBI:6813",
"CHEBI:27376",
"CHEBI:25224"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/08e4702f-d7fe-43da-9a21-5771459eab73"
],
"inchi_key":[
"AFVFQIVMOAPDHO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C11145"
],
"metanetx.chemical":[
"MNXM1485"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08023"
]
}
},
{
"id":"hx2coa_c",
"name":"Trans-Hex-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C27H40N7O17P3S",
"notes":{
"original_bigg_ids":[
"hx2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hx2coa"
],
"biocyc":[
"META:CPD0-2121"
],
"chebi":[
"CHEBI:27076",
"CHEBI:28706",
"CHEBI:62077",
"CHEBI:10726"
],
"inchi_key":[
"OINXHIBNZUUIMR-IXUYQXAASA-J"
],
"kegg.compound":[
"C05271"
],
"lipidmaps":[
"LMFA07050393",
"LMFA07050019"
],
"metanetx.chemical":[
"MNXM753"
],
"reactome.compound":[
"77324"
],
"sabiork":[
"2748"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03125"
],
"slm":[
"000001034"
]
}
},
{
"id":"hxan_c",
"name":"Hypoxanthine",
"compartment":"c",
"formula":"C5H4N4O",
"notes":{
"original_bigg_ids":[
"hxan_c"
]
},
"annotation":{
"bigg.metabolite":[
"hxan"
],
"biocyc":[
"META:HYPOXANTHINE"
],
"chebi":[
"CHEBI:14431",
"CHEBI:43237",
"CHEBI:5841",
"CHEBI:17368",
"CHEBI:24762"
],
"hmdb":[
"HMDB00157"
],
"inchi_key":[
"FDGQSTZJBFJUBT-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00262"
],
"metanetx.chemical":[
"MNXM213"
],
"reactome.compound":[
"113599"
],
"sabiork":[
"5528",
"1321"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00226"
]
}
},
{
"id":"ocdca_c",
"name":"Octadecanoate (n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C18H35O2",
"notes":{
"original_bigg_ids":[
"ocdca_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocdca"
],
"biocyc":[
"META:STEARIC_ACID"
],
"chebi":[
"CHEBI:25631",
"CHEBI:231588",
"CHEBI:45710",
"CHEBI:25629",
"CHEBI:28842"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c0fae385-4844-4700-ba7a-96b6726ed216"
],
"hmdb":[
"HMDB00827"
],
"inchi_key":[
"QIQXTHQIDYTFRH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01530"
],
"kegg.drug":[
"D00119"
],
"lipidmaps":[
"LMFA01010018",
"LMFA01010047"
],
"metanetx.chemical":[
"MNXM236"
],
"reactome.compound":[
"428198"
],
"sabiork":[
"20032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01080"
],
"slm":[
"000000826"
]
}
},
{
"id":"ocdcaACP_c",
"name":"Octadecanoyl-ACP (n-C18:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C29H55N2O8PRS",
"notes":{
"original_bigg_ids":[
"ocdcaACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcaACP"
],
"metanetx.chemical":[
"MNXM3075"
],
"sbo":"SBO:0000247"
}
},
{
"id":"myrsACP_c",
"name":"Myristoyl-ACP (n-C14:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C25H47N2O8PRS",
"notes":{
"original_bigg_ids":[
"myrsACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"myrsACP"
],
"metanetx.chemical":[
"MNXM89779"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hxcoa_c",
"name":"Hexanoyl-CoA (n-C6:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C27H42N7O17P3S",
"notes":{
"original_bigg_ids":[
"hxcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hxcoa"
],
"metanetx.chemical":[
"MNXM162502"
],
"sbo":"SBO:0000247"
}
},
{
"id":"n2_c",
"name":"Nitrogen",
"compartment":"c",
"formula":"N2",
"notes":{
"original_bigg_ids":[
"n2_c"
]
},
"annotation":{
"bigg.metabolite":[
"n2"
],
"biocyc":[
"META:NITROGEN-MOLECULE"
],
"chebi":[
"CHEBI:7593",
"CHEBI:13388",
"CHEBI:30102",
"CHEBI:17997",
"CHEBI:30099",
"CHEBI:25365",
"CHEBI:14660",
"CHEBI:43128"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f4583a7f-9018-45bc-9a9c-545a7e4bc025",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8cc25506-23c5-423a-817d-68fb36ac7b81"
],
"hmdb":[
"HMDB01371"
],
"inchi_key":[
"IJGRMHOSHXDMSA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00697"
],
"kegg.drug":[
"D00083"
],
"metanetx.chemical":[
"MNXM724"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00528"
]
}
},
{
"id":"iasp_c",
"name":"Iminoaspartate",
"compartment":"c",
"charge":-2,
"formula":"C4H3NO4",
"notes":{
"original_bigg_ids":[
"iasp_c"
]
},
"annotation":{
"bigg.metabolite":[
"iasp"
],
"biocyc":[
"META:IMINOASPARTATE"
],
"chebi":[
"CHEBI:5878",
"CHEBI:77875",
"CHEBI:24784",
"CHEBI:50616",
"CHEBI:58831"
],
"hmdb":[
"HMDB01131"
],
"inchi_key":[
"NMUOATVLLQEYHI-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05840"
],
"lipidmaps":[
"LMFA01170110"
],
"metanetx.chemical":[
"MNXM599"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03470"
]
}
},
{
"id":"ocdcap_c",
"name":"Octadecanoyl-phosphate (n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C18H36O5P",
"notes":{
"original_bigg_ids":[
"ocdcap_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcap"
],
"metanetx.chemical":[
"MNXM147528"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ocdcea_c",
"name":"Octadecenoate (n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C18H33O2",
"notes":{
"original_bigg_ids":[
"ocdcea_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcea"
],
"biocyc":[
"META:OLEATE-CPD"
],
"chebi":[
"CHEBI:30823",
"CHEBI:25664",
"CHEBI:16196",
"CHEBI:7741",
"CHEBI:14684",
"CHEBI:104361",
"CHEBI:25663",
"CHEBI:44741"
],
"hmdb":[
"HMDB00207",
"HMDB02066"
],
"inchi_key":[
"ZQPPMHVWECSIRJ-KTKRTIGZSA-M"
],
"kegg.compound":[
"C00712"
],
"kegg.drug":[
"D02315"
],
"lipidmaps":[
"LMFA01030810",
"LMFA01030763",
"LMFA01030002"
],
"metanetx.chemical":[
"MNXM306"
],
"sabiork":[
"2139",
"28897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00536"
],
"slm":[
"000000418"
]
}
},
{
"id":"n2o_c",
"name":"Nitrous oxide",
"compartment":"c",
"formula":"N2O",
"notes":{
"original_bigg_ids":[
"n2o_c"
]
},
"annotation":{
"bigg.metabolite":[
"n2o"
],
"biocyc":[
"META:NITROUS-OXIDE"
],
"chebi":[
"CHEBI:14661",
"CHEBI:25568",
"CHEBI:7598",
"CHEBI:17045",
"CHEBI:44250"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/27f4cd6e-d42f-484e-8813-ef9e60aa5bf0"
],
"hmdb":[
"HMDB35807"
],
"inchi_key":[
"GQPLMRYTRLFLPF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00887"
],
"kegg.drug":[
"D00102"
],
"metanetx.chemical":[
"MNXM579"
],
"sabiork":[
"2179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00659"
]
}
},
{
"id":"ocdceap_c",
"name":"Octadecanoyl-phosphate (n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C18H34O5P",
"notes":{
"original_bigg_ids":[
"ocdceap_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocdceap"
],
"metanetx.chemical":[
"MNXM147529"
],
"sbo":"SBO:0000247"
}
},
{
"id":"n2ppn_c",
"name":"2-Nitropropane",
"compartment":"c",
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"n2ppn_c"
]
},
"annotation":{
"bigg.metabolite":[
"n2ppn"
],
"biocyc":[
"META:CPD-244"
],
"chebi":[
"CHEBI:16037",
"CHEBI:1226",
"CHEBI:19727",
"CHEBI:11632",
"CHEBI:44443"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/ff0094de-3f47-4afa-8028-0251fcf0bdf6"
],
"inchi_key":[
"FGLBSLMDCBOPQK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C02116"
],
"metanetx.chemical":[
"MNXM9868"
],
"sabiork":[
"6010"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01433"
]
}
},
{
"id":"octa_c",
"name":"Octanoate (n-C8:0)",
"compartment":"c",
"charge":-1,
"formula":"C8H15O2",
"notes":{
"original_bigg_ids":[
"octa_c"
]
},
"annotation":{
"bigg.metabolite":[
"octa"
],
"biocyc":[
"META:CPD-195"
],
"chebi":[
"CHEBI:25648",
"CHEBI:25646",
"CHEBI:28837",
"CHEBI:3373",
"CHEBI:44501"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2202db6c-dc64-4714-9f17-23dbbb8d637f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/7623a8e3-3436-493a-ad6e-13af00ad46d8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/fa5b4ef6-749e-42db-a909-7c6e56587bdd"
],
"hmdb":[
"HMDB62511",
"HMDB00482"
],
"inchi_key":[
"WWZKQHOCKIZLMA-UHFFFAOYSA-M"
],
"kegg.compound":[
"C06423"
],
"kegg.drug":[
"D05220"
],
"lipidmaps":[
"LMFA01010008"
],
"metanetx.chemical":[
"MNXM750"
],
"sabiork":[
"2889"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03846"
],
"slm":[
"000000853"
]
}
},
{
"id":"ibcoa_c",
"name":"Isobutyryl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H38N7O17P3S",
"notes":{
"original_bigg_ids":[
"ibcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ibcoa"
],
"biocyc":[
"META:ISOBUTYRYL-COA"
],
"chebi":[
"CHEBI:11629",
"CHEBI:57338",
"CHEBI:1214",
"CHEBI:15479",
"CHEBI:19712",
"CHEBI:41634",
"CHEBI:12754"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f0cf0f7f-ee44-4653-86ea-22cfc21bed36"
],
"hmdb":[
"HMDB01243"
],
"inchi_key":[
"AEWHYWSPVRZHCT-NDZSKPAWSA-J"
],
"kegg.compound":[
"C00630"
],
"lipidmaps":[
"LMFA07050331"
],
"metanetx.chemical":[
"MNXM470"
],
"reactome.compound":[
"70851"
],
"sabiork":[
"2125"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00481"
]
}
},
{
"id":"na1_c",
"name":"Sodium",
"compartment":"c",
"charge":1,
"formula":"Na",
"notes":{
"original_bigg_ids":[
"na1_c"
]
},
"annotation":{
"bigg.metabolite":[
"na1"
],
"biocyc":[
"META:NA+"
],
"chebi":[
"CHEBI:9175",
"CHEBI:49766",
"CHEBI:26717",
"CHEBI:29101"
],
"hmdb":[
"HMDB00588"
],
"inchi_key":[
"FKNQFGJONOIPTF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01330"
],
"metanetx.chemical":[
"MNXM27"
],
"reactome.compound":[
"2892454",
"83910",
"74113",
"425977",
"425971",
"2872443",
"425958"
],
"sabiork":[
"22"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00971"
]
}
},
{
"id":"icit_c",
"name":"Isocitrate",
"compartment":"c",
"charge":-3,
"formula":"C6H5O7",
"notes":{
"original_bigg_ids":[
"icit_c"
]
},
"annotation":{
"bigg.metabolite":[
"icit"
],
"chebi":[
"CHEBI:16087",
"CHEBI:36454",
"CHEBI:5998",
"CHEBI:24886",
"CHEBI:36453",
"CHEBI:14465",
"CHEBI:30887",
"CHEBI:24884"
],
"hmdb":[
"HMDB00193"
],
"inchi_key":[
"ODBLHEXUDAPZAU-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00311"
],
"metanetx.chemical":[
"MNXM89661"
],
"sabiork":[
"2013"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00260"
]
}
},
{
"id":"octdp_c",
"name":"All-trans-Octaprenyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C40H65O7P2",
"notes":{
"original_bigg_ids":[
"octdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"octdp"
],
"biocyc":[
"META:OCTAPRENYL-DIPHOSPHATE"
],
"chebi":[
"CHEBI:12781",
"CHEBI:57711",
"CHEBI:53045",
"CHEBI:22346",
"CHEBI:44585",
"CHEBI:16275",
"CHEBI:10194"
],
"hmdb":[
"HMDB01094"
],
"inchi_key":[
"IKKLDISSULFFQO-DJMILUHSSA-K"
],
"kegg.compound":[
"C04146"
],
"lipidmaps":[
"LMPR01070226"
],
"metanetx.chemical":[
"MNXM811"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30761",
"cpd02557"
]
}
},
{
"id":"octeACP_c",
"name":"Cis-octadec-11-enoyl-[acyl-carrier protein] (n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C29H53N2O8PRS",
"notes":{
"original_bigg_ids":[
"octeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"octeACP"
],
"metanetx.chemical":[
"MNXM89950"
],
"sbo":"SBO:0000247"
}
},
{
"id":"nac_c",
"name":"Nicotinate",
"compartment":"c",
"charge":-1,
"formula":"C6H4NO2",
"notes":{
"original_bigg_ids":[
"nac_c"
]
},
"annotation":{
"bigg.metabolite":[
"nac"
],
"biocyc":[
"META:NIACINE"
],
"chebi":[
"CHEBI:7559",
"CHEBI:14650",
"CHEBI:32544",
"CHEBI:25538",
"CHEBI:25530",
"CHEBI:22851",
"CHEBI:44319",
"CHEBI:15940"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ed8ac75f-3a91-484c-9d21-d318ef0efef6",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ca85f0e1-e6b7-458b-8f88-d4ed6b580217"
],
"hmdb":[
"HMDB01488"
],
"inchi_key":[
"PVNIIMVLHYAWGP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00253"
],
"kegg.drug":[
"D00049"
],
"metanetx.chemical":[
"MNXM274"
],
"reactome.compound":[
"8869604",
"197230"
],
"sabiork":[
"1994"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00218"
]
}
},
{
"id":"od2coa_c",
"name":"Trans-Octadec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C39H64N7O17P3S",
"notes":{
"original_bigg_ids":[
"od2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"od2coa"
],
"biocyc":[
"META:CPD-10262"
],
"chebi":[
"CHEBI:50570",
"CHEBI:71412"
],
"hmdb":[
"HMDB62633",
"HMDB06529"
],
"inchi_key":[
"NBCCUIHOHUKBMK-ZDDAFBBHSA-J"
],
"kegg.compound":[
"C16218"
],
"lipidmaps":[
"LMFA07050385"
],
"metanetx.chemical":[
"MNXM954"
],
"reactome.compound":[
"548809"
],
"sabiork":[
"18861"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14937"
],
"slm":[
"000000817"
]
}
},
{
"id":"nad_c",
"name":"Nicotinamide adenine dinucleotide",
"compartment":"c",
"charge":-1,
"formula":"C21H26N7O14P2",
"notes":{
"original_bigg_ids":[
"nad_c"
]
},
"annotation":{
"bigg.metabolite":[
"nad"
],
"biocyc":[
"META:NAD"
],
"chebi":[
"CHEBI:7422",
"CHEBI:44215",
"CHEBI:13394",
"CHEBI:21901",
"CHEBI:57540",
"CHEBI:15846",
"CHEBI:44281",
"CHEBI:44214",
"CHEBI:13393",
"CHEBI:29867"
],
"hmdb":[
"HMDB00902"
],
"inchi_key":[
"BAWFJGJZGIEFAR-NNYOXOHSSA-M"
],
"kegg.compound":[
"C00003"
],
"kegg.drug":[
"D00002"
],
"metanetx.chemical":[
"MNXM8"
],
"reactome.compound":[
"352330",
"192307",
"194653",
"113526",
"29360"
],
"sabiork":[
"37"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00003"
]
}
},
{
"id":"idp_c",
"name":"IDP C10H11N4O11P2",
"compartment":"c",
"charge":-3,
"formula":"C10H11N4O11P2",
"notes":{
"original_bigg_ids":[
"idp_c"
]
},
"annotation":{
"bigg.metabolite":[
"idp"
],
"biocyc":[
"META:IDP"
],
"chebi":[
"CHEBI:17808",
"CHEBI:58280",
"CHEBI:43252",
"CHEBI:19270",
"CHEBI:13371",
"CHEBI:5848"
],
"hmdb":[
"HMDB03335"
],
"inchi_key":[
"JPXZQMKKFWMMGK-KQYNXXCUSA-K"
],
"kegg.compound":[
"C00104"
],
"metanetx.chemical":[
"MNXM495"
],
"reactome.compound":[
"2509811"
],
"sabiork":[
"1299"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00090"
]
}
},
{
"id":"nadh_c",
"name":"Nicotinamide adenine dinucleotide - reduced",
"compartment":"c",
"charge":-2,
"formula":"C21H27N7O14P2",
"notes":{
"original_bigg_ids":[
"nadh_c"
]
},
"annotation":{
"bigg.metabolite":[
"nadh"
],
"biocyc":[
"META:NADH"
],
"chebi":[
"CHEBI:13395",
"CHEBI:21902",
"CHEBI:7423",
"CHEBI:44216",
"CHEBI:57945",
"CHEBI:16908",
"CHEBI:13396"
],
"hmdb":[
"HMDB01487"
],
"inchi_key":[
"BOPGDPNILDQYTO-NNYOXOHSSA-L"
],
"kegg.compound":[
"C00004"
],
"metanetx.chemical":[
"MNXM10"
],
"reactome.compound":[
"192305",
"73473",
"29362",
"194697"
],
"sabiork":[
"38"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00004"
]
}
},
{
"id":"odecoa_c",
"name":"Octadecenoyl-CoA (n-C18:1CoA)",
"compartment":"c",
"charge":-4,
"formula":"C39H64N7O17P3S",
"notes":{
"original_bigg_ids":[
"odecoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"odecoa"
],
"metanetx.chemical":[
"MNXM1848"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ogmeACP_c",
"name":"3-Oxo-glutaryl-[acyl-carrier protein] methyl ester",
"compartment":"c",
"charge":-1,
"formula":"C17H27N2O11PRS",
"notes":{
"original_bigg_ids":[
"ogmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ogmeACP"
],
"metanetx.chemical":[
"MNXM147799"
],
"sbo":"SBO:0000247"
}
},
{
"id":"nadp_c",
"name":"Nicotinamide adenine dinucleotide phosphate",
"compartment":"c",
"charge":-3,
"formula":"C21H25N7O17P3",
"notes":{
"original_bigg_ids":[
"nadp_c"
]
},
"annotation":{
"bigg.metabolite":[
"nadp"
],
"biocyc":[
"META:NADP"
],
"chebi":[
"CHEBI:29868",
"CHEBI:44405",
"CHEBI:25523",
"CHEBI:13397",
"CHEBI:18009",
"CHEBI:7424",
"CHEBI:13398",
"CHEBI:21903",
"CHEBI:58349",
"CHEBI:44409"
],
"hmdb":[
"HMDB00217"
],
"inchi_key":[
"XJLXINKUBYWONI-NNYOXOHSSA-K"
],
"kegg.compound":[
"C00006"
],
"metanetx.chemical":[
"MNXM5"
],
"reactome.compound":[
"194668",
"113563",
"6790191",
"5623650",
"2000348",
"389556",
"29366",
"351628",
"113564"
],
"sabiork":[
"1263"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00006"
]
}
},
{
"id":"ohpb_c",
"name":"2-Oxo-3-hydroxy-4-phosphobutanoate",
"compartment":"c",
"charge":-3,
"formula":"C4H4O8P",
"notes":{
"original_bigg_ids":[
"ohpb_c"
]
},
"annotation":{
"bigg.metabolite":[
"ohpb"
],
"biocyc":[
"META:3OH-4P-OH-ALPHA-KETOBUTYRATE"
],
"chebi":[
"CHEBI:19731",
"CHEBI:58538",
"CHEBI:1240",
"CHEBI:27951"
],
"hmdb":[
"HMDB06801"
],
"inchi_key":[
"MZJFVXDTNBHTKZ-UWTATZPHSA-K"
],
"kegg.compound":[
"C06054"
],
"metanetx.chemical":[
"MNXM1514"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03606"
]
}
},
{
"id":"trnagln_c",
"name":"TRNA(Gln)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnagln_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnagln"
],
"biocyc":[
"META:GLN-tRNAs"
],
"chebi":[
"CHEBI:29168",
"CHEBI:10679",
"CHEBI:15174"
],
"kegg.compound":[
"C01640"
],
"metanetx.chemical":[
"MNXM71"
],
"reactome.compound":[
"379740",
"379748"
],
"sabiork":[
"3836"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11911",
"cpd27100"
]
}
},
{
"id":"opmeACP_c",
"name":"3-Oxo-pimeloyl-[acyl-carrier protein] methyl ester",
"compartment":"c",
"charge":-1,
"formula":"C19H31N2O11PRS",
"notes":{
"original_bigg_ids":[
"opmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"opmeACP"
],
"metanetx.chemical":[
"MNXM147801"
],
"sbo":"SBO:0000247"
}
},
{
"id":"orn_c",
"name":"Ornithine",
"compartment":"c",
"charge":1,
"formula":"C5H13N2O2",
"notes":{
"original_bigg_ids":[
"orn_c"
]
},
"annotation":{
"bigg.metabolite":[
"orn"
],
"biocyc":[
"META:L-ORNITHINE"
],
"chebi":[
"CHEBI:21367",
"CHEBI:44667",
"CHEBI:46912",
"CHEBI:11448",
"CHEBI:7784",
"CHEBI:46913",
"CHEBI:19370",
"CHEBI:13148",
"CHEBI:15729",
"CHEBI:32964",
"CHEBI:6280",
"CHEBI:46911",
"CHEBI:46914",
"CHEBI:18257"
],
"hmdb":[
"HMDB62718",
"HMDB04984",
"HMDB00214",
"HMDB00818",
"HMDB32455",
"HMDB62654"
],
"inchi_key":[
"AHLPHDHHMVZTML-BYPYZUCNSA-O"
],
"kegg.compound":[
"C00077",
"C01602"
],
"kegg.drug":[
"D08302"
],
"lipidmaps":[
"LMFA01100057"
],
"metanetx.chemical":[
"MNXM89689"
],
"reactome.compound":[
"29498",
"113586",
"113585"
],
"sabiork":[
"1290"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00064",
"cpd19016"
]
}
},
{
"id":"orot_c",
"name":"Orotate C5H3N2O4",
"compartment":"c",
"charge":-1,
"formula":"C5H3N2O4",
"notes":{
"original_bigg_ids":[
"orot_c"
]
},
"annotation":{
"bigg.metabolite":[
"orot"
],
"biocyc":[
"META:OROTATE"
],
"chebi":[
"CHEBI:14698",
"CHEBI:7787",
"CHEBI:16742",
"CHEBI:25720",
"CHEBI:44781",
"CHEBI:30839",
"CHEBI:25719"
],
"hmdb":[
"HMDB00226"
],
"inchi_key":[
"PXQPEWDEAKTCGB-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00295"
],
"kegg.drug":[
"D00055"
],
"metanetx.chemical":[
"MNXM235"
],
"reactome.compound":[
"76632"
],
"sabiork":[
"2009"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00247"
]
}
},
{
"id":"ppp9_c",
"name":"Protoporphyrin",
"compartment":"c",
"charge":-2,
"formula":"C34H32N4O4",
"notes":{
"original_bigg_ids":[
"ppp9_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppp9"
],
"biocyc":[
"META:PROTOPORPHYRIN_IX"
],
"chebi":[
"CHEBI:15430",
"CHEBI:14961",
"CHEBI:26358",
"CHEBI:8592",
"CHEBI:14960",
"CHEBI:14959",
"CHEBI:36159",
"CHEBI:57306"
],
"hmdb":[
"HMDB00241"
],
"inchi_key":[
"KSFOVUSSGSKXFI-UJJXFSCMSA-L"
],
"kegg.compound":[
"C02191"
],
"metanetx.chemical":[
"MNXM346"
],
"reactome.compound":[
"189487",
"189463"
],
"sabiork":[
"6061"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01476"
]
}
},
{
"id":"trnaglu_c",
"name":"TRNA (Glu)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaglu"
],
"biocyc":[
"META:GLT-tRNAs"
],
"chebi":[
"CHEBI:15175",
"CHEBI:29175",
"CHEBI:10680"
],
"kegg.compound":[
"C01641"
],
"metanetx.chemical":[
"MNXM90886"
],
"reactome.compound":[
"379778",
"379754"
],
"sabiork":[
"3835"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11912"
]
}
},
{
"id":"pppg9_c",
"name":"Protoporphyrinogen IX",
"compartment":"c",
"charge":-2,
"formula":"C34H38N4O4",
"notes":{
"original_bigg_ids":[
"pppg9_c"
]
},
"annotation":{
"bigg.metabolite":[
"pppg9"
],
"biocyc":[
"META:PROTOPORPHYRINOGEN"
],
"chebi":[
"CHEBI:57307",
"CHEBI:26360",
"CHEBI:26359",
"CHEBI:15435",
"CHEBI:8593",
"CHEBI:14962"
],
"hmdb":[
"HMDB01097"
],
"inchi_key":[
"UHSGPDMIQQYNAX-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01079"
],
"metanetx.chemical":[
"MNXM351"
],
"reactome.compound":[
"189478"
],
"sabiork":[
"5384"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00791"
]
}
},
{
"id":"orot5p_c",
"name":"Orotidine 5'-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C10H10N2O11P",
"notes":{
"original_bigg_ids":[
"orot5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"orot5p"
],
"biocyc":[
"META:OROTIDINE-5-PHOSPHATE"
],
"chebi":[
"CHEBI:57538",
"CHEBI:15842",
"CHEBI:14699",
"CHEBI:7788",
"CHEBI:25723"
],
"hmdb":[
"HMDB00218"
],
"inchi_key":[
"KYOBSHFOBAOFBF-XVFCMESISA-K"
],
"kegg.compound":[
"C01103"
],
"metanetx.chemical":[
"MNXM519"
],
"reactome.compound":[
"111629"
],
"sabiork":[
"1700"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00810"
]
}
},
{
"id":"oxa_c",
"name":"Oxalate",
"compartment":"c",
"charge":-2,
"formula":"C2O4",
"notes":{
"original_bigg_ids":[
"oxa_c"
]
},
"annotation":{
"bigg.metabolite":[
"oxa"
],
"biocyc":[
"META:OXALATE"
],
"chebi":[
"CHEBI:46904",
"CHEBI:14702",
"CHEBI:44583",
"CHEBI:132952",
"CHEBI:30623",
"CHEBI:44820",
"CHEBI:7811",
"CHEBI:25730",
"CHEBI:16995",
"CHEBI:25729"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/33fed278-dbd7-421a-aac0-6c9da2f52882",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09f794f3-250c-406d-9481-e8bd691395c0",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c85291d2-bb9f-4f78-b6d0-c543bc53b2dc",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/96c40666-898b-4e97-bdfe-43dc9d76caed"
],
"hmdb":[
"HMDB02329"
],
"inchi_key":[
"MUBZPKHOEPUJKR-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00209"
],
"metanetx.chemical":[
"MNXM291"
],
"reactome.compound":[
"389819"
],
"sabiork":[
"1975"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00180"
]
}
},
{
"id":"trnagly_c",
"name":"TRNA(Gly)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnagly_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnagly"
],
"biocyc":[
"META:GLY-tRNAs"
],
"chebi":[
"CHEBI:10681",
"CHEBI:15177",
"CHEBI:29176"
],
"kegg.compound":[
"C01642"
],
"metanetx.chemical":[
"MNXM90340"
],
"reactome.compound":[
"379766",
"379770"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11913",
"cpd27116"
]
}
},
{
"id":"pppi_c",
"name":"Inorganic triphosphate",
"compartment":"c",
"charge":-4,
"formula":"HO10P3",
"notes":{
"original_bigg_ids":[
"pppi_c"
]
},
"annotation":{
"bigg.metabolite":[
"pppi"
],
"biocyc":[
"META:P3I"
],
"chebi":[
"CHEBI:48315",
"CHEBI:39949",
"CHEBI:29203",
"CHEBI:9744",
"CHEBI:48316",
"CHEBI:39942",
"CHEBI:48314",
"CHEBI:18036",
"CHEBI:5926",
"CHEBI:48313"
],
"hmdb":[
"HMDB12282",
"HMDB03379"
],
"inchi_key":[
"UNXRWKVEANCORM-UHFFFAOYSA-I"
],
"kegg.compound":[
"C00536"
],
"metanetx.chemical":[
"MNXM332"
],
"sabiork":[
"1681",
"5073"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11672",
"cpd00421"
]
}
},
{
"id":"trnahis_c",
"name":"TRNA(His)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnahis_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnahis"
],
"biocyc":[
"META:HIS-tRNAs"
],
"chebi":[
"CHEBI:15178",
"CHEBI:29178",
"CHEBI:10682"
],
"kegg.compound":[
"C01643"
],
"metanetx.chemical":[
"MNXM90878"
],
"reactome.compound":[
"379752",
"379758"
],
"sabiork":[
"3842"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27218",
"cpd11914"
]
}
},
{
"id":"pram_c",
"name":"5-Phospho-beta-D-ribosylamine",
"compartment":"c",
"charge":-1,
"formula":"C5H11NO7P",
"notes":{
"original_bigg_ids":[
"pram_c"
]
},
"annotation":{
"bigg.metabolite":[
"pram"
],
"biocyc":[
"META:5-P-BETA-D-RIBOSYL-AMINE"
],
"chebi":[
"CHEBI:12161",
"CHEBI:37737",
"CHEBI:42834",
"CHEBI:2123",
"CHEBI:20626",
"CHEBI:58681"
],
"hmdb":[
"HMDB01128",
"HMDB02347",
"HMDB62576"
],
"inchi_key":[
"SKCBPEVYGOQGJN-TXICZTDVSA-M"
],
"kegg.compound":[
"C03090"
],
"metanetx.chemical":[
"MNXM90003"
],
"reactome.compound":[
"111292"
],
"sabiork":[
"1884"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01982"
]
}
},
{
"id":"pa120_c",
"name":"1,2-didodecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C27H51O8P1",
"notes":{
"original_bigg_ids":[
"pa120_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa120"
],
"metanetx.chemical":[
"MNXM90509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15521"
]
}
},
{
"id":"trnaile_c",
"name":"TRNA(Ile)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaile_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaile"
],
"biocyc":[
"META:ILE-tRNAs"
],
"chebi":[
"CHEBI:29174",
"CHEBI:15179",
"CHEBI:10683"
],
"kegg.compound":[
"C01644"
],
"metanetx.chemical":[
"MNXM90879"
],
"reactome.compound":[
"379739",
"379750"
],
"sabiork":[
"3832"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27269",
"cpd11915"
]
}
},
{
"id":"pa140_c",
"name":"1,2-ditetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C31H59O8P1",
"notes":{
"original_bigg_ids":[
"pa140_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa140"
],
"biocyc":[
"META:CPD0-1425"
],
"chebi":[
"CHEBI:84266",
"CHEBI:62085",
"CHEBI:83321",
"CHEBI:83550"
],
"inchi_key":[
"OZSITQMWYBNPMW-GDLZYMKVSA-L"
],
"lipidmaps":[
"LMGP10010026"
],
"metanetx.chemical":[
"MNXM51017"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26150",
"cpd15522"
],
"slm":[
"000025497"
]
}
},
{
"id":"pran_c",
"name":"N-(5-Phospho-D-ribosyl)anthranilate",
"compartment":"c",
"charge":-3,
"formula":"C12H13NO9P",
"notes":{
"original_bigg_ids":[
"pran_c"
]
},
"annotation":{
"bigg.metabolite":[
"pran"
],
"biocyc":[
"META:N-5-PHOSPHORIBOSYL-ANTHRANILATE"
],
"chebi":[
"CHEBI:12431",
"CHEBI:21472",
"CHEBI:12432",
"CHEBI:21488",
"CHEBI:7091",
"CHEBI:18277"
],
"inchi_key":[
"PMFMJXPRNJUYMB-GWOFURMSSA-K"
],
"kegg.compound":[
"C04302"
],
"metanetx.chemical":[
"MNXM1489"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02642"
]
}
},
{
"id":"trnaleu_c",
"name":"TRNA(Leu)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaleu_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaleu"
],
"biocyc":[
"META:LEU-tRNAs"
],
"chebi":[
"CHEBI:10684",
"CHEBI:29169",
"CHEBI:15180"
],
"kegg.compound":[
"C01645"
],
"metanetx.chemical":[
"MNXM90880"
],
"reactome.compound":[
"379788",
"379771"
],
"sabiork":[
"3850"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11916",
"cpd27383"
]
}
},
{
"id":"prbamp_c",
"name":"1-(5-Phosphoribosyl)-AMP",
"compartment":"c",
"charge":-4,
"formula":"C15H19N5O14P2",
"notes":{
"original_bigg_ids":[
"prbamp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prbamp"
],
"biocyc":[
"META:PHOSPHORIBOSYL-AMP"
],
"chebi":[
"CHEBI:7354",
"CHEBI:11195",
"CHEBI:37522",
"CHEBI:59457",
"CHEBI:18374",
"CHEBI:8166",
"CHEBI:20628"
],
"hmdb":[
"HMDB12276"
],
"inchi_key":[
"RTQMRTSPTLIIHM-KEOHHSTQSA-J"
],
"kegg.compound":[
"C02741"
],
"metanetx.chemical":[
"MNXM1515"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01777"
]
}
},
{
"id":"pa141_c",
"name":"1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C31H55O8P1",
"notes":{
"original_bigg_ids":[
"pa141_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa141"
],
"metanetx.chemical":[
"MNXM90512"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15523"
]
}
},
{
"id":"pa160_c",
"name":"1,2-dihexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C35H67O8P1",
"notes":{
"original_bigg_ids":[
"pa160_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa160"
],
"biocyc":[
"META:CPD0-1422"
],
"chebi":[
"CHEBI:72859",
"CHEBI:73246"
],
"hmdb":[
"HMDB00674",
"HMDB07857"
],
"inchi_key":[
"PORPENFLTBBHSG-MGBGTMOVSA-L"
],
"lipidmaps":[
"LMGP10010027"
],
"metanetx.chemical":[
"MNXM17312"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26147",
"cpd15524"
],
"slm":[
"000000808"
]
}
},
{
"id":"trnalys_c",
"name":"TRNA(Lys)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnalys_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnalys"
],
"biocyc":[
"META:LYS-tRNAs"
],
"chebi":[
"CHEBI:10685",
"CHEBI:29185",
"CHEBI:15181"
],
"kegg.compound":[
"C01646"
],
"metanetx.chemical":[
"MNXM90881"
],
"reactome.compound":[
"379747",
"379776"
],
"sabiork":[
"3845"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11917",
"cpd27388"
]
}
},
{
"id":"pa161_c",
"name":"1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C35H63O8P1",
"notes":{
"original_bigg_ids":[
"pa161_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa161"
],
"metanetx.chemical":[
"MNXM90510"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15525"
]
}
},
{
"id":"prbatp_c",
"name":"1-(5-Phosphoribosyl)-ATP",
"compartment":"c",
"charge":-6,
"formula":"C15H19N5O20P4",
"notes":{
"original_bigg_ids":[
"prbatp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prbatp"
],
"biocyc":[
"META:PHOSPHORIBOSYL-ATP"
],
"chebi":[
"CHEBI:73200",
"CHEBI:58424",
"CHEBI:11196",
"CHEBI:18263",
"CHEBI:73183",
"CHEBI:8167",
"CHEBI:18970",
"CHEBI:59460",
"CHEBI:11192"
],
"hmdb":[
"HMDB03665"
],
"inchi_key":[
"RKNHJBVBFHDXGR-KEOHHSTQSA-H"
],
"kegg.compound":[
"C02739"
],
"metanetx.chemical":[
"MNXM1351"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01775"
]
}
},
{
"id":"trnamet_c",
"name":"TRNA(Met)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnamet_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnamet"
],
"biocyc":[
"META:Elongation-tRNAMet"
],
"chebi":[
"CHEBI:15182",
"CHEBI:10686",
"CHEBI:29173"
],
"kegg.compound":[
"C01647"
],
"metanetx.chemical":[
"MNXM90882"
],
"reactome.compound":[
"5603445",
"5603441",
"379741",
"379742"
],
"sabiork":[
"3849"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11918"
]
}
},
{
"id":"preq0_c",
"name":"7-cyano-7-carbaguanine",
"compartment":"c",
"formula":"C7H5N5O",
"notes":{
"original_bigg_ids":[
"preq0_c"
]
},
"annotation":{
"bigg.metabolite":[
"preq0"
],
"biocyc":[
"META:7-CYANO-7-DEAZAGUANINE"
],
"chebi":[
"CHEBI:45075",
"CHEBI:677358"
],
"inchi_key":[
"FMKSMYDYKXQYRV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C15996"
],
"metanetx.chemical":[
"MNXM2207"
],
"sabiork":[
"28950"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14718"
]
}
},
{
"id":"pa180_c",
"name":"1,2-dioctadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C39H75O8P1",
"notes":{
"original_bigg_ids":[
"pa180_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa180"
],
"biocyc":[
"META:CPD0-1423"
],
"chebi":[
"CHEBI:82921",
"CHEBI:83774"
],
"inchi_key":[
"YFWHNAWEOZTIPI-DIPNUNPCSA-L"
],
"lipidmaps":[
"LMGP10010028"
],
"metanetx.chemical":[
"MNXM51279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15526",
"cpd26148"
],
"slm":[
"000025492"
]
}
},
{
"id":"trnaphe_c",
"name":"TRNA(Phe)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaphe_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaphe"
],
"biocyc":[
"META:PHE-tRNAs"
],
"chebi":[
"CHEBI:29184",
"CHEBI:15183",
"CHEBI:10687"
],
"kegg.compound":[
"C01648"
],
"metanetx.chemical":[
"MNXM90753"
],
"reactome.compound":[
"379767",
"379760"
],
"sabiork":[
"3847"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11919",
"cpd27782"
]
}
},
{
"id":"pa181_c",
"name":"1,2-dioctadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C39H71O8P1",
"notes":{
"original_bigg_ids":[
"pa181_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa181"
],
"metanetx.chemical":[
"MNXM90511"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15527"
]
}
},
{
"id":"preq1_c",
"name":"7-aminomethyl-7-deazaguanine",
"compartment":"c",
"charge":1,
"formula":"C7H10N5O",
"notes":{
"original_bigg_ids":[
"preq1_c"
]
},
"annotation":{
"bigg.metabolite":[
"preq1"
],
"biocyc":[
"META:7-AMINOMETHYL-7-DEAZAGUANINE"
],
"chebi":[
"CHEBI:45126",
"CHEBI:58703"
],
"hmdb":[
"HMDB11690"
],
"inchi_key":[
"MEYMBLGOKYDGLZ-UHFFFAOYSA-O"
],
"kegg.compound":[
"C16675"
],
"metanetx.chemical":[
"MNXM3198"
],
"sabiork":[
"28949"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19185"
]
}
},
{
"id":"trnapro_c",
"name":"TRNA(Pro)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnapro_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnapro"
],
"biocyc":[
"META:PRO-tRNAs"
],
"chebi":[
"CHEBI:15184",
"CHEBI:29177",
"CHEBI:10688"
],
"kegg.compound":[
"C01649"
],
"metanetx.chemical":[
"MNXM90667"
],
"reactome.compound":[
"379768",
"379775"
],
"sabiork":[
"3843"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11920"
]
}
},
{
"id":"prfp_c",
"name":"1-(5-Phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide",
"compartment":"c",
"charge":-4,
"formula":"C15H21N5O15P2",
"notes":{
"original_bigg_ids":[
"prfp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prfp"
],
"biocyc":[
"META:PHOSPHORIBOSYL-FORMIMINO-AICAR-P"
],
"chebi":[
"CHEBI:11194",
"CHEBI:75912",
"CHEBI:58435",
"CHEBI:2020",
"CHEBI:20528",
"CHEBI:18302"
],
"hmdb":[
"HMDB12277"
],
"inchi_key":[
"QOUSHGMTBIIAHR-KEOHHSTQSA-J"
],
"kegg.compound":[
"C04896"
],
"metanetx.chemical":[
"MNXM1397"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02979"
]
}
},
{
"id":"pac_c",
"name":"Phenylacetic acid",
"compartment":"c",
"charge":-1,
"formula":"C8H7O2",
"notes":{
"original_bigg_ids":[
"pac_c"
]
},
"annotation":{
"bigg.metabolite":[
"pac"
],
"biocyc":[
"META:Phenyl-Acetates",
"META:PHENYLACETATE"
],
"chebi":[
"CHEBI:25977",
"CHEBI:30745",
"CHEBI:18401",
"CHEBI:8085",
"CHEBI:44686",
"CHEBI:8082",
"CHEBI:25975",
"CHEBI:14779"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/11521328-dd32-4f4a-86ac-41b86da8aebe",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8a23d752-7ee5-4ea4-860e-1aa373d9f960",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/6a2504c1-4cb2-4549-927d-d43be0f32c2b"
],
"hmdb":[
"HMDB40733",
"HMDB00209",
"HMDB01326"
],
"inchi_key":[
"WLJVXDMOQOGPHL-UHFFFAOYSA-M"
],
"kegg.compound":[
"C15583",
"C00548",
"C07086"
],
"metanetx.chemical":[
"MNXM497"
],
"reactome.compound":[
"177153"
],
"sabiork":[
"9203",
"2090"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00430",
"cpd19069"
]
}
},
{
"id":"trnaser_c",
"name":"TRNA(Ser)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaser_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaser"
],
"biocyc":[
"META:SER-tRNAs"
],
"chebi":[
"CHEBI:15186",
"CHEBI:29179",
"CHEBI:10689"
],
"kegg.compound":[
"C01650"
],
"metanetx.chemical":[
"MNXM91028"
],
"reactome.compound":[
"379761",
"379762"
],
"sabiork":[
"3848"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11921",
"cpd28152"
]
}
},
{
"id":"palmACP_c",
"name":"Palmitoyl-ACP (n-C16:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C27H51N2O8PRS",
"notes":{
"original_bigg_ids":[
"palmACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"palmACP"
],
"metanetx.chemical":[
"MNXM2026"
],
"sbo":"SBO:0000247"
}
},
{
"id":"prlp_c",
"name":"5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide",
"compartment":"c",
"charge":-4,
"formula":"C15H21N5O15P2",
"notes":{
"original_bigg_ids":[
"prlp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prlp"
],
"biocyc":[
"META:PHOSPHORIBULOSYL-FORMIMINO-AICAR-P"
],
"chebi":[
"CHEBI:39698",
"CHEBI:21471",
"CHEBI:7090",
"CHEBI:58525",
"CHEBI:27735",
"CHEBI:12100"
],
"inchi_key":[
"BLKFNHOCHNCLII-GHVQHMAVSA-J"
],
"kegg.compound":[
"C04916"
],
"metanetx.chemical":[
"MNXM1408"
],
"sabiork":[
"7675"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02991"
]
}
},
{
"id":"pan4p_c",
"name":"Pantetheine 4'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C11H21N2O7PS",
"notes":{
"original_bigg_ids":[
"pan4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"pan4p"
],
"biocyc":[
"META:PHOSPHOPANTOTHEINE-GROUP",
"META:PANTETHEINE-P"
],
"chebi":[
"CHEBI:14738",
"CHEBI:11916",
"CHEBI:14736",
"CHEBI:7914",
"CHEBI:45012",
"CHEBI:14825",
"CHEBI:47942",
"CHEBI:14735",
"CHEBI:4222",
"CHEBI:29890",
"CHEBI:61723",
"CHEBI:16858",
"CHEBI:25844"
],
"hmdb":[
"HMDB01416"
],
"inchi_key":[
"JDMUPRLRUUMCTL-VIFPVBQESA-L"
],
"kegg.compound":[
"C01134"
],
"metanetx.chemical":[
"MNXM373"
],
"reactome.compound":[
"196767",
"8939005",
"6809358"
],
"sabiork":[
"3034"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27792",
"cpd00834"
]
}
},
{
"id":"trnathr_c",
"name":"TRNA(Thr)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnathr_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnathr"
],
"biocyc":[
"META:THR-tRNAs"
],
"chebi":[
"CHEBI:29180",
"CHEBI:10690",
"CHEBI:15187"
],
"kegg.compound":[
"C01651"
],
"metanetx.chemical":[
"MNXM90883"
],
"reactome.compound":[
"379791",
"379749"
],
"sabiork":[
"3803"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11922",
"cpd28225"
]
}
},
{
"id":"trnatrp_c",
"name":"TRNA(Trp)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnatrp_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnatrp"
],
"biocyc":[
"META:TRP-tRNAs"
],
"chebi":[
"CHEBI:10691",
"CHEBI:15188",
"CHEBI:29181"
],
"kegg.compound":[
"C01652"
],
"metanetx.chemical":[
"MNXM90755"
],
"reactome.compound":[
"379774",
"379763"
],
"sabiork":[
"3839"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28239",
"cpd11923"
]
}
},
{
"id":"trnatyr_c",
"name":"TRNA(Tyr)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnatyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnatyr"
],
"biocyc":[
"META:TYR-tRNAs"
],
"chebi":[
"CHEBI:10692",
"CHEBI:15189",
"CHEBI:29182"
],
"kegg.compound":[
"C00787"
],
"metanetx.chemical":[
"MNXM90668"
],
"reactome.compound":[
"379756",
"379743"
],
"sabiork":[
"3838"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11751"
]
}
},
{
"id":"pro__L_c",
"name":"L-Proline",
"compartment":"c",
"formula":"C5H9NO2",
"notes":{
"original_bigg_ids":[
"pro_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"pro__L"
],
"biocyc":[
"META:PRO"
],
"chebi":[
"CHEBI:26271",
"CHEBI:60039",
"CHEBI:45100",
"CHEBI:13154",
"CHEBI:184637",
"CHEBI:17203",
"CHEBI:21373",
"CHEBI:32862",
"CHEBI:32872",
"CHEBI:45040",
"CHEBI:32871",
"CHEBI:6286",
"CHEBI:32864",
"CHEBI:42067",
"CHEBI:45159",
"CHEBI:58054"
],
"hmdb":[
"HMDB00162"
],
"inchi_key":[
"ONIBWKKTOPOVIA-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00148",
"C16435"
],
"kegg.drug":[
"D00035"
],
"metanetx.chemical":[
"MNXM114"
],
"reactome.compound":[
"352033",
"379717",
"113538"
],
"sabiork":[
"25536",
"82"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00129",
"cpd15140"
]
}
},
{
"id":"pant__R_c",
"name":"(R)-Pantoate",
"compartment":"c",
"charge":-1,
"formula":"C6H11O4",
"notes":{
"original_bigg_ids":[
"pant_R_c"
]
},
"annotation":{
"bigg.metabolite":[
"pant__R"
],
"biocyc":[
"META:L-PANTOATE"
],
"chebi":[
"CHEBI:18696",
"CHEBI:350",
"CHEBI:18695",
"CHEBI:15980",
"CHEBI:18697",
"CHEBI:44662",
"CHEBI:11006",
"CHEBI:14737"
],
"inchi_key":[
"OTOIIPJYVQJATP-BYPYZUCNSA-M"
],
"kegg.compound":[
"C00522"
],
"metanetx.chemical":[
"MNXM593"
],
"sabiork":[
"21325",
"5130"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00408"
]
}
},
{
"id":"trnaval_c",
"name":"TRNA(Val)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaval_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaval"
],
"biocyc":[
"META:VAL-tRNAs"
],
"chebi":[
"CHEBI:10694",
"CHEBI:15191",
"CHEBI:29183"
],
"kegg.compound":[
"C01653"
],
"metanetx.chemical":[
"MNXM90885"
],
"reactome.compound":[
"379735",
"379793"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11924",
"cpd28318"
]
}
},
{
"id":"pap_c",
"name":"Adenosine 3',5'-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C10H11N5O10P2",
"notes":{
"original_bigg_ids":[
"pap_c"
]
},
"annotation":{
"bigg.metabolite":[
"pap"
],
"biocyc":[
"META:3-5-ADP"
],
"chebi":[
"CHEBI:17985",
"CHEBI:13735",
"CHEBI:22240",
"CHEBI:2475",
"CHEBI:58343"
],
"hmdb":[
"HMDB01468",
"HMDB00061"
],
"inchi_key":[
"WHTCPDAXWFLDIH-KQYNXXCUSA-J"
],
"kegg.compound":[
"C00054"
],
"metanetx.chemical":[
"MNXM45"
],
"reactome.compound":[
"158466",
"742343",
"8942170",
"6809360"
],
"sabiork":[
"1672"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00045"
]
}
},
{
"id":"protrna_c",
"name":"L-Prolyl-tRNA(Pro)",
"compartment":"c",
"charge":1,
"formula":"C5H8NOR",
"notes":{
"original_bigg_ids":[
"protrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"protrna"
],
"chebi":[
"CHEBI:6287",
"CHEBI:13155",
"CHEBI:29154"
],
"kegg.compound":[
"C02702"
],
"metanetx.chemical":[
"MNXM247"
],
"reactome.compound":[
"379746",
"379745"
],
"sabiork":[
"3863"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12164"
]
}
},
{
"id":"prpp_c",
"name":"5-Phospho-alpha-D-ribose 1-diphosphate",
"compartment":"c",
"charge":-5,
"formula":"C5H8O14P3",
"notes":{
"original_bigg_ids":[
"prpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prpp"
],
"biocyc":[
"META:PRPP"
],
"chebi":[
"CHEBI:2121",
"CHEBI:20625",
"CHEBI:12160",
"CHEBI:45139",
"CHEBI:12159",
"CHEBI:17111",
"CHEBI:58017"
],
"hmdb":[
"HMDB00280",
"HMDB62643"
],
"inchi_key":[
"PQGCEDQWHSBAJP-TXICZTDVSA-I"
],
"kegg.compound":[
"C00119"
],
"metanetx.chemical":[
"MNXM91"
],
"reactome.compound":[
"73566"
],
"sabiork":[
"1305"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00103"
]
}
},
{
"id":"trp__L_c",
"name":"L-Tryptophan",
"compartment":"c",
"formula":"C11H12N2O2",
"notes":{
"original_bigg_ids":[
"trp_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"trp__L"
],
"biocyc":[
"META:TRP"
],
"chebi":[
"CHEBI:13178",
"CHEBI:27163",
"CHEBI:6310",
"CHEBI:9769",
"CHEBI:32728",
"CHEBI:16828",
"CHEBI:27897",
"CHEBI:21407",
"CHEBI:64554",
"CHEBI:46125",
"CHEBI:57912",
"CHEBI:32704",
"CHEBI:46086",
"CHEBI:45988",
"CHEBI:184633",
"CHEBI:46225",
"CHEBI:32727",
"CHEBI:32702"
],
"hmdb":[
"HMDB00929",
"HMDB30396"
],
"inchi_key":[
"QIVBCDIJIAJPQS-VIFPVBQESA-N"
],
"kegg.compound":[
"C00806",
"C00078"
],
"kegg.drug":[
"D00020"
],
"metanetx.chemical":[
"MNXM94"
],
"reactome.compound":[
"379709",
"352006",
"29500"
],
"sabiork":[
"2164",
"85"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19007",
"cpd00065"
]
}
},
{
"id":"ps120_c",
"name":"Phosphatidylserine (didodecanoyl, n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C30H57N1O10P1",
"notes":{
"original_bigg_ids":[
"ps120_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps120"
],
"metanetx.chemical":[
"MNXM7659"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pdx5p_c",
"name":"Pyridoxine 5'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H10NO6P",
"notes":{
"original_bigg_ids":[
"pdx5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"pdx5p"
],
"biocyc":[
"META:PYRIDOXINE-5P"
],
"chebi":[
"CHEBI:26430",
"CHEBI:28803",
"CHEBI:45202",
"CHEBI:58589",
"CHEBI:8672"
],
"hmdb":[
"HMDB01319"
],
"inchi_key":[
"WHOMFKWHIQZTHY-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00627"
],
"metanetx.chemical":[
"MNXM454"
],
"reactome.compound":[
"964952"
],
"sabiork":[
"1684"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00478"
]
}
},
{
"id":"trptrna_c",
"name":"L-Tryptophanyl-tRNA(Trp)",
"compartment":"c",
"charge":1,
"formula":"C11H11N2OR",
"notes":{
"original_bigg_ids":[
"trptrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"trptrna"
],
"chebi":[
"CHEBI:6312",
"CHEBI:13179",
"CHEBI:29159"
],
"kegg.compound":[
"C03512"
],
"metanetx.chemical":[
"MNXM89804"
],
"reactome.compound":[
"379765",
"379759"
],
"sabiork":[
"3859"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12336"
]
}
},
{
"id":"pe120_c",
"name":"Phosphatidylethanolamine (didodecanoyl, n-C12:0)",
"compartment":"c",
"formula":"C29H58N1O8P1",
"notes":{
"original_bigg_ids":[
"pe120_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe120"
],
"biocyc":[
"META:CPD-17088"
],
"lipidmaps":[
"LMGP02010098"
],
"metanetx.chemical":[
"MNXM2858"
],
"sbo":"SBO:0000247",
"slm":[
"000034904"
]
}
},
{
"id":"ps140_c",
"name":"Phosphatidylserine (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C34H65N1O10P1",
"notes":{
"original_bigg_ids":[
"ps140_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps140"
],
"metanetx.chemical":[
"MNXM7665"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tsul_c",
"name":"Thiosulfate",
"compartment":"c",
"charge":-2,
"formula":"O3S2",
"notes":{
"original_bigg_ids":[
"tsul_c"
]
},
"annotation":{
"bigg.metabolite":[
"tsul"
],
"biocyc":[
"META:S2O3"
],
"chebi":[
"CHEBI:33540",
"CHEBI:33539",
"CHEBI:9569",
"CHEBI:26977",
"CHEBI:33541",
"CHEBI:15242",
"CHEBI:16094",
"CHEBI:29279",
"CHEBI:45922",
"CHEBI:5587",
"CHEBI:33542"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/32b1f2ad-32ba-4271-9c86-f4bb1c35e35d"
],
"hmdb":[
"HMDB00257",
"HMDB60293"
],
"inchi_key":[
"DHCDFWKWKRSZHF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05529",
"C00320"
],
"metanetx.chemical":[
"MNXM323"
],
"reactome.compound":[
"1614595"
],
"sabiork":[
"5043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00268"
]
}
},
{
"id":"ps141_c",
"name":"Phosphatidylserine (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C34H61N1O10P1",
"notes":{
"original_bigg_ids":[
"ps141_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps141"
],
"metanetx.chemical":[
"MNXM7664"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pe140_c",
"name":"Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"formula":"C33H66N1O8P1",
"notes":{
"original_bigg_ids":[
"pe140_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe140"
],
"biocyc":[
"META:CPD-17087"
],
"hmdb":[
"HMDB08821",
"HMDB05313"
],
"lipidmaps":[
"LMGP02010352"
],
"metanetx.chemical":[
"MNXM2859"
],
"sbo":"SBO:0000247",
"slm":[
"000034918"
]
}
},
{
"id":"ttdca_c",
"name":"Tetradecanoate (n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C14H27O2",
"notes":{
"original_bigg_ids":[
"ttdca_c"
]
},
"annotation":{
"bigg.metabolite":[
"ttdca"
],
"metanetx.chemical":[
"MNXM162239"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pe141_c",
"name":"Phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"formula":"C33H62N1O8P1",
"notes":{
"original_bigg_ids":[
"pe141_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe141"
],
"metanetx.chemical":[
"MNXM3693"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ps160_c",
"name":"Phosphatidylserine (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C38H73N1O10P1",
"notes":{
"original_bigg_ids":[
"ps160_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps160"
],
"biocyc":[
"META:CPD-12817"
],
"chebi":[
"CHEBI:84523",
"CHEBI:111515"
],
"hmdb":[
"HMDB00614"
],
"inchi_key":[
"KLFKZIQAIPDJCW-GPOMZPHUSA-M"
],
"lipidmaps":[
"LMGP03010029"
],
"metanetx.chemical":[
"MNXM32181"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23595",
"cpd15555"
],
"slm":[
"000005400"
]
}
},
{
"id":"ttdcap_c",
"name":"Tetradecanoyl-phosphate (n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C14H28O5P",
"notes":{
"original_bigg_ids":[
"ttdcap_c"
]
},
"annotation":{
"bigg.metabolite":[
"ttdcap"
],
"metanetx.chemical":[
"MNXM147613"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ps161_c",
"name":"Phosphatidylserine (dihexadec-9-enoyl, n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C38H69N1O10P1",
"notes":{
"original_bigg_ids":[
"ps161_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps161"
],
"metanetx.chemical":[
"MNXM7660"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pe160_c",
"name":"Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"formula":"C37H74N1O8P1",
"notes":{
"original_bigg_ids":[
"pe160_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe160"
],
"biocyc":[
"META:CPD-12819"
],
"chebi":[
"CHEBI:73005",
"CHEBI:73127"
],
"hmdb":[
"HMDB05317",
"HMDB08923"
],
"inchi_key":[
"SLKDGVPOSSLUAI-PGUFJCEWSA-N"
],
"lipidmaps":[
"LMGP02010037"
],
"metanetx.chemical":[
"MNXM32178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15531",
"cpd29054",
"cpd23597"
],
"slm":[
"000034909"
]
}
},
{
"id":"ttdcea_c",
"name":"Tetradecenoate (n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C14H25O2",
"notes":{
"original_bigg_ids":[
"ttdcea_c"
]
},
"annotation":{
"bigg.metabolite":[
"ttdcea"
],
"metanetx.chemical":[
"MNXM641"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pe161_c",
"name":"Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)",
"compartment":"c",
"formula":"C37H70N1O8P1",
"notes":{
"original_bigg_ids":[
"pe161_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe161"
],
"biocyc":[
"META:CPD-17086"
],
"hmdb":[
"HMDB05342",
"HMDB08957"
],
"lipidmaps":[
"LMGP02010108"
],
"metanetx.chemical":[
"MNXM71458"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29055"
],
"slm":[
"000034897"
]
}
},
{
"id":"ttdceap_c",
"name":"Tetradecanoyl-phosphate (n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C14H26O5P",
"notes":{
"original_bigg_ids":[
"ttdceap_c"
]
},
"annotation":{
"bigg.metabolite":[
"ttdceap"
],
"metanetx.chemical":[
"MNXM147614"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pe180_c",
"name":"Phosphatidylethanolamine (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"formula":"C41H82N1O8P1",
"notes":{
"original_bigg_ids":[
"pe180_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe180"
],
"biocyc":[
"META:CPD-12818"
],
"chebi":[
"CHEBI:47765",
"CHEBI:44886",
"CHEBI:39934",
"CHEBI:47766"
],
"hmdb":[
"HMDB05327",
"HMDB08991"
],
"inchi_key":[
"LVNGJLRDBYCPGB-LDLOPFEMSA-N"
],
"lipidmaps":[
"LMGP02010097"
],
"metanetx.chemical":[
"MNXM31536"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15533",
"cpd23596"
],
"slm":[
"000034913"
]
}
},
{
"id":"ps180_c",
"name":"Phosphatidylserine (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C42H81N1O10P1",
"notes":{
"original_bigg_ids":[
"ps180_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps180"
],
"biocyc":[
"META:CPD-12816"
],
"chebi":[
"CHEBI:84519"
],
"hmdb":[
"HMDB12378"
],
"inchi_key":[
"TZCPCKNHXULUIY-RGULYWFUSA-M"
],
"lipidmaps":[
"LMGP03010036"
],
"metanetx.chemical":[
"MNXM75116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15557",
"cpd23594"
],
"slm":[
"000005403"
]
}
},
{
"id":"tungs_c",
"name":"Tungstate",
"compartment":"c",
"charge":-2,
"formula":"O4W1",
"notes":{
"original_bigg_ids":[
"tungs_c"
]
},
"annotation":{
"bigg.metabolite":[
"tungs"
],
"biocyc":[
"META:TUNGSTATE"
],
"chebi":[
"CHEBI:36271",
"CHEBI:30518",
"CHEBI:36272",
"CHEBI:46497",
"CHEBI:46502"
],
"inchi_key":[
"PBYZMCDFOULPGH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C20679"
],
"metanetx.chemical":[
"MNXM88308"
],
"sabiork":[
"18862"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15574"
]
}
},
{
"id":"ps181_c",
"name":"Phosphatidylserine (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C42H77N1O10P1",
"notes":{
"original_bigg_ids":[
"ps181_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps181"
],
"metanetx.chemical":[
"MNXM7662"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pser__L_c",
"name":"O-Phospho-L-serine",
"compartment":"c",
"charge":-2,
"formula":"C3H6NO6P",
"notes":{
"original_bigg_ids":[
"pser_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"pser__L"
],
"biocyc":[
"META:3-P-SERINE"
],
"chebi":[
"CHEBI:57524",
"CHEBI:12718",
"CHEBI:15811",
"CHEBI:21966",
"CHEBI:7692"
],
"hmdb":[
"HMDB00272"
],
"inchi_key":[
"BZQFBWGGLXLEPQ-REOHCLBHSA-L"
],
"kegg.compound":[
"C01005"
],
"metanetx.chemical":[
"MNXM379"
],
"reactome.compound":[
"936706"
],
"sabiork":[
"2212"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00738"
]
}
},
{
"id":"pe181_c",
"name":"Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"formula":"C41H78N1O8P1",
"notes":{
"original_bigg_ids":[
"pe181_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe181"
],
"metanetx.chemical":[
"MNXM2150"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pep_c",
"name":"Phosphoenolpyruvate",
"compartment":"c",
"charge":-3,
"formula":"C3H2O6P",
"notes":{
"original_bigg_ids":[
"pep_c"
]
},
"annotation":{
"bigg.metabolite":[
"pep"
],
"biocyc":[
"META:PHOSPHO-ENOL-PYRUVATE"
],
"chebi":[
"CHEBI:18021",
"CHEBI:44894",
"CHEBI:26054",
"CHEBI:14812",
"CHEBI:26055",
"CHEBI:8147",
"CHEBI:58702",
"CHEBI:44897"
],
"hmdb":[
"HMDB00263"
],
"inchi_key":[
"DTBNBXWJWCWCIK-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00074"
],
"metanetx.chemical":[
"MNXM73"
],
"reactome.compound":[
"372364",
"29492"
],
"sabiork":[
"32"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00061"
]
}
},
{
"id":"pg120_c",
"name":"Phosphatidylglycerol (didodecanoyl, n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C30H58O10P1",
"notes":{
"original_bigg_ids":[
"pg120_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg120"
],
"metanetx.chemical":[
"MNXM1771"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tyr__L_c",
"name":"L-Tyrosine",
"compartment":"c",
"formula":"C9H11NO3",
"notes":{
"original_bigg_ids":[
"tyr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"tyr__L"
],
"biocyc":[
"META:TYR"
],
"chebi":[
"CHEBI:6313",
"CHEBI:21411",
"CHEBI:46070",
"CHEBI:9800",
"CHEBI:32786",
"CHEBI:15277",
"CHEBI:32761",
"CHEBI:32784",
"CHEBI:46161",
"CHEBI:13181",
"CHEBI:32760",
"CHEBI:58315",
"CHEBI:32762",
"CHEBI:27176",
"CHEBI:17895",
"CHEBI:18186",
"CHEBI:32785"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/974bd9b7-53fb-48cd-aaf3-6bd3196c0365"
],
"hmdb":[
"HMDB00647",
"HMDB00158"
],
"inchi_key":[
"OUYCCCASQSFEME-QMMMGPOBSA-N"
],
"kegg.compound":[
"C00082",
"C01536"
],
"kegg.drug":[
"D00022"
],
"metanetx.chemical":[
"MNXM76"
],
"reactome.compound":[
"379710",
"5668567",
"352030",
"29506"
],
"sabiork":[
"84",
"2291"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30745",
"cpd00069"
]
}
},
{
"id":"pg140_c",
"name":"Phosphatidylglycerol (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C34H66O10P1",
"notes":{
"original_bigg_ids":[
"pg140_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg140"
],
"biocyc":[
"META:CPD-19677"
],
"chebi":[
"CHEBI:60723"
],
"inchi_key":[
"BPHQZTVXXXJVHI-AJQTZOPKSA-M"
],
"lipidmaps":[
"LMGP04010005"
],
"metanetx.chemical":[
"MNXM51019"
],
"sbo":"SBO:0000247",
"slm":[
"000041313"
]
}
},
{
"id":"pt2coa_c",
"name":"Pent-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C26H38N7O17P3S",
"notes":{
"original_bigg_ids":[
"pt2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"pt2coa"
],
"chebi":[
"CHEBI:83324",
"CHEBI:86160",
"CHEBI:27962",
"CHEBI:86441",
"CHEBI:25870",
"CHEBI:7970"
],
"hmdb":[
"HMDB62230"
],
"inchi_key":[
"GJSFKOVNQYGUGN-JQVZGLFNSA-J"
],
"kegg.compound":[
"C02451"
],
"lipidmaps":[
"LMFA07050361"
],
"metanetx.chemical":[
"MNXM20340"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01613"
]
}
},
{
"id":"ptcoa_c",
"name":"Pentanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C26H40N7O17P3S",
"notes":{
"original_bigg_ids":[
"ptcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ptcoa"
],
"biocyc":[
"META:PENTANOYLCOA-CPD"
],
"chebi":[
"CHEBI:25893",
"CHEBI:7981",
"CHEBI:15536",
"CHEBI:57389",
"CHEBI:14752"
],
"hmdb":[
"HMDB13037"
],
"inchi_key":[
"RXUATCUKICAIOA-ZMHDXICWSA-J"
],
"kegg.compound":[
"C00888"
],
"lipidmaps":[
"LMFA07050362"
],
"metanetx.chemical":[
"MNXM2854"
],
"sabiork":[
"5299"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00660"
],
"slm":[
"000389752"
]
}
},
{
"id":"tyrtrna_c",
"name":"L-Tyrosyl-tRNA(Tyr)",
"compartment":"c",
"charge":1,
"formula":"C9H10NO2R",
"notes":{
"original_bigg_ids":[
"tyrtrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"tyrtrna"
],
"chebi":[
"CHEBI:13185",
"CHEBI:6318",
"CHEBI:29161"
],
"kegg.compound":[
"C02839"
],
"metanetx.chemical":[
"MNXM89822"
],
"reactome.compound":[
"379755",
"379785"
],
"sabiork":[
"3851"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12194"
]
}
},
{
"id":"ptrc_c",
"name":"Putrescine",
"compartment":"c",
"charge":2,
"formula":"C4H14N2",
"notes":{
"original_bigg_ids":[
"ptrc_c"
]
},
"annotation":{
"bigg.metabolite":[
"ptrc"
],
"biocyc":[
"META:PUTRESCINE"
],
"chebi":[
"CHEBI:8650",
"CHEBI:17148",
"CHEBI:45092",
"CHEBI:26405",
"CHEBI:14972",
"CHEBI:326268"
],
"hmdb":[
"HMDB01414",
"HMDB60243"
],
"inchi_key":[
"KIDHWZJUCRJVML-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00134"
],
"metanetx.chemical":[
"MNXM118"
],
"reactome.compound":[
"29610",
"141350"
],
"sabiork":[
"1941"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00118",
"cpd12215"
]
}
},
{
"id":"pg141_c",
"name":"Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C34H62O10P1",
"notes":{
"original_bigg_ids":[
"pg141_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg141"
],
"metanetx.chemical":[
"MNXM2029"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg160_c",
"name":"Phosphatidylglycerol (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C38H74O10P1",
"notes":{
"original_bigg_ids":[
"pg160_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg160"
],
"biocyc":[
"META:CPD-8260"
],
"chebi":[
"CHEBI:73205",
"CHEBI:72829",
"CHEBI:75159"
],
"hmdb":[
"HMDB10570"
],
"inchi_key":[
"BIABMEZBCHDPBV-MPQUPPDSSA-M"
],
"lipidmaps":[
"LMGP04010986"
],
"metanetx.chemical":[
"MNXM32179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15538",
"cpd25117"
],
"slm":[
"000000812"
]
}
},
{
"id":"u23ga_c",
"name":"UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine",
"compartment":"c",
"charge":-2,
"formula":"C43H75N3O20P2",
"notes":{
"original_bigg_ids":[
"u23ga_c"
]
},
"annotation":{
"bigg.metabolite":[
"u23ga"
],
"biocyc":[
"META:OH-MYRISTOYL"
],
"chebi":[
"CHEBI:78847",
"CHEBI:82845"
],
"inchi_key":[
"KOJCFMYSTWNMQW-RUAJDYCTSA-L"
],
"kegg.compound":[
"C04652"
],
"metanetx.chemical":[
"MNXM1199"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02835"
]
}
},
{
"id":"pg161_c",
"name":"Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C38H70O10P1",
"notes":{
"original_bigg_ids":[
"pg161_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg161"
],
"biocyc":[
"META:CPD0-2330"
],
"inchi_key":[
"GHQNERCMPIDAAU-ANXSUKRNSA-M"
],
"metanetx.chemical":[
"MNXM75101"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15539",
"cpd26463"
]
}
},
{
"id":"pydx5p_c",
"name":"Pyridoxal 5'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H8NO6P",
"notes":{
"original_bigg_ids":[
"pydx5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"pydx5p"
],
"biocyc":[
"META:PYRIDOXAL_PHOSPHATE"
],
"chebi":[
"CHEBI:8668",
"CHEBI:597326",
"CHEBI:45145",
"CHEBI:18405",
"CHEBI:14977",
"CHEBI:26424",
"CHEBI:234571",
"CHEBI:358848"
],
"hmdb":[
"HMDB01491"
],
"inchi_key":[
"NGVDGCNFYWLIFO-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00018"
],
"metanetx.chemical":[
"MNXM161"
],
"reactome.compound":[
"29390"
],
"sabiork":[
"1271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00016"
]
}
},
{
"id":"u23gn_c",
"name":"UDP-2,3-bis(3-hydroxytetradecanoyl)glucosediamine",
"compartment":"c",
"charge":-2,
"formula":"C43H76N4O19P2",
"notes":{
"original_bigg_ids":[
"u23gn_c"
]
},
"annotation":{
"bigg.metabolite":[
"u23gn"
],
"metanetx.chemical":[
"MNXM147617"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pyr_c",
"name":"Pyruvate",
"compartment":"c",
"charge":-1,
"formula":"C3H3O3",
"notes":{
"original_bigg_ids":[
"pyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"pyr"
],
"biocyc":[
"META:PYRUVATE"
],
"chebi":[
"CHEBI:26462",
"CHEBI:26466",
"CHEBI:8685",
"CHEBI:32816",
"CHEBI:45253",
"CHEBI:14987",
"CHEBI:15361"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ccc99777-54dc-42d4-a97e-009b780d3905",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc01020e-8c7e-4087-9f56-cf8c962b7437"
],
"hmdb":[
"HMDB00243"
],
"inchi_key":[
"LCTONWCANYUPML-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00022"
],
"lipidmaps":[
"LMFA01060077"
],
"metanetx.chemical":[
"MNXM23"
],
"reactome.compound":[
"1130930",
"5357717",
"113557",
"29398",
"389680"
],
"sabiork":[
"33"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00020"
]
}
},
{
"id":"pg180_c",
"name":"Phosphatidylglycerol (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C42H82O10P1",
"notes":{
"original_bigg_ids":[
"pg180_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg180"
],
"biocyc":[
"META:CPD-12822"
],
"hmdb":[
"HMDB10602"
],
"inchi_key":[
"FVJZSBGHRPJMMA-IOLBBIBUSA-M"
],
"lipidmaps":[
"LMGP04010038"
],
"metanetx.chemical":[
"MNXM75102"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15540",
"cpd23600"
],
"slm":[
"000041308"
]
}
},
{
"id":"u3aga_c",
"name":"UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine",
"compartment":"c",
"charge":-2,
"formula":"C31H51N3O19P2",
"notes":{
"original_bigg_ids":[
"u3aga_c"
]
},
"annotation":{
"bigg.metabolite":[
"u3aga"
],
"biocyc":[
"META:UDP-OHMYR-ACETYLGLUCOSAMINE"
],
"chebi":[
"CHEBI:61537",
"CHEBI:61494"
],
"inchi_key":[
"TZSJGZGYQDNRRX-MPLCHSTDSA-L"
],
"kegg.compound":[
"C04738"
],
"metanetx.chemical":[
"MNXM2157"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02886"
]
}
},
{
"id":"pg181_c",
"name":"Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C42H78O10P1",
"notes":{
"original_bigg_ids":[
"pg181_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg181"
],
"biocyc":[
"META:CPD-18396"
],
"metanetx.chemical":[
"MNXM1773"
],
"sbo":"SBO:0000247",
"slm":[
"000041239"
]
}
},
{
"id":"quln_c",
"name":"Quinolinate",
"compartment":"c",
"charge":-2,
"formula":"C7H3NO4",
"notes":{
"original_bigg_ids":[
"quln_c"
]
},
"annotation":{
"bigg.metabolite":[
"quln"
],
"biocyc":[
"META:QUINOLINATE"
],
"chebi":[
"CHEBI:14975",
"CHEBI:29959",
"CHEBI:46832",
"CHEBI:44529",
"CHEBI:8663",
"CHEBI:46828",
"CHEBI:46833",
"CHEBI:26418",
"CHEBI:132942",
"CHEBI:26417",
"CHEBI:16675"
],
"hmdb":[
"HMDB00232"
],
"inchi_key":[
"GJAWHXHKYYXBSV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C03722"
],
"metanetx.chemical":[
"MNXM555"
],
"reactome.compound":[
"197238"
],
"sabiork":[
"6817"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02333"
]
}
},
{
"id":"u3agn_c",
"name":"UDP-3-N-(3-hydroxytetradecanoyl)-2-N-acetylglucosediamine",
"compartment":"c",
"charge":-2,
"formula":"C31H52N4O18P2",
"notes":{
"original_bigg_ids":[
"u3agn_c"
]
},
"annotation":{
"bigg.metabolite":[
"u3agn"
],
"metanetx.chemical":[
"MNXM148533"
],
"sbo":"SBO:0000247"
}
},
{
"id":"r1p_c",
"name":"Alpha-D-Ribose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"r1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"r1p"
],
"biocyc":[
"META:RIBOSE-1P"
],
"chebi":[
"CHEBI:16300",
"CHEBI:12330",
"CHEBI:45482",
"CHEBI:22412",
"CHEBI:10269",
"CHEBI:57720",
"CHEBI:45429",
"CHEBI:12329"
],
"hmdb":[
"HMDB01489"
],
"inchi_key":[
"YXJDFQJKERBOBM-TXICZTDVSA-L"
],
"kegg.compound":[
"C00620"
],
"metanetx.chemical":[
"MNXM295"
],
"reactome.compound":[
"112016"
],
"sabiork":[
"1651",
"1337"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00475"
]
}
},
{
"id":"pgp120_c",
"name":"Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)",
"compartment":"c",
"charge":-3,
"formula":"C30H57O13P2",
"notes":{
"original_bigg_ids":[
"pgp120_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp120"
],
"metanetx.chemical":[
"MNXM5266"
],
"sbo":"SBO:0000247"
}
},
{
"id":"u3hga_c",
"name":"UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine",
"compartment":"c",
"charge":-1,
"formula":"C29H50N3O18P2",
"notes":{
"original_bigg_ids":[
"u3hga_c"
]
},
"annotation":{
"bigg.metabolite":[
"u3hga"
],
"biocyc":[
"META:UDP-OHMYR-GLUCOSAMINE"
],
"chebi":[
"CHEBI:27392",
"CHEBI:58510",
"CHEBI:71573",
"CHEBI:71619",
"CHEBI:9807",
"CHEBI:22095"
],
"inchi_key":[
"ZFPNNOXCEDQJQS-SSVOXRMNSA-M"
],
"kegg.compound":[
"C06022"
],
"metanetx.chemical":[
"MNXM2036"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03584"
]
}
},
{
"id":"pgp140_c",
"name":"Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"charge":-3,
"formula":"C34H65O13P2",
"notes":{
"original_bigg_ids":[
"pgp140_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp140"
],
"metanetx.chemical":[
"MNXM5272"
],
"sbo":"SBO:0000247"
}
},
{
"id":"r3mmal_c",
"name":"D-erythro-3-Methylmalate",
"compartment":"c",
"charge":-2,
"formula":"C5H6O5",
"notes":{
"original_bigg_ids":[
"r3mmal_c"
]
},
"annotation":{
"bigg.metabolite":[
"r3mmal"
],
"biocyc":[
"META:CPD-7066"
],
"chebi":[
"CHEBI:20924",
"CHEBI:4271",
"CHEBI:27394",
"CHEBI:58511"
],
"inchi_key":[
"NPYQJIHHTGFBLN-STHAYSLISA-L"
],
"kegg.compound":[
"C06032"
],
"metanetx.chemical":[
"MNXM2512"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03593",
"cpd24703"
]
}
},
{
"id":"u3hgn_c",
"name":"UDP-3-N-(3-hydroxytetradecanoyl)-glucose-2,3-diamine",
"compartment":"c",
"charge":-1,
"formula":"C29H51N4O17P2",
"notes":{
"original_bigg_ids":[
"u3hgn_c"
]
},
"annotation":{
"bigg.metabolite":[
"u3hgn"
],
"metanetx.chemical":[
"MNXM148534"
],
"sbo":"SBO:0000247"
}
},
{
"id":"r5p_c",
"name":"Alpha-D-Ribose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"r5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"r5p"
],
"biocyc":[
"META:CPD-15318"
],
"chebi":[
"CHEBI:18189",
"CHEBI:22413",
"CHEBI:12331",
"CHEBI:10270"
],
"inchi_key":[
"KTVPXOYAKDPRHY-AIHAYLRMSA-L"
],
"kegg.compound":[
"C03736"
],
"metanetx.chemical":[
"MNXM15900"
],
"sabiork":[
"1473"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19028"
]
}
},
{
"id":"pgp141_c",
"name":"Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"charge":-3,
"formula":"C34H61O13P2",
"notes":{
"original_bigg_ids":[
"pgp141_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp141"
],
"metanetx.chemical":[
"MNXM5271"
],
"sbo":"SBO:0000247"
}
},
{
"id":"uLa4fn_c",
"name":"Undecaprenyl phosphate-4-amino-4-formyl-L-arabinose",
"compartment":"c",
"charge":-1,
"formula":"C61H99N1O8P1",
"notes":{
"original_bigg_ids":[
"uLa4fn_c"
]
},
"annotation":{
"bigg.metabolite":[
"uLa4fn"
],
"biocyc":[
"META:CPD0-2153"
],
"inchi_key":[
"YYVYMEXYAGAGTM-MOVGJWTDSA-M"
],
"metanetx.chemical":[
"MNXM88505"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15575"
]
}
},
{
"id":"pgp160_c",
"name":"Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"charge":-3,
"formula":"C38H73O13P2",
"notes":{
"original_bigg_ids":[
"pgp160_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp160"
],
"biocyc":[
"META:CPD-12821"
],
"hmdb":[
"HMDB13472"
],
"inchi_key":[
"ONJBJMDJKLHMEK-MPQUPPDSSA-K"
],
"metanetx.chemical":[
"MNXM32180"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15545",
"cpd23599"
],
"slm":[
"000475616"
]
}
},
{
"id":"rdmbzi_c",
"name":"N1-(alpha-D-ribosyl)-5,6-dimethylbenzimidazole",
"compartment":"c",
"formula":"C14H18N2O4",
"notes":{
"original_bigg_ids":[
"rdmbzi_c"
]
},
"annotation":{
"bigg.metabolite":[
"rdmbzi"
],
"biocyc":[
"META:ALPHA-RIBAZOLE"
],
"chebi":[
"CHEBI:10329"
],
"hmdb":[
"HMDB11112"
],
"inchi_key":[
"HLRUKOJSWOKCPP-SYQHCUMBSA-N"
],
"kegg.compound":[
"C05775"
],
"metanetx.chemical":[
"MNXM1539"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03423"
]
}
},
{
"id":"uLa4n_c",
"name":"Undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose",
"compartment":"c",
"formula":"C60H100N1O7P1",
"notes":{
"original_bigg_ids":[
"uLa4n_c"
]
},
"annotation":{
"bigg.metabolite":[
"uLa4n"
],
"metanetx.chemical":[
"MNXM90891"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15576"
]
}
},
{
"id":"rdxo_c",
"name":"Rubredoxin oxidized",
"compartment":"c",
"charge":3,
"formula":"Fe1S0",
"notes":{
"original_bigg_ids":[
"rdxo_c"
]
},
"annotation":{
"bigg.metabolite":[
"rdxo"
],
"metanetx.chemical":[
"MNXM147609"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pgp161_c",
"name":"Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)",
"compartment":"c",
"charge":-3,
"formula":"C38H69O13P2",
"notes":{
"original_bigg_ids":[
"pgp161_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp161"
],
"biocyc":[
"META:CPD0-2230"
],
"inchi_key":[
"PTJJTQQVMKSSOK-WXUKJITCSA-K"
],
"metanetx.chemical":[
"MNXM75103"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15546",
"cpd26451"
]
}
},
{
"id":"pgp180_c",
"name":"Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"charge":-3,
"formula":"C42H81O13P2",
"notes":{
"original_bigg_ids":[
"pgp180_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp180"
],
"biocyc":[
"META:CPD-12820"
],
"hmdb":[
"HMDB13504"
],
"inchi_key":[
"UZNYMWWMHBZMLI-IOLBBIBUSA-K"
],
"metanetx.chemical":[
"MNXM75104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23598",
"cpd15547"
],
"slm":[
"000475620"
]
}
},
{
"id":"uaagmda_c",
"name":"Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala",
"compartment":"c",
"charge":-4,
"formula":"C95H152N8O28P2",
"notes":{
"original_bigg_ids":[
"uaagmda_c"
]
},
"annotation":{
"bigg.metabolite":[
"uaagmda"
],
"biocyc":[
"META:C6"
],
"chebi":[
"CHEBI:28138",
"CHEBI:61388",
"CHEBI:9870",
"CHEBI:27200"
],
"inchi_key":[
"OXJNZXDFVLDLEI-MBCYCBSHSA-J"
],
"kegg.compound":[
"C05898"
],
"kegg.glycan":[
"G10555"
],
"metanetx.chemical":[
"MNXM722781"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03495"
]
}
},
{
"id":"pgp181_c",
"name":"Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"charge":-3,
"formula":"C42H77O13P2",
"notes":{
"original_bigg_ids":[
"pgp181_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp181"
],
"metanetx.chemical":[
"MNXM5269"
],
"sbo":"SBO:0000247"
}
},
{
"id":"rdxr_c",
"name":"Rubredoxin reduced",
"compartment":"c",
"charge":2,
"formula":"Fe1S0",
"notes":{
"original_bigg_ids":[
"rdxr_c"
]
},
"annotation":{
"bigg.metabolite":[
"rdxr"
],
"metanetx.chemical":[
"MNXM147610"
],
"sbo":"SBO:0000247"
}
},
{
"id":"uaccg_c",
"name":"UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine",
"compartment":"c",
"charge":-3,
"formula":"C20H26N3O19P2",
"notes":{
"original_bigg_ids":[
"uaccg_c"
]
},
"annotation":{
"bigg.metabolite":[
"uaccg"
],
"biocyc":[
"META:UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE"
],
"chebi":[
"CHEBI:68507",
"CHEBI:16435",
"CHEBI:22110",
"CHEBI:13467",
"CHEBI:13466",
"CHEBI:68483",
"CHEBI:57771",
"CHEBI:9818"
],
"inchi_key":[
"BEGZZYPUNCJHKP-DBYWSUQTSA-K"
],
"kegg.compound":[
"C04631"
],
"metanetx.chemical":[
"MNXM1688"
],
"sabiork":[
"7450"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02820"
]
}
},
{
"id":"rib__D_c",
"name":"D-Ribose",
"compartment":"c",
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"rib_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"rib__D"
],
"biocyc":[
"META:D-Ribofuranose",
"META:D-Ribopyranose"
],
"chebi":[
"CHEBI:13011",
"CHEBI:16988",
"CHEBI:46999",
"CHEBI:47013",
"CHEBI:47006",
"CHEBI:4233",
"CHEBI:21078"
],
"hmdb":[
"HMDB00283"
],
"inchi_key":[
"HMFHBZSHGGEWLO-SOOFDHNKSA-N"
],
"kegg.compound":[
"C21057",
"C00121"
],
"metanetx.chemical":[
"MNXM242"
],
"sabiork":[
"1653"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00105"
]
}
},
{
"id":"phaccoa_c",
"name":"Phenylacetyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C29H38N7O17P3S",
"notes":{
"original_bigg_ids":[
"phaccoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"phaccoa"
],
"biocyc":[
"META:CPD-207"
],
"chebi":[
"CHEBI:25980",
"CHEBI:8086",
"CHEBI:14780",
"CHEBI:15537",
"CHEBI:57390"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc20356c-1455-4c1c-8260-b86508a89a3d"
],
"hmdb":[
"HMDB06503"
],
"inchi_key":[
"ZIGIFDRJFZYEEQ-CECATXLMSA-J"
],
"kegg.compound":[
"C00582"
],
"metanetx.chemical":[
"MNXM502"
],
"reactome.compound":[
"177137"
],
"sabiork":[
"2106"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00452"
]
}
},
{
"id":"uacgam_c",
"name":"UDP-N-acetyl-D-glucosamine",
"compartment":"c",
"charge":-2,
"formula":"C17H25N3O17P2",
"notes":{
"original_bigg_ids":[
"uacgam_c"
]
},
"annotation":{
"bigg.metabolite":[
"uacgam"
],
"biocyc":[
"META:UDP-N-ACETYL-D-GLUCOSAMINE"
],
"chebi":[
"CHEBI:13473",
"CHEBI:22115",
"CHEBI:9823",
"CHEBI:13475",
"CHEBI:13456",
"CHEBI:13476",
"CHEBI:46243",
"CHEBI:57705",
"CHEBI:46287",
"CHEBI:16264"
],
"hmdb":[
"HMDB00290",
"HMDB62760"
],
"inchi_key":[
"LFTYTUAZOPRMMI-CFRASDGPSA-L"
],
"kegg.compound":[
"C00043"
],
"kegg.glycan":[
"G10610"
],
"lipidmaps":[
"LMSL01010002"
],
"metanetx.chemical":[
"MNXM47"
],
"reactome.compound":[
"162756",
"914003",
"3499326"
],
"sabiork":[
"1925"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00037"
]
}
},
{
"id":"phe__L_c",
"name":"L-Phenylalanine",
"compartment":"c",
"formula":"C9H11NO2",
"notes":{
"original_bigg_ids":[
"phe_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"phe__L"
],
"biocyc":[
"META:PHE"
],
"chebi":[
"CHEBI:21370",
"CHEBI:32505",
"CHEBI:13151",
"CHEBI:32504",
"CHEBI:32486",
"CHEBI:44885",
"CHEBI:58095",
"CHEBI:45079",
"CHEBI:28044",
"CHEBI:6282",
"CHEBI:32487",
"CHEBI:8089",
"CHEBI:76052",
"CHEBI:17295",
"CHEBI:25984",
"CHEBI:44851"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/447fdbbc-919c-4e8d-aed3-c0533f3e6047",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/c1b55d6f-7946-4f39-9dc6-ac0f47865b8b"
],
"hmdb":[
"HMDB00159",
"HMDB00612"
],
"inchi_key":[
"COLNVLDHVKWLRT-QMMMGPOBSA-N"
],
"kegg.compound":[
"C00079",
"C02057"
],
"kegg.drug":[
"D00021"
],
"metanetx.chemical":[
"MNXM97"
],
"reactome.compound":[
"29502",
"379701",
"351993"
],
"sabiork":[
"2365",
"83"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00066",
"cpd01400"
]
}
},
{
"id":"ribflv_c",
"name":"Riboflavin C17H20N4O6",
"compartment":"c",
"formula":"C17H20N4O6",
"notes":{
"original_bigg_ids":[
"ribflv_c"
]
},
"annotation":{
"bigg.metabolite":[
"ribflv"
],
"biocyc":[
"META:RIBOFLAVIN"
],
"chebi":[
"CHEBI:57986",
"CHEBI:17015",
"CHEBI:8843",
"CHEBI:45214",
"CHEBI:15044",
"CHEBI:529204",
"CHEBI:27299"
],
"hmdb":[
"HMDB00244"
],
"inchi_key":[
"AUNGANRZJHBGPY-SCRDCRAPSA-M"
],
"kegg.compound":[
"C00255"
],
"kegg.drug":[
"D00050"
],
"metanetx.chemical":[
"MNXM270"
],
"reactome.compound":[
"3165253",
"196931"
],
"sabiork":[
"1996"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00220"
]
}
},
{
"id":"uacgamo_c",
"name":"UDP-2-acetamido-2-deoxy-alpha-D-ribo-hexopyranos-3-ulose",
"compartment":"c",
"charge":-2,
"formula":"C17H23N3O17P2",
"notes":{
"original_bigg_ids":[
"uacgamo_c"
]
},
"annotation":{
"bigg.metabolite":[
"uacgamo"
],
"metanetx.chemical":[
"MNXM148531"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ru5p__D_c",
"name":"D-Ribulose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"ru5p_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"ru5p__D"
],
"biocyc":[
"META:RIBULOSE-5P"
],
"chebi":[
"CHEBI:40192",
"CHEBI:21088",
"CHEBI:17363",
"CHEBI:26572",
"CHEBI:13040",
"CHEBI:37455",
"CHEBI:58121",
"CHEBI:13018",
"CHEBI:4243"
],
"hmdb":[
"HMDB02033",
"HMDB02694",
"HMDB00618"
],
"inchi_key":[
"FNZLKVNUWIIPSJ-UHNVWZDZSA-L"
],
"kegg.compound":[
"C00199"
],
"metanetx.chemical":[
"MNXM145"
],
"reactome.compound":[
"29732"
],
"sabiork":[
"22814",
"1313"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00171"
]
}
},
{
"id":"pheme_c",
"name":"Protoheme C34H30FeN4O4",
"compartment":"c",
"charge":-2,
"formula":"C34H30FeN4O4",
"notes":{
"original_bigg_ids":[
"pheme_c"
]
},
"annotation":{
"bigg.metabolite":[
"pheme"
],
"biocyc":[
"META:PROTOHEME"
],
"chebi":[
"CHEBI:60344",
"CHEBI:26355",
"CHEBI:17627",
"CHEBI:5651",
"CHEBI:14957"
],
"inchi_key":[
"KABFMIBPWCXCRK-RGGAHWMASA-J"
],
"kegg.compound":[
"C00032"
],
"metanetx.chemical":[
"MNXM249"
],
"reactome.compound":[
"917877",
"71185",
"189444"
],
"sbo":"SBO:0000247"
}
},
{
"id":"uacgnn_c",
"name":"UDP-2-N-acetylglucose-2,3-diamine",
"compartment":"c",
"charge":-1,
"formula":"C17H27N4O16P2",
"notes":{
"original_bigg_ids":[
"uacgnn_c"
]
},
"annotation":{
"bigg.metabolite":[
"uacgnn"
],
"metanetx.chemical":[
"MNXM148532"
],
"sbo":"SBO:0000247"
}
},
{
"id":"phenol_c",
"name":"Phenol",
"compartment":"c",
"formula":"C6H6O",
"notes":{
"original_bigg_ids":[
"phenol_c"
]
},
"annotation":{
"bigg.metabolite":[
"phenol"
],
"biocyc":[
"META:PHENOL"
],
"chebi":[
"CHEBI:43543",
"CHEBI:25966",
"CHEBI:50526",
"CHEBI:14777",
"CHEBI:8071",
"CHEBI:15882"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/3ba82340-8170-438e-a316-6d10935afeaa",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/83ab06b8-c17a-4882-bedd-667c38a40894",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/971dde96-4136-4e71-a986-5334007766b7",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a30eb8dd-0b96-4290-82ae-512efd6d36b7",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2b281578-ddae-4648-a03d-3922fb588bb0"
],
"hmdb":[
"HMDB00228"
],
"inchi_key":[
"ISWSIDIOOBJBQZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00146",
"C15584"
],
"kegg.drug":[
"D00033"
],
"metanetx.chemical":[
"MNXM320"
],
"reactome.compound":[
"29630",
"158858"
],
"sabiork":[
"1947"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00127"
]
}
},
{
"id":"s7p_c",
"name":"Sedoheptulose 7-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C7H13O10P",
"notes":{
"original_bigg_ids":[
"s7p_c"
]
},
"annotation":{
"bigg.metabolite":[
"s7p"
],
"biocyc":[
"META:D-SEDOHEPTULOSE-7-P"
],
"chebi":[
"CHEBI:4244",
"CHEBI:15073",
"CHEBI:15721",
"CHEBI:26621",
"CHEBI:9083",
"CHEBI:15074",
"CHEBI:57483"
],
"hmdb":[
"HMDB01068",
"HMDB62754"
],
"inchi_key":[
"JDTUMPKOJBQPKX-GBNDHIKLSA-L"
],
"kegg.compound":[
"C05382"
],
"metanetx.chemical":[
"MNXM271"
],
"reactome.compound":[
"29882"
],
"sabiork":[
"1618",
"1325"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00238"
]
}
},
{
"id":"uacmam_c",
"name":"UDP-N-acetyl-D-mannosamine",
"compartment":"c",
"charge":-2,
"formula":"C17H25N3O17P2",
"notes":{
"original_bigg_ids":[
"uacmam_c"
]
},
"annotation":{
"bigg.metabolite":[
"uacmam"
],
"biocyc":[
"META:UDP-MANNAC"
],
"chebi":[
"CHEBI:13474",
"CHEBI:22116",
"CHEBI:57715",
"CHEBI:13457",
"CHEBI:68678",
"CHEBI:68623",
"CHEBI:9824",
"CHEBI:16287"
],
"hmdb":[
"HMDB13112"
],
"inchi_key":[
"LFTYTUAZOPRMMI-ZYQOOJPVSA-L"
],
"kegg.compound":[
"C01170"
],
"kegg.glycan":[
"G11112"
],
"metanetx.chemical":[
"MNXM722740"
],
"sabiork":[
"2263"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00861"
]
}
},
{
"id":"sbzcoa_c",
"name":"O-Succinylbenzoyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C32H39N7O20P3S",
"notes":{
"original_bigg_ids":[
"sbzcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"sbzcoa"
],
"biocyc":[
"META:CPD-6972"
],
"chebi":[
"CHEBI:15509",
"CHEBI:12700",
"CHEBI:57364",
"CHEBI:12836",
"CHEBI:19779",
"CHEBI:1279"
],
"inchi_key":[
"AVOVYFCDODUXLY-HSJNEKGZSA-I"
],
"kegg.compound":[
"C03160"
],
"metanetx.chemical":[
"MNXM1132"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02021"
]
}
},
{
"id":"phetrna_c",
"name":"L-Phenylalanyl-tRNA(Phe)",
"compartment":"c",
"charge":1,
"formula":"C9H10NOR",
"notes":{
"original_bigg_ids":[
"phetrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"phetrna"
],
"chebi":[
"CHEBI:29153",
"CHEBI:13152",
"CHEBI:6283"
],
"kegg.compound":[
"C03511"
],
"metanetx.chemical":[
"MNXM89802"
],
"reactome.compound":[
"379789",
"379792"
],
"sabiork":[
"3867"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12335"
]
}
},
{
"id":"uacmamu_c",
"name":"UDP-N-acetyl-D-mannosaminouronate",
"compartment":"c",
"charge":-3,
"formula":"C17H22N3O18P2",
"notes":{
"original_bigg_ids":[
"uacmamu_c"
]
},
"annotation":{
"bigg.metabolite":[
"uacmamu"
],
"biocyc":[
"META:UDP-MANNACA"
],
"chebi":[
"CHEBI:70731",
"CHEBI:22117",
"CHEBI:58578",
"CHEBI:70738",
"CHEBI:28581",
"CHEBI:9825"
],
"inchi_key":[
"DZOGQXKQLXAPND-XHUKORKBSA-K"
],
"kegg.compound":[
"C06240"
],
"metanetx.chemical":[
"MNXM97052"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03732"
]
}
},
{
"id":"phitcoa_c",
"name":"E-Phenylitaconyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C32H39N7O19P3S",
"notes":{
"original_bigg_ids":[
"phitcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"phitcoa"
],
"biocyc":[
"META:E-PHENYLITACONYL-COA"
],
"chebi":[
"CHEBI:10948",
"CHEBI:58519",
"CHEBI:27639",
"CHEBI:4731",
"CHEBI:21124"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4fe65802-13d6-459d-b0d8-2433807cf4d3"
],
"hmdb":[
"HMDB12223"
],
"inchi_key":[
"CIZCKPNGZPENDV-RUCZCKOISA-I"
],
"kegg.compound":[
"C09818"
],
"metanetx.chemical":[
"MNXM4923"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd06710"
]
}
},
{
"id":"scl_c",
"name":"Sirohydrochlorin",
"compartment":"c",
"charge":-7,
"formula":"C42H39N4O16",
"notes":{
"original_bigg_ids":[
"scl_c"
]
},
"annotation":{
"bigg.metabolite":[
"scl"
],
"biocyc":[
"META:SIROHYDROCHLORIN"
],
"chebi":[
"CHEBI:58351",
"CHEBI:9167",
"CHEBI:18023",
"CHEBI:15090",
"CHEBI:26691"
],
"inchi_key":[
"KWIZRXMMFRBUML-AHGFGAHVSA-F"
],
"kegg.compound":[
"C05778"
],
"metanetx.chemical":[
"MNXM863"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03426"
]
}
},
{
"id":"uagmda_c",
"name":"Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine",
"compartment":"c",
"charge":-4,
"formula":"C87H139N7O23P2",
"notes":{
"original_bigg_ids":[
"uagmda_c"
]
},
"annotation":{
"bigg.metabolite":[
"uagmda"
],
"biocyc":[
"META:C5"
],
"chebi":[
"CHEBI:61387",
"CHEBI:61543"
],
"inchi_key":[
"PNWZQTONLRRPST-KLDRQJOASA-J"
],
"kegg.compound":[
"C05897"
],
"kegg.glycan":[
"G10556"
],
"metanetx.chemical":[
"MNXM2264"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03494"
]
}
},
{
"id":"sectrna_c",
"name":"L-Selenocysteinyl-tRNA(Sec)",
"compartment":"c",
"charge":1,
"formula":"C3H6NOSeR",
"notes":{
"original_bigg_ids":[
"sectrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"sectrna"
],
"kegg.compound":[
"C06482"
],
"metanetx.chemical":[
"MNXM91632"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15563"
]
}
},
{
"id":"phom_c",
"name":"O-Phospho-L-homoserine",
"compartment":"c",
"charge":-2,
"formula":"C4H8NO6P",
"notes":{
"original_bigg_ids":[
"phom_c"
]
},
"annotation":{
"bigg.metabolite":[
"phom"
],
"biocyc":[
"META:O-PHOSPHO-L-HOMOSERINE"
],
"chebi":[
"CHEBI:21965",
"CHEBI:7691",
"CHEBI:15961",
"CHEBI:57590",
"CHEBI:12717",
"CHEBI:12693"
],
"hmdb":[
"HMDB03484",
"HMDB06495",
"HMDB62692"
],
"inchi_key":[
"FXDNYOANAXWZHG-VKHMYHEASA-L"
],
"kegg.compound":[
"C01102"
],
"metanetx.chemical":[
"MNXM1334"
],
"sabiork":[
"2246"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00809"
]
}
},
{
"id":"uama_c",
"name":"UDP-N-acetylmuramoyl-L-alanine",
"compartment":"c",
"charge":-3,
"formula":"C23H33N4O20P2",
"notes":{
"original_bigg_ids":[
"uama_c"
]
},
"annotation":{
"bigg.metabolite":[
"uama"
],
"biocyc":[
"META:CPD0-1456"
],
"chebi":[
"CHEBI:22123",
"CHEBI:57953",
"CHEBI:13478",
"CHEBI:84726",
"CHEBI:9830",
"CHEBI:83898",
"CHEBI:16932",
"CHEBI:13459"
],
"inchi_key":[
"NTMMCWJNQNKACG-KBKUWGQMSA-K"
],
"kegg.compound":[
"C01212"
],
"metanetx.chemical":[
"MNXM1953"
],
"sabiork":[
"2265"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29609",
"cpd00890"
]
}
},
{
"id":"phpyr_c",
"name":"Phenylpyruvate",
"compartment":"c",
"charge":-1,
"formula":"C9H7O3",
"notes":{
"original_bigg_ids":[
"phpyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"phpyr"
],
"biocyc":[
"META:PHENYL-PYRUVATE"
],
"chebi":[
"CHEBI:14784",
"CHEBI:26007",
"CHEBI:18005",
"CHEBI:12821"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1a2c1780-502b-43c6-8d45-759953ea5e07"
],
"hmdb":[
"HMDB00205",
"HMDB31629",
"HMDB01237"
],
"inchi_key":[
"BTNMPGBKDVTSJY-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00166"
],
"metanetx.chemical":[
"MNXM162242"
],
"sabiork":[
"1957"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00143"
]
}
},
{
"id":"uamag_c",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate",
"compartment":"c",
"charge":-4,
"formula":"C28H39N5O23P2",
"notes":{
"original_bigg_ids":[
"uamag_c"
]
},
"annotation":{
"bigg.metabolite":[
"uamag"
],
"biocyc":[
"META:UDP-AA-GLUTAMATE"
],
"chebi":[
"CHEBI:16970",
"CHEBI:13461",
"CHEBI:13482",
"CHEBI:9832",
"CHEBI:46143",
"CHEBI:22125",
"CHEBI:57968",
"CHEBI:83900"
],
"inchi_key":[
"OJZCATPXPWFLHF-HPUCEMLMSA-J"
],
"kegg.compound":[
"C00692"
],
"metanetx.chemical":[
"MNXM955"
],
"sabiork":[
"5185"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00525"
]
}
},
{
"id":"phthr_c",
"name":"O-Phospho-4-hydroxy-L-threonine",
"compartment":"c",
"charge":-2,
"formula":"C4H8NO7P",
"notes":{
"original_bigg_ids":[
"phthr_c"
]
},
"annotation":{
"bigg.metabolite":[
"phthr"
],
"biocyc":[
"META:4-PHOSPHONOOXY-THREONINE"
],
"chebi":[
"CHEBI:58452",
"CHEBI:21963",
"CHEBI:18336",
"CHEBI:11945",
"CHEBI:7690",
"CHEBI:59459"
],
"hmdb":[
"HMDB06802"
],
"inchi_key":[
"FKHAKIJOKDGEII-GBXIJSLDSA-L"
],
"kegg.compound":[
"C06055"
],
"metanetx.chemical":[
"MNXM759"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22119",
"cpd03607"
]
}
},
{
"id":"uamr_c",
"name":"UDP-N-acetylmuramate",
"compartment":"c",
"charge":-3,
"formula":"C20H28N3O19P2",
"notes":{
"original_bigg_ids":[
"uamr_c"
]
},
"annotation":{
"bigg.metabolite":[
"uamr"
],
"biocyc":[
"META:UDP-N-ACETYLMURAMATE"
],
"chebi":[
"CHEBI:70757",
"CHEBI:9827",
"CHEBI:22120",
"CHEBI:58309",
"CHEBI:13477",
"CHEBI:70765",
"CHEBI:13458",
"CHEBI:17882"
],
"inchi_key":[
"NQBRVZNDBBMBLJ-MQTLHLSBSA-K"
],
"kegg.compound":[
"C01050"
],
"metanetx.chemical":[
"MNXM722733"
],
"sabiork":[
"2230"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00773"
]
}
},
{
"id":"pi_c",
"name":"Phosphate",
"compartment":"c",
"charge":-2,
"formula":"HO4P",
"notes":{
"original_bigg_ids":[
"pi_c"
]
},
"annotation":{
"bigg.metabolite":[
"pi"
],
"biocyc":[
"META:Pi",
"META:CPD-16459",
"META:PHOSPHATE-GROUP"
],
"chebi":[
"CHEBI:26078",
"CHEBI:18367",
"CHEBI:29139",
"CHEBI:39739",
"CHEBI:43470",
"CHEBI:35780",
"CHEBI:43474",
"CHEBI:26020",
"CHEBI:45024",
"CHEBI:39745",
"CHEBI:29137",
"CHEBI:14791",
"CHEBI:7793"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/db5219ee-60cb-4370-b066-340c9faf069c",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/84684967-eade-48d4-b25d-c4aede0a0836",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/ad82c39b-2edb-4953-b971-79a2d2ea6e26",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/aac01fea-4223-49c1-8b12-cd50f11ebfc8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c581b2ce-6238-45de-abc0-60ca8d47ed04"
],
"hmdb":[
"HMDB02105",
"HMDB00973",
"HMDB01429",
"HMDB02142",
"HMDB05947"
],
"inchi_key":[
"NBIIXXVUZAFLBC-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00009"
],
"kegg.drug":[
"D05467"
],
"metanetx.chemical":[
"MNXM9"
],
"reactome.compound":[
"5228339",
"113550",
"8851513",
"113551",
"109277",
"29372",
"8851226",
"113548"
],
"sabiork":[
"36"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27787",
"cpd00009"
]
}
},
{
"id":"udcpdp_c",
"name":"Undecaprenyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C55H89O7P2",
"notes":{
"original_bigg_ids":[
"udcpdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpdp"
],
"biocyc":[
"META:CPD-9649"
],
"chebi":[
"CHEBI:27192",
"CHEBI:53042",
"CHEBI:17047",
"CHEBI:9863",
"CHEBI:57995",
"CHEBI:15284"
],
"hmdb":[
"HMDB01469"
],
"inchi_key":[
"NTXGVHCCXVHYCL-RDQGWRCRSA-K"
],
"lipidmaps":[
"LMPR03030004"
],
"metanetx.chemical":[
"MNXM5043"
],
"sabiork":[
"1757"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25775"
]
}
},
{
"id":"pimACP_c",
"name":"Pimeloyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C18H31N2O10PRS",
"notes":{
"original_bigg_ids":[
"pimACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"pimACP"
],
"biocyc":[
"META:Pimeloyl-ACPs"
],
"kegg.compound":[
"C19845"
],
"metanetx.chemical":[
"MNXM12695"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21087"
]
}
},
{
"id":"udcpp_c",
"name":"Undecaprenyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C55H89O4P",
"notes":{
"original_bigg_ids":[
"udcpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpp"
],
"biocyc":[
"META:UNDECAPRENYL-P"
],
"chebi":[
"CHEBI:15286",
"CHEBI:57654",
"CHEBI:15285",
"CHEBI:9864",
"CHEBI:16141"
],
"inchi_key":[
"UFPHFKCTOZIAFY-RDQGWRCRSA-L"
],
"kegg.compound":[
"C00348"
],
"lipidmaps":[
"LMPR03020006"
],
"metanetx.chemical":[
"MNXM251"
],
"sabiork":[
"2026"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00286"
]
}
},
{
"id":"pmeACP_c",
"name":"Pimeloyl-[acyl-carrier protein] methyl ester",
"compartment":"c",
"charge":-1,
"formula":"C19H33N2O10PRS",
"notes":{
"original_bigg_ids":[
"pmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"pmeACP"
],
"biocyc":[
"META:Pimeloyl-ACP-methyl-esters"
],
"kegg.compound":[
"C19846"
],
"metanetx.chemical":[
"MNXM12694"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21088"
]
}
},
{
"id":"udp_c",
"name":"UDP C9H11N2O12P2",
"compartment":"c",
"charge":-3,
"formula":"C9H11N2O12P2",
"notes":{
"original_bigg_ids":[
"udp_c"
]
},
"annotation":{
"bigg.metabolite":[
"udp"
],
"biocyc":[
"META:UDP"
],
"chebi":[
"CHEBI:13445",
"CHEBI:9802",
"CHEBI:58223",
"CHEBI:46402",
"CHEBI:17659",
"CHEBI:27230"
],
"hmdb":[
"HMDB00295"
],
"inchi_key":[
"XCCTYIAWTASOJW-XVFCMESISA-K"
],
"kegg.compound":[
"C00015"
],
"kegg.glycan":[
"G10619"
],
"metanetx.chemical":[
"MNXM17"
],
"reactome.compound":[
"110096",
"111814",
"205687",
"158602"
],
"sabiork":[
"1269"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00014"
]
}
},
{
"id":"pmtcoa_c",
"name":"Palmitoyl-CoA (n-C16:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C37H62N7O17P3S",
"notes":{
"original_bigg_ids":[
"pmtcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"pmtcoa"
],
"biocyc":[
"META:PALMITYL-COA"
],
"chebi":[
"CHEBI:14397",
"CHEBI:57379",
"CHEBI:24543",
"CHEBI:7898",
"CHEBI:15525",
"CHEBI:14732"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/683c12f9-18f4-4439-a718-0877aa11b9ae"
],
"hmdb":[
"HMDB01338",
"HMDB59623"
],
"inchi_key":[
"MNBKLUUYKPBKDU-BBECNAHFSA-J"
],
"kegg.compound":[
"C00154"
],
"lipidmaps":[
"LMFA07050360"
],
"metanetx.chemical":[
"MNXM88"
],
"reactome.compound":[
"5358339"
],
"sabiork":[
"1310"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00134"
],
"slm":[
"000000383"
]
}
},
{
"id":"udpLa4fn_c",
"name":"Uridine 5''-diphospho-{beta}-4-deoxy-4-formamido-L-arabinose",
"compartment":"c",
"charge":-2,
"formula":"C15H21N3O16P2",
"notes":{
"original_bigg_ids":[
"udpLa4fn_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpLa4fn"
],
"biocyc":[
"META:UDP-L-ARA4-FORMYL-N"
],
"chebi":[
"CHEBI:47027",
"CHEBI:58709"
],
"inchi_key":[
"QGYFHZBDXXNYAX-RTXATJJPSA-L"
],
"kegg.compound":[
"C16154"
],
"metanetx.chemical":[
"MNXM1390"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14875"
]
}
},
{
"id":"pnto__R_c",
"name":"(R)-Pantothenate",
"compartment":"c",
"charge":-1,
"formula":"C9H16NO5",
"notes":{
"original_bigg_ids":[
"pnto_R_c"
]
},
"annotation":{
"bigg.metabolite":[
"pnto__R"
],
"biocyc":[
"META:PANTOTHENATE"
],
"chebi":[
"CHEBI:29032",
"CHEBI:44679",
"CHEBI:25846",
"CHEBI:16454",
"CHEBI:18700",
"CHEBI:11008",
"CHEBI:18701",
"CHEBI:46905",
"CHEBI:14739",
"CHEBI:7916"
],
"hmdb":[
"HMDB00210",
"HMDB62717"
],
"inchi_key":[
"GHOKWGTUZJEAQD-ZETCQYMHSA-M"
],
"kegg.compound":[
"C00864"
],
"kegg.drug":[
"D07413"
],
"metanetx.chemical":[
"MNXM364"
],
"reactome.compound":[
"199192",
"196820"
],
"sabiork":[
"5286"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00644"
]
}
},
{
"id":"selcys_c",
"name":"Selenocysteine",
"compartment":"c",
"formula":"C3H7NO2Se",
"notes":{
"original_bigg_ids":[
"selcys_c"
]
},
"annotation":{
"bigg.metabolite":[
"selcys"
],
"biocyc":[
"META:L-SELENOCYSTEINE"
],
"chebi":[
"CHEBI:9093",
"CHEBI:32743",
"CHEBI:32754",
"CHEBI:49562",
"CHEBI:6298",
"CHEBI:21385",
"CHEBI:57843",
"CHEBI:32753",
"CHEBI:16633",
"CHEBI:13165",
"CHEBI:32752",
"CHEBI:32742",
"CHEBI:32744"
],
"hmdb":[
"HMDB03288"
],
"inchi_key":[
"ZKZBPNGNEQAJSX-REOHCLBHSA-N"
],
"kegg.compound":[
"C05688"
],
"metanetx.chemical":[
"MNXM727"
],
"sabiork":[
"2832",
"2415"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03389",
"cpd27371",
"cpd01608"
]
}
},
{
"id":"udpLa4n_c",
"name":"Uridine 5''-diphospho-{beta}-4-deoxy-4-amino-L-arabinose",
"compartment":"c",
"charge":-1,
"formula":"C14H22N3O15P2",
"notes":{
"original_bigg_ids":[
"udpLa4n_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpLa4n"
],
"biocyc":[
"META:UDP-4-AMINO-4-DEOXY-L-ARABINOSE"
],
"chebi":[
"CHEBI:58708",
"CHEBI:47025"
],
"inchi_key":[
"GWBAKYBSWHQNMQ-IAZOVDBXSA-M"
],
"kegg.compound":[
"C16153"
],
"metanetx.chemical":[
"MNXM1786"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14874"
]
}
},
{
"id":"seln_c",
"name":"Selenide",
"compartment":"c",
"charge":-1,
"formula":"HSe",
"notes":{
"original_bigg_ids":[
"seln_c"
]
},
"annotation":{
"bigg.metabolite":[
"seln"
],
"biocyc":[
"META:SE-2",
"META:CPD-678"
],
"chebi":[
"CHEBI:9089",
"CHEBI:15076",
"CHEBI:24638",
"CHEBI:29317",
"CHEBI:30485",
"CHEBI:16503",
"CHEBI:47675"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1e71e9cf-365f-47bc-a252-f0e75f597818"
],
"hmdb":[
"HMDB11110"
],
"inchi_key":[
"SPVXKVOXSXTJOY-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01528"
],
"metanetx.chemical":[
"MNXM92652"
],
"reactome.compound":[
"5357660"
],
"sabiork":[
"5640"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28148",
"cpd01078"
]
}
},
{
"id":"polglu_c",
"name":"Poly-gamma-D-glutamate",
"compartment":"c",
"formula":"C5H7NO3",
"notes":{
"original_bigg_ids":[
"polglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"polglu"
],
"biocyc":[
"META:Poly-Gamma-D-Glutamate"
],
"chebi":[
"CHEBI:8296"
],
"kegg.compound":[
"C05723"
],
"metanetx.chemical":[
"MNXM54326"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpLa4o_c",
"name":"UDP-4-keto-pyranose",
"compartment":"c",
"charge":-2,
"formula":"C14H18N2O16P2",
"notes":{
"original_bigg_ids":[
"udpLa4o_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpLa4o"
],
"biocyc":[
"META:5-BETA-L-THREO-PENTAPYRANOSYL-4-ULOSE-"
],
"chebi":[
"CHEBI:58710",
"CHEBI:47028"
],
"inchi_key":[
"URJZIQLTPCJVMW-QNSCKLTRSA-L"
],
"kegg.compound":[
"C16155"
],
"metanetx.chemical":[
"MNXM1505"
],
"sabiork":[
"28100"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14876",
"cpd15578"
]
}
},
{
"id":"pp2coa_c",
"name":"Acrylyl CoA",
"compartment":"c",
"charge":-4,
"formula":"C24H34N7O17P3S",
"notes":{
"original_bigg_ids":[
"pp2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"pp2coa"
],
"biocyc":[
"META:ACRYLYL-COA"
],
"chebi":[
"CHEBI:26301",
"CHEBI:13722",
"CHEBI:8488",
"CHEBI:15513",
"CHEBI:57367"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/04437fe9-7f67-491c-bfba-52e7b1b43ed6"
],
"hmdb":[
"HMDB06507",
"HMDB02307"
],
"inchi_key":[
"POODSGUMUCVRTR-IEXPHMLFSA-J"
],
"kegg.compound":[
"C00894"
],
"lipidmaps":[
"LMFA07050282",
"LMFA07050283"
],
"metanetx.chemical":[
"MNXM650"
],
"sabiork":[
"2181"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00663"
]
}
},
{
"id":"selnp_c",
"name":"Selenophosphate",
"compartment":"c",
"charge":-1,
"formula":"H2O3PSe",
"notes":{
"original_bigg_ids":[
"selnp_c"
]
},
"annotation":{
"bigg.metabolite":[
"selnp"
],
"biocyc":[
"META:SEPO3"
],
"chebi":[
"CHEBI:9101",
"CHEBI:15078",
"CHEBI:64331",
"CHEBI:16144",
"CHEBI:58618",
"CHEBI:29269"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2375fd0c-e578-4771-9d3f-030d6dc30c7c"
],
"hmdb":[
"HMDB06407",
"HMDB03840"
],
"inchi_key":[
"JRPHGDYSKGJTKZ-UHFFFAOYSA-K"
],
"kegg.compound":[
"C05172"
],
"metanetx.chemical":[
"MNXM1339"
],
"reactome.compound":[
"5357690"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03078"
]
}
},
{
"id":"ppa_c",
"name":"Propionate (n-C3:0)",
"compartment":"c",
"charge":-1,
"formula":"C3H5O2",
"notes":{
"original_bigg_ids":[
"ppa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppa"
],
"metanetx.chemical":[
"MNXM162260"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpg_c",
"name":"UDPglucose",
"compartment":"c",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpg_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpg"
],
"biocyc":[
"META:CPD-12575"
],
"chebi":[
"CHEBI:13505",
"CHEBI:52249",
"CHEBI:9845",
"CHEBI:46228",
"CHEBI:46229",
"CHEBI:58367",
"CHEBI:13498",
"CHEBI:28532",
"CHEBI:42885",
"CHEBI:27234",
"CHEBI:18066",
"CHEBI:9895",
"CHEBI:58885",
"CHEBI:22103"
],
"hmdb":[
"HMDB60079"
],
"inchi_key":[
"HSCJRCZFDFQWRP-RDKQLNKOSA-L"
],
"kegg.compound":[
"C00029"
],
"kegg.glycan":[
"G10608"
],
"metanetx.chemical":[
"MNXM722710"
],
"reactome.compound":[
"173594",
"744227",
"29410"
],
"sabiork":[
"3918",
"1277"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00026",
"cpd28293"
]
}
},
{
"id":"ppal_c",
"name":"Propanal",
"compartment":"c",
"formula":"C3H6O",
"notes":{
"original_bigg_ids":[
"ppal_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppal"
],
"biocyc":[
"META:CPD-665"
],
"chebi":[
"CHEBI:45052",
"CHEBI:26281",
"CHEBI:17153",
"CHEBI:41359",
"CHEBI:8468",
"CHEBI:14898"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/de9fac76-182f-497b-8590-df8d5d8e2580",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/deea3c6f-bf3e-49db-ad6d-a405caf96fdd"
],
"hmdb":[
"HMDB03366"
],
"inchi_key":[
"NBBJYMSMWIIQGU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00479"
],
"metanetx.chemical":[
"MNXM821"
],
"sabiork":[
"2056"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00371"
]
}
},
{
"id":"ser__L_c",
"name":"L-Serine",
"compartment":"c",
"formula":"C3H7NO3",
"notes":{
"original_bigg_ids":[
"ser_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"ser__L"
],
"biocyc":[
"META:SER",
"META:Serines"
],
"chebi":[
"CHEBI:32845",
"CHEBI:17822",
"CHEBI:26648",
"CHEBI:45440",
"CHEBI:21387",
"CHEBI:32837",
"CHEBI:13167",
"CHEBI:45451",
"CHEBI:32836",
"CHEBI:15081",
"CHEBI:45590",
"CHEBI:35243",
"CHEBI:32846",
"CHEBI:17115",
"CHEBI:45597",
"CHEBI:33384",
"CHEBI:45677",
"CHEBI:6301",
"CHEBI:9116"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/207ebcd7-f859-4b01-8a69-9b99fb380595"
],
"hmdb":[
"HMDB00589",
"HMDB00187",
"HMDB62263"
],
"inchi_key":[
"MTCFGRXMJLQNBG-REOHCLBHSA-N"
],
"kegg.compound":[
"C00716",
"C00065"
],
"kegg.drug":[
"D00016"
],
"lipidmaps":[
"LMFA01100045"
],
"metanetx.chemical":[
"MNXM53"
],
"reactome.compound":[
"352002",
"379732",
"8932979",
"200736"
],
"sabiork":[
"2140",
"75"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28171",
"cpd00054",
"cpd30743"
]
}
},
{
"id":"udpgal_c",
"name":"UDPgalactose",
"compartment":"c",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpgal_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpgal"
],
"biocyc":[
"META:CPD-14553"
],
"chebi":[
"CHEBI:22100",
"CHEBI:9811",
"CHEBI:18307",
"CHEBI:42751",
"CHEBI:13495",
"CHEBI:66914",
"CHEBI:67119",
"CHEBI:13487",
"CHEBI:58439"
],
"hmdb":[
"HMDB62573",
"HMDB00302"
],
"inchi_key":[
"HSCJRCZFDFQWRP-ABVWGUQPSA-L"
],
"kegg.compound":[
"C00052"
],
"kegg.glycan":[
"G10609"
],
"metanetx.chemical":[
"MNXM89795"
],
"reactome.compound":[
"735682",
"29452"
],
"sabiork":[
"1283",
"3919"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00043",
"cpd30770"
]
}
},
{
"id":"sertrna_c",
"name":"L-Seryl-tRNA(Ser)",
"compartment":"c",
"charge":1,
"formula":"C3H6NO2R",
"notes":{
"original_bigg_ids":[
"sertrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"sertrna"
],
"kegg.compound":[
"C02553"
],
"metanetx.chemical":[
"MNXM90842"
],
"sabiork":[
"3868"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12132"
]
}
},
{
"id":"ppap_c",
"name":"Propanoyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C3H5O5P",
"notes":{
"original_bigg_ids":[
"ppap_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppap"
],
"biocyc":[
"META:PROPIONYL-P"
],
"chebi":[
"CHEBI:58933",
"CHEBI:8478"
],
"inchi_key":[
"FMNMEQSRDWIBFO-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02876"
],
"metanetx.chemical":[
"MNXM1499"
],
"sabiork":[
"1724"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01844"
]
}
},
{
"id":"udpgalur_c",
"name":"UDPgalacturonate",
"compartment":"c",
"formula":"C15H22N2O18P2",
"notes":{
"original_bigg_ids":[
"udpgalur_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpgalur"
],
"biocyc":[
"META:UDP-D-GALACTURONATE"
],
"chebi":[
"CHEBI:13488",
"CHEBI:9812",
"CHEBI:22101",
"CHEBI:16085",
"CHEBI:57635"
],
"hmdb":[
"HMDB12302"
],
"inchi_key":[
"HDYANYHVCAPMJV-GXNRKQDOSA-K"
],
"kegg.compound":[
"C00617"
],
"kegg.glycan":[
"G11110"
],
"metanetx.chemical":[
"MNXM1092"
],
"sabiork":[
"2116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00472"
]
}
},
{
"id":"ppbng_c",
"name":"Porphobilinogen",
"compartment":"c",
"charge":-1,
"formula":"C10H13N2O4",
"notes":{
"original_bigg_ids":[
"ppbng_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppbng"
],
"biocyc":[
"META:PORPHOBILINOGEN"
],
"chebi":[
"CHEBI:58126",
"CHEBI:8335",
"CHEBI:14867",
"CHEBI:26212",
"CHEBI:44832",
"CHEBI:17381"
],
"hmdb":[
"HMDB00245"
],
"inchi_key":[
"QSHWIQZFGQKFMA-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00931"
],
"metanetx.chemical":[
"MNXM554"
],
"reactome.compound":[
"189464"
],
"sabiork":[
"5324"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00689"
]
}
},
{
"id":"ppcoa_c",
"name":"Propanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C24H36N7O17P3S",
"notes":{
"original_bigg_ids":[
"ppcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppcoa"
],
"biocyc":[
"META:PROPIONYL-COA"
],
"chebi":[
"CHEBI:14907",
"CHEBI:57392",
"CHEBI:14904",
"CHEBI:26295",
"CHEBI:8479",
"CHEBI:15539"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4e032169-05c6-49aa-9422-d081d81bc1a6"
],
"hmdb":[
"HMDB01275"
],
"inchi_key":[
"QAQREVBBADEHPA-IEXPHMLFSA-J"
],
"kegg.compound":[
"C00100"
],
"lipidmaps":[
"LMFA07050364"
],
"metanetx.chemical":[
"MNXM86"
],
"reactome.compound":[
"192314",
"70843"
],
"sabiork":[
"1933"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12196",
"cpd00086"
],
"slm":[
"000389157"
]
}
},
{
"id":"ppgpp_c",
"name":"Guanosine 3',5'-bis(diphosphate)",
"compartment":"c",
"charge":-6,
"formula":"C10H11N5O17P4",
"notes":{
"original_bigg_ids":[
"ppgpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppgpp"
],
"biocyc":[
"META:GUANOSINE-5DP-3DP"
],
"chebi":[
"CHEBI:58215",
"CHEBI:14376",
"CHEBI:14380",
"CHEBI:77828",
"CHEBI:5565",
"CHEBI:24445",
"CHEBI:42747",
"CHEBI:17633"
],
"hmdb":[
"HMDB59638"
],
"inchi_key":[
"BUFLLCUFNHESEH-UUOKFMHZSA-I"
],
"kegg.compound":[
"C01228"
],
"metanetx.chemical":[
"MNXM1189"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00905"
]
}
},
{
"id":"sertrna_sec_c",
"name":"L-Seryl-tRNA(Sec)",
"compartment":"c",
"notes":{
"original_bigg_ids":[
"sertrna_sec__c"
]
},
"annotation":{
"bigg.metabolite":[
"sertrna_sec"
],
"chebi":[
"CHEBI:13170",
"CHEBI:74589"
],
"kegg.compound":[
"C06481"
],
"metanetx.chemical":[
"MNXM90476"
],
"reactome.compound":[
"5357730",
"5603447"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15565"
]
}
},
{
"id":"sheme_c",
"name":"Siroheme C42H36FeN4O16",
"compartment":"c",
"charge":-8,
"formula":"C42H36FeN4O16",
"notes":{
"original_bigg_ids":[
"sheme_c"
]
},
"annotation":{
"bigg.metabolite":[
"sheme"
],
"biocyc":[
"META:SIROHEME"
],
"chebi":[
"CHEBI:9166",
"CHEBI:28599",
"CHEBI:26690",
"CHEBI:60052"
],
"inchi_key":[
"DLKSSIHHLYNIKN-QIISWYHFSA-D"
],
"kegg.compound":[
"C00748"
],
"metanetx.chemical":[
"MNXM82173"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00557"
]
}
},
{
"id":"pphn_c",
"name":"Prephenate",
"compartment":"c",
"charge":-2,
"formula":"C10H8O6",
"notes":{
"original_bigg_ids":[
"pphn_c"
]
},
"annotation":{
"bigg.metabolite":[
"pphn"
],
"biocyc":[
"META:PREPHENATE"
],
"chebi":[
"CHEBI:8399",
"CHEBI:29934",
"CHEBI:45028",
"CHEBI:84387",
"CHEBI:57852",
"CHEBI:26257",
"CHEBI:26256",
"CHEBI:16666",
"CHEBI:14884"
],
"hmdb":[
"HMDB12283"
],
"inchi_key":[
"FPWMCUPFBRFMLH-XGAOUMNUSA-L"
],
"kegg.compound":[
"C00254"
],
"metanetx.chemical":[
"MNXM503"
],
"sabiork":[
"1995"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00219"
]
}
},
{
"id":"udpglcur_c",
"name":"UDP-D-glucuronate",
"compartment":"c",
"charge":-3,
"formula":"C15H19N2O18P2",
"notes":{
"original_bigg_ids":[
"udpglcur_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpglcur"
],
"biocyc":[
"META:UDP-GLUCURONATE"
],
"chebi":[
"CHEBI:46309",
"CHEBI:13489",
"CHEBI:13506",
"CHEBI:22104",
"CHEBI:58052",
"CHEBI:9846",
"CHEBI:17200"
],
"hmdb":[
"HMDB01384",
"HMDB00935"
],
"inchi_key":[
"HDYANYHVCAPMJV-LXQIFKJMSA-K"
],
"kegg.compound":[
"C00167"
],
"kegg.glycan":[
"G10612"
],
"metanetx.chemical":[
"MNXM87"
],
"reactome.compound":[
"174384",
"158601",
"1889970"
],
"sabiork":[
"22782",
"3916"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00144"
]
}
},
{
"id":"pphos_c",
"name":"Phenylphosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H5O4P",
"notes":{
"original_bigg_ids":[
"pphos_c"
]
},
"annotation":{
"bigg.metabolite":[
"pphos"
],
"biocyc":[
"META:PHENOL-PHOSPHATE"
],
"chebi":[
"CHEBI:26001",
"CHEBI:8073",
"CHEBI:37548",
"CHEBI:43167"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/bc01df65-8e19-4f32-9910-34ba3090b698",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e2851565-83af-497d-a11c-061f6c850db3"
],
"inchi_key":[
"CMPQUABWPXYYSH-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02734"
],
"metanetx.chemical":[
"MNXM5261"
],
"sabiork":[
"1722"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01773"
]
}
},
{
"id":"skm_c",
"name":"Shikimate",
"compartment":"c",
"charge":-1,
"formula":"C7H9O5",
"notes":{
"original_bigg_ids":[
"skm_c"
]
},
"annotation":{
"bigg.metabolite":[
"skm"
],
"biocyc":[
"META:SHIKIMATE"
],
"chebi":[
"CHEBI:15083",
"CHEBI:26664",
"CHEBI:9133",
"CHEBI:45740",
"CHEBI:26662",
"CHEBI:16119",
"CHEBI:26663",
"CHEBI:36208"
],
"hmdb":[
"HMDB03070"
],
"inchi_key":[
"JXOHGGNKMLTUBP-HSUXUTPPSA-M"
],
"kegg.compound":[
"C00493"
],
"metanetx.chemical":[
"MNXM602"
],
"reactome.compound":[
"964932"
],
"sabiork":[
"5117"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00383"
]
}
},
{
"id":"udpxyl_c",
"name":"UDP-D-xylose",
"compartment":"c",
"charge":-2,
"formula":"C14H20N2O16P2",
"notes":{
"original_bigg_ids":[
"udpxyl_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpxyl"
],
"biocyc":[
"META:UDP-D-XYLOSE"
],
"chebi":[
"CHEBI:9813",
"CHEBI:22105",
"CHEBI:59456",
"CHEBI:46260",
"CHEBI:16082",
"CHEBI:13490",
"CHEBI:57632"
],
"hmdb":[
"HMDB01018"
],
"inchi_key":[
"DQQDLYVHOTZLOR-OCIMBMBZSA-L"
],
"kegg.compound":[
"C00190"
],
"kegg.glycan":[
"G10613"
],
"metanetx.chemical":[
"MNXM284"
],
"reactome.compound":[
"742353",
"742361"
],
"sabiork":[
"3927",
"3926"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00163"
]
}
},
{
"id":"skm5p_c",
"name":"Shikimate 5-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C7H8O8P",
"notes":{
"original_bigg_ids":[
"skm5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"skm5p"
],
"biocyc":[
"META:SHIKIMATE-5P"
],
"chebi":[
"CHEBI:11886",
"CHEBI:15084",
"CHEBI:17052",
"CHEBI:9134",
"CHEBI:145989",
"CHEBI:20195"
],
"inchi_key":[
"QYOJSKGCWNAKGW-PBXRRBTRSA-K"
],
"kegg.compound":[
"C03175"
],
"metanetx.chemical":[
"MNXM1265"
],
"reactome.compound":[
"964859"
],
"sabiork":[
"1736"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02030"
]
}
},
{
"id":"ppi_c",
"name":"Diphosphate",
"compartment":"c",
"charge":-3,
"formula":"HO7P2",
"notes":{
"original_bigg_ids":[
"ppi_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppi"
],
"biocyc":[
"META:PYROPHOSPHATE-GROUP",
"META:PPI"
],
"chebi":[
"CHEBI:45212",
"CHEBI:45208",
"CHEBI:8683",
"CHEBI:45067",
"CHEBI:33018",
"CHEBI:29888",
"CHEBI:33017",
"CHEBI:33019",
"CHEBI:42009",
"CHEBI:13420",
"CHEBI:18361"
],
"hmdb":[
"HMDB00250"
],
"inchi_key":[
"XPPKVPWEQAFLFU-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00013"
],
"metanetx.chemical":[
"MNXM11"
],
"reactome.compound":[
"159450",
"113542",
"8878981",
"389593",
"113541",
"8938078",
"111294",
"2046049",
"6806656",
"1132084"
],
"sabiork":[
"1267"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00012",
"cpd27828"
]
}
},
{
"id":"ugmd_c",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate",
"compartment":"c",
"charge":-4,
"formula":"C35H51N7O26P2",
"notes":{
"original_bigg_ids":[
"ugmd_c"
]
},
"annotation":{
"bigg.metabolite":[
"ugmd"
],
"chebi":[
"CHEBI:9831",
"CHEBI:28639",
"CHEBI:13463",
"CHEBI:22124",
"CHEBI:58582",
"CHEBI:13460",
"CHEBI:13481",
"CHEBI:30905"
],
"inchi_key":[
"QUHLBZKCGUXHGP-AJVQVANPSA-J"
],
"metanetx.chemical":[
"MNXM162592"
],
"sabiork":[
"7640"
],
"sbo":"SBO:0000247"
}
},
{
"id":"so3_c",
"name":"Sulfite",
"compartment":"c",
"charge":-2,
"formula":"O3S",
"notes":{
"original_bigg_ids":[
"so3_c"
]
},
"annotation":{
"bigg.metabolite":[
"so3"
],
"biocyc":[
"META:H2SO3",
"META:HSO3",
"META:SO3"
],
"chebi":[
"CHEBI:15139",
"CHEBI:17137",
"CHEBI:45548",
"CHEBI:48854",
"CHEBI:26837",
"CHEBI:9344",
"CHEBI:5598",
"CHEBI:29214",
"CHEBI:13367",
"CHEBI:17359",
"CHEBI:33543"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/0382072e-fc0c-41a7-be8d-fce140ecf836",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2bf998e0-031f-4353-bbd0-d9c0af36460e"
],
"hmdb":[
"HMDB34829",
"HMDB03008",
"HMDB01033",
"HMDB00240"
],
"inchi_key":[
"LSNNMFCWUKXFEE-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00094",
"C11481"
],
"metanetx.chemical":[
"MNXM105630"
],
"sabiork":[
"3059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00081"
]
}
},
{
"id":"so4_c",
"name":"Sulfate",
"compartment":"c",
"charge":-2,
"formula":"O4S",
"notes":{
"original_bigg_ids":[
"so4_c"
]
},
"annotation":{
"bigg.metabolite":[
"so4"
],
"biocyc":[
"META:SULFATE",
"META:HSO4"
],
"chebi":[
"CHEBI:15135",
"CHEBI:45693",
"CHEBI:29199",
"CHEBI:9335",
"CHEBI:16189",
"CHEBI:45687",
"CHEBI:26836",
"CHEBI:45696"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/cf4fcd19-f2cb-4d92-aa67-323762e3b269"
],
"hmdb":[
"HMDB01448"
],
"inchi_key":[
"QAOWNCQODCNURD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00059"
],
"kegg.drug":[
"D05963"
],
"metanetx.chemical":[
"MNXM58"
],
"reactome.compound":[
"174375",
"1606845",
"1609649",
"1614584",
"427648"
],
"sabiork":[
"1759"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29301",
"cpd00048"
]
}
},
{
"id":"ugmda_c",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine",
"compartment":"c",
"charge":-4,
"formula":"C41H61N9O28P2",
"notes":{
"original_bigg_ids":[
"ugmda_c"
]
},
"annotation":{
"bigg.metabolite":[
"ugmda"
],
"biocyc":[
"META:C1"
],
"chebi":[
"CHEBI:61386",
"CHEBI:13462",
"CHEBI:9833",
"CHEBI:18199",
"CHEBI:22126"
],
"inchi_key":[
"IMWOXEZVYQDRDF-MCZXNMLPSA-J"
],
"kegg.compound":[
"C04882"
],
"metanetx.chemical":[
"MNXM1954"
],
"sabiork":[
"7645"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02932",
"cpd02968"
]
}
},
{
"id":"ppoh_c",
"name":"1-Propanol",
"compartment":"c",
"formula":"C3H8O",
"notes":{
"original_bigg_ids":[
"ppoh_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppoh"
],
"biocyc":[
"META:PROPANOL"
],
"chebi":[
"CHEBI:26278",
"CHEBI:44960",
"CHEBI:8472",
"CHEBI:28831"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/72f1dc7c-7d6f-44ab-8eb2-898c30996527"
],
"hmdb":[
"HMDB00820"
],
"inchi_key":[
"BDERNNFJNOPAEC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C05979"
],
"lipidmaps":[
"LMFA05000101"
],
"metanetx.chemical":[
"MNXM6396"
],
"sabiork":[
"2834"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03559"
]
}
},
{
"id":"spmd_c",
"name":"Spermidine",
"compartment":"c",
"charge":3,
"formula":"C7H22N3",
"notes":{
"original_bigg_ids":[
"spmd_c"
]
},
"annotation":{
"bigg.metabolite":[
"spmd"
],
"biocyc":[
"META:SPERMIDINE"
],
"chebi":[
"CHEBI:57834",
"CHEBI:15097",
"CHEBI:26732",
"CHEBI:26733",
"CHEBI:9218",
"CHEBI:45647",
"CHEBI:15095",
"CHEBI:16610"
],
"hmdb":[
"HMDB01257"
],
"inchi_key":[
"ATHGHQPFGPMSJY-UHFFFAOYSA-Q"
],
"kegg.compound":[
"C00315"
],
"metanetx.chemical":[
"MNXM124"
],
"reactome.compound":[
"204635",
"141324"
],
"sabiork":[
"3088"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00264"
]
}
},
{
"id":"um4p_c",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine",
"compartment":"c",
"charge":-4,
"formula":"C38H56N8O27P2",
"notes":{
"original_bigg_ids":[
"um4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"um4p"
],
"metanetx.chemical":[
"MNXM147329"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15579"
]
}
},
{
"id":"stcoa_c",
"name":"Stearoyl-CoA (n-C18:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C39H66N7O17P3S",
"notes":{
"original_bigg_ids":[
"stcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"stcoa"
],
"biocyc":[
"META:STEAROYL-COA"
],
"chebi":[
"CHEBI:15107",
"CHEBI:26754",
"CHEBI:57394",
"CHEBI:9256",
"CHEBI:15541"
],
"hmdb":[
"HMDB01114"
],
"inchi_key":[
"SIARJEKBADXQJG-LFZQUHGESA-J"
],
"kegg.compound":[
"C00412"
],
"lipidmaps":[
"LMFA07050369"
],
"metanetx.chemical":[
"MNXM272"
],
"reactome.compound":[
"428139"
],
"sabiork":[
"5079"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00327"
],
"slm":[
"000000441"
]
}
},
{
"id":"ump_c",
"name":"UMP C9H11N2O9P",
"compartment":"c",
"charge":-2,
"formula":"C9H11N2O9P",
"notes":{
"original_bigg_ids":[
"ump_c"
]
},
"annotation":{
"bigg.metabolite":[
"ump"
],
"biocyc":[
"META:UMP"
],
"chebi":[
"CHEBI:47721",
"CHEBI:9849",
"CHEBI:27231",
"CHEBI:46382",
"CHEBI:16695",
"CHEBI:13509",
"CHEBI:13508",
"CHEBI:46385",
"CHEBI:57865",
"CHEBI:46362"
],
"hmdb":[
"HMDB00288"
],
"inchi_key":[
"DJJCXFVJDGTHFX-XVFCMESISA-L"
],
"kegg.compound":[
"C00105"
],
"metanetx.chemical":[
"MNXM80"
],
"reactome.compound":[
"735698",
"109402"
],
"sabiork":[
"1300",
"25061"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00091"
]
}
},
{
"id":"succ_c",
"name":"Succinate",
"compartment":"c",
"charge":-2,
"formula":"C4H4O4",
"notes":{
"original_bigg_ids":[
"succ_c"
]
},
"annotation":{
"bigg.metabolite":[
"succ"
],
"biocyc":[
"META:SUC"
],
"chebi":[
"CHEBI:22941",
"CHEBI:26803",
"CHEBI:15741",
"CHEBI:132287",
"CHEBI:45639",
"CHEBI:30779",
"CHEBI:15125",
"CHEBI:22943",
"CHEBI:26807",
"CHEBI:9304",
"CHEBI:90372",
"CHEBI:30031"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/cc98aff0-7f64-4db4-9d59-de961c228496",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/6377658b-03f6-4fed-a5bf-ff0f2389b693",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/600b74d3-8fe5-426d-bedf-291175bd23e4",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8fdfd425-4343-4bf2-8427-b2ffa57fdbd7"
],
"hmdb":[
"HMDB00254"
],
"inchi_key":[
"KDYFGRWQOYBRFD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00042"
],
"lipidmaps":[
"LMFA01170043"
],
"metanetx.chemical":[
"MNXM25"
],
"reactome.compound":[
"389583",
"5278787",
"159939",
"433123",
"29434",
"113536"
],
"sabiork":[
"1924"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00036"
]
}
},
{
"id":"unaga_c",
"name":"Undecaprenyl diphospho N-acetyl-glucosamine",
"compartment":"c",
"charge":-2,
"formula":"C63H103NO12P2",
"notes":{
"original_bigg_ids":[
"unaga_c"
]
},
"annotation":{
"bigg.metabolite":[
"unaga"
],
"biocyc":[
"META:ACETYL-D-GLUCOSAMINYLDIPHOSPHO-UNDECAPRE"
],
"chebi":[
"CHEBI:62958",
"CHEBI:62959"
],
"inchi_key":[
"NEVJGTXBHJNFAZ-JXCMATCVSA-L"
],
"kegg.compound":[
"C01289"
],
"metanetx.chemical":[
"MNXM1333"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00946"
]
}
},
{
"id":"cu_e",
"name":"Cu+",
"compartment":"e",
"charge":1,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu_e"
]
},
"annotation":{
"bigg.metabolite":[
"cu"
],
"biocyc":[
"META:CU+"
],
"chebi":[
"CHEBI:49551",
"CHEBI:49552",
"CHEBI:23379"
],
"inchi_key":[
"VMQMZMRVKUZKQL-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM3568"
],
"sabiork":[
"20"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30760"
]
}
},
{
"id":"uppg3_c",
"name":"Uroporphyrinogen III",
"compartment":"c",
"charge":-8,
"formula":"C40H36N4O16",
"notes":{
"original_bigg_ids":[
"uppg3_c"
]
},
"annotation":{
"bigg.metabolite":[
"uppg3"
],
"biocyc":[
"META:UROPORPHYRINOGEN-III"
],
"chebi":[
"CHEBI:15437",
"CHEBI:15300",
"CHEBI:9905",
"CHEBI:27257",
"CHEBI:57308"
],
"hmdb":[
"HMDB01086"
],
"inchi_key":[
"HUHWZXWWOFSFKF-UHFFFAOYSA-F"
],
"kegg.compound":[
"C01051"
],
"metanetx.chemical":[
"MNXM414"
],
"reactome.compound":[
"189407"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00774"
]
}
},
{
"id":"cu2_e",
"name":"Copper",
"compartment":"e",
"charge":2,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu2_e"
]
},
"annotation":{
"bigg.metabolite":[
"cu2"
],
"biocyc":[
"META:CU+2"
],
"chebi":[
"CHEBI:29036",
"CHEBI:23380",
"CHEBI:49550",
"CHEBI:20882"
],
"hmdb":[
"HMDB00657"
],
"inchi_key":[
"JPVYNHNXODAKFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00070"
],
"metanetx.chemical":[
"MNXM632"
],
"reactome.compound":[
"437295",
"936901",
"209799"
],
"sabiork":[
"19"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00058"
]
}
},
{
"id":"succoa_c",
"name":"Succinyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C25H35N7O19P3S",
"notes":{
"original_bigg_ids":[
"succoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"succoa"
],
"biocyc":[
"META:SUC-COA"
],
"chebi":[
"CHEBI:57292",
"CHEBI:10746",
"CHEBI:15127",
"CHEBI:15380",
"CHEBI:9310",
"CHEBI:45541",
"CHEBI:26811"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/359075fb-98d9-458d-ba82-db4020e753f3"
],
"hmdb":[
"HMDB01022"
],
"inchi_key":[
"VNOYUJKHFWYWIR-ITIYDSSPSA-I"
],
"kegg.compound":[
"C00091"
],
"lipidmaps":[
"LMFA07050370"
],
"metanetx.chemical":[
"MNXM92"
],
"reactome.compound":[
"70958"
],
"sabiork":[
"1931"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00078"
]
}
},
{
"id":"sucsal_c",
"name":"Succinic semialdehyde",
"compartment":"c",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"sucsal_c"
]
},
"annotation":{
"bigg.metabolite":[
"sucsal"
],
"biocyc":[
"META:SUCC-S-ALD"
],
"chebi":[
"CHEBI:26805",
"CHEBI:16265",
"CHEBI:15126",
"CHEBI:57706",
"CHEBI:26804",
"CHEBI:9305"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/ca9b64a3-b0a1-4bec-8397-c86bf0d44409",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/909890c9-4671-45f3-803c-40412ae31e43"
],
"hmdb":[
"HMDB01259"
],
"inchi_key":[
"UIUJIQZEACWQSV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00232"
],
"lipidmaps":[
"LMFA06000118"
],
"metanetx.chemical":[
"MNXM172"
],
"reactome.compound":[
"880046"
],
"sabiork":[
"1984"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00199"
]
}
},
{
"id":"ddca_e",
"name":"Dodecanoate (n-C12:0)",
"compartment":"e",
"charge":-1,
"formula":"C12H23O2",
"notes":{
"original_bigg_ids":[
"ddca_e"
]
},
"annotation":{
"bigg.metabolite":[
"ddca"
],
"metanetx.chemical":[
"MNXM162258"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ura_c",
"name":"Uracil",
"compartment":"c",
"formula":"C4H4N2O2",
"notes":{
"original_bigg_ids":[
"ura_c"
]
},
"annotation":{
"bigg.metabolite":[
"ura"
],
"biocyc":[
"META:URACIL"
],
"chebi":[
"CHEBI:27210",
"CHEBI:43254",
"CHEBI:15288",
"CHEBI:46375",
"CHEBI:17568",
"CHEBI:9882"
],
"hmdb":[
"HMDB00300"
],
"inchi_key":[
"ISAKRJDGNUQOIC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00106"
],
"kegg.drug":[
"D00027",
"D09776"
],
"metanetx.chemical":[
"MNXM158"
],
"reactome.compound":[
"83962"
],
"sabiork":[
"61"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00092"
]
}
},
{
"id":"elao_e",
"name":"Anode (oxidized)",
"compartment":"e",
"formula":"X",
"notes":{
"original_bigg_ids":[
"elao_e"
]
},
"annotation":{
"bigg.metabolite":[
"elao"
],
"metanetx.chemical":[
"MNXM148081"
],
"sbo":"SBO:0000247"
}
},
{
"id":"sulfac_c",
"name":"Sulfoacetate",
"compartment":"c",
"charge":-2,
"formula":"C2H2O5S",
"notes":{
"original_bigg_ids":[
"sulfac_c"
]
},
"annotation":{
"bigg.metabolite":[
"sulfac"
],
"biocyc":[
"META:CPD-10246"
],
"chebi":[
"CHEBI:34987",
"CHEBI:49876",
"CHEBI:58824",
"CHEBI:50519"
],
"inchi_key":[
"AGGIJOLULBJGTQ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C14179"
],
"metanetx.chemical":[
"MNXM1949"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd09878"
]
}
},
{
"id":"utp_c",
"name":"UTP C9H11N2O15P3",
"compartment":"c",
"charge":-4,
"formula":"C9H11N2O15P3",
"notes":{
"original_bigg_ids":[
"utp_c"
]
},
"annotation":{
"bigg.metabolite":[
"utp"
],
"biocyc":[
"META:UTP"
],
"chebi":[
"CHEBI:9850",
"CHEBI:46398",
"CHEBI:27233",
"CHEBI:57481",
"CHEBI:37567",
"CHEBI:13510",
"CHEBI:46397",
"CHEBI:15713"
],
"hmdb":[
"HMDB00285"
],
"inchi_key":[
"PGAVKCOVUIYSFO-XVFCMESISA-J"
],
"kegg.compound":[
"C00075"
],
"metanetx.chemical":[
"MNXM121"
],
"reactome.compound":[
"29494"
],
"sabiork":[
"1288"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00062"
]
}
},
{
"id":"t3c11vaceACP_c",
"name":"Trans-3-cis-11-vacceoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C29H51N2O8PRS",
"notes":{
"original_bigg_ids":[
"t3c11vaceACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"t3c11vaceACP"
],
"metanetx.chemical":[
"MNXM5958"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15568"
]
}
},
{
"id":"elar_e",
"name":"Anode  (reduced)",
"compartment":"e",
"charge":-1,
"formula":"X",
"notes":{
"original_bigg_ids":[
"elar_e"
]
},
"annotation":{
"bigg.metabolite":[
"elar"
],
"metanetx.chemical":[
"MNXM148080"
],
"sbo":"SBO:0000247"
}
},
{
"id":"vaccoa_c",
"name":"Vinylacetyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H36N7O17P3S",
"notes":{
"original_bigg_ids":[
"vaccoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"vaccoa"
],
"biocyc":[
"META:CPD-226"
],
"chebi":[
"CHEBI:15543",
"CHEBI:9991",
"CHEBI:15311",
"CHEBI:27294",
"CHEBI:57396"
],
"inchi_key":[
"UATIGEHITDTAGF-CITAKDKDSA-J"
],
"kegg.compound":[
"C02331"
],
"lipidmaps":[
"LMFA07050400"
],
"metanetx.chemical":[
"MNXM2159"
],
"sabiork":[
"2404"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01557"
]
}
},
{
"id":"elco_e",
"name":"Cathode (Oxidized)",
"compartment":"e",
"formula":"X",
"notes":{
"original_bigg_ids":[
"elco_e"
]
},
"annotation":{
"bigg.metabolite":[
"elco"
],
"metanetx.chemical":[
"MNXM148128"
],
"sbo":"SBO:0000247"
}
},
{
"id":"t3c5ddeceACP_c",
"name":"Trans-3-cis-5-dodecenoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C23H39N2O8PRS",
"notes":{
"original_bigg_ids":[
"t3c5ddeceACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"t3c5ddeceACP"
],
"metanetx.chemical":[
"MNXM5959"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15569"
]
}
},
{
"id":"elcr_e",
"name":"Cathode (reduced)",
"compartment":"e",
"charge":-1,
"formula":"X",
"notes":{
"original_bigg_ids":[
"elcr_e"
]
},
"annotation":{
"bigg.metabolite":[
"elcr"
],
"metanetx.chemical":[
"MNXM148129"
],
"sbo":"SBO:0000247"
}
},
{
"id":"val__L_c",
"name":"L-Valine",
"compartment":"c",
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"val_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"val__L"
],
"biocyc":[
"META:VAL"
],
"chebi":[
"CHEBI:32859",
"CHEBI:57762",
"CHEBI:13186",
"CHEBI:16414",
"CHEBI:6321",
"CHEBI:21417",
"CHEBI:46418",
"CHEBI:46282",
"CHEBI:32852",
"CHEBI:32851",
"CHEBI:87977",
"CHEBI:32860",
"CHEBI:27266",
"CHEBI:46376",
"CHEBI:46484"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b2ec1d47-f20f-4b19-9b15-ac1a3c2159c5",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/65a4c231-5232-4f08-93e2-007eb0537f0e"
],
"hmdb":[
"HMDB00883",
"HMDB34366"
],
"inchi_key":[
"KZSNJWFQEVHDMF-BYPYZUCNSA-N"
],
"kegg.compound":[
"C16436",
"C00183"
],
"kegg.drug":[
"D00039"
],
"lipidmaps":[
"LMFA01100046"
],
"metanetx.chemical":[
"MNXM199"
],
"reactome.compound":[
"113540",
"29702"
],
"sabiork":[
"68",
"23113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15141",
"cpd00156"
]
}
},
{
"id":"t3c7mrseACP_c",
"name":"Trans-3-cis-7-myristoleoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C25H43N2O8PRS",
"notes":{
"original_bigg_ids":[
"t3c7mrseACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"t3c7mrseACP"
],
"metanetx.chemical":[
"MNXM5960"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15570"
]
}
},
{
"id":"valtrna_c",
"name":"L-Valyl-tRNA(Val)",
"compartment":"c",
"charge":1,
"formula":"C5H10NOR",
"notes":{
"original_bigg_ids":[
"valtrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"valtrna"
],
"chebi":[
"CHEBI:13187",
"CHEBI:29164",
"CHEBI:6322"
],
"kegg.compound":[
"C02554"
],
"metanetx.chemical":[
"MNXM90110"
],
"reactome.compound":[
"379782",
"379790"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12133"
]
}
},
{
"id":"t3c9palmeACP_c",
"name":"Trans-3-cis-9-palmitoleoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C27H47N2O8PRS",
"notes":{
"original_bigg_ids":[
"t3c9palmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"t3c9palmeACP"
],
"metanetx.chemical":[
"MNXM5961"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15571"
]
}
},
{
"id":"ethso3_e",
"name":"Ethanesulfonate",
"compartment":"e",
"charge":-1,
"formula":"C2H5O3S",
"notes":{
"original_bigg_ids":[
"ethso3_e"
]
},
"annotation":{
"bigg.metabolite":[
"ethso3"
],
"biocyc":[
"META:CPD-10434"
],
"chebi":[
"CHEBI:61909",
"CHEBI:42465"
],
"inchi_key":[
"CCIVGXIOQKPBKL-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM7343"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11579"
]
}
},
{
"id":"etoh_e",
"name":"Ethanol",
"compartment":"e",
"formula":"C2H6O",
"notes":{
"original_bigg_ids":[
"etoh_e"
]
},
"annotation":{
"bigg.metabolite":[
"etoh"
],
"biocyc":[
"META:ETOH"
],
"chebi":[
"CHEBI:42377",
"CHEBI:23978",
"CHEBI:30880",
"CHEBI:16236",
"CHEBI:52092",
"CHEBI:30878",
"CHEBI:4879",
"CHEBI:44594",
"CHEBI:14222"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a354fd-5003-4b7b-b11b-f54204aea384",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f89efe7c-1a6a-4d21-b99c-e3e1070a8062",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/56e18a05-c059-433a-94f6-0e26c01b010f",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9fb1fbdf-101b-4b82-a596-d2f52c870e4f"
],
"hmdb":[
"HMDB00108"
],
"inchi_key":[
"LFQSCWFLJHTTHZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00469"
],
"kegg.drug":[
"D06542",
"D02798",
"D00068",
"D04855"
],
"metanetx.chemical":[
"MNXM303"
],
"reactome.compound":[
"113748",
"30203"
],
"sabiork":[
"56"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00363"
]
}
},
{
"id":"wco_c",
"name":"Tungsten binding cofactor",
"compartment":"c",
"charge":-2,
"formula":"C10H10N5O8PS2W",
"notes":{
"original_bigg_ids":[
"wco_c"
]
},
"annotation":{
"bigg.metabolite":[
"wco"
],
"metanetx.chemical":[
"MNXM148528"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fe2_e",
"name":"Fe2+ mitochondria",
"compartment":"e",
"charge":2,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe2_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe2"
],
"biocyc":[
"META:FE+2"
],
"chebi":[
"CHEBI:29033",
"CHEBI:49599",
"CHEBI:13321",
"CHEBI:21129",
"CHEBI:13319",
"CHEBI:24876",
"CHEBI:34754"
],
"hmdb":[
"HMDB00692"
],
"inchi_key":[
"CWYNVVGOOAEACU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14818"
],
"metanetx.chemical":[
"MNXM111"
],
"sabiork":[
"1275"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10515"
]
}
},
{
"id":"tagur_c",
"name":"D-Tagaturonate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"tagur_c"
]
},
"annotation":{
"bigg.metabolite":[
"tagur"
],
"biocyc":[
"META:D-TAGATURONATE"
],
"chebi":[
"CHEBI:58493",
"CHEBI:59451",
"CHEBI:17886",
"CHEBI:4252",
"CHEBI:21098",
"CHEBI:21099",
"CHEBI:13026"
],
"inchi_key":[
"IZSRJDGCGRAUAR-WDCZJNDASA-M"
],
"kegg.compound":[
"C00558"
],
"lipidmaps":[
"LMFA05000654"
],
"metanetx.chemical":[
"MNXM1423"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00437"
]
}
},
{
"id":"xmp_c",
"name":"Xanthosine 5'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C10H11N4O9P",
"notes":{
"original_bigg_ids":[
"xmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"xmp"
],
"biocyc":[
"META:XANTHOSINE-5-PHOSPHATE"
],
"chebi":[
"CHEBI:10938",
"CHEBI:57464",
"CHEBI:27328",
"CHEBI:15324",
"CHEBI:10067",
"CHEBI:15652"
],
"hmdb":[
"HMDB01554",
"HMDB62755"
],
"inchi_key":[
"DCTLYFZHFGENCW-UUOKFMHZSA-L"
],
"kegg.compound":[
"C00655"
],
"metanetx.chemical":[
"MNXM298"
],
"reactome.compound":[
"111584"
],
"sabiork":[
"1686"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00497"
]
}
},
{
"id":"taur_c",
"name":"Taurine C2H7NO3S",
"compartment":"c",
"formula":"C2H7NO3S",
"notes":{
"original_bigg_ids":[
"taur_c"
]
},
"annotation":{
"bigg.metabolite":[
"taur"
],
"biocyc":[
"META:TAURINE"
],
"chebi":[
"CHEBI:32970",
"CHEBI:507393",
"CHEBI:9406",
"CHEBI:26852",
"CHEBI:15891",
"CHEBI:15195",
"CHEBI:45877"
],
"hmdb":[
"HMDB00251"
],
"inchi_key":[
"XOAAWQZATWQOTB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00245"
],
"kegg.drug":[
"D00047"
],
"metanetx.chemical":[
"MNXM282"
],
"reactome.compound":[
"193463",
"194069",
"159420"
],
"sabiork":[
"1989"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00210"
]
}
},
{
"id":"fe3_e",
"name":"Iron (Fe3+)",
"compartment":"e",
"charge":3,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe3_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe3"
],
"biocyc":[
"META:FE+3"
],
"chebi":[
"CHEBI:49595",
"CHEBI:13320",
"CHEBI:24877",
"CHEBI:21130",
"CHEBI:29034",
"CHEBI:34755"
],
"hmdb":[
"HMDB12943"
],
"inchi_key":[
"VTLYFUHAOXGGBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14819"
],
"metanetx.chemical":[
"MNXM196"
],
"reactome.compound":[
"917966",
"111736",
"917943",
"912519",
"912516"
],
"sabiork":[
"1361"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10516"
]
}
},
{
"id":"xtp_c",
"name":"XTP",
"compartment":"c",
"charge":-4,
"formula":"C10H11N4O15P3",
"notes":{
"original_bigg_ids":[
"xtp_c"
]
},
"annotation":{
"bigg.metabolite":[
"xtp"
],
"biocyc":[
"META:XTP"
],
"chebi":[
"CHEBI:61314",
"CHEBI:10049",
"CHEBI:59885"
],
"hmdb":[
"HMDB00293"
],
"inchi_key":[
"CAEFEWVYEZABLA-UUOKFMHZSA-J"
],
"kegg.compound":[
"C00700"
],
"metanetx.chemical":[
"MNXM1860"
],
"reactome.compound":[
"2509848"
],
"sabiork":[
"1876"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00530"
]
}
},
{
"id":"for_e",
"name":"Formate",
"compartment":"e",
"charge":-1,
"formula":"CH1O2",
"notes":{
"original_bigg_ids":[
"for_e"
]
},
"annotation":{
"bigg.metabolite":[
"for"
],
"biocyc":[
"META:CPD1G-1532",
"META:CPD1G-1535",
"META:FORMATE",
"META:CPD-9845",
"META:CPD1G-1534",
"META:CARBOXYL-GROUP",
"META:CPD1G-1533"
],
"chebi":[
"CHEBI:24081",
"CHEBI:30751",
"CHEBI:15740",
"CHEBI:5145",
"CHEBI:42460",
"CHEBI:14276",
"CHEBI:24082"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a9d20ae-b6ec-40a9-93ca-1de20597b1ed",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09c1ad08-016e-4477-8840-b97a031eae23",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/bf16ab32-cb3c-4427-a65a-089ab754823e",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/34fe3cd9-9b0b-46b0-a1c5-8a66509f1919",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1d077cf2-3f9f-4163-aa49-0fca1b2b3ab3"
],
"hmdb":[
"HMDB00142"
],
"inchi_key":[
"BDAGIHXWWSANSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00058"
],
"metanetx.chemical":[
"MNXM39"
],
"reactome.compound":[
"29460",
"194712",
"389585",
"6801451"
],
"sabiork":[
"1285"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00047",
"cpd22511"
]
}
},
{
"id":"td2coa_c",
"name":"Trans-Tetradec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C35H56N7O17P3S",
"notes":{
"original_bigg_ids":[
"td2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"td2coa"
],
"biocyc":[
"META:CPD-15568"
],
"chebi":[
"CHEBI:10734",
"CHEBI:61405",
"CHEBI:27721",
"CHEBI:27079"
],
"hmdb":[
"HMDB03946",
"HMDB13082"
],
"inchi_key":[
"MBCVYCOKMMMWLX-YYMFEJJQSA-J"
],
"kegg.compound":[
"C05273"
],
"lipidmaps":[
"LMFA07050021",
"LMFA07050396"
],
"metanetx.chemical":[
"MNXM654"
],
"reactome.compound":[
"77273"
],
"sabiork":[
"2750"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03127"
],
"slm":[
"000001021"
]
}
},
{
"id":"xu5p__D_c",
"name":"D-Xylulose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"xu5p_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"xu5p__D"
],
"biocyc":[
"META:XYLULOSE-5-PHOSPHATE"
],
"chebi":[
"CHEBI:13036",
"CHEBI:27354",
"CHEBI:4269",
"CHEBI:16332",
"CHEBI:57737",
"CHEBI:21121"
],
"hmdb":[
"HMDB06212",
"HMDB00868"
],
"inchi_key":[
"FNZLKVNUWIIPSJ-RFZPGFLSSA-L"
],
"kegg.compound":[
"C00231"
],
"metanetx.chemical":[
"MNXM186"
],
"reactome.compound":[
"29790"
],
"sabiork":[
"1317"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00198"
]
}
},
{
"id":"tdcoa_c",
"name":"Tetradecanoyl-CoA (n-C14:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C35H58N7O17P3S",
"notes":{
"original_bigg_ids":[
"tdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"tdcoa"
],
"biocyc":[
"META:TETRADECANOYL-COA"
],
"chebi":[
"CHEBI:15532",
"CHEBI:57385",
"CHEBI:9475",
"CHEBI:14637",
"CHEBI:26898",
"CHEBI:52969",
"CHEBI:15218"
],
"hmdb":[
"HMDB01521",
"HMDB06517"
],
"inchi_key":[
"DUAFKXOFBZQTQE-QSGBVPJFSA-J"
],
"kegg.compound":[
"C02593"
],
"lipidmaps":[
"LMFA07050352",
"LMFA07050373",
"LMFA07050008"
],
"metanetx.chemical":[
"MNXM224"
],
"reactome.compound":[
"77272"
],
"sabiork":[
"2457"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01695"
],
"slm":[
"000000439"
]
}
},
{
"id":"zn2_c",
"name":"Zinc",
"compartment":"c",
"charge":2,
"formula":"Zn",
"notes":{
"original_bigg_ids":[
"zn2_c"
]
},
"annotation":{
"bigg.metabolite":[
"zn2"
],
"biocyc":[
"META:ZN+2"
],
"chebi":[
"CHEBI:49982",
"CHEBI:49972",
"CHEBI:29105",
"CHEBI:27368",
"CHEBI:10113"
],
"hmdb":[
"HMDB01303"
],
"inchi_key":[
"PTFCDOFLOPIGGS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00038"
],
"metanetx.chemical":[
"MNXM149"
],
"reactome.compound":[
"216667",
"437093",
"29426",
"216785",
"435350",
"442320",
"158417"
],
"sabiork":[
"1281"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00034"
]
}
},
{
"id":"tddec2eACP_c",
"name":"Trans-Dodec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C23H41N2O8PRS",
"notes":{
"original_bigg_ids":[
"tddec2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tddec2eACP"
],
"biocyc":[
"META:Dodec-2-enoyl-ACPs"
],
"chebi":[
"CHEBI:10725"
],
"kegg.compound":[
"C05758"
],
"lipidmaps":[
"LMFA07060016"
],
"metanetx.chemical":[
"MNXM23842"
],
"sabiork":[
"8118"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11469"
]
}
},
{
"id":"galur_e",
"name":"D-Galacturonate",
"compartment":"e",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"galur_e"
]
},
"annotation":{
"bigg.metabolite":[
"galur"
],
"biocyc":[
"META:D-Galactopyranuronate"
],
"chebi":[
"CHEBI:20978",
"CHEBI:4153",
"CHEBI:18024",
"CHEBI:20976",
"CHEBI:75525"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-YMDCURPLSA-M"
],
"kegg.compound":[
"C00333"
],
"metanetx.chemical":[
"MNXM48464"
],
"sabiork":[
"2020"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00280"
]
}
},
{
"id":"tdeACP_c",
"name":"Cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C25H45N2O8PRS",
"notes":{
"original_bigg_ids":[
"tdeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tdeACP"
],
"metanetx.chemical":[
"MNXM162426"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2obut_e",
"name":"2-Oxobutanoate",
"compartment":"e",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"_2obut_e"
]
},
"annotation":{
"bigg.metabolite":[
"2obut"
],
"biocyc":[
"META:2-OXOBUTANOATE"
],
"chebi":[
"CHEBI:1250",
"CHEBI:16763",
"CHEBI:19741",
"CHEBI:30831",
"CHEBI:11636",
"CHEBI:39748",
"CHEBI:19743"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1d8dba15-23b7-4916-91ba-3b00be5e4e8b",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/86a149cf-c031-463b-aa33-253fcbde268f"
],
"hmdb":[
"HMDB00005",
"HMDB06544"
],
"inchi_key":[
"TYEYBOSBBBHJIV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00109"
],
"lipidmaps":[
"LMFA01060002"
],
"metanetx.chemical":[
"MNXM159"
],
"reactome.compound":[
"936714"
],
"sabiork":[
"1934"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00094"
]
}
},
{
"id":"tdec2eACP_c",
"name":"Trans-Dec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C21H37N2O8PRS",
"notes":{
"original_bigg_ids":[
"tdec2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tdec2eACP"
],
"chebi":[
"CHEBI:10724"
],
"kegg.compound":[
"C05754"
],
"lipidmaps":[
"LMFA07060012"
],
"metanetx.chemical":[
"MNXM28221"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11475"
]
}
},
{
"id":"glcur_e",
"name":"D-Glucuronate",
"compartment":"e",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"glcur_e"
]
},
"annotation":{
"bigg.metabolite":[
"glcur"
],
"biocyc":[
"META:D-Glucopyranuronate"
],
"chebi":[
"CHEBI:12975",
"CHEBI:24297",
"CHEBI:21013",
"CHEBI:47952",
"CHEBI:24298",
"CHEBI:4178",
"CHEBI:58720",
"CHEBI:15748"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-AQKNRBDQSA-M"
],
"kegg.compound":[
"C00191"
],
"metanetx.chemical":[
"MNXM241"
],
"sabiork":[
"26257"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00164"
]
}
},
{
"id":"3httdca_e",
"name":"3-hydroxy tetradecanoate (n-C14:0)",
"compartment":"e",
"charge":-1,
"formula":"C14H27O3",
"notes":{
"original_bigg_ids":[
"_3httdca_e"
]
},
"annotation":{
"bigg.metabolite":[
"3httdca"
],
"metanetx.chemical":[
"MNXM146921"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3mb_e",
"name":"3-Methylbutanoic acid",
"compartment":"e",
"charge":-1,
"formula":"C5H9O2",
"notes":{
"original_bigg_ids":[
"_3mb_e"
]
},
"annotation":{
"bigg.metabolite":[
"3mb"
],
"biocyc":[
"META:ISOVALERATE"
],
"chebi":[
"CHEBI:24930",
"CHEBI:48942",
"CHEBI:6069",
"CHEBI:43426",
"CHEBI:28484"
],
"hmdb":[
"HMDB00718"
],
"inchi_key":[
"GWYFCOCPABKNJV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C08262"
],
"lipidmaps":[
"LMFA01020181"
],
"metanetx.chemical":[
"MNXM7454"
],
"sabiork":[
"10362"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd05178"
]
}
},
{
"id":"glyc_e",
"name":"Glycerol",
"compartment":"e",
"formula":"C3H8O3",
"notes":{
"original_bigg_ids":[
"glyc_e"
]
},
"annotation":{
"bigg.metabolite":[
"glyc"
],
"biocyc":[
"META:GLYCEROL"
],
"chebi":[
"CHEBI:5448",
"CHEBI:14334",
"CHEBI:42998",
"CHEBI:17754",
"CHEBI:24351",
"CHEBI:131422"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/48edd8a9-6a4a-4900-b0cf-97b1ccaa1125",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2e8c8093-3269-46b3-be2e-f1df9fdde25c"
],
"hmdb":[
"HMDB00131"
],
"inchi_key":[
"PEDCQBHIVMGVHV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00116"
],
"kegg.drug":[
"D00028"
],
"metanetx.chemical":[
"MNXM89612"
],
"reactome.compound":[
"192438",
"76116"
],
"sabiork":[
"1303"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00100"
]
}
},
{
"id":"tdecoa_c",
"name":"Tetradecenoyl-CoA (n-C14:1CoA)",
"compartment":"c",
"charge":-4,
"formula":"C35H56N7O17P3S",
"notes":{
"original_bigg_ids":[
"tdecoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"tdecoa"
],
"metanetx.chemical":[
"MNXM2290"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4crsol_e",
"name":"P-Cresol",
"compartment":"e",
"formula":"C7H8O",
"notes":{
"original_bigg_ids":[
"_4crsol_e"
]
},
"annotation":{
"bigg.metabolite":[
"4crsol"
],
"biocyc":[
"META:CPD-108"
],
"chebi":[
"CHEBI:1816",
"CHEBI:20352",
"CHEBI:44726",
"CHEBI:17847",
"CHEBI:11981"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b1f893aa-04c5-4a93-b65f-6b42cd0dc97f"
],
"hmdb":[
"HMDB13762",
"HMDB01858"
],
"inchi_key":[
"IWDCLRJOBJJRNH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01468"
],
"metanetx.chemical":[
"MNXM828"
],
"sabiork":[
"25097",
"5602"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01042"
]
}
},
{
"id":"thdp_c",
"name":"2,3,4,5-Tetrahydrodipicolinate",
"compartment":"c",
"charge":-2,
"formula":"C7H7NO4",
"notes":{
"original_bigg_ids":[
"thdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"thdp"
],
"biocyc":[
"META:DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE"
],
"chebi":[
"CHEBI:11408",
"CHEBI:864",
"CHEBI:21189",
"CHEBI:6152",
"CHEBI:16845",
"CHEBI:18055",
"CHEBI:32976",
"CHEBI:13042"
],
"hmdb":[
"HMDB12289"
],
"inchi_key":[
"CXMBCXQHOXUCEO-BYPYZUCNSA-L"
],
"kegg.compound":[
"C03972"
],
"metanetx.chemical":[
"MNXM480"
],
"sabiork":[
"6990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29199",
"cpd02465"
]
}
},
{
"id":"thex2eACP_c",
"name":"Trans-Hex-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C17H29N2O8PRS",
"notes":{
"original_bigg_ids":[
"thex2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"thex2eACP"
],
"biocyc":[
"META:Hex-2-enoyl-ACPs"
],
"chebi":[
"CHEBI:10727"
],
"kegg.compound":[
"C05748"
],
"lipidmaps":[
"LMFA07060007"
],
"metanetx.chemical":[
"MNXM24502"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11473"
]
}
},
{
"id":"gm1lipa_e",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A (G. metallireducens, variant 1)",
"compartment":"e",
"charge":-4,
"formula":"C142H253N3O65P2",
"notes":{
"original_bigg_ids":[
"gm1lipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"gm1lipa"
],
"metanetx.chemical":[
"MNXM146508"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4hba_e",
"name":"4-Hydroxy-benzyl alcohol",
"compartment":"e",
"formula":"C7H8O2",
"notes":{
"original_bigg_ids":[
"_4hba_e"
]
},
"annotation":{
"bigg.metabolite":[
"4hba"
],
"biocyc":[
"META:4-HYDROXY-BENZYL-ALCOHOL"
],
"chebi":[
"CHEBI:67410"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/5fccc743-f94b-40f9-9c78-5f38cf50d217"
],
"hmdb":[
"HMDB11724"
],
"inchi_key":[
"BVJSUAQZOZWCKN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C17467"
],
"metanetx.chemical":[
"MNXM107505"
],
"sabiork":[
"26558"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd17595",
"cpd15378"
]
}
},
{
"id":"gm1lipb_e",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid B (G. metallireducens, variant 1)",
"compartment":"e",
"charge":-4,
"formula":"C128H227N3O63P2",
"notes":{
"original_bigg_ids":[
"gm1lipb_e"
]
},
"annotation":{
"bigg.metabolite":[
"gm1lipb"
],
"metanetx.chemical":[
"MNXM147821"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gm2lipa_e",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A (G. metallireducens, variant 2)",
"compartment":"e",
"charge":-4,
"formula":"C142H255N5O63P2",
"notes":{
"original_bigg_ids":[
"gm2lipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"gm2lipa"
],
"metanetx.chemical":[
"MNXM147384"
],
"sbo":"SBO:0000247"
}
},
{
"id":"thf_c",
"name":"5,6,7,8-Tetrahydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C19H21N7O6",
"notes":{
"original_bigg_ids":[
"thf_c"
]
},
"annotation":{
"bigg.metabolite":[
"thf"
],
"biocyc":[
"META:THF"
],
"chebi":[
"CHEBI:57453",
"CHEBI:46069",
"CHEBI:20506",
"CHEBI:12075",
"CHEBI:9482",
"CHEBI:15635",
"CHEBI:18606",
"CHEBI:10931",
"CHEBI:15220",
"CHEBI:68437"
],
"inchi_key":[
"MSTNYGQPCMXVAQ-RYUDHWBXSA-L"
],
"kegg.compound":[
"C00101"
],
"metanetx.chemical":[
"MNXM79"
],
"reactome.compound":[
"111355",
"200671"
],
"sabiork":[
"1297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29254"
]
}
},
{
"id":"4hbald_e",
"name":"4-Hydroxybenzaldehyde",
"compartment":"e",
"formula":"C7H6O2",
"notes":{
"original_bigg_ids":[
"_4hbald_e"
]
},
"annotation":{
"bigg.metabolite":[
"4hbald"
],
"biocyc":[
"META:4-HYDROXYBENZALDEHYDE"
],
"chebi":[
"CHEBI:17597",
"CHEBI:1857",
"CHEBI:12002",
"CHEBI:43009",
"CHEBI:20396"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/0c54f7ff-b26d-4b69-83d8-9bcc4283686b",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/5eb02bbc-e4ae-43c6-b80b-cda451d1f2b7"
],
"hmdb":[
"HMDB11718"
],
"inchi_key":[
"RGHHSNMVTDWUBI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00633"
],
"metanetx.chemical":[
"MNXM577"
],
"sabiork":[
"2127"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00484"
]
}
},
{
"id":"thmmp_c",
"name":"Thiamin monophosphate",
"compartment":"c",
"charge":-1,
"formula":"C12H16N4O4PS",
"notes":{
"original_bigg_ids":[
"thmmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"thmmp"
],
"biocyc":[
"META:THIAMINE-P"
],
"chebi":[
"CHEBI:9533",
"CHEBI:37574",
"CHEBI:15230",
"CHEBI:46189",
"CHEBI:26945",
"CHEBI:37575",
"CHEBI:15231"
],
"hmdb":[
"HMDB02666"
],
"inchi_key":[
"HZSAJDVWZRBGIF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01081"
],
"metanetx.chemical":[
"MNXM662"
],
"sabiork":[
"1698"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00793"
]
}
},
{
"id":"thmpp_c",
"name":"Thiamine diphosphate",
"compartment":"c",
"charge":-2,
"formula":"C12H16N4O7P2S",
"notes":{
"original_bigg_ids":[
"thmpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"thmpp"
],
"biocyc":[
"META:THIAMINE-PYROPHOSPHATE"
],
"chebi":[
"CHEBI:15229",
"CHEBI:58937",
"CHEBI:45931",
"CHEBI:45930",
"CHEBI:9532",
"CHEBI:49939"
],
"hmdb":[
"HMDB62636",
"HMDB01372"
],
"inchi_key":[
"AYEKOFBPNLCAJY-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00068"
],
"metanetx.chemical":[
"MNXM256"
],
"reactome.compound":[
"8878387",
"29480"
],
"sabiork":[
"1287"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00056"
]
}
},
{
"id":"gua_e",
"name":"Guanine",
"compartment":"e",
"formula":"C5H5N5O",
"notes":{
"original_bigg_ids":[
"gua_e"
]
},
"annotation":{
"bigg.metabolite":[
"gua"
],
"biocyc":[
"META:GUANINE"
],
"chebi":[
"CHEBI:16235",
"CHEBI:14371",
"CHEBI:42948",
"CHEBI:14372",
"CHEBI:24443",
"CHEBI:5563"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/b5208daa-3750-4745-b4ed-179fb9d4fcfd"
],
"hmdb":[
"HMDB00132"
],
"inchi_key":[
"UYTPUPDQBNUYGX-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00242"
],
"metanetx.chemical":[
"MNXM259"
],
"reactome.compound":[
"83956"
],
"sabiork":[
"59"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00207"
]
}
},
{
"id":"4hbz_e",
"name":"4-Hydroxybenzoate",
"compartment":"e",
"charge":-1,
"formula":"C7H5O3",
"notes":{
"original_bigg_ids":[
"_4hbz_e"
]
},
"annotation":{
"bigg.metabolite":[
"4hbz"
],
"biocyc":[
"META:4-hydroxybenzoate"
],
"chebi":[
"CHEBI:20397",
"CHEBI:30763",
"CHEBI:1858",
"CHEBI:17879",
"CHEBI:44949",
"CHEBI:12003",
"CHEBI:20398"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/1811ddf5-ba98-40a5-949d-c660b8587741",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9e05c7cc-e1b3-46a4-93ce-785c0dc04bfa",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1cc87b2b-41db-4354-90b1-049369c47662"
],
"hmdb":[
"HMDB00500"
],
"inchi_key":[
"FJKROLUGYXJWQN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00156"
],
"metanetx.chemical":[
"MNXM164"
],
"reactome.compound":[
"2162213"
],
"sabiork":[
"1951"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00136"
]
}
},
{
"id":"h_e",
"name":"H+",
"compartment":"e",
"charge":1,
"formula":"H",
"notes":{
"original_bigg_ids":[
"h_e"
]
},
"annotation":{
"bigg.metabolite":[
"h"
],
"biocyc":[
"META:PROTON"
],
"chebi":[
"CHEBI:5584",
"CHEBI:13357",
"CHEBI:15378",
"CHEBI:10744"
],
"hmdb":[
"HMDB59597"
],
"inchi_key":[
"GPRLSGONYQIRFK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00080"
],
"metanetx.chemical":[
"MNXM1"
],
"reactome.compound":[
"2000349",
"425978",
"74722",
"428040",
"427899",
"428548",
"156540",
"70106",
"425969",
"1132304",
"5668577",
"1470067",
"163953",
"193465",
"113529",
"351626",
"425999",
"194688",
"374900",
"2872447",
"372511"
],
"sabiork":[
"39"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00067"
]
}
},
{
"id":"thr__L_c",
"name":"L-Threonine",
"compartment":"c",
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"thr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"thr__L"
],
"biocyc":[
"META:THR"
],
"chebi":[
"CHEBI:16857",
"CHEBI:42083",
"CHEBI:32822",
"CHEBI:45843",
"CHEBI:57926",
"CHEBI:21403",
"CHEBI:32833",
"CHEBI:32820",
"CHEBI:13175",
"CHEBI:6308",
"CHEBI:45983",
"CHEBI:32832",
"CHEBI:26986"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b570a573-71c2-4661-a517-6ac1b121dc59"
],
"hmdb":[
"HMDB00167"
],
"inchi_key":[
"AYFVYJQAPQTCCC-GBXIJSLDSA-N"
],
"kegg.compound":[
"C00188"
],
"kegg.drug":[
"D00041"
],
"metanetx.chemical":[
"MNXM142"
],
"reactome.compound":[
"352000",
"351990",
"379706"
],
"sabiork":[
"76",
"27463"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00161"
]
}
},
{
"id":"Lcyst_e",
"name":"L-Cysteate",
"compartment":"e",
"charge":-1,
"formula":"C3H6NO5S",
"notes":{
"original_bigg_ids":[
"Lcyst_e"
]
},
"annotation":{
"bigg.metabolite":[
"Lcyst"
],
"biocyc":[
"META:L-CYSTEATE"
],
"chebi":[
"CHEBI:58090",
"CHEBI:44590",
"CHEBI:13094",
"CHEBI:6206",
"CHEBI:17285",
"CHEBI:44466",
"CHEBI:44708",
"CHEBI:44513"
],
"inchi_key":[
"XVOYSCVBGLVSOL-REOHCLBHSA-M"
],
"kegg.compound":[
"C00506"
],
"metanetx.chemical":[
"MNXM713"
],
"reactome.compound":[
"5673778",
"379444"
],
"sabiork":[
"2064"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00395"
]
}
},
{
"id":"h2_e",
"name":"Hydrogen",
"compartment":"e",
"formula":"H2",
"notes":{
"original_bigg_ids":[
"h2_e"
]
},
"annotation":{
"bigg.metabolite":[
"h2"
],
"biocyc":[
"META:HYDROGEN-MOLECULE"
],
"chebi":[
"CHEBI:18276",
"CHEBI:29298",
"CHEBI:29299",
"CHEBI:13350",
"CHEBI:29294",
"CHEBI:25363",
"CHEBI:5785"
],
"hmdb":[
"HMDB01362"
],
"inchi_key":[
"UFHFLCQGNIYNRP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00282"
],
"metanetx.chemical":[
"MNXM195"
],
"reactome.compound":[
"113555"
],
"sabiork":[
"5030"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11640"
]
}
},
{
"id":"ac_e",
"name":"Acetate",
"compartment":"e",
"charge":-1,
"formula":"C2H3O2",
"notes":{
"original_bigg_ids":[
"ac_e"
]
},
"annotation":{
"bigg.metabolite":[
"ac"
],
"biocyc":[
"META:ACET"
],
"chebi":[
"CHEBI:13704",
"CHEBI:22165",
"CHEBI:22169",
"CHEBI:40480",
"CHEBI:15366",
"CHEBI:2387",
"CHEBI:30089",
"CHEBI:40486"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/9e26dcbe-4db9-46a0-8614-9f03545032d2",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/5e4989fc-13d3-45d4-ad57-3be380a9d3c0",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a8f0be58-24e8-441b-8d81-a516a0ead4b3",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/d45256fe-61fa-4f5b-bb16-91a3d615e3d8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/3e2d750f-df31-4445-9255-163c627e9b4a"
],
"hmdb":[
"HMDB00042"
],
"inchi_key":[
"QTBSBXVTEAMEQO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00033"
],
"kegg.drug":[
"D00010"
],
"lipidmaps":[
"LMFA01010002"
],
"metanetx.chemical":[
"MNXM26"
],
"reactome.compound":[
"1524044",
"390305",
"113539",
"2022890",
"29416"
],
"sabiork":[
"1278"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00029"
],
"slm":[
"000000449"
]
}
},
{
"id":"h2o_e",
"name":"H2O H2O",
"compartment":"e",
"formula":"H2O",
"notes":{
"original_bigg_ids":[
"h2o_e"
]
},
"annotation":{
"bigg.metabolite":[
"h2o"
],
"biocyc":[
"META:CPD-15815",
"META:OXONIUM",
"META:HYDROXYL-GROUP",
"META:WATER",
"META:OH"
],
"chebi":[
"CHEBI:13352",
"CHEBI:30490",
"CHEBI:43228",
"CHEBI:33813",
"CHEBI:44292",
"CHEBI:44641",
"CHEBI:27313",
"CHEBI:42043",
"CHEBI:44819",
"CHEBI:29356",
"CHEBI:5594",
"CHEBI:10743",
"CHEBI:15377",
"CHEBI:42857",
"CHEBI:13365",
"CHEBI:29412",
"CHEBI:16234",
"CHEBI:13419",
"CHEBI:5585",
"CHEBI:44701"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/799908db-b8c9-4982-86cb-1f225e2ad08c",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e7f34a8e-cded-4793-b6d5-792335b38636",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/969d0227-3069-4e44-9525-7ae7bad84170"
],
"hmdb":[
"HMDB02111",
"HMDB01039"
],
"inchi_key":[
"XLYOFNOQVPJJNP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00001",
"C01328"
],
"kegg.drug":[
"D00001",
"D06322"
],
"metanetx.chemical":[
"MNXM2"
],
"reactome.compound":[
"113521",
"141343",
"2022884",
"5278291",
"29356",
"189422",
"5668574",
"5693747",
"109276",
"113519",
"1605715",
"8851517",
"113518",
"351603"
],
"sabiork":[
"40"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27222",
"cpd00001",
"cpd15275"
]
}
},
{
"id":"hdca_e",
"name":"Hexadecanoate (n-C16:0)",
"compartment":"e",
"charge":-1,
"formula":"C16H31O2",
"notes":{
"original_bigg_ids":[
"hdca_e"
]
},
"annotation":{
"bigg.metabolite":[
"hdca"
],
"biocyc":[
"META:PALMITATE"
],
"chebi":[
"CHEBI:7896",
"CHEBI:24540",
"CHEBI:231736",
"CHEBI:15756",
"CHEBI:44952",
"CHEBI:233028",
"CHEBI:24542",
"CHEBI:14730",
"CHEBI:35978",
"CHEBI:24541",
"CHEBI:24550",
"CHEBI:29889"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc7314a1-8e9a-410f-be4f-f7d8bf32b1cb"
],
"hmdb":[
"HMDB60083",
"HMDB00220"
],
"inchi_key":[
"IPCSVZSSVZVIGE-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00249"
],
"kegg.drug":[
"D05341"
],
"lipidmaps":[
"LMFA01010046",
"LMFA01010001"
],
"metanetx.chemical":[
"MNXM108"
],
"reactome.compound":[
"2453691",
"3632881",
"76168",
"5690516",
"390435",
"426576"
],
"sabiork":[
"1990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00214"
],
"slm":[
"000000510"
]
}
},
{
"id":"aso4_e",
"name":"Arsenate",
"compartment":"e",
"charge":-3,
"formula":"AsO4",
"notes":{
"original_bigg_ids":[
"aso4_e"
]
},
"annotation":{
"bigg.metabolite":[
"aso4"
],
"biocyc":[
"META:ARSENATE"
],
"chebi":[
"CHEBI:48600",
"CHEBI:29125",
"CHEBI:22631",
"CHEBI:48597",
"CHEBI:2843",
"CHEBI:13856",
"CHEBI:2844",
"CHEBI:22629",
"CHEBI:18231"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/090d280e-0ebf-4fab-bb54-3a3933e7a5fe"
],
"hmdb":[
"HMDB12190"
],
"inchi_key":[
"DJHGAFSJWGLOIV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01478",
"C11215"
],
"metanetx.chemical":[
"MNXM970"
],
"sabiork":[
"20046"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01048"
]
}
},
{
"id":"thrp_c",
"name":"L-Threonine O-3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C4H8NO6P",
"notes":{
"original_bigg_ids":[
"thrp_c"
]
},
"annotation":{
"bigg.metabolite":[
"thrp"
],
"biocyc":[
"META:L-THREONINE-O-3-PHOSPHATE"
],
"chebi":[
"CHEBI:58675",
"CHEBI:45955",
"CHEBI:37525",
"CHEBI:31757",
"CHEBI:21967"
],
"hmdb":[
"HMDB11185"
],
"inchi_key":[
"USRGIUJOYOXOQJ-GBXIJSLDSA-L"
],
"kegg.compound":[
"C12147"
],
"metanetx.chemical":[
"MNXM1492"
],
"sabiork":[
"14183"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08928"
]
}
},
{
"id":"btoh_e",
"name":"Butanol",
"compartment":"e",
"formula":"C4H10O",
"notes":{
"original_bigg_ids":[
"btoh_e"
]
},
"annotation":{
"bigg.metabolite":[
"btoh"
],
"biocyc":[
"META:BUTANOL"
],
"chebi":[
"CHEBI:22936",
"CHEBI:612",
"CHEBI:28885",
"CHEBI:39632"
],
"hmdb":[
"HMDB04327"
],
"inchi_key":[
"LRHPLDYGYMQRHN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06142"
],
"kegg.drug":[
"D03200"
],
"lipidmaps":[
"LMFA05000109"
],
"metanetx.chemical":[
"MNXM3230"
],
"sabiork":[
"25507",
"2869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03662"
]
}
},
{
"id":"thrtrna_c",
"name":"L-Threonyl-tRNA(Thr)",
"compartment":"c",
"charge":1,
"formula":"C4H8NO2R",
"notes":{
"original_bigg_ids":[
"thrtrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"thrtrna"
],
"chebi":[
"CHEBI:6309",
"CHEBI:29163",
"CHEBI:13176"
],
"kegg.compound":[
"C02992"
],
"metanetx.chemical":[
"MNXM89895"
],
"reactome.compound":[
"379783",
"379779"
],
"sabiork":[
"3804"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12229"
]
}
},
{
"id":"hdcea_e",
"name":"Hexadecenoate (n-C16:1)",
"compartment":"e",
"charge":-1,
"formula":"C16H29O2",
"notes":{
"original_bigg_ids":[
"hdcea_e"
]
},
"annotation":{
"bigg.metabolite":[
"hdcea"
],
"metanetx.chemical":[
"MNXM950"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hxan_e",
"name":"Hypoxanthine",
"compartment":"e",
"formula":"C5H4N4O",
"notes":{
"original_bigg_ids":[
"hxan_e"
]
},
"annotation":{
"bigg.metabolite":[
"hxan"
],
"biocyc":[
"META:HYPOXANTHINE"
],
"chebi":[
"CHEBI:14431",
"CHEBI:43237",
"CHEBI:5841",
"CHEBI:17368",
"CHEBI:24762"
],
"hmdb":[
"HMDB00157"
],
"inchi_key":[
"FDGQSTZJBFJUBT-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00262"
],
"metanetx.chemical":[
"MNXM213"
],
"reactome.compound":[
"113599"
],
"sabiork":[
"5528",
"1321"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00226"
]
}
},
{
"id":"but_e",
"name":"Butyrate (n-C4:0)",
"compartment":"e",
"charge":-1,
"formula":"C4H7O2",
"notes":{
"original_bigg_ids":[
"but_e"
]
},
"annotation":{
"bigg.metabolite":[
"but"
],
"metanetx.chemical":[
"MNXM162281"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ibt_e",
"name":"Isobutyrate",
"compartment":"e",
"charge":-1,
"formula":"C4H7O2",
"notes":{
"original_bigg_ids":[
"ibt_e"
]
},
"annotation":{
"bigg.metabolite":[
"ibt"
],
"biocyc":[
"META:ISOBUTYRATE"
],
"chebi":[
"CHEBI:19710",
"CHEBI:25337",
"CHEBI:11627",
"CHEBI:43397",
"CHEBI:16135",
"CHEBI:25334",
"CHEBI:1212",
"CHEBI:40653",
"CHEBI:48944"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8a5fed2d-f776-45c8-a5e1-ff36daf7b7fd",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/4cfd018c-fa7a-4005-97eb-88261a98ca92"
],
"hmdb":[
"HMDB03151",
"HMDB01873"
],
"inchi_key":[
"KQNPFQTWMSNSAP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C02632"
],
"lipidmaps":[
"LMFA01020071"
],
"metanetx.chemical":[
"MNXM2531"
],
"sabiork":[
"2473"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01711"
]
}
},
{
"id":"butso3_e",
"name":"Butanesulfonate",
"compartment":"e",
"charge":-1,
"formula":"C4H9O3S",
"notes":{
"original_bigg_ids":[
"butso3_e"
]
},
"annotation":{
"bigg.metabolite":[
"butso3"
],
"metanetx.chemical":[
"MNXM7138"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11596"
]
}
},
{
"id":"thym_c",
"name":"Thymine C5H6N2O2",
"compartment":"c",
"formula":"C5H6N2O2",
"notes":{
"original_bigg_ids":[
"thym_c"
]
},
"annotation":{
"bigg.metabolite":[
"thym"
],
"biocyc":[
"META:THYMINE"
],
"chebi":[
"CHEBI:15247",
"CHEBI:27004",
"CHEBI:46017",
"CHEBI:9580",
"CHEBI:17821"
],
"hmdb":[
"HMDB00262"
],
"inchi_key":[
"RWQNBRDOKXIBIV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00178"
],
"metanetx.chemical":[
"MNXM386"
],
"reactome.compound":[
"83960"
],
"sabiork":[
"60"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00151"
]
}
},
{
"id":"bz_e",
"name":"Benzoate",
"compartment":"e",
"charge":-1,
"formula":"C7H5O2",
"notes":{
"original_bigg_ids":[
"bz_e"
]
},
"annotation":{
"bigg.metabolite":[
"bz"
],
"biocyc":[
"META:BENZOATE"
],
"chebi":[
"CHEBI:3029",
"CHEBI:22717",
"CHEBI:22722",
"CHEBI:13879",
"CHEBI:16150",
"CHEBI:30746",
"CHEBI:41051"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/cdd00042-5c3e-4e42-bd2e-d98fd864baf2",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5f4c2b73-5f5e-40fe-8eb6-63ac4d9d4d4f",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/d37351f6-0937-4a6a-be39-fcfde47d1d15"
],
"hmdb":[
"HMDB01870"
],
"inchi_key":[
"WPYMKLBDIGXBTP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00180",
"C00539"
],
"kegg.drug":[
"D00038"
],
"metanetx.chemical":[
"MNXM217"
],
"reactome.compound":[
"159446"
],
"sabiork":[
"1912"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00153"
]
}
},
{
"id":"tmrs2eACP_c",
"name":"Trans-Tetradec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C25H45N2O8PRS",
"notes":{
"original_bigg_ids":[
"tmrs2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tmrs2eACP"
],
"biocyc":[
"META:Tetradec-2-enoyl-ACPs"
],
"chebi":[
"CHEBI:10735"
],
"kegg.compound":[
"C05760"
],
"lipidmaps":[
"LMFA07060018"
],
"metanetx.chemical":[
"MNXM24297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11467"
]
}
},
{
"id":"toct2eACP_c",
"name":"Trans-Oct-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C19H33N2O8PRS",
"notes":{
"original_bigg_ids":[
"toct2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"toct2eACP"
],
"biocyc":[
"META:2-Octenoyl-ACPs"
],
"kegg.compound":[
"C05751"
],
"lipidmaps":[
"LMFA07060009"
],
"metanetx.chemical":[
"MNXM23766"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11471"
]
}
},
{
"id":"ile__L_e",
"name":"L-Isoleucine",
"compartment":"e",
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"ile_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"ile__L"
],
"biocyc":[
"META:ILE"
],
"chebi":[
"CHEBI:43290",
"CHEBI:32604",
"CHEBI:43342",
"CHEBI:32605",
"CHEBI:17191",
"CHEBI:21344",
"CHEBI:13127",
"CHEBI:43366",
"CHEBI:6255",
"CHEBI:32613",
"CHEBI:32612",
"CHEBI:24898",
"CHEBI:58045"
],
"hmdb":[
"HMDB00172"
],
"inchi_key":[
"AGPKZVBTJJNPAG-WHFBIAKZSA-N"
],
"kegg.compound":[
"C00407"
],
"kegg.drug":[
"D00065"
],
"lipidmaps":[
"LMFA01100047"
],
"metanetx.chemical":[
"MNXM231"
],
"reactome.compound":[
"30102",
"113537"
],
"sabiork":[
"70",
"23116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00322"
]
}
},
{
"id":"isetac_e",
"name":"Isethionic acid",
"compartment":"e",
"charge":-1,
"formula":"C2H5O4S",
"notes":{
"original_bigg_ids":[
"isetac_e"
]
},
"annotation":{
"bigg.metabolite":[
"isetac"
],
"biocyc":[
"META:CPD-3745"
],
"chebi":[
"CHEBI:1157",
"CHEBI:61904"
],
"hmdb":[
"HMDB03903"
],
"inchi_key":[
"SUMDYPCJJOFFON-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05123"
],
"metanetx.chemical":[
"MNXM1630"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03048"
]
}
},
{
"id":"bzal_e",
"name":"Benzaldehyde",
"compartment":"e",
"formula":"C7H6O",
"notes":{
"original_bigg_ids":[
"bzal_e"
]
},
"annotation":{
"bigg.metabolite":[
"bzal"
],
"biocyc":[
"META:BENZALDEHYDE"
],
"chebi":[
"CHEBI:17169",
"CHEBI:22697",
"CHEBI:3019",
"CHEBI:13875"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f77c5866-ffbb-46fb-b356-081f6ab77d27",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/7f0c6d5c-b055-4ee6-adbc-8838dd917f6b"
],
"hmdb":[
"HMDB06115"
],
"inchi_key":[
"HUMNYLRZRPPJDN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00261",
"C00193"
],
"kegg.drug":[
"D02314"
],
"metanetx.chemical":[
"MNXM371"
],
"reactome.compound":[
"5696154"
],
"sabiork":[
"2000"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11631",
"cpd00225"
]
}
},
{
"id":"k_e",
"name":"Potassium",
"compartment":"e",
"charge":1,
"formula":"K",
"notes":{
"original_bigg_ids":[
"k_e"
]
},
"annotation":{
"bigg.metabolite":[
"k"
],
"biocyc":[
"META:K+"
],
"chebi":[
"CHEBI:26219",
"CHEBI:29103",
"CHEBI:8345",
"CHEBI:49685"
],
"hmdb":[
"HMDB00586"
],
"inchi_key":[
"NPYPAHLBTDXSSS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00238"
],
"kegg.drug":[
"D08403"
],
"metanetx.chemical":[
"MNXM95"
],
"reactome.compound":[
"74126",
"5626313",
"29804"
],
"sabiork":[
"21"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00205"
]
}
},
{
"id":"toctd2eACP_c",
"name":"Trans-octadec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C29H53N2O8PRS",
"notes":{
"original_bigg_ids":[
"toctd2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"toctd2eACP"
],
"biocyc":[
"META:Octadec-2-enoyl-ACPs"
],
"chebi":[
"CHEBI:80388"
],
"kegg.compound":[
"C16221"
],
"metanetx.chemical":[
"MNXM2573"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14940",
"cpd15572"
]
}
},
{
"id":"bzalc_e",
"name":"Benzyl alcohol",
"compartment":"e",
"formula":"C7H8O",
"notes":{
"original_bigg_ids":[
"bzalc_e"
]
},
"annotation":{
"bigg.metabolite":[
"bzalc"
],
"biocyc":[
"META:BENZYL-ALCOHOL"
],
"chebi":[
"CHEBI:22742",
"CHEBI:3053",
"CHEBI:17987",
"CHEBI:13888",
"CHEBI:25399"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c25af8cf-64f5-46a4-82c6-2bb1abee9484",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/f3c82224-615e-43dd-9ee6-2b290fb2d82d"
],
"hmdb":[
"HMDB03119"
],
"inchi_key":[
"WVDDGKGOMKODPV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00556",
"C03485"
],
"kegg.drug":[
"D00077"
],
"metanetx.chemical":[
"MNXM562"
],
"sabiork":[
"2093"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00435",
"cpd02199"
]
}
},
{
"id":"tol_c",
"name":"Toluene",
"compartment":"c",
"formula":"C7H8",
"notes":{
"original_bigg_ids":[
"tol_c"
]
},
"annotation":{
"bigg.metabolite":[
"tol"
],
"biocyc":[
"META:TOLUENE"
],
"chebi":[
"CHEBI:17578",
"CHEBI:15248",
"CHEBI:44023",
"CHEBI:27022",
"CHEBI:9624"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/cf365fd4-4d73-4d8e-a7b3-394c9c524dcf"
],
"hmdb":[
"HMDB34168"
],
"inchi_key":[
"YXFVVABEGXRONW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01455"
],
"metanetx.chemical":[
"MNXM889"
],
"sabiork":[
"5591"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01034"
]
}
},
{
"id":"kdo2lipid4_e",
"name":"KDO(2)-lipid IV(A)",
"compartment":"e",
"charge":-6,
"formula":"C84H148N2O37P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4_e"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4"
],
"biocyc":[
"META:KDO2-LIPID-IVA"
],
"chebi":[
"CHEBI:28526",
"CHEBI:60365",
"CHEBI:4477",
"CHEBI:23657"
],
"inchi_key":[
"XAOLJGCZESYRFT-VHSKNIDJSA-H"
],
"kegg.compound":[
"C06025"
],
"kegg.glycan":[
"G11160"
],
"lipidmaps":[
"LMSL02000003"
],
"metanetx.chemical":[
"MNXM824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03586"
]
}
},
{
"id":"ca2_e",
"name":"Calcium",
"compartment":"e",
"charge":2,
"formula":"Ca",
"notes":{
"original_bigg_ids":[
"ca2_e"
]
},
"annotation":{
"bigg.metabolite":[
"ca2"
],
"biocyc":[
"META:CA+2"
],
"chebi":[
"CHEBI:29108",
"CHEBI:48760",
"CHEBI:39123",
"CHEBI:22988",
"CHEBI:3308"
],
"hmdb":[
"HMDB00464"
],
"inchi_key":[
"BHPQYMZQTOCNFJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00076"
],
"metanetx.chemical":[
"MNXM128"
],
"reactome.compound":[
"111875",
"167012",
"139827",
"74016",
"74112",
"1606834",
"2855229"
],
"sabiork":[
"1289"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29674",
"cpd00063"
]
}
},
{
"id":"kdo2lipid4b_e",
"name":"KDO(2)-lipid IV(B)",
"compartment":"e",
"charge":-6,
"formula":"C70H122N2O35P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4b_e"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4b"
],
"biocyc":[
"META:CPD-3861"
],
"inchi_key":[
"WEHGITRIUDENCL-UHFFFAOYSA-H"
],
"metanetx.chemical":[
"MNXM58987"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd24457"
]
}
},
{
"id":"leu__L_e",
"name":"L-Leucine",
"compartment":"e",
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"leu_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"leu__L"
],
"biocyc":[
"META:LEU"
],
"chebi":[
"CHEBI:32620",
"CHEBI:25017",
"CHEBI:43695",
"CHEBI:21348",
"CHEBI:13131",
"CHEBI:43733",
"CHEBI:43646",
"CHEBI:43814",
"CHEBI:6260",
"CHEBI:32628",
"CHEBI:32627",
"CHEBI:10866",
"CHEBI:57427",
"CHEBI:32619",
"CHEBI:15603"
],
"hmdb":[
"HMDB00687",
"HMDB62203"
],
"inchi_key":[
"ROHFNLRQFUQHCH-YFKPBYRVSA-N"
],
"kegg.compound":[
"C16439",
"C00123"
],
"kegg.drug":[
"D00030"
],
"lipidmaps":[
"LMFA01100048"
],
"metanetx.chemical":[
"MNXM140"
],
"reactome.compound":[
"29588",
"113580",
"351964"
],
"sabiork":[
"21059",
"69"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00107",
"cpd15143"
]
}
},
{
"id":"tpalm2eACP_c",
"name":"Trans-Hexadec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C27H49N2O8PRS",
"notes":{
"original_bigg_ids":[
"tpalm2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tpalm2eACP"
],
"biocyc":[
"META:2-Hexadecenoyl-ACPs"
],
"chebi":[
"CHEBI:10729"
],
"kegg.compound":[
"C05763"
],
"lipidmaps":[
"LMFA07060020"
],
"metanetx.chemical":[
"MNXM29072"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11477"
]
}
},
{
"id":"trdox_c",
"name":"Oxidized thioredoxin",
"compartment":"c",
"formula":"X",
"notes":{
"original_bigg_ids":[
"trdox_c"
]
},
"annotation":{
"bigg.metabolite":[
"trdox"
],
"biocyc":[
"META:Ox-Thioredoxin"
],
"chebi":[
"CHEBI:14726",
"CHEBI:15240",
"CHEBI:7845",
"CHEBI:18191"
],
"kegg.compound":[
"C00343"
],
"metanetx.chemical":[
"MNXM148"
],
"reactome.compound":[
"2142833"
],
"sabiork":[
"1331"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27735",
"cpd29682",
"cpd11420"
]
}
},
{
"id":"cd2_e",
"name":"Cadmium",
"compartment":"e",
"charge":2,
"formula":"Cd",
"notes":{
"original_bigg_ids":[
"cd2_e"
]
},
"annotation":{
"bigg.metabolite":[
"cd2"
],
"biocyc":[
"META:CD+2"
],
"chebi":[
"CHEBI:48773",
"CHEBI:3290",
"CHEBI:48775"
],
"hmdb":[
"HMDB03638"
],
"inchi_key":[
"WLZRMCYVCSSEQC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01413"
],
"metanetx.chemical":[
"MNXM4505"
],
"sabiork":[
"48"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01012"
]
}
},
{
"id":"trdrd_c",
"name":"Reduced thioredoxin",
"compartment":"c",
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"trdrd_c"
]
},
"annotation":{
"bigg.metabolite":[
"trdrd"
],
"biocyc":[
"META:Red-Thioredoxin"
],
"chebi":[
"CHEBI:15033"
],
"kegg.compound":[
"C00342"
],
"metanetx.chemical":[
"MNXM96993"
],
"reactome.compound":[
"2142774"
],
"sabiork":[
"2803",
"1330"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11421",
"cpd28060"
]
}
},
{
"id":"lipa_e",
"name":"KDO(2)-lipid (A)",
"compartment":"e",
"charge":-6,
"formula":"C110H196N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"lipa"
],
"chebi":[
"CHEBI:27963",
"CHEBI:4476",
"CHEBI:23656",
"CHEBI:58540"
],
"inchi_key":[
"DIXUKJUHGLIZGU-OIPVZEHTSA-H"
],
"kegg.compound":[
"C06026"
],
"lipidmaps":[
"LMSL02000001"
],
"metanetx.chemical":[
"MNXM946"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03587"
]
}
},
{
"id":"lipb_e",
"name":"KDO(2)-lipid (B)",
"compartment":"e",
"charge":-6,
"formula":"C96H170N2O37P2",
"notes":{
"original_bigg_ids":[
"lipb_e"
]
},
"annotation":{
"bigg.metabolite":[
"lipb"
],
"metanetx.chemical":[
"MNXM148292"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tre_c",
"name":"Trehalose",
"compartment":"c",
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"tre_c"
]
},
"annotation":{
"bigg.metabolite":[
"tre"
],
"biocyc":[
"META:CPD-15990",
"META:TREHALOSE"
],
"chebi":[
"CHEBI:46211",
"CHEBI:12284",
"CHEBI:12281",
"CHEBI:15251",
"CHEBI:22365",
"CHEBI:10202",
"CHEBI:12287",
"CHEBI:16551",
"CHEBI:27082"
],
"hmdb":[
"HMDB00975"
],
"inchi_key":[
"HDTRYLNUVZCQOY-LIZSDCNHSA-N"
],
"kegg.compound":[
"C01083"
],
"kegg.glycan":[
"G00293"
],
"metanetx.chemical":[
"MNXM198"
],
"reactome.compound":[
"868614",
"189078"
],
"sabiork":[
"91"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00794"
]
}
},
{
"id":"cl_e",
"name":"Chloride",
"compartment":"e",
"charge":-1,
"formula":"Cl",
"notes":{
"original_bigg_ids":[
"cl_e"
]
},
"annotation":{
"bigg.metabolite":[
"cl"
],
"biocyc":[
"META:HCL",
"META:CL-"
],
"chebi":[
"CHEBI:24635",
"CHEBI:3731",
"CHEBI:13364",
"CHEBI:3616",
"CHEBI:13291",
"CHEBI:17883",
"CHEBI:48804",
"CHEBI:13970",
"CHEBI:5590",
"CHEBI:50315",
"CHEBI:17996"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/8797b51e-be83-48e1-82db-612c84006fdf",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b3225d45-6d2f-4312-a60d-70c87b617ad4"
],
"hmdb":[
"HMDB00492",
"HMDB02073",
"HMDB02306",
"HMDB02162"
],
"inchi_key":[
"VEXZGXHMUGYJMC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00698",
"C01327"
],
"kegg.drug":[
"D02057"
],
"metanetx.chemical":[
"MNXM43"
],
"reactome.compound":[
"29572",
"188972",
"3301973",
"352022",
"2731020",
"2731008",
"2730999"
],
"sabiork":[
"2270",
"51"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00099"
]
}
},
{
"id":"trnaala_c",
"name":"TRNA(Ala)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaala_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaala"
],
"biocyc":[
"META:ALA-tRNAs"
],
"chebi":[
"CHEBI:29170",
"CHEBI:15166",
"CHEBI:10672"
],
"kegg.compound":[
"C01635"
],
"metanetx.chemical":[
"MNXM89576"
],
"reactome.compound":[
"379729",
"379731"
],
"sabiork":[
"3841"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22249",
"cpd11906"
]
}
},
{
"id":"lys__L_e",
"name":"L-Lysine",
"compartment":"e",
"charge":1,
"formula":"C6H15N2O2",
"notes":{
"original_bigg_ids":[
"lys_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"lys__L"
],
"biocyc":[
"META:LYS"
],
"chebi":[
"CHEBI:6264",
"CHEBI:32564",
"CHEBI:13135",
"CHEBI:32550",
"CHEBI:21351",
"CHEBI:18019",
"CHEBI:32552",
"CHEBI:32551",
"CHEBI:133538",
"CHEBI:32565",
"CHEBI:43950",
"CHEBI:32563",
"CHEBI:25094"
],
"hmdb":[
"HMDB03405",
"HMDB00182",
"HMDB62809"
],
"inchi_key":[
"KDXKERNSBIXSRK-YFKPBYRVSA-O"
],
"kegg.compound":[
"C00047",
"C16440"
],
"kegg.drug":[
"D02304"
],
"metanetx.chemical":[
"MNXM78"
],
"reactome.compound":[
"29444",
"351979",
"351991"
],
"sabiork":[
"22945",
"79"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19182",
"cpd00039"
]
}
},
{
"id":"co2_e",
"name":"CO2 CO2",
"compartment":"e",
"formula":"CO2",
"notes":{
"original_bigg_ids":[
"co2_e"
]
},
"annotation":{
"bigg.metabolite":[
"co2"
],
"biocyc":[
"META:CARBON-DIOXIDE"
],
"chebi":[
"CHEBI:23011",
"CHEBI:3283",
"CHEBI:48829",
"CHEBI:16526",
"CHEBI:13283",
"CHEBI:13285",
"CHEBI:13284",
"CHEBI:13282"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2ec3da94-5f50-4525-81b1-5607c5c7a3d3",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379"
],
"hmdb":[
"HMDB01967"
],
"inchi_key":[
"CURLTUGMZLYLDI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00011"
],
"kegg.drug":[
"D00004"
],
"metanetx.chemical":[
"MNXM13"
],
"reactome.compound":[
"29376",
"5668565",
"189480",
"1132345",
"113528",
"1237009",
"159751",
"389536",
"159942"
],
"sabiork":[
"1266"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00011"
]
}
},
{
"id":"meoh_e",
"name":"Methanol",
"compartment":"e",
"formula":"CH4O1",
"notes":{
"original_bigg_ids":[
"meoh_e"
]
},
"annotation":{
"bigg.metabolite":[
"meoh"
],
"biocyc":[
"META:ALCOHOL-GROUP",
"META:METOH"
],
"chebi":[
"CHEBI:52090",
"CHEBI:25227",
"CHEBI:44080",
"CHEBI:17790",
"CHEBI:44553",
"CHEBI:14588",
"CHEBI:6816"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2c247069-759d-4108-ba1b-b1c81678bab7",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b5522308-bb5c-41bb-a11a-e9b9ae61da85"
],
"hmdb":[
"HMDB01875"
],
"inchi_key":[
"OKKJLVBELUTLKV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00132"
],
"kegg.drug":[
"D02309"
],
"metanetx.chemical":[
"MNXM157"
],
"reactome.compound":[
"5693711",
"5359061"
],
"sabiork":[
"55"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00116"
]
}
},
{
"id":"trnaarg_c",
"name":"TRNA(Arg)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaarg_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaarg"
],
"biocyc":[
"META:ARG-tRNAs"
],
"chebi":[
"CHEBI:10673",
"CHEBI:29171",
"CHEBI:15167"
],
"kegg.compound":[
"C01636"
],
"metanetx.chemical":[
"MNXM90751"
],
"reactome.compound":[
"379704",
"379727"
],
"sabiork":[
"3837"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11907",
"cpd22281"
]
}
},
{
"id":"cobalt2_e",
"name":"Co2+",
"compartment":"e",
"charge":2,
"formula":"Co",
"notes":{
"original_bigg_ids":[
"cobalt2_e"
]
},
"annotation":{
"bigg.metabolite":[
"cobalt2"
],
"biocyc":[
"META:CO+2"
],
"chebi":[
"CHEBI:48828",
"CHEBI:48827",
"CHEBI:23337"
],
"hmdb":[
"HMDB00608"
],
"inchi_key":[
"XLJKHNWPARRRJB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00175"
],
"metanetx.chemical":[
"MNXM90960"
],
"sabiork":[
"23"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00149"
]
}
},
{
"id":"trnaasn_c",
"name":"TRNA Asn  C10H17O10PR2",
"compartment":"c",
"formula":"C10H17O10PR2",
"notes":{
"original_bigg_ids":[
"trnaasn_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaasn"
],
"biocyc":[
"META:ASN-tRNAs"
],
"chebi":[
"CHEBI:15168",
"CHEBI:29172",
"CHEBI:10674"
],
"kegg.compound":[
"C01637"
],
"metanetx.chemical":[
"MNXM90665"
],
"reactome.compound":[
"379722",
"379699"
],
"sabiork":[
"3844"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11908",
"cpd22284"
]
}
},
{
"id":"mg2_e",
"name":"Magnesium",
"compartment":"e",
"charge":2,
"formula":"Mg",
"notes":{
"original_bigg_ids":[
"mg2_e"
]
},
"annotation":{
"bigg.metabolite":[
"mg2"
],
"biocyc":[
"META:MG+2"
],
"chebi":[
"CHEBI:6635",
"CHEBI:18420",
"CHEBI:13379",
"CHEBI:39127",
"CHEBI:25112",
"CHEBI:49736"
],
"hmdb":[
"HMDB00547"
],
"inchi_key":[
"JLVVSXFLKOJNIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00305"
],
"metanetx.chemical":[
"MNXM653"
],
"reactome.compound":[
"29926",
"114632",
"5336432",
"109496"
],
"sabiork":[
"1327"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00254"
]
}
},
{
"id":"mn2_e",
"name":"Manganese",
"compartment":"e",
"charge":2,
"formula":"Mn",
"notes":{
"original_bigg_ids":[
"mn2_e"
]
},
"annotation":{
"bigg.metabolite":[
"mn2"
],
"biocyc":[
"META:MN+2"
],
"chebi":[
"CHEBI:21435",
"CHEBI:25156",
"CHEBI:29035",
"CHEBI:49749"
],
"hmdb":[
"HMDB01333"
],
"inchi_key":[
"WAEMQWOKJMHJLA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19610"
],
"metanetx.chemical":[
"MNXM2255"
],
"reactome.compound":[
"29418",
"1981162"
],
"sabiork":[
"1279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20863",
"cpd00030"
]
}
},
{
"id":"cro4_e",
"name":"Chromate",
"compartment":"e",
"charge":-2,
"formula":"CrO4",
"notes":{
"original_bigg_ids":[
"cro4_e"
]
},
"annotation":{
"bigg.metabolite":[
"cro4"
],
"biocyc":[
"META:CPD-4422"
],
"chebi":[
"CHEBI:35404",
"CHEBI:33143",
"CHEBI:29393",
"CHEBI:23231",
"CHEBI:33144"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fb82e131-f9c0-4b6f-9803-de9e564de14b"
],
"inchi_key":[
"ZCDOYSPFYFSLEW-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM46638"
],
"sabiork":[
"18805"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11595"
]
}
},
{
"id":"mn4_e",
"name":"Mn4+",
"compartment":"e",
"charge":4,
"formula":"Mn",
"notes":{
"original_bigg_ids":[
"mn4_e"
]
},
"annotation":{
"bigg.metabolite":[
"mn4"
],
"chebi":[
"CHEBI:25158"
],
"inchi_key":[
"YZTQKMVBEGUONQ-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM61095"
],
"sbo":"SBO:0000247"
}
},
{
"id":"trnaasp_c",
"name":"TRNA(Asp)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaasp_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaasp"
],
"biocyc":[
"META:ASP-tRNAs"
],
"chebi":[
"CHEBI:15169",
"CHEBI:10675",
"CHEBI:29186"
],
"kegg.compound":[
"C01638"
],
"metanetx.chemical":[
"MNXM90752"
],
"reactome.compound":[
"379715",
"379711"
],
"sabiork":[
"3846"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11909",
"cpd22286"
]
}
},
{
"id":"aso3_p",
"name":"Arsenite",
"compartment":"p",
"charge":-3,
"formula":"AsO3",
"notes":{
"original_bigg_ids":[
"aso3_p"
]
},
"annotation":{
"bigg.metabolite":[
"aso3"
],
"biocyc":[
"META:CPD0-2040",
"META:CPD-763"
],
"chebi":[
"CHEBI:2846",
"CHEBI:22635",
"CHEBI:49899",
"CHEBI:13857",
"CHEBI:49900",
"CHEBI:29243",
"CHEBI:29866",
"CHEBI:29242"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/42d95b9b-3aca-45eb-a99d-ef775cb20524"
],
"hmdb":[
"HMDB11620"
],
"inchi_key":[
"AQLMHYSWFMLWBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06697"
],
"metanetx.chemical":[
"MNXM658"
],
"reactome.compound":[
"5696216"
],
"sabiork":[
"8854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26385",
"cpd04098"
]
}
},
{
"id":"trnacys_c",
"name":"TRNA(Cys)",
"compartment":"c",
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnacys_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnacys"
],
"biocyc":[
"META:CYS-tRNAs"
],
"chebi":[
"CHEBI:15173",
"CHEBI:10678",
"CHEBI:29167"
],
"kegg.compound":[
"C01639"
],
"metanetx.chemical":[
"MNXM162355"
],
"reactome.compound":[
"379725",
"379714"
],
"sabiork":[
"3834"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26668",
"cpd11910"
]
}
},
{
"id":"mobd_e",
"name":"Molybdate",
"compartment":"e",
"charge":-2,
"formula":"MoO4",
"notes":{
"original_bigg_ids":[
"mobd_e"
]
},
"annotation":{
"bigg.metabolite":[
"mobd"
],
"biocyc":[
"META:CPD-3"
],
"chebi":[
"CHEBI:36263",
"CHEBI:25368",
"CHEBI:36264",
"CHEBI:25371",
"CHEBI:6967"
],
"hmdb":[
"HMDB12260"
],
"inchi_key":[
"MEFBJEMVZONFCJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06232"
],
"metanetx.chemical":[
"MNXM1026"
],
"reactome.compound":[
"947561"
],
"sabiork":[
"8470"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11574"
]
}
},
{
"id":"mso3_e",
"name":"Methanesulfonate",
"compartment":"e",
"charge":-1,
"formula":"CH3O3S",
"notes":{
"original_bigg_ids":[
"mso3_e"
]
},
"annotation":{
"bigg.metabolite":[
"mso3"
],
"biocyc":[
"META:CPD-3746"
],
"chebi":[
"CHEBI:6813",
"CHEBI:27376",
"CHEBI:25224"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/08e4702f-d7fe-43da-9a21-5771459eab73"
],
"inchi_key":[
"AFVFQIVMOAPDHO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C11145"
],
"metanetx.chemical":[
"MNXM1485"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08023"
]
}
},
{
"id":"n2_e",
"name":"Nitrogen",
"compartment":"e",
"formula":"N2",
"notes":{
"original_bigg_ids":[
"n2_e"
]
},
"annotation":{
"bigg.metabolite":[
"n2"
],
"biocyc":[
"META:NITROGEN-MOLECULE"
],
"chebi":[
"CHEBI:7593",
"CHEBI:13388",
"CHEBI:30102",
"CHEBI:17997",
"CHEBI:30099",
"CHEBI:25365",
"CHEBI:14660",
"CHEBI:43128"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f4583a7f-9018-45bc-9a9c-545a7e4bc025",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8cc25506-23c5-423a-817d-68fb36ac7b81"
],
"hmdb":[
"HMDB01371"
],
"inchi_key":[
"IJGRMHOSHXDMSA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00697"
],
"kegg.drug":[
"D00083"
],
"metanetx.chemical":[
"MNXM724"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00528"
]
}
},
{
"id":"aso4_p",
"name":"Arsenate",
"compartment":"p",
"charge":-3,
"formula":"AsO4",
"notes":{
"original_bigg_ids":[
"aso4_p"
]
},
"annotation":{
"bigg.metabolite":[
"aso4"
],
"biocyc":[
"META:ARSENATE"
],
"chebi":[
"CHEBI:48600",
"CHEBI:29125",
"CHEBI:22631",
"CHEBI:48597",
"CHEBI:2843",
"CHEBI:13856",
"CHEBI:2844",
"CHEBI:22629",
"CHEBI:18231"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/090d280e-0ebf-4fab-bb54-3a3933e7a5fe"
],
"hmdb":[
"HMDB12190"
],
"inchi_key":[
"DJHGAFSJWGLOIV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01478",
"C11215"
],
"metanetx.chemical":[
"MNXM970"
],
"sabiork":[
"20046"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01048"
]
}
},
{
"id":"na1_e",
"name":"Sodium",
"compartment":"e",
"charge":1,
"formula":"Na",
"notes":{
"original_bigg_ids":[
"na1_e"
]
},
"annotation":{
"bigg.metabolite":[
"na1"
],
"biocyc":[
"META:NA+"
],
"chebi":[
"CHEBI:9175",
"CHEBI:49766",
"CHEBI:26717",
"CHEBI:29101"
],
"hmdb":[
"HMDB00588"
],
"inchi_key":[
"FKNQFGJONOIPTF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01330"
],
"metanetx.chemical":[
"MNXM27"
],
"reactome.compound":[
"2892454",
"83910",
"74113",
"425977",
"425971",
"2872443",
"425958"
],
"sabiork":[
"22"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00971"
]
}
},
{
"id":"btoh_p",
"name":"Butanol",
"compartment":"p",
"formula":"C4H10O",
"notes":{
"original_bigg_ids":[
"btoh_p"
]
},
"annotation":{
"bigg.metabolite":[
"btoh"
],
"biocyc":[
"META:BUTANOL"
],
"chebi":[
"CHEBI:22936",
"CHEBI:612",
"CHEBI:28885",
"CHEBI:39632"
],
"hmdb":[
"HMDB04327"
],
"inchi_key":[
"LRHPLDYGYMQRHN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06142"
],
"kegg.drug":[
"D03200"
],
"lipidmaps":[
"LMFA05000109"
],
"metanetx.chemical":[
"MNXM3230"
],
"sabiork":[
"25507",
"2869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03662"
]
}
},
{
"id":"nh4_e",
"name":"Ammonium",
"compartment":"e",
"charge":1,
"formula":"H4N",
"notes":{
"original_bigg_ids":[
"nh4_e"
]
},
"annotation":{
"bigg.metabolite":[
"nh4"
],
"biocyc":[
"META:AMMONIUM",
"META:AMMONIA"
],
"chebi":[
"CHEBI:44284",
"CHEBI:135980",
"CHEBI:22533",
"CHEBI:13406",
"CHEBI:29337",
"CHEBI:29340",
"CHEBI:13771",
"CHEBI:16134",
"CHEBI:28938",
"CHEBI:22534",
"CHEBI:13405",
"CHEBI:49783",
"CHEBI:7434",
"CHEBI:7435",
"CHEBI:44269",
"CHEBI:44404",
"CHEBI:13407"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/96667bd9-aeae-4e8f-89d3-100d0396af05",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/41e4c903-407f-49f7-bf6b-0a94d39fa3a7",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/27a89bdf-42f7-478f-91d8-e39881581096"
],
"hmdb":[
"HMDB00051",
"HMDB41827"
],
"inchi_key":[
"QGZKDVFQNNGYKY-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00014",
"C01342"
],
"kegg.drug":[
"D02916",
"D02915"
],
"metanetx.chemical":[
"MNXM15"
],
"reactome.compound":[
"5693978",
"1132163",
"29382",
"76230",
"140912",
"389843",
"2022135",
"31633",
"113561"
],
"sabiork":[
"1268",
"43"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19013",
"cpd00013"
]
}
},
{
"id":"but_p",
"name":"Butyrate (n-C4:0)",
"compartment":"p",
"charge":-1,
"formula":"C4H7O2",
"notes":{
"original_bigg_ids":[
"but_p"
]
},
"annotation":{
"bigg.metabolite":[
"but"
],
"metanetx.chemical":[
"MNXM162281"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ni2_e",
"name":"Nickel",
"compartment":"e",
"charge":2,
"formula":"Ni",
"notes":{
"original_bigg_ids":[
"ni2_e"
]
},
"annotation":{
"bigg.metabolite":[
"ni2"
],
"biocyc":[
"META:NI+2"
],
"chebi":[
"CHEBI:25517",
"CHEBI:49785",
"CHEBI:49786"
],
"hmdb":[
"HMDB02457"
],
"inchi_key":[
"VEQPNABPJHWNSG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19609"
],
"metanetx.chemical":[
"MNXM3673"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20862"
]
}
},
{
"id":"no2_e",
"name":"Nitrite",
"compartment":"e",
"charge":-1,
"formula":"NO2",
"notes":{
"original_bigg_ids":[
"no2_e"
]
},
"annotation":{
"bigg.metabolite":[
"no2"
],
"biocyc":[
"META:NITRITE"
],
"chebi":[
"CHEBI:16301",
"CHEBI:14658",
"CHEBI:7585",
"CHEBI:44396",
"CHEBI:25567"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/84af9b8c-5f58-4093-85cb-964ba8ed40b7"
],
"hmdb":[
"HMDB02786"
],
"inchi_key":[
"IOVCWXUNBOPUCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00088"
],
"metanetx.chemical":[
"MNXM107"
],
"reactome.compound":[
"1222379"
],
"sabiork":[
"3058"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00075"
]
}
},
{
"id":"butso3_p",
"name":"Butanesulfonate",
"compartment":"p",
"charge":-1,
"formula":"C4H9O3S",
"notes":{
"original_bigg_ids":[
"butso3_p"
]
},
"annotation":{
"bigg.metabolite":[
"butso3"
],
"metanetx.chemical":[
"MNXM7138"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11596"
]
}
},
{
"id":"no3_e",
"name":"Nitrate",
"compartment":"e",
"charge":-1,
"formula":"NO3",
"notes":{
"original_bigg_ids":[
"no3_e"
]
},
"annotation":{
"bigg.metabolite":[
"no3"
],
"biocyc":[
"META:NITRATE",
"META:CPD-15028"
],
"chebi":[
"CHEBI:44487",
"CHEBI:14654",
"CHEBI:71263",
"CHEBI:7580",
"CHEBI:17632",
"CHEBI:48107",
"CHEBI:25545"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/706be27f-b4cf-4022-b2ef-04cec5197ca5"
],
"hmdb":[
"HMDB02878",
"HMDB01853"
],
"inchi_key":[
"NHNBFGGVMKEFGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00244"
],
"kegg.drug":[
"D02313"
],
"metanetx.chemical":[
"MNXM207"
],
"sabiork":[
"1988"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00209"
]
}
},
{
"id":"pe120_p",
"name":"Phosphatidylethanolamine (didodecanoyl, n-C12:0)",
"compartment":"p",
"formula":"C29H58N1O8P1",
"notes":{
"original_bigg_ids":[
"pe120_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe120"
],
"biocyc":[
"META:CPD-17088"
],
"lipidmaps":[
"LMGP02010098"
],
"metanetx.chemical":[
"MNXM2858"
],
"sbo":"SBO:0000247",
"slm":[
"000034904"
]
}
},
{
"id":"bz_p",
"name":"Benzoate",
"compartment":"p",
"charge":-1,
"formula":"C7H5O2",
"notes":{
"original_bigg_ids":[
"bz_p"
]
},
"annotation":{
"bigg.metabolite":[
"bz"
],
"biocyc":[
"META:BENZOATE"
],
"chebi":[
"CHEBI:3029",
"CHEBI:22717",
"CHEBI:22722",
"CHEBI:13879",
"CHEBI:16150",
"CHEBI:30746",
"CHEBI:41051"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/cdd00042-5c3e-4e42-bd2e-d98fd864baf2",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5f4c2b73-5f5e-40fe-8eb6-63ac4d9d4d4f",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/d37351f6-0937-4a6a-be39-fcfde47d1d15"
],
"hmdb":[
"HMDB01870"
],
"inchi_key":[
"WPYMKLBDIGXBTP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00180",
"C00539"
],
"kegg.drug":[
"D00038"
],
"metanetx.chemical":[
"MNXM217"
],
"reactome.compound":[
"159446"
],
"sabiork":[
"1912"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00153"
]
}
},
{
"id":"pe140_p",
"name":"Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)",
"compartment":"p",
"formula":"C33H66N1O8P1",
"notes":{
"original_bigg_ids":[
"pe140_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe140"
],
"biocyc":[
"META:CPD-17087"
],
"hmdb":[
"HMDB08821",
"HMDB05313"
],
"lipidmaps":[
"LMGP02010352"
],
"metanetx.chemical":[
"MNXM2859"
],
"sbo":"SBO:0000247",
"slm":[
"000034918"
]
}
},
{
"id":"ocdca_e",
"name":"Octadecanoate (n-C18:0)",
"compartment":"e",
"charge":-1,
"formula":"C18H35O2",
"notes":{
"original_bigg_ids":[
"ocdca_e"
]
},
"annotation":{
"bigg.metabolite":[
"ocdca"
],
"biocyc":[
"META:STEARIC_ACID"
],
"chebi":[
"CHEBI:25631",
"CHEBI:231588",
"CHEBI:45710",
"CHEBI:25629",
"CHEBI:28842"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c0fae385-4844-4700-ba7a-96b6726ed216"
],
"hmdb":[
"HMDB00827"
],
"inchi_key":[
"QIQXTHQIDYTFRH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01530"
],
"kegg.drug":[
"D00119"
],
"lipidmaps":[
"LMFA01010018",
"LMFA01010047"
],
"metanetx.chemical":[
"MNXM236"
],
"reactome.compound":[
"428198"
],
"sabiork":[
"20032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01080"
],
"slm":[
"000000826"
]
}
},
{
"id":"bzal_p",
"name":"Benzaldehyde",
"compartment":"p",
"formula":"C7H6O",
"notes":{
"original_bigg_ids":[
"bzal_p"
]
},
"annotation":{
"bigg.metabolite":[
"bzal"
],
"biocyc":[
"META:BENZALDEHYDE"
],
"chebi":[
"CHEBI:17169",
"CHEBI:22697",
"CHEBI:3019",
"CHEBI:13875"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f77c5866-ffbb-46fb-b356-081f6ab77d27",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/7f0c6d5c-b055-4ee6-adbc-8838dd917f6b"
],
"hmdb":[
"HMDB06115"
],
"inchi_key":[
"HUMNYLRZRPPJDN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00261",
"C00193"
],
"kegg.drug":[
"D02314"
],
"metanetx.chemical":[
"MNXM371"
],
"reactome.compound":[
"5696154"
],
"sabiork":[
"2000"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11631",
"cpd00225"
]
}
},
{
"id":"ocdcea_e",
"name":"Octadecenoate (n-C18:1)",
"compartment":"e",
"charge":-1,
"formula":"C18H33O2",
"notes":{
"original_bigg_ids":[
"ocdcea_e"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcea"
],
"biocyc":[
"META:OLEATE-CPD"
],
"chebi":[
"CHEBI:30823",
"CHEBI:25664",
"CHEBI:16196",
"CHEBI:7741",
"CHEBI:14684",
"CHEBI:104361",
"CHEBI:25663",
"CHEBI:44741"
],
"hmdb":[
"HMDB00207",
"HMDB02066"
],
"inchi_key":[
"ZQPPMHVWECSIRJ-KTKRTIGZSA-M"
],
"kegg.compound":[
"C00712"
],
"kegg.drug":[
"D02315"
],
"lipidmaps":[
"LMFA01030810",
"LMFA01030763",
"LMFA01030002"
],
"metanetx.chemical":[
"MNXM306"
],
"sabiork":[
"2139",
"28897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00536"
],
"slm":[
"000000418"
]
}
},
{
"id":"pe141_p",
"name":"Phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"formula":"C33H62N1O8P1",
"notes":{
"original_bigg_ids":[
"pe141_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe141"
],
"metanetx.chemical":[
"MNXM3693"
],
"sbo":"SBO:0000247"
}
},
{
"id":"bzalc_p",
"name":"Benzyl alcohol",
"compartment":"p",
"formula":"C7H8O",
"notes":{
"original_bigg_ids":[
"bzalc_p"
]
},
"annotation":{
"bigg.metabolite":[
"bzalc"
],
"biocyc":[
"META:BENZYL-ALCOHOL"
],
"chebi":[
"CHEBI:22742",
"CHEBI:3053",
"CHEBI:17987",
"CHEBI:13888",
"CHEBI:25399"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c25af8cf-64f5-46a4-82c6-2bb1abee9484",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/f3c82224-615e-43dd-9ee6-2b290fb2d82d"
],
"hmdb":[
"HMDB03119"
],
"inchi_key":[
"WVDDGKGOMKODPV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00556",
"C03485"
],
"kegg.drug":[
"D00077"
],
"metanetx.chemical":[
"MNXM562"
],
"sabiork":[
"2093"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00435",
"cpd02199"
]
}
},
{
"id":"pe160_p",
"name":"Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)",
"compartment":"p",
"formula":"C37H74N1O8P1",
"notes":{
"original_bigg_ids":[
"pe160_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe160"
],
"biocyc":[
"META:CPD-12819"
],
"chebi":[
"CHEBI:73005",
"CHEBI:73127"
],
"hmdb":[
"HMDB05317",
"HMDB08923"
],
"inchi_key":[
"SLKDGVPOSSLUAI-PGUFJCEWSA-N"
],
"lipidmaps":[
"LMGP02010037"
],
"metanetx.chemical":[
"MNXM32178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15531",
"cpd29054",
"cpd23597"
],
"slm":[
"000034909"
]
}
},
{
"id":"omcho_e",
"name":"Outer Membrane Cytochrome c type oxidized (high potential)",
"compartment":"e",
"charge":3,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"omcho_e"
]
},
"annotation":{
"bigg.metabolite":[
"omcho"
],
"metanetx.chemical":[
"MNXM146425"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ca2_p",
"name":"Calcium",
"compartment":"p",
"charge":2,
"formula":"Ca",
"notes":{
"original_bigg_ids":[
"ca2_p"
]
},
"annotation":{
"bigg.metabolite":[
"ca2"
],
"biocyc":[
"META:CA+2"
],
"chebi":[
"CHEBI:29108",
"CHEBI:48760",
"CHEBI:39123",
"CHEBI:22988",
"CHEBI:3308"
],
"hmdb":[
"HMDB00464"
],
"inchi_key":[
"BHPQYMZQTOCNFJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00076"
],
"metanetx.chemical":[
"MNXM128"
],
"reactome.compound":[
"111875",
"167012",
"139827",
"74016",
"74112",
"1606834",
"2855229"
],
"sabiork":[
"1289"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29674",
"cpd00063"
]
}
},
{
"id":"omchr_e",
"name":"Outer Membrane Cytochrome c reduced (high potential)",
"compartment":"e",
"charge":2,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"omchr_e"
]
},
"annotation":{
"bigg.metabolite":[
"omchr"
],
"metanetx.chemical":[
"MNXM146424"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pe161_p",
"name":"Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)",
"compartment":"p",
"formula":"C37H70N1O8P1",
"notes":{
"original_bigg_ids":[
"pe161_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe161"
],
"biocyc":[
"META:CPD-17086"
],
"hmdb":[
"HMDB05342",
"HMDB08957"
],
"lipidmaps":[
"LMGP02010108"
],
"metanetx.chemical":[
"MNXM71458"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29055"
],
"slm":[
"000034897"
]
}
},
{
"id":"cd2_p",
"name":"Cadmium",
"compartment":"p",
"charge":2,
"formula":"Cd",
"notes":{
"original_bigg_ids":[
"cd2_p"
]
},
"annotation":{
"bigg.metabolite":[
"cd2"
],
"biocyc":[
"META:CD+2"
],
"chebi":[
"CHEBI:48773",
"CHEBI:3290",
"CHEBI:48775"
],
"hmdb":[
"HMDB03638"
],
"inchi_key":[
"WLZRMCYVCSSEQC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01413"
],
"metanetx.chemical":[
"MNXM4505"
],
"sabiork":[
"48"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01012"
]
}
},
{
"id":"pe180_p",
"name":"Phosphatidylethanolamine (dioctadecanoyl, n-C18:0)",
"compartment":"p",
"formula":"C41H82N1O8P1",
"notes":{
"original_bigg_ids":[
"pe180_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe180"
],
"biocyc":[
"META:CPD-12818"
],
"chebi":[
"CHEBI:47765",
"CHEBI:44886",
"CHEBI:39934",
"CHEBI:47766"
],
"hmdb":[
"HMDB05327",
"HMDB08991"
],
"inchi_key":[
"LVNGJLRDBYCPGB-LDLOPFEMSA-N"
],
"lipidmaps":[
"LMGP02010097"
],
"metanetx.chemical":[
"MNXM31536"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15533",
"cpd23596"
],
"slm":[
"000034913"
]
}
},
{
"id":"omclo_e",
"name":"Outer Membrane Cytochrome c type oxidized (low potential)",
"compartment":"e",
"charge":3,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"omclo_e"
]
},
"annotation":{
"bigg.metabolite":[
"omclo"
],
"metanetx.chemical":[
"MNXM147532"
],
"sbo":"SBO:0000247"
}
},
{
"id":"omclr_e",
"name":"Outer Membrane Cytochrome c type reduced 1(low potential)",
"compartment":"e",
"charge":2,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"omclr_e"
]
},
"annotation":{
"bigg.metabolite":[
"omclr"
],
"metanetx.chemical":[
"MNXM147533"
],
"sbo":"SBO:0000247"
}
},
{
"id":"cl_p",
"name":"Chloride",
"compartment":"p",
"charge":-1,
"formula":"Cl",
"notes":{
"original_bigg_ids":[
"cl_p"
]
},
"annotation":{
"bigg.metabolite":[
"cl"
],
"biocyc":[
"META:HCL",
"META:CL-"
],
"chebi":[
"CHEBI:24635",
"CHEBI:3731",
"CHEBI:13364",
"CHEBI:3616",
"CHEBI:13291",
"CHEBI:17883",
"CHEBI:48804",
"CHEBI:13970",
"CHEBI:5590",
"CHEBI:50315",
"CHEBI:17996"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/8797b51e-be83-48e1-82db-612c84006fdf",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b3225d45-6d2f-4312-a60d-70c87b617ad4"
],
"hmdb":[
"HMDB00492",
"HMDB02073",
"HMDB02306",
"HMDB02162"
],
"inchi_key":[
"VEXZGXHMUGYJMC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00698",
"C01327"
],
"kegg.drug":[
"D02057"
],
"metanetx.chemical":[
"MNXM43"
],
"reactome.compound":[
"29572",
"188972",
"3301973",
"352022",
"2731020",
"2731008",
"2730999"
],
"sabiork":[
"2270",
"51"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00099"
]
}
},
{
"id":"oxa_e",
"name":"Oxalate",
"compartment":"e",
"charge":-2,
"formula":"C2O4",
"notes":{
"original_bigg_ids":[
"oxa_e"
]
},
"annotation":{
"bigg.metabolite":[
"oxa"
],
"biocyc":[
"META:OXALATE"
],
"chebi":[
"CHEBI:46904",
"CHEBI:14702",
"CHEBI:44583",
"CHEBI:132952",
"CHEBI:30623",
"CHEBI:44820",
"CHEBI:7811",
"CHEBI:25730",
"CHEBI:16995",
"CHEBI:25729"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/33fed278-dbd7-421a-aac0-6c9da2f52882",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09f794f3-250c-406d-9481-e8bd691395c0",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c85291d2-bb9f-4f78-b6d0-c543bc53b2dc",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/96c40666-898b-4e97-bdfe-43dc9d76caed"
],
"hmdb":[
"HMDB02329"
],
"inchi_key":[
"MUBZPKHOEPUJKR-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00209"
],
"metanetx.chemical":[
"MNXM291"
],
"reactome.compound":[
"389819"
],
"sabiork":[
"1975"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00180"
]
}
},
{
"id":"pe181_p",
"name":"Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"formula":"C41H78N1O8P1",
"notes":{
"original_bigg_ids":[
"pe181_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe181"
],
"metanetx.chemical":[
"MNXM2150"
],
"sbo":"SBO:0000247"
}
},
{
"id":"clpn120_p",
"name":"Cardiolipin (tetradodecanoyl, n-C12:0)",
"compartment":"p",
"charge":-2,
"formula":"C57H108O17P2",
"notes":{
"original_bigg_ids":[
"clpn120_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn120"
],
"metanetx.chemical":[
"MNXM5078"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg120_p",
"name":"Phosphatidylglycerol (didodecanoyl, n-C12:0)",
"compartment":"p",
"charge":-1,
"formula":"C30H58O10P1",
"notes":{
"original_bigg_ids":[
"pg120_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg120"
],
"metanetx.chemical":[
"MNXM1771"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg140_p",
"name":"Phosphatidylglycerol (ditetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":-1,
"formula":"C34H66O10P1",
"notes":{
"original_bigg_ids":[
"pg140_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg140"
],
"biocyc":[
"META:CPD-19677"
],
"chebi":[
"CHEBI:60723"
],
"inchi_key":[
"BPHQZTVXXXJVHI-AJQTZOPKSA-M"
],
"lipidmaps":[
"LMGP04010005"
],
"metanetx.chemical":[
"MNXM51019"
],
"sbo":"SBO:0000247",
"slm":[
"000041313"
]
}
},
{
"id":"phenol_e",
"name":"Phenol",
"compartment":"e",
"formula":"C6H6O",
"notes":{
"original_bigg_ids":[
"phenol_e"
]
},
"annotation":{
"bigg.metabolite":[
"phenol"
],
"biocyc":[
"META:PHENOL"
],
"chebi":[
"CHEBI:43543",
"CHEBI:25966",
"CHEBI:50526",
"CHEBI:14777",
"CHEBI:8071",
"CHEBI:15882"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/3ba82340-8170-438e-a316-6d10935afeaa",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/83ab06b8-c17a-4882-bedd-667c38a40894",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/971dde96-4136-4e71-a986-5334007766b7",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a30eb8dd-0b96-4290-82ae-512efd6d36b7",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2b281578-ddae-4648-a03d-3922fb588bb0"
],
"hmdb":[
"HMDB00228"
],
"inchi_key":[
"ISWSIDIOOBJBQZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00146",
"C15584"
],
"kegg.drug":[
"D00033"
],
"metanetx.chemical":[
"MNXM320"
],
"reactome.compound":[
"29630",
"158858"
],
"sabiork":[
"1947"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00127"
]
}
},
{
"id":"clpn140_p",
"name":"Cardiolipin (tetratetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":-2,
"formula":"C65H124O17P2",
"notes":{
"original_bigg_ids":[
"clpn140_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn140"
],
"biocyc":[
"META:CPD-19676"
],
"chebi":[
"CHEBI:62862"
],
"inchi_key":[
"SDCJNZZAOLRVCP-GTOSQJSUSA-L"
],
"metanetx.chemical":[
"MNXM83974"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pi_e",
"name":"Phosphate",
"compartment":"e",
"charge":-2,
"formula":"HO4P",
"notes":{
"original_bigg_ids":[
"pi_e"
]
},
"annotation":{
"bigg.metabolite":[
"pi"
],
"biocyc":[
"META:Pi",
"META:CPD-16459",
"META:PHOSPHATE-GROUP"
],
"chebi":[
"CHEBI:26078",
"CHEBI:18367",
"CHEBI:29139",
"CHEBI:39739",
"CHEBI:43470",
"CHEBI:35780",
"CHEBI:43474",
"CHEBI:26020",
"CHEBI:45024",
"CHEBI:39745",
"CHEBI:29137",
"CHEBI:14791",
"CHEBI:7793"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/db5219ee-60cb-4370-b066-340c9faf069c",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/84684967-eade-48d4-b25d-c4aede0a0836",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/ad82c39b-2edb-4953-b971-79a2d2ea6e26",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/aac01fea-4223-49c1-8b12-cd50f11ebfc8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c581b2ce-6238-45de-abc0-60ca8d47ed04"
],
"hmdb":[
"HMDB02105",
"HMDB00973",
"HMDB01429",
"HMDB02142",
"HMDB05947"
],
"inchi_key":[
"NBIIXXVUZAFLBC-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00009"
],
"kegg.drug":[
"D05467"
],
"metanetx.chemical":[
"MNXM9"
],
"reactome.compound":[
"5228339",
"113550",
"8851513",
"113551",
"109277",
"29372",
"8851226",
"113548"
],
"sabiork":[
"36"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27787",
"cpd00009"
]
}
},
{
"id":"pg141_p",
"name":"Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":-1,
"formula":"C34H62O10P1",
"notes":{
"original_bigg_ids":[
"pg141_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg141"
],
"metanetx.chemical":[
"MNXM2029"
],
"sbo":"SBO:0000247"
}
},
{
"id":"clpn141_p",
"name":"Cardiolipin (tetratetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":-2,
"formula":"C65H116O17P2",
"notes":{
"original_bigg_ids":[
"clpn141_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn141"
],
"metanetx.chemical":[
"MNXM7149"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg160_p",
"name":"Phosphatidylglycerol (dihexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":-1,
"formula":"C38H74O10P1",
"notes":{
"original_bigg_ids":[
"pg160_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg160"
],
"biocyc":[
"META:CPD-8260"
],
"chebi":[
"CHEBI:73205",
"CHEBI:72829",
"CHEBI:75159"
],
"hmdb":[
"HMDB10570"
],
"inchi_key":[
"BIABMEZBCHDPBV-MPQUPPDSSA-M"
],
"lipidmaps":[
"LMGP04010986"
],
"metanetx.chemical":[
"MNXM32179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15538",
"cpd25117"
],
"slm":[
"000000812"
]
}
},
{
"id":"ppa_e",
"name":"Propionate (n-C3:0)",
"compartment":"e",
"charge":-1,
"formula":"C3H5O2",
"notes":{
"original_bigg_ids":[
"ppa_e"
]
},
"annotation":{
"bigg.metabolite":[
"ppa"
],
"metanetx.chemical":[
"MNXM162260"
],
"sbo":"SBO:0000247"
}
},
{
"id":"clpn160_p",
"name":"Cardiolipin (tetrahexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":-2,
"formula":"C73H140O17P2",
"notes":{
"original_bigg_ids":[
"clpn160_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn160"
],
"biocyc":[
"META:CPD-12824"
],
"chebi":[
"CHEBI:104586"
],
"hmdb":[
"HMDB56387"
],
"inchi_key":[
"GRTNLBQYBYZCCM-ULKDXPJMSA-L"
],
"lipidmaps":[
"LMGP12010007"
],
"metanetx.chemical":[
"MNXM45654"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15428",
"cpd23601"
]
}
},
{
"id":"ppoh_e",
"name":"1-Propanol",
"compartment":"e",
"formula":"C3H8O",
"notes":{
"original_bigg_ids":[
"ppoh_e"
]
},
"annotation":{
"bigg.metabolite":[
"ppoh"
],
"biocyc":[
"META:PROPANOL"
],
"chebi":[
"CHEBI:26278",
"CHEBI:44960",
"CHEBI:8472",
"CHEBI:28831"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/72f1dc7c-7d6f-44ab-8eb2-898c30996527"
],
"hmdb":[
"HMDB00820"
],
"inchi_key":[
"BDERNNFJNOPAEC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C05979"
],
"lipidmaps":[
"LMFA05000101"
],
"metanetx.chemical":[
"MNXM6396"
],
"sabiork":[
"2834"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03559"
]
}
},
{
"id":"pg161_p",
"name":"Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)",
"compartment":"p",
"charge":-1,
"formula":"C38H70O10P1",
"notes":{
"original_bigg_ids":[
"pg161_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg161"
],
"biocyc":[
"META:CPD0-2330"
],
"inchi_key":[
"GHQNERCMPIDAAU-ANXSUKRNSA-M"
],
"metanetx.chemical":[
"MNXM75101"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15539",
"cpd26463"
]
}
},
{
"id":"pta_e",
"name":"Pentanoate",
"compartment":"e",
"charge":-1,
"formula":"C5H9O2",
"notes":{
"original_bigg_ids":[
"pta_e"
]
},
"annotation":{
"bigg.metabolite":[
"pta"
],
"biocyc":[
"META:VALERATE"
],
"chebi":[
"CHEBI:25890",
"CHEBI:7980",
"CHEBI:27263",
"CHEBI:27264",
"CHEBI:44803",
"CHEBI:17418",
"CHEBI:31011",
"CHEBI:113448",
"CHEBI:43606",
"CHEBI:14751"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/7e9f4e30-295c-4536-b90c-9bfbacbed726"
],
"hmdb":[
"HMDB00892"
],
"inchi_key":[
"NQPDZGIKBAWPEJ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00803"
],
"lipidmaps":[
"LMFA01010005"
],
"metanetx.chemical":[
"MNXM3382"
],
"sabiork":[
"2161"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00597"
]
}
},
{
"id":"clpn161_p",
"name":"Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)",
"compartment":"p",
"charge":-2,
"formula":"C73H132O17P2",
"notes":{
"original_bigg_ids":[
"clpn161_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn161"
],
"biocyc":[
"META:CPD-19674"
],
"chebi":[
"CHEBI:104873"
],
"inchi_key":[
"UYSHBKYVDAZLKJ-GMUISZSCSA-L"
],
"metanetx.chemical":[
"MNXM4501"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg180_p",
"name":"Phosphatidylglycerol (dioctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":-1,
"formula":"C42H82O10P1",
"notes":{
"original_bigg_ids":[
"pg180_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg180"
],
"biocyc":[
"META:CPD-12822"
],
"hmdb":[
"HMDB10602"
],
"inchi_key":[
"FVJZSBGHRPJMMA-IOLBBIBUSA-M"
],
"lipidmaps":[
"LMGP04010038"
],
"metanetx.chemical":[
"MNXM75102"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15540",
"cpd23600"
],
"slm":[
"000041308"
]
}
},
{
"id":"clpn180_p",
"name":"Cardiolipin (tetraoctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":-2,
"formula":"C81H156O17P2",
"notes":{
"original_bigg_ids":[
"clpn180_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn180"
],
"metanetx.chemical":[
"MNXM5079"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg181_p",
"name":"Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":-1,
"formula":"C42H78O10P1",
"notes":{
"original_bigg_ids":[
"pg181_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg181"
],
"biocyc":[
"META:CPD-18396"
],
"metanetx.chemical":[
"MNXM1773"
],
"sbo":"SBO:0000247",
"slm":[
"000041239"
]
}
},
{
"id":"pyr_e",
"name":"Pyruvate",
"compartment":"e",
"charge":-1,
"formula":"C3H3O3",
"notes":{
"original_bigg_ids":[
"pyr_e"
]
},
"annotation":{
"bigg.metabolite":[
"pyr"
],
"biocyc":[
"META:PYRUVATE"
],
"chebi":[
"CHEBI:26462",
"CHEBI:26466",
"CHEBI:8685",
"CHEBI:32816",
"CHEBI:45253",
"CHEBI:14987",
"CHEBI:15361"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ccc99777-54dc-42d4-a97e-009b780d3905",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc01020e-8c7e-4087-9f56-cf8c962b7437"
],
"hmdb":[
"HMDB00243"
],
"inchi_key":[
"LCTONWCANYUPML-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00022"
],
"lipidmaps":[
"LMFA01060077"
],
"metanetx.chemical":[
"MNXM23"
],
"reactome.compound":[
"1130930",
"5357717",
"113557",
"29398",
"389680"
],
"sabiork":[
"33"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00020"
]
}
},
{
"id":"clpn181_p",
"name":"Cardiolipin (tetraoctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":-2,
"formula":"C81H148O17P2",
"notes":{
"original_bigg_ids":[
"clpn181_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn181"
],
"biocyc":[
"META:CPD-19675"
],
"chebi":[
"CHEBI:105685"
],
"inchi_key":[
"HSSSADMXQPKIEB-GXYAQEMJSA-L"
],
"metanetx.chemical":[
"MNXM4503"
],
"sbo":"SBO:0000247"
}
},
{
"id":"so3_e",
"name":"Sulfite",
"compartment":"e",
"charge":-2,
"formula":"O3S",
"notes":{
"original_bigg_ids":[
"so3_e"
]
},
"annotation":{
"bigg.metabolite":[
"so3"
],
"biocyc":[
"META:H2SO3",
"META:HSO3",
"META:SO3"
],
"chebi":[
"CHEBI:15139",
"CHEBI:17137",
"CHEBI:45548",
"CHEBI:48854",
"CHEBI:26837",
"CHEBI:9344",
"CHEBI:5598",
"CHEBI:29214",
"CHEBI:13367",
"CHEBI:17359",
"CHEBI:33543"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/0382072e-fc0c-41a7-be8d-fce140ecf836",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2bf998e0-031f-4353-bbd0-d9c0af36460e"
],
"hmdb":[
"HMDB34829",
"HMDB03008",
"HMDB01033",
"HMDB00240"
],
"inchi_key":[
"LSNNMFCWUKXFEE-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00094",
"C11481"
],
"metanetx.chemical":[
"MNXM105630"
],
"sabiork":[
"3059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00081"
]
}
},
{
"id":"pgp120_p",
"name":"Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)",
"compartment":"p",
"charge":-3,
"formula":"C30H57O13P2",
"notes":{
"original_bigg_ids":[
"pgp120_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp120"
],
"metanetx.chemical":[
"MNXM5266"
],
"sbo":"SBO:0000247"
}
},
{
"id":"co2_p",
"name":"CO2 CO2",
"compartment":"p",
"formula":"CO2",
"notes":{
"original_bigg_ids":[
"co2_p"
]
},
"annotation":{
"bigg.metabolite":[
"co2"
],
"biocyc":[
"META:CARBON-DIOXIDE"
],
"chebi":[
"CHEBI:23011",
"CHEBI:3283",
"CHEBI:48829",
"CHEBI:16526",
"CHEBI:13283",
"CHEBI:13285",
"CHEBI:13284",
"CHEBI:13282"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2ec3da94-5f50-4525-81b1-5607c5c7a3d3",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379"
],
"hmdb":[
"HMDB01967"
],
"inchi_key":[
"CURLTUGMZLYLDI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00011"
],
"kegg.drug":[
"D00004"
],
"metanetx.chemical":[
"MNXM13"
],
"reactome.compound":[
"29376",
"5668565",
"189480",
"1132345",
"113528",
"1237009",
"159751",
"389536",
"159942"
],
"sabiork":[
"1266"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00011"
]
}
},
{
"id":"pgp140_p",
"name":"Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":-3,
"formula":"C34H65O13P2",
"notes":{
"original_bigg_ids":[
"pgp140_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp140"
],
"metanetx.chemical":[
"MNXM5272"
],
"sbo":"SBO:0000247"
}
},
{
"id":"so4_e",
"name":"Sulfate",
"compartment":"e",
"charge":-2,
"formula":"O4S",
"notes":{
"original_bigg_ids":[
"so4_e"
]
},
"annotation":{
"bigg.metabolite":[
"so4"
],
"biocyc":[
"META:SULFATE",
"META:HSO4"
],
"chebi":[
"CHEBI:15135",
"CHEBI:45693",
"CHEBI:29199",
"CHEBI:9335",
"CHEBI:16189",
"CHEBI:45687",
"CHEBI:26836",
"CHEBI:45696"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/cf4fcd19-f2cb-4d92-aa67-323762e3b269"
],
"hmdb":[
"HMDB01448"
],
"inchi_key":[
"QAOWNCQODCNURD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00059"
],
"kegg.drug":[
"D05963"
],
"metanetx.chemical":[
"MNXM58"
],
"reactome.compound":[
"174375",
"1606845",
"1609649",
"1614584",
"427648"
],
"sabiork":[
"1759"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29301",
"cpd00048"
]
}
},
{
"id":"cobalt2_p",
"name":"Co2+",
"compartment":"p",
"charge":2,
"formula":"Co",
"notes":{
"original_bigg_ids":[
"cobalt2_p"
]
},
"annotation":{
"bigg.metabolite":[
"cobalt2"
],
"biocyc":[
"META:CO+2"
],
"chebi":[
"CHEBI:48828",
"CHEBI:48827",
"CHEBI:23337"
],
"hmdb":[
"HMDB00608"
],
"inchi_key":[
"XLJKHNWPARRRJB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00175"
],
"metanetx.chemical":[
"MNXM90960"
],
"sabiork":[
"23"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00149"
]
}
},
{
"id":"sulfac_e",
"name":"Sulfoacetate",
"compartment":"e",
"charge":-2,
"formula":"C2H2O5S",
"notes":{
"original_bigg_ids":[
"sulfac_e"
]
},
"annotation":{
"bigg.metabolite":[
"sulfac"
],
"biocyc":[
"META:CPD-10246"
],
"chebi":[
"CHEBI:34987",
"CHEBI:49876",
"CHEBI:58824",
"CHEBI:50519"
],
"inchi_key":[
"AGGIJOLULBJGTQ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C14179"
],
"metanetx.chemical":[
"MNXM1949"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd09878"
]
}
},
{
"id":"pgp141_p",
"name":"Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":-3,
"formula":"C34H61O13P2",
"notes":{
"original_bigg_ids":[
"pgp141_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp141"
],
"metanetx.chemical":[
"MNXM5271"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pgp160_p",
"name":"Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":-3,
"formula":"C38H73O13P2",
"notes":{
"original_bigg_ids":[
"pgp160_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp160"
],
"biocyc":[
"META:CPD-12821"
],
"hmdb":[
"HMDB13472"
],
"inchi_key":[
"ONJBJMDJKLHMEK-MPQUPPDSSA-K"
],
"metanetx.chemical":[
"MNXM32180"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15545",
"cpd23599"
],
"slm":[
"000475616"
]
}
},
{
"id":"cro4_p",
"name":"Chromate",
"compartment":"p",
"charge":-2,
"formula":"CrO4",
"notes":{
"original_bigg_ids":[
"cro4_p"
]
},
"annotation":{
"bigg.metabolite":[
"cro4"
],
"biocyc":[
"META:CPD-4422"
],
"chebi":[
"CHEBI:35404",
"CHEBI:33143",
"CHEBI:29393",
"CHEBI:23231",
"CHEBI:33144"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fb82e131-f9c0-4b6f-9803-de9e564de14b"
],
"inchi_key":[
"ZCDOYSPFYFSLEW-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM46638"
],
"sabiork":[
"18805"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11595"
]
}
},
{
"id":"pgp161_p",
"name":"Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)",
"compartment":"p",
"charge":-3,
"formula":"C38H69O13P2",
"notes":{
"original_bigg_ids":[
"pgp161_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp161"
],
"biocyc":[
"META:CPD0-2230"
],
"inchi_key":[
"PTJJTQQVMKSSOK-WXUKJITCSA-K"
],
"metanetx.chemical":[
"MNXM75103"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15546",
"cpd26451"
]
}
},
{
"id":"taur_e",
"name":"Taurine C2H7NO3S",
"compartment":"e",
"formula":"C2H7NO3S",
"notes":{
"original_bigg_ids":[
"taur_e"
]
},
"annotation":{
"bigg.metabolite":[
"taur"
],
"biocyc":[
"META:TAURINE"
],
"chebi":[
"CHEBI:32970",
"CHEBI:507393",
"CHEBI:9406",
"CHEBI:26852",
"CHEBI:15891",
"CHEBI:15195",
"CHEBI:45877"
],
"hmdb":[
"HMDB00251"
],
"inchi_key":[
"XOAAWQZATWQOTB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00245"
],
"kegg.drug":[
"D00047"
],
"metanetx.chemical":[
"MNXM282"
],
"reactome.compound":[
"193463",
"194069",
"159420"
],
"sabiork":[
"1989"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00210"
]
}
},
{
"id":"cu_p",
"name":"Cu+",
"compartment":"p",
"charge":1,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu_p"
]
},
"annotation":{
"bigg.metabolite":[
"cu"
],
"biocyc":[
"META:CU+"
],
"chebi":[
"CHEBI:49551",
"CHEBI:49552",
"CHEBI:23379"
],
"inchi_key":[
"VMQMZMRVKUZKQL-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM3568"
],
"sabiork":[
"20"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30760"
]
}
},
{
"id":"tc4_e",
"name":"Technetium(IV)",
"compartment":"e",
"charge":4,
"formula":"Tc",
"notes":{
"original_bigg_ids":[
"tc4_e"
]
},
"annotation":{
"bigg.metabolite":[
"tc4"
],
"metanetx.chemical":[
"MNXM147611"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tc7_e",
"name":"Technetium(VII)",
"compartment":"e",
"charge":7,
"formula":"Tc",
"notes":{
"original_bigg_ids":[
"tc7_e"
]
},
"annotation":{
"bigg.metabolite":[
"tc7"
],
"metanetx.chemical":[
"MNXM147612"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pgp180_p",
"name":"Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":-3,
"formula":"C42H81O13P2",
"notes":{
"original_bigg_ids":[
"pgp180_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp180"
],
"biocyc":[
"META:CPD-12820"
],
"hmdb":[
"HMDB13504"
],
"inchi_key":[
"UZNYMWWMHBZMLI-IOLBBIBUSA-K"
],
"metanetx.chemical":[
"MNXM75104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23598",
"cpd15547"
],
"slm":[
"000475620"
]
}
},
{
"id":"cu2_p",
"name":"Copper",
"compartment":"p",
"charge":2,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu2_p"
]
},
"annotation":{
"bigg.metabolite":[
"cu2"
],
"biocyc":[
"META:CU+2"
],
"chebi":[
"CHEBI:29036",
"CHEBI:23380",
"CHEBI:49550",
"CHEBI:20882"
],
"hmdb":[
"HMDB00657"
],
"inchi_key":[
"JPVYNHNXODAKFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00070"
],
"metanetx.chemical":[
"MNXM632"
],
"reactome.compound":[
"437295",
"936901",
"209799"
],
"sabiork":[
"19"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00058"
]
}
},
{
"id":"pgp181_p",
"name":"Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":-3,
"formula":"C42H77O13P2",
"notes":{
"original_bigg_ids":[
"pgp181_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp181"
],
"metanetx.chemical":[
"MNXM5269"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dca_p",
"name":"Decanoate (n-C10:0)",
"compartment":"p",
"charge":-1,
"formula":"C10H19O2",
"notes":{
"original_bigg_ids":[
"dca_p"
]
},
"annotation":{
"bigg.metabolite":[
"dca"
],
"metanetx.chemical":[
"MNXM162295"
],
"sbo":"SBO:0000247"
}
},
{
"id":"phenol_p",
"name":"Phenol",
"compartment":"p",
"formula":"C6H6O",
"notes":{
"original_bigg_ids":[
"phenol_p"
]
},
"annotation":{
"bigg.metabolite":[
"phenol"
],
"biocyc":[
"META:PHENOL"
],
"chebi":[
"CHEBI:43543",
"CHEBI:25966",
"CHEBI:50526",
"CHEBI:14777",
"CHEBI:8071",
"CHEBI:15882"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/3ba82340-8170-438e-a316-6d10935afeaa",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/83ab06b8-c17a-4882-bedd-667c38a40894",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/971dde96-4136-4e71-a986-5334007766b7",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a30eb8dd-0b96-4290-82ae-512efd6d36b7",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2b281578-ddae-4648-a03d-3922fb588bb0"
],
"hmdb":[
"HMDB00228"
],
"inchi_key":[
"ISWSIDIOOBJBQZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00146",
"C15584"
],
"kegg.drug":[
"D00033"
],
"metanetx.chemical":[
"MNXM320"
],
"reactome.compound":[
"29630",
"158858"
],
"sabiork":[
"1947"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00127"
]
}
},
{
"id":"tol_e",
"name":"Toluene",
"compartment":"e",
"formula":"C7H8",
"notes":{
"original_bigg_ids":[
"tol_e"
]
},
"annotation":{
"bigg.metabolite":[
"tol"
],
"biocyc":[
"META:TOLUENE"
],
"chebi":[
"CHEBI:17578",
"CHEBI:15248",
"CHEBI:44023",
"CHEBI:27022",
"CHEBI:9624"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/cf365fd4-4d73-4d8e-a7b3-394c9c524dcf"
],
"hmdb":[
"HMDB34168"
],
"inchi_key":[
"YXFVVABEGXRONW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01455"
],
"metanetx.chemical":[
"MNXM889"
],
"sabiork":[
"5591"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01034"
]
}
},
{
"id":"ddca_p",
"name":"Dodecanoate (n-C12:0)",
"compartment":"p",
"charge":-1,
"formula":"C12H23O2",
"notes":{
"original_bigg_ids":[
"ddca_p"
]
},
"annotation":{
"bigg.metabolite":[
"ddca"
],
"metanetx.chemical":[
"MNXM162258"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tsul_e",
"name":"Thiosulfate",
"compartment":"e",
"charge":-2,
"formula":"O3S2",
"notes":{
"original_bigg_ids":[
"tsul_e"
]
},
"annotation":{
"bigg.metabolite":[
"tsul"
],
"biocyc":[
"META:S2O3"
],
"chebi":[
"CHEBI:33540",
"CHEBI:33539",
"CHEBI:9569",
"CHEBI:26977",
"CHEBI:33541",
"CHEBI:15242",
"CHEBI:16094",
"CHEBI:29279",
"CHEBI:45922",
"CHEBI:5587",
"CHEBI:33542"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/32b1f2ad-32ba-4271-9c86-f4bb1c35e35d"
],
"hmdb":[
"HMDB00257",
"HMDB60293"
],
"inchi_key":[
"DHCDFWKWKRSZHF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05529",
"C00320"
],
"metanetx.chemical":[
"MNXM323"
],
"reactome.compound":[
"1614595"
],
"sabiork":[
"5043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00268"
]
}
},
{
"id":"pi_p",
"name":"Phosphate",
"compartment":"p",
"charge":-2,
"formula":"HO4P",
"notes":{
"original_bigg_ids":[
"pi_p"
]
},
"annotation":{
"bigg.metabolite":[
"pi"
],
"biocyc":[
"META:Pi",
"META:CPD-16459",
"META:PHOSPHATE-GROUP"
],
"chebi":[
"CHEBI:26078",
"CHEBI:18367",
"CHEBI:29139",
"CHEBI:39739",
"CHEBI:43470",
"CHEBI:35780",
"CHEBI:43474",
"CHEBI:26020",
"CHEBI:45024",
"CHEBI:39745",
"CHEBI:29137",
"CHEBI:14791",
"CHEBI:7793"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/db5219ee-60cb-4370-b066-340c9faf069c",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/84684967-eade-48d4-b25d-c4aede0a0836",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/ad82c39b-2edb-4953-b971-79a2d2ea6e26",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/aac01fea-4223-49c1-8b12-cd50f11ebfc8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c581b2ce-6238-45de-abc0-60ca8d47ed04"
],
"hmdb":[
"HMDB02105",
"HMDB00973",
"HMDB01429",
"HMDB02142",
"HMDB05947"
],
"inchi_key":[
"NBIIXXVUZAFLBC-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00009"
],
"kegg.drug":[
"D05467"
],
"metanetx.chemical":[
"MNXM9"
],
"reactome.compound":[
"5228339",
"113550",
"8851513",
"113551",
"109277",
"29372",
"8851226",
"113548"
],
"sabiork":[
"36"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27787",
"cpd00009"
]
}
},
{
"id":"ethso3_p",
"name":"Ethanesulfonate",
"compartment":"p",
"charge":-1,
"formula":"C2H5O3S",
"notes":{
"original_bigg_ids":[
"ethso3_p"
]
},
"annotation":{
"bigg.metabolite":[
"ethso3"
],
"biocyc":[
"META:CPD-10434"
],
"chebi":[
"CHEBI:61909",
"CHEBI:42465"
],
"inchi_key":[
"CCIVGXIOQKPBKL-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM7343"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11579"
]
}
},
{
"id":"ppa_p",
"name":"Propionate (n-C3:0)",
"compartment":"p",
"charge":-1,
"formula":"C3H5O2",
"notes":{
"original_bigg_ids":[
"ppa_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppa"
],
"metanetx.chemical":[
"MNXM162260"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ttdca_e",
"name":"Tetradecanoate (n-C14:0)",
"compartment":"e",
"charge":-1,
"formula":"C14H27O2",
"notes":{
"original_bigg_ids":[
"ttdca_e"
]
},
"annotation":{
"bigg.metabolite":[
"ttdca"
],
"metanetx.chemical":[
"MNXM162239"
],
"sbo":"SBO:0000247"
}
},
{
"id":"etoh_p",
"name":"Ethanol",
"compartment":"p",
"formula":"C2H6O",
"notes":{
"original_bigg_ids":[
"etoh_p"
]
},
"annotation":{
"bigg.metabolite":[
"etoh"
],
"biocyc":[
"META:ETOH"
],
"chebi":[
"CHEBI:42377",
"CHEBI:23978",
"CHEBI:30880",
"CHEBI:16236",
"CHEBI:52092",
"CHEBI:30878",
"CHEBI:4879",
"CHEBI:44594",
"CHEBI:14222"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a354fd-5003-4b7b-b11b-f54204aea384",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f89efe7c-1a6a-4d21-b99c-e3e1070a8062",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/56e18a05-c059-433a-94f6-0e26c01b010f",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9fb1fbdf-101b-4b82-a596-d2f52c870e4f"
],
"hmdb":[
"HMDB00108"
],
"inchi_key":[
"LFQSCWFLJHTTHZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00469"
],
"kegg.drug":[
"D06542",
"D02798",
"D00068",
"D04855"
],
"metanetx.chemical":[
"MNXM303"
],
"reactome.compound":[
"113748",
"30203"
],
"sabiork":[
"56"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00363"
]
}
},
{
"id":"ttdcea_e",
"name":"Tetradecenoate (n-C14:1)",
"compartment":"e",
"charge":-1,
"formula":"C14H25O2",
"notes":{
"original_bigg_ids":[
"ttdcea_e"
]
},
"annotation":{
"bigg.metabolite":[
"ttdcea"
],
"metanetx.chemical":[
"MNXM641"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ppc1o_p",
"name":"Periplasmic cytochromes c type oxidized 1",
"compartment":"p",
"charge":3,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"ppc1o_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppc1o"
],
"metanetx.chemical":[
"MNXM148423"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fe2_p",
"name":"Fe2+ mitochondria",
"compartment":"p",
"charge":2,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe2_p"
]
},
"annotation":{
"bigg.metabolite":[
"fe2"
],
"biocyc":[
"META:FE+2"
],
"chebi":[
"CHEBI:29033",
"CHEBI:49599",
"CHEBI:13321",
"CHEBI:21129",
"CHEBI:13319",
"CHEBI:24876",
"CHEBI:34754"
],
"hmdb":[
"HMDB00692"
],
"inchi_key":[
"CWYNVVGOOAEACU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14818"
],
"metanetx.chemical":[
"MNXM111"
],
"sabiork":[
"1275"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10515"
]
}
},
{
"id":"ppc1r_p",
"name":"Perimplasmic cytochromes c type reduced 1",
"compartment":"p",
"charge":2,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"ppc1r_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppc1r"
],
"metanetx.chemical":[
"MNXM148422"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tungs_e",
"name":"Tungstate",
"compartment":"e",
"charge":-2,
"formula":"O4W1",
"notes":{
"original_bigg_ids":[
"tungs_e"
]
},
"annotation":{
"bigg.metabolite":[
"tungs"
],
"biocyc":[
"META:TUNGSTATE"
],
"chebi":[
"CHEBI:36271",
"CHEBI:30518",
"CHEBI:36272",
"CHEBI:46497",
"CHEBI:46502"
],
"inchi_key":[
"PBYZMCDFOULPGH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C20679"
],
"metanetx.chemical":[
"MNXM88308"
],
"sabiork":[
"18862"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15574"
]
}
},
{
"id":"fe3_p",
"name":"Iron (Fe3+)",
"compartment":"p",
"charge":3,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe3_p"
]
},
"annotation":{
"bigg.metabolite":[
"fe3"
],
"biocyc":[
"META:FE+3"
],
"chebi":[
"CHEBI:49595",
"CHEBI:13320",
"CHEBI:24877",
"CHEBI:21130",
"CHEBI:29034",
"CHEBI:34755"
],
"hmdb":[
"HMDB12943"
],
"inchi_key":[
"VTLYFUHAOXGGBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14819"
],
"metanetx.chemical":[
"MNXM196"
],
"reactome.compound":[
"917966",
"111736",
"917943",
"912519",
"912516"
],
"sabiork":[
"1361"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10516"
]
}
},
{
"id":"u4_e",
"name":"Uranium(IV)",
"compartment":"e",
"charge":4,
"formula":"U",
"notes":{
"original_bigg_ids":[
"u4_e"
]
},
"annotation":{
"bigg.metabolite":[
"u4"
],
"metanetx.chemical":[
"MNXM147618"
],
"sbo":"SBO:0000247"
}
},
{
"id":"u6_e",
"name":"Uranium(VI)",
"compartment":"e",
"charge":6,
"formula":"U",
"notes":{
"original_bigg_ids":[
"u6_e"
]
},
"annotation":{
"bigg.metabolite":[
"u6"
],
"metanetx.chemical":[
"MNXM147619"
],
"sbo":"SBO:0000247"
}
},
{
"id":"v4_e",
"name":"Vanadium(IV)",
"compartment":"e",
"charge":4,
"formula":"V",
"notes":{
"original_bigg_ids":[
"v4_e"
]
},
"annotation":{
"bigg.metabolite":[
"v4"
],
"metanetx.chemical":[
"MNXM148556"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ppco_p",
"name":"Periplasmic cytochromes c type oxidized",
"compartment":"p",
"charge":3,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"ppco_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppco"
],
"metanetx.chemical":[
"MNXM146440"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ppcr_p",
"name":"Periplasmic cytochromes c type - reduced",
"compartment":"p",
"charge":2,
"formula":"C42H54FeN8O6S2",
"notes":{
"original_bigg_ids":[
"ppcr_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppcr"
],
"metanetx.chemical":[
"MNXM146439"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ppoh_p",
"name":"1-Propanol",
"compartment":"p",
"formula":"C3H8O",
"notes":{
"original_bigg_ids":[
"ppoh_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppoh"
],
"biocyc":[
"META:PROPANOL"
],
"chebi":[
"CHEBI:26278",
"CHEBI:44960",
"CHEBI:8472",
"CHEBI:28831"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/72f1dc7c-7d6f-44ab-8eb2-898c30996527"
],
"hmdb":[
"HMDB00820"
],
"inchi_key":[
"BDERNNFJNOPAEC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C05979"
],
"lipidmaps":[
"LMFA05000101"
],
"metanetx.chemical":[
"MNXM6396"
],
"sabiork":[
"2834"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03559"
]
}
},
{
"id":"for_p",
"name":"Formate",
"compartment":"p",
"charge":-1,
"formula":"CH1O2",
"notes":{
"original_bigg_ids":[
"for_p"
]
},
"annotation":{
"bigg.metabolite":[
"for"
],
"biocyc":[
"META:CPD1G-1532",
"META:CPD1G-1535",
"META:FORMATE",
"META:CPD-9845",
"META:CPD1G-1534",
"META:CARBOXYL-GROUP",
"META:CPD1G-1533"
],
"chebi":[
"CHEBI:24081",
"CHEBI:30751",
"CHEBI:15740",
"CHEBI:5145",
"CHEBI:42460",
"CHEBI:14276",
"CHEBI:24082"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a9d20ae-b6ec-40a9-93ca-1de20597b1ed",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09c1ad08-016e-4477-8840-b97a031eae23",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/bf16ab32-cb3c-4427-a65a-089ab754823e",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/34fe3cd9-9b0b-46b0-a1c5-8a66509f1919",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1d077cf2-3f9f-4163-aa49-0fca1b2b3ab3"
],
"hmdb":[
"HMDB00142"
],
"inchi_key":[
"BDAGIHXWWSANSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00058"
],
"metanetx.chemical":[
"MNXM39"
],
"reactome.compound":[
"29460",
"194712",
"389585",
"6801451"
],
"sabiork":[
"1285"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00047",
"cpd22511"
]
}
},
{
"id":"ps120_p",
"name":"Phosphatidylserine (didodecanoyl, n-C12:0)",
"compartment":"p",
"charge":-1,
"formula":"C30H57N1O10P1",
"notes":{
"original_bigg_ids":[
"ps120_p"
]
},
"annotation":{
"bigg.metabolite":[
"ps120"
],
"metanetx.chemical":[
"MNXM7659"
],
"sbo":"SBO:0000247"
}
},
{
"id":"v5_e",
"name":"Vanadium(V)",
"compartment":"e",
"charge":5,
"formula":"V",
"notes":{
"original_bigg_ids":[
"v5_e"
]
},
"annotation":{
"bigg.metabolite":[
"v5"
],
"metanetx.chemical":[
"MNXM148557"
],
"sbo":"SBO:0000247"
}
},
{
"id":"galur_p",
"name":"D-Galacturonate",
"compartment":"p",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"galur_p"
]
},
"annotation":{
"bigg.metabolite":[
"galur"
],
"biocyc":[
"META:D-Galactopyranuronate"
],
"chebi":[
"CHEBI:20978",
"CHEBI:4153",
"CHEBI:18024",
"CHEBI:20976",
"CHEBI:75525"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-YMDCURPLSA-M"
],
"kegg.compound":[
"C00333"
],
"metanetx.chemical":[
"MNXM48464"
],
"sabiork":[
"2020"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00280"
]
}
},
{
"id":"val__L_e",
"name":"L-Valine",
"compartment":"e",
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"val_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"val__L"
],
"biocyc":[
"META:VAL"
],
"chebi":[
"CHEBI:32859",
"CHEBI:57762",
"CHEBI:13186",
"CHEBI:16414",
"CHEBI:6321",
"CHEBI:21417",
"CHEBI:46418",
"CHEBI:46282",
"CHEBI:32852",
"CHEBI:32851",
"CHEBI:87977",
"CHEBI:32860",
"CHEBI:27266",
"CHEBI:46376",
"CHEBI:46484"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b2ec1d47-f20f-4b19-9b15-ac1a3c2159c5",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/65a4c231-5232-4f08-93e2-007eb0537f0e"
],
"hmdb":[
"HMDB00883",
"HMDB34366"
],
"inchi_key":[
"KZSNJWFQEVHDMF-BYPYZUCNSA-N"
],
"kegg.compound":[
"C16436",
"C00183"
],
"kegg.drug":[
"D00039"
],
"lipidmaps":[
"LMFA01100046"
],
"metanetx.chemical":[
"MNXM199"
],
"reactome.compound":[
"113540",
"29702"
],
"sabiork":[
"68",
"23113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15141",
"cpd00156"
]
}
},
{
"id":"ps140_p",
"name":"Phosphatidylserine (ditetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":-1,
"formula":"C34H65N1O10P1",
"notes":{
"original_bigg_ids":[
"ps140_p"
]
},
"annotation":{
"bigg.metabolite":[
"ps140"
],
"metanetx.chemical":[
"MNXM7665"
],
"sbo":"SBO:0000247"
}
},
{
"id":"glcur_p",
"name":"D-Glucuronate",
"compartment":"p",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"glcur_p"
]
},
"annotation":{
"bigg.metabolite":[
"glcur"
],
"biocyc":[
"META:D-Glucopyranuronate"
],
"chebi":[
"CHEBI:12975",
"CHEBI:24297",
"CHEBI:21013",
"CHEBI:47952",
"CHEBI:24298",
"CHEBI:4178",
"CHEBI:58720",
"CHEBI:15748"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-AQKNRBDQSA-M"
],
"kegg.compound":[
"C00191"
],
"metanetx.chemical":[
"MNXM241"
],
"sabiork":[
"26257"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00164"
]
}
},
{
"id":"ps141_p",
"name":"Phosphatidylserine (ditetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":-1,
"formula":"C34H61N1O10P1",
"notes":{
"original_bigg_ids":[
"ps141_p"
]
},
"annotation":{
"bigg.metabolite":[
"ps141"
],
"metanetx.chemical":[
"MNXM7664"
],
"sbo":"SBO:0000247"
}
},
{
"id":"zn2_e",
"name":"Zinc",
"compartment":"e",
"charge":2,
"formula":"Zn",
"notes":{
"original_bigg_ids":[
"zn2_e"
]
},
"annotation":{
"bigg.metabolite":[
"zn2"
],
"biocyc":[
"META:ZN+2"
],
"chebi":[
"CHEBI:49982",
"CHEBI:49972",
"CHEBI:29105",
"CHEBI:27368",
"CHEBI:10113"
],
"hmdb":[
"HMDB01303"
],
"inchi_key":[
"PTFCDOFLOPIGGS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00038"
],
"metanetx.chemical":[
"MNXM149"
],
"reactome.compound":[
"216667",
"437093",
"29426",
"216785",
"435350",
"442320",
"158417"
],
"sabiork":[
"1281"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00034"
]
}
},
{
"id":"ps160_p",
"name":"Phosphatidylserine (dihexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":-1,
"formula":"C38H73N1O10P1",
"notes":{
"original_bigg_ids":[
"ps160_p"
]
},
"annotation":{
"bigg.metabolite":[
"ps160"
],
"biocyc":[
"META:CPD-12817"
],
"chebi":[
"CHEBI:84523",
"CHEBI:111515"
],
"hmdb":[
"HMDB00614"
],
"inchi_key":[
"KLFKZIQAIPDJCW-GPOMZPHUSA-M"
],
"lipidmaps":[
"LMGP03010029"
],
"metanetx.chemical":[
"MNXM32181"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23595",
"cpd15555"
],
"slm":[
"000005400"
]
}
},
{
"id":"glyc_p",
"name":"Glycerol",
"compartment":"p",
"formula":"C3H8O3",
"notes":{
"original_bigg_ids":[
"glyc_p"
]
},
"annotation":{
"bigg.metabolite":[
"glyc"
],
"biocyc":[
"META:GLYCEROL"
],
"chebi":[
"CHEBI:5448",
"CHEBI:14334",
"CHEBI:42998",
"CHEBI:17754",
"CHEBI:24351",
"CHEBI:131422"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/48edd8a9-6a4a-4900-b0cf-97b1ccaa1125",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2e8c8093-3269-46b3-be2e-f1df9fdde25c"
],
"hmdb":[
"HMDB00131"
],
"inchi_key":[
"PEDCQBHIVMGVHV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00116"
],
"kegg.drug":[
"D00028"
],
"metanetx.chemical":[
"MNXM89612"
],
"reactome.compound":[
"192438",
"76116"
],
"sabiork":[
"1303"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00100"
]
}
},
{
"id":"2obut_p",
"name":"2-Oxobutanoate",
"compartment":"p",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"_2obut_p"
]
},
"annotation":{
"bigg.metabolite":[
"2obut"
],
"biocyc":[
"META:2-OXOBUTANOATE"
],
"chebi":[
"CHEBI:1250",
"CHEBI:16763",
"CHEBI:19741",
"CHEBI:30831",
"CHEBI:11636",
"CHEBI:39748",
"CHEBI:19743"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1d8dba15-23b7-4916-91ba-3b00be5e4e8b",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/86a149cf-c031-463b-aa33-253fcbde268f"
],
"hmdb":[
"HMDB00005",
"HMDB06544"
],
"inchi_key":[
"TYEYBOSBBBHJIV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00109"
],
"lipidmaps":[
"LMFA01060002"
],
"metanetx.chemical":[
"MNXM159"
],
"reactome.compound":[
"936714"
],
"sabiork":[
"1934"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00094"
]
}
},
{
"id":"ps161_p",
"name":"Phosphatidylserine (dihexadec-9-enoyl, n-C16:1)",
"compartment":"p",
"charge":-1,
"formula":"C38H69N1O10P1",
"notes":{
"original_bigg_ids":[
"ps161_p"
]
},
"annotation":{
"bigg.metabolite":[
"ps161"
],
"metanetx.chemical":[
"MNXM7660"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gm1lipa_p",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A (G. metallireducens, variant 1)",
"compartment":"p",
"charge":-4,
"formula":"C142H253N3O65P2",
"notes":{
"original_bigg_ids":[
"gm1lipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"gm1lipa"
],
"metanetx.chemical":[
"MNXM146508"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ps180_p",
"name":"Phosphatidylserine (dioctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":-1,
"formula":"C42H81N1O10P1",
"notes":{
"original_bigg_ids":[
"ps180_p"
]
},
"annotation":{
"bigg.metabolite":[
"ps180"
],
"biocyc":[
"META:CPD-12816"
],
"chebi":[
"CHEBI:84519"
],
"hmdb":[
"HMDB12378"
],
"inchi_key":[
"TZCPCKNHXULUIY-RGULYWFUSA-M"
],
"lipidmaps":[
"LMGP03010036"
],
"metanetx.chemical":[
"MNXM75116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15557",
"cpd23594"
],
"slm":[
"000005403"
]
}
},
{
"id":"3mb_p",
"name":"3-Methylbutanoic acid",
"compartment":"p",
"charge":-1,
"formula":"C5H9O2",
"notes":{
"original_bigg_ids":[
"_3mb_p"
]
},
"annotation":{
"bigg.metabolite":[
"3mb"
],
"biocyc":[
"META:ISOVALERATE"
],
"chebi":[
"CHEBI:24930",
"CHEBI:48942",
"CHEBI:6069",
"CHEBI:43426",
"CHEBI:28484"
],
"hmdb":[
"HMDB00718"
],
"inchi_key":[
"GWYFCOCPABKNJV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C08262"
],
"lipidmaps":[
"LMFA01020181"
],
"metanetx.chemical":[
"MNXM7454"
],
"sabiork":[
"10362"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd05178"
]
}
},
{
"id":"gm2lipa_p",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A (G. metallireducens, variant 2)",
"compartment":"p",
"charge":-4,
"formula":"C142H255N5O63P2",
"notes":{
"original_bigg_ids":[
"gm2lipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"gm2lipa"
],
"metanetx.chemical":[
"MNXM147384"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4crsol_p",
"name":"P-Cresol",
"compartment":"p",
"formula":"C7H8O",
"notes":{
"original_bigg_ids":[
"_4crsol_p"
]
},
"annotation":{
"bigg.metabolite":[
"4crsol"
],
"biocyc":[
"META:CPD-108"
],
"chebi":[
"CHEBI:1816",
"CHEBI:20352",
"CHEBI:44726",
"CHEBI:17847",
"CHEBI:11981"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b1f893aa-04c5-4a93-b65f-6b42cd0dc97f"
],
"hmdb":[
"HMDB13762",
"HMDB01858"
],
"inchi_key":[
"IWDCLRJOBJJRNH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01468"
],
"metanetx.chemical":[
"MNXM828"
],
"sabiork":[
"25097",
"5602"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01042"
]
}
},
{
"id":"ps181_p",
"name":"Phosphatidylserine (dioctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":-1,
"formula":"C42H77N1O10P1",
"notes":{
"original_bigg_ids":[
"ps181_p"
]
},
"annotation":{
"bigg.metabolite":[
"ps181"
],
"metanetx.chemical":[
"MNXM7662"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gua_p",
"name":"Guanine",
"compartment":"p",
"formula":"C5H5N5O",
"notes":{
"original_bigg_ids":[
"gua_p"
]
},
"annotation":{
"bigg.metabolite":[
"gua"
],
"biocyc":[
"META:GUANINE"
],
"chebi":[
"CHEBI:16235",
"CHEBI:14371",
"CHEBI:42948",
"CHEBI:14372",
"CHEBI:24443",
"CHEBI:5563"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/b5208daa-3750-4745-b4ed-179fb9d4fcfd"
],
"hmdb":[
"HMDB00132"
],
"inchi_key":[
"UYTPUPDQBNUYGX-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00242"
],
"metanetx.chemical":[
"MNXM259"
],
"reactome.compound":[
"83956"
],
"sabiork":[
"59"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00207"
]
}
},
{
"id":"pta_p",
"name":"Pentanoate",
"compartment":"p",
"charge":-1,
"formula":"C5H9O2",
"notes":{
"original_bigg_ids":[
"pta_p"
]
},
"annotation":{
"bigg.metabolite":[
"pta"
],
"biocyc":[
"META:VALERATE"
],
"chebi":[
"CHEBI:25890",
"CHEBI:7980",
"CHEBI:27263",
"CHEBI:27264",
"CHEBI:44803",
"CHEBI:17418",
"CHEBI:31011",
"CHEBI:113448",
"CHEBI:43606",
"CHEBI:14751"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/7e9f4e30-295c-4536-b90c-9bfbacbed726"
],
"hmdb":[
"HMDB00892"
],
"inchi_key":[
"NQPDZGIKBAWPEJ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00803"
],
"lipidmaps":[
"LMFA01010005"
],
"metanetx.chemical":[
"MNXM3382"
],
"sabiork":[
"2161"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00597"
]
}
},
{
"id":"4hba_p",
"name":"4-Hydroxy-benzyl alcohol",
"compartment":"p",
"formula":"C7H8O2",
"notes":{
"original_bigg_ids":[
"_4hba_p"
]
},
"annotation":{
"bigg.metabolite":[
"4hba"
],
"biocyc":[
"META:4-HYDROXY-BENZYL-ALCOHOL"
],
"chebi":[
"CHEBI:67410"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/5fccc743-f94b-40f9-9c78-5f38cf50d217"
],
"hmdb":[
"HMDB11724"
],
"inchi_key":[
"BVJSUAQZOZWCKN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C17467"
],
"metanetx.chemical":[
"MNXM107505"
],
"sabiork":[
"26558"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd17595",
"cpd15378"
]
}
},
{
"id":"h_p",
"name":"H+",
"compartment":"p",
"charge":1,
"formula":"H",
"notes":{
"original_bigg_ids":[
"h_p"
]
},
"annotation":{
"bigg.metabolite":[
"h"
],
"biocyc":[
"META:PROTON"
],
"chebi":[
"CHEBI:5584",
"CHEBI:13357",
"CHEBI:15378",
"CHEBI:10744"
],
"hmdb":[
"HMDB59597"
],
"inchi_key":[
"GPRLSGONYQIRFK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00080"
],
"metanetx.chemical":[
"MNXM1"
],
"reactome.compound":[
"2000349",
"425978",
"74722",
"428040",
"427899",
"428548",
"156540",
"70106",
"425969",
"1132304",
"5668577",
"1470067",
"163953",
"193465",
"113529",
"351626",
"425999",
"194688",
"374900",
"2872447",
"372511"
],
"sabiork":[
"39"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00067"
]
}
},
{
"id":"4hbald_p",
"name":"4-Hydroxybenzaldehyde",
"compartment":"p",
"formula":"C7H6O2",
"notes":{
"original_bigg_ids":[
"_4hbald_p"
]
},
"annotation":{
"bigg.metabolite":[
"4hbald"
],
"biocyc":[
"META:4-HYDROXYBENZALDEHYDE"
],
"chebi":[
"CHEBI:17597",
"CHEBI:1857",
"CHEBI:12002",
"CHEBI:43009",
"CHEBI:20396"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/0c54f7ff-b26d-4b69-83d8-9bcc4283686b",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/5eb02bbc-e4ae-43c6-b80b-cda451d1f2b7"
],
"hmdb":[
"HMDB11718"
],
"inchi_key":[
"RGHHSNMVTDWUBI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00633"
],
"metanetx.chemical":[
"MNXM577"
],
"sabiork":[
"2127"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00484"
]
}
},
{
"id":"pyr_p",
"name":"Pyruvate",
"compartment":"p",
"charge":-1,
"formula":"C3H3O3",
"notes":{
"original_bigg_ids":[
"pyr_p"
]
},
"annotation":{
"bigg.metabolite":[
"pyr"
],
"biocyc":[
"META:PYRUVATE"
],
"chebi":[
"CHEBI:26462",
"CHEBI:26466",
"CHEBI:8685",
"CHEBI:32816",
"CHEBI:45253",
"CHEBI:14987",
"CHEBI:15361"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ccc99777-54dc-42d4-a97e-009b780d3905",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc01020e-8c7e-4087-9f56-cf8c962b7437"
],
"hmdb":[
"HMDB00243"
],
"inchi_key":[
"LCTONWCANYUPML-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00022"
],
"lipidmaps":[
"LMFA01060077"
],
"metanetx.chemical":[
"MNXM23"
],
"reactome.compound":[
"1130930",
"5357717",
"113557",
"29398",
"389680"
],
"sabiork":[
"33"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00020"
]
}
},
{
"id":"h2_p",
"name":"Hydrogen",
"compartment":"p",
"formula":"H2",
"notes":{
"original_bigg_ids":[
"h2_p"
]
},
"annotation":{
"bigg.metabolite":[
"h2"
],
"biocyc":[
"META:HYDROGEN-MOLECULE"
],
"chebi":[
"CHEBI:18276",
"CHEBI:29298",
"CHEBI:29299",
"CHEBI:13350",
"CHEBI:29294",
"CHEBI:25363",
"CHEBI:5785"
],
"hmdb":[
"HMDB01362"
],
"inchi_key":[
"UFHFLCQGNIYNRP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00282"
],
"metanetx.chemical":[
"MNXM195"
],
"reactome.compound":[
"113555"
],
"sabiork":[
"5030"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11640"
]
}
},
{
"id":"so3_p",
"name":"Sulfite",
"compartment":"p",
"charge":-2,
"formula":"O3S",
"notes":{
"original_bigg_ids":[
"so3_p"
]
},
"annotation":{
"bigg.metabolite":[
"so3"
],
"biocyc":[
"META:H2SO3",
"META:HSO3",
"META:SO3"
],
"chebi":[
"CHEBI:15139",
"CHEBI:17137",
"CHEBI:45548",
"CHEBI:48854",
"CHEBI:26837",
"CHEBI:9344",
"CHEBI:5598",
"CHEBI:29214",
"CHEBI:13367",
"CHEBI:17359",
"CHEBI:33543"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/0382072e-fc0c-41a7-be8d-fce140ecf836",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2bf998e0-031f-4353-bbd0-d9c0af36460e"
],
"hmdb":[
"HMDB34829",
"HMDB03008",
"HMDB01033",
"HMDB00240"
],
"inchi_key":[
"LSNNMFCWUKXFEE-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00094",
"C11481"
],
"metanetx.chemical":[
"MNXM105630"
],
"sabiork":[
"3059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00081"
]
}
},
{
"id":"4hbz_p",
"name":"4-Hydroxybenzoate",
"compartment":"p",
"charge":-1,
"formula":"C7H5O3",
"notes":{
"original_bigg_ids":[
"_4hbz_p"
]
},
"annotation":{
"bigg.metabolite":[
"4hbz"
],
"biocyc":[
"META:4-hydroxybenzoate"
],
"chebi":[
"CHEBI:20397",
"CHEBI:30763",
"CHEBI:1858",
"CHEBI:17879",
"CHEBI:44949",
"CHEBI:12003",
"CHEBI:20398"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/1811ddf5-ba98-40a5-949d-c660b8587741",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9e05c7cc-e1b3-46a4-93ce-785c0dc04bfa",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1cc87b2b-41db-4354-90b1-049369c47662"
],
"hmdb":[
"HMDB00500"
],
"inchi_key":[
"FJKROLUGYXJWQN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00156"
],
"metanetx.chemical":[
"MNXM164"
],
"reactome.compound":[
"2162213"
],
"sabiork":[
"1951"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00136"
]
}
},
{
"id":"h2o_p",
"name":"H2O H2O",
"compartment":"p",
"formula":"H2O",
"notes":{
"original_bigg_ids":[
"h2o_p"
]
},
"annotation":{
"bigg.metabolite":[
"h2o"
],
"biocyc":[
"META:CPD-15815",
"META:OXONIUM",
"META:HYDROXYL-GROUP",
"META:WATER",
"META:OH"
],
"chebi":[
"CHEBI:13352",
"CHEBI:30490",
"CHEBI:43228",
"CHEBI:33813",
"CHEBI:44292",
"CHEBI:44641",
"CHEBI:27313",
"CHEBI:42043",
"CHEBI:44819",
"CHEBI:29356",
"CHEBI:5594",
"CHEBI:10743",
"CHEBI:15377",
"CHEBI:42857",
"CHEBI:13365",
"CHEBI:29412",
"CHEBI:16234",
"CHEBI:13419",
"CHEBI:5585",
"CHEBI:44701"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/799908db-b8c9-4982-86cb-1f225e2ad08c",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e7f34a8e-cded-4793-b6d5-792335b38636",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/969d0227-3069-4e44-9525-7ae7bad84170"
],
"hmdb":[
"HMDB02111",
"HMDB01039"
],
"inchi_key":[
"XLYOFNOQVPJJNP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00001",
"C01328"
],
"kegg.drug":[
"D00001",
"D06322"
],
"metanetx.chemical":[
"MNXM2"
],
"reactome.compound":[
"113521",
"141343",
"2022884",
"5278291",
"29356",
"189422",
"5668574",
"5693747",
"109276",
"113519",
"1605715",
"8851517",
"113518",
"351603"
],
"sabiork":[
"40"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27222",
"cpd00001",
"cpd15275"
]
}
},
{
"id":"LalaDgluMdap_p",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate",
"compartment":"p",
"charge":-1,
"formula":"C15H25N4O8",
"notes":{
"original_bigg_ids":[
"LalaDgluMdap_p"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdap"
],
"metanetx.chemical":[
"MNXM90242"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15386"
]
}
},
{
"id":"so4_p",
"name":"Sulfate",
"compartment":"p",
"charge":-2,
"formula":"O4S",
"notes":{
"original_bigg_ids":[
"so4_p"
]
},
"annotation":{
"bigg.metabolite":[
"so4"
],
"biocyc":[
"META:SULFATE",
"META:HSO4"
],
"chebi":[
"CHEBI:15135",
"CHEBI:45693",
"CHEBI:29199",
"CHEBI:9335",
"CHEBI:16189",
"CHEBI:45687",
"CHEBI:26836",
"CHEBI:45696"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/cf4fcd19-f2cb-4d92-aa67-323762e3b269"
],
"hmdb":[
"HMDB01448"
],
"inchi_key":[
"QAOWNCQODCNURD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00059"
],
"kegg.drug":[
"D05963"
],
"metanetx.chemical":[
"MNXM58"
],
"reactome.compound":[
"174375",
"1606845",
"1609649",
"1614584",
"427648"
],
"sabiork":[
"1759"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29301",
"cpd00048"
]
}
},
{
"id":"h2s_p",
"name":"Hydrogen sulfide",
"compartment":"p",
"formula":"H2S",
"notes":{
"original_bigg_ids":[
"h2s_p"
]
},
"annotation":{
"bigg.metabolite":[
"h2s"
],
"biocyc":[
"META:CPD-846",
"META:CPD-7046",
"META:HS"
],
"chebi":[
"CHEBI:14414",
"CHEBI:43058",
"CHEBI:5787",
"CHEBI:13356",
"CHEBI:30488",
"CHEBI:24639",
"CHEBI:29919",
"CHEBI:16136",
"CHEBI:15138",
"CHEBI:45489"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6fca0a43-b0f0-41dd-a454-c7880342d6be",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/83aab241-d065-45ef-a799-98fdad5bcf04",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/0b237b94-a6df-4792-8866-246b2230eef0",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6715c2d9-35cb-48df-aa0b-611368e2fb0a"
],
"hmdb":[
"HMDB00598",
"HMDB03276"
],
"inchi_key":[
"RWSOTUBLDIXVET-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00283"
],
"metanetx.chemical":[
"MNXM89582"
],
"reactome.compound":[
"1663154",
"1614532",
"1655881"
],
"sabiork":[
"2007"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd24697",
"cpd00239"
]
}
},
{
"id":"sulfac_p",
"name":"Sulfoacetate",
"compartment":"p",
"charge":-2,
"formula":"C2H2O5S",
"notes":{
"original_bigg_ids":[
"sulfac_p"
]
},
"annotation":{
"bigg.metabolite":[
"sulfac"
],
"biocyc":[
"META:CPD-10246"
],
"chebi":[
"CHEBI:34987",
"CHEBI:49876",
"CHEBI:58824",
"CHEBI:50519"
],
"inchi_key":[
"AGGIJOLULBJGTQ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C14179"
],
"metanetx.chemical":[
"MNXM1949"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd09878"
]
}
},
{
"id":"LalaDgluMdapDala_p",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine",
"compartment":"p",
"charge":-1,
"formula":"C18H30N5O9",
"notes":{
"original_bigg_ids":[
"LalaDgluMdapDala_p"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdapDala"
],
"inchi_key":[
"BAPAFFOXTCMVCC-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM59271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15387"
]
}
},
{
"id":"hdca_p",
"name":"Hexadecanoate (n-C16:0)",
"compartment":"p",
"charge":-1,
"formula":"C16H31O2",
"notes":{
"original_bigg_ids":[
"hdca_p"
]
},
"annotation":{
"bigg.metabolite":[
"hdca"
],
"biocyc":[
"META:PALMITATE"
],
"chebi":[
"CHEBI:7896",
"CHEBI:24540",
"CHEBI:231736",
"CHEBI:15756",
"CHEBI:44952",
"CHEBI:233028",
"CHEBI:24542",
"CHEBI:14730",
"CHEBI:35978",
"CHEBI:24541",
"CHEBI:24550",
"CHEBI:29889"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc7314a1-8e9a-410f-be4f-f7d8bf32b1cb"
],
"hmdb":[
"HMDB60083",
"HMDB00220"
],
"inchi_key":[
"IPCSVZSSVZVIGE-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00249"
],
"kegg.drug":[
"D05341"
],
"lipidmaps":[
"LMFA01010046",
"LMFA01010001"
],
"metanetx.chemical":[
"MNXM108"
],
"reactome.compound":[
"2453691",
"3632881",
"76168",
"5690516",
"390435",
"426576"
],
"sabiork":[
"1990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00214"
],
"slm":[
"000000510"
]
}
},
{
"id":"Lcyst_p",
"name":"L-Cysteate",
"compartment":"p",
"charge":-1,
"formula":"C3H6NO5S",
"notes":{
"original_bigg_ids":[
"Lcyst_p"
]
},
"annotation":{
"bigg.metabolite":[
"Lcyst"
],
"biocyc":[
"META:L-CYSTEATE"
],
"chebi":[
"CHEBI:58090",
"CHEBI:44590",
"CHEBI:13094",
"CHEBI:6206",
"CHEBI:17285",
"CHEBI:44466",
"CHEBI:44708",
"CHEBI:44513"
],
"inchi_key":[
"XVOYSCVBGLVSOL-REOHCLBHSA-M"
],
"kegg.compound":[
"C00506"
],
"metanetx.chemical":[
"MNXM713"
],
"reactome.compound":[
"5673778",
"379444"
],
"sabiork":[
"2064"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00395"
]
}
},
{
"id":"ac_p",
"name":"Acetate",
"compartment":"p",
"charge":-1,
"formula":"C2H3O2",
"notes":{
"original_bigg_ids":[
"ac_p"
]
},
"annotation":{
"bigg.metabolite":[
"ac"
],
"biocyc":[
"META:ACET"
],
"chebi":[
"CHEBI:13704",
"CHEBI:22165",
"CHEBI:22169",
"CHEBI:40480",
"CHEBI:15366",
"CHEBI:2387",
"CHEBI:30089",
"CHEBI:40486"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/9e26dcbe-4db9-46a0-8614-9f03545032d2",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/5e4989fc-13d3-45d4-ad57-3be380a9d3c0",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a8f0be58-24e8-441b-8d81-a516a0ead4b3",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/d45256fe-61fa-4f5b-bb16-91a3d615e3d8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/3e2d750f-df31-4445-9255-163c627e9b4a"
],
"hmdb":[
"HMDB00042"
],
"inchi_key":[
"QTBSBXVTEAMEQO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00033"
],
"kegg.drug":[
"D00010"
],
"lipidmaps":[
"LMFA01010002"
],
"metanetx.chemical":[
"MNXM26"
],
"reactome.compound":[
"1524044",
"390305",
"113539",
"2022890",
"29416"
],
"sabiork":[
"1278"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00029"
],
"slm":[
"000000449"
]
}
},
{
"id":"taur_p",
"name":"Taurine C2H7NO3S",
"compartment":"p",
"formula":"C2H7NO3S",
"notes":{
"original_bigg_ids":[
"taur_p"
]
},
"annotation":{
"bigg.metabolite":[
"taur"
],
"biocyc":[
"META:TAURINE"
],
"chebi":[
"CHEBI:32970",
"CHEBI:507393",
"CHEBI:9406",
"CHEBI:26852",
"CHEBI:15891",
"CHEBI:15195",
"CHEBI:45877"
],
"hmdb":[
"HMDB00251"
],
"inchi_key":[
"XOAAWQZATWQOTB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00245"
],
"kegg.drug":[
"D00047"
],
"metanetx.chemical":[
"MNXM282"
],
"reactome.compound":[
"193463",
"194069",
"159420"
],
"sabiork":[
"1989"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00210"
]
}
},
{
"id":"hdcea_p",
"name":"Hexadecenoate (n-C16:1)",
"compartment":"p",
"charge":-1,
"formula":"C16H29O2",
"notes":{
"original_bigg_ids":[
"hdcea_p"
]
},
"annotation":{
"bigg.metabolite":[
"hdcea"
],
"metanetx.chemical":[
"MNXM950"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tol_p",
"name":"Toluene",
"compartment":"p",
"formula":"C7H8",
"notes":{
"original_bigg_ids":[
"tol_p"
]
},
"annotation":{
"bigg.metabolite":[
"tol"
],
"biocyc":[
"META:TOLUENE"
],
"chebi":[
"CHEBI:17578",
"CHEBI:15248",
"CHEBI:44023",
"CHEBI:27022",
"CHEBI:9624"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/cf365fd4-4d73-4d8e-a7b3-394c9c524dcf"
],
"hmdb":[
"HMDB34168"
],
"inchi_key":[
"YXFVVABEGXRONW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01455"
],
"metanetx.chemical":[
"MNXM889"
],
"sabiork":[
"5591"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01034"
]
}
},
{
"id":"ala__D_p",
"name":"D-Alanine",
"compartment":"p",
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"ala__D"
],
"biocyc":[
"META:D-ALANINE"
],
"chebi":[
"CHEBI:12899",
"CHEBI:57416",
"CHEBI:41798",
"CHEBI:10840",
"CHEBI:20893",
"CHEBI:4087",
"CHEBI:32435",
"CHEBI:41848",
"CHEBI:41756",
"CHEBI:41877",
"CHEBI:15570",
"CHEBI:32436"
],
"hmdb":[
"HMDB01310"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-UWTATZPHSA-N"
],
"kegg.compound":[
"C00133"
],
"metanetx.chemical":[
"MNXM156"
],
"sabiork":[
"1940"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00117"
]
}
},
{
"id":"hghhlipa_p",
"name":"Heptosyl-glucosyl-heptosyl-heptosyl-kdo2-lipidA",
"compartment":"p",
"charge":-6,
"formula":"C137H242N2O62P2",
"notes":{
"original_bigg_ids":[
"hghhlipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"hghhlipa"
],
"metanetx.chemical":[
"MNXM147479"
],
"sbo":"SBO:0000247"
}
},
{
"id":"alaala_p",
"name":"D-Alanyl-D-alanine",
"compartment":"p",
"formula":"C6H12N2O3",
"notes":{
"original_bigg_ids":[
"alaala_p"
]
},
"annotation":{
"bigg.metabolite":[
"alaala"
],
"biocyc":[
"META:D-ALA-D-ALA"
],
"chebi":[
"CHEBI:13749",
"CHEBI:4088",
"CHEBI:16576",
"CHEBI:57822",
"CHEBI:12900",
"CHEBI:20894"
],
"hmdb":[
"HMDB03459"
],
"inchi_key":[
"DEFJQIDDEAULHB-QWWZWVQMSA-N"
],
"kegg.compound":[
"C00993"
],
"metanetx.chemical":[
"MNXM669"
],
"sabiork":[
"2204"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00731"
]
}
},
{
"id":"tsul_p",
"name":"Thiosulfate",
"compartment":"p",
"charge":-2,
"formula":"O3S2",
"notes":{
"original_bigg_ids":[
"tsul_p"
]
},
"annotation":{
"bigg.metabolite":[
"tsul"
],
"biocyc":[
"META:S2O3"
],
"chebi":[
"CHEBI:33540",
"CHEBI:33539",
"CHEBI:9569",
"CHEBI:26977",
"CHEBI:33541",
"CHEBI:15242",
"CHEBI:16094",
"CHEBI:29279",
"CHEBI:45922",
"CHEBI:5587",
"CHEBI:33542"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/32b1f2ad-32ba-4271-9c86-f4bb1c35e35d"
],
"hmdb":[
"HMDB00257",
"HMDB60293"
],
"inchi_key":[
"DHCDFWKWKRSZHF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05529",
"C00320"
],
"metanetx.chemical":[
"MNXM323"
],
"reactome.compound":[
"1614595"
],
"sabiork":[
"5043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00268"
]
}
},
{
"id":"hghhlipan_p",
"name":"Heptosyl-glucosyl-heptosyl-heptosyl-kdo2-lipidA (glucosediamine)",
"compartment":"p",
"charge":-6,
"formula":"C137H244N4O60P2",
"notes":{
"original_bigg_ids":[
"hghhlipan_p"
]
},
"annotation":{
"bigg.metabolite":[
"hghhlipan"
],
"metanetx.chemical":[
"MNXM147480"
],
"sbo":"SBO:0000247"
}
},
{
"id":"anhgm_p",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid",
"compartment":"p",
"charge":-1,
"formula":"C19H29N2O12",
"notes":{
"original_bigg_ids":[
"anhgm_p"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm"
],
"metanetx.chemical":[
"MNXM3060"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15396"
]
}
},
{
"id":"hxa_p",
"name":"Hexanoate (n-C6:0)",
"compartment":"p",
"charge":-1,
"formula":"C6H11O2",
"notes":{
"original_bigg_ids":[
"hxa_p"
]
},
"annotation":{
"bigg.metabolite":[
"hxa"
],
"biocyc":[
"META:HEXANOATE"
],
"chebi":[
"CHEBI:14398",
"CHEBI:24571",
"CHEBI:40213",
"CHEBI:30776",
"CHEBI:17120",
"CHEBI:5702",
"CHEBI:24569"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e4df503e-0f40-4bad-8885-76774b301631"
],
"hmdb":[
"HMDB00535",
"HMDB61883"
],
"inchi_key":[
"FUZZWVXGSFPDMH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01585"
],
"lipidmaps":[
"LMFA01010006"
],
"metanetx.chemical":[
"MNXM1653"
],
"sabiork":[
"2297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01113"
],
"slm":[
"000001196"
]
}
},
{
"id":"anhgm3p_p",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide",
"compartment":"p",
"charge":-2,
"formula":"C34H52N6O19",
"notes":{
"original_bigg_ids":[
"anhgm3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm3p"
],
"biocyc":[
"META:CPD0-2155"
],
"inchi_key":[
"ZWZMFRJKRXDGBE-UHFFFAOYSA-L"
],
"metanetx.chemical":[
"MNXM63489"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15397"
]
}
},
{
"id":"ttdca_p",
"name":"Tetradecanoate (n-C14:0)",
"compartment":"p",
"charge":-1,
"formula":"C14H27O2",
"notes":{
"original_bigg_ids":[
"ttdca_p"
]
},
"annotation":{
"bigg.metabolite":[
"ttdca"
],
"metanetx.chemical":[
"MNXM162239"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ttdcea_p",
"name":"Tetradecenoate (n-C14:1)",
"compartment":"p",
"charge":-1,
"formula":"C14H25O2",
"notes":{
"original_bigg_ids":[
"ttdcea_p"
]
},
"annotation":{
"bigg.metabolite":[
"ttdcea"
],
"metanetx.chemical":[
"MNXM641"
],
"sbo":"SBO:0000247"
}
},
{
"id":"anhgm4p_p",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide",
"compartment":"p",
"charge":-2,
"formula":"C37H57N7O20",
"notes":{
"original_bigg_ids":[
"anhgm4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm4p"
],
"biocyc":[
"META:CPD0-2292"
],
"inchi_key":[
"ZTOWCORYLXDAAW-JOUWMGDHSA-L"
],
"metanetx.chemical":[
"MNXM63488"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15398"
]
}
},
{
"id":"hxan_p",
"name":"Hypoxanthine",
"compartment":"p",
"formula":"C5H4N4O",
"notes":{
"original_bigg_ids":[
"hxan_p"
]
},
"annotation":{
"bigg.metabolite":[
"hxan"
],
"biocyc":[
"META:HYPOXANTHINE"
],
"chebi":[
"CHEBI:14431",
"CHEBI:43237",
"CHEBI:5841",
"CHEBI:17368",
"CHEBI:24762"
],
"hmdb":[
"HMDB00157"
],
"inchi_key":[
"FDGQSTZJBFJUBT-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00262"
],
"metanetx.chemical":[
"MNXM213"
],
"reactome.compound":[
"113599"
],
"sabiork":[
"5528",
"1321"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00226"
]
}
},
{
"id":"tungs_p",
"name":"Tungstate",
"compartment":"p",
"charge":-2,
"formula":"O4W1",
"notes":{
"original_bigg_ids":[
"tungs_p"
]
},
"annotation":{
"bigg.metabolite":[
"tungs"
],
"biocyc":[
"META:TUNGSTATE"
],
"chebi":[
"CHEBI:36271",
"CHEBI:30518",
"CHEBI:36272",
"CHEBI:46497",
"CHEBI:46502"
],
"inchi_key":[
"PBYZMCDFOULPGH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C20679"
],
"metanetx.chemical":[
"MNXM88308"
],
"sabiork":[
"18862"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15574"
]
}
},
{
"id":"ibt_p",
"name":"Isobutyrate",
"compartment":"p",
"charge":-1,
"formula":"C4H7O2",
"notes":{
"original_bigg_ids":[
"ibt_p"
]
},
"annotation":{
"bigg.metabolite":[
"ibt"
],
"biocyc":[
"META:ISOBUTYRATE"
],
"chebi":[
"CHEBI:19710",
"CHEBI:25337",
"CHEBI:11627",
"CHEBI:43397",
"CHEBI:16135",
"CHEBI:25334",
"CHEBI:1212",
"CHEBI:40653",
"CHEBI:48944"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8a5fed2d-f776-45c8-a5e1-ff36daf7b7fd",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/4cfd018c-fa7a-4005-97eb-88261a98ca92"
],
"hmdb":[
"HMDB03151",
"HMDB01873"
],
"inchi_key":[
"KQNPFQTWMSNSAP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C02632"
],
"lipidmaps":[
"LMFA01020071"
],
"metanetx.chemical":[
"MNXM2531"
],
"sabiork":[
"2473"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01711"
]
}
},
{
"id":"uLa4n_p",
"name":"Undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose",
"compartment":"p",
"formula":"C60H100N1O7P1",
"notes":{
"original_bigg_ids":[
"uLa4n_p"
]
},
"annotation":{
"bigg.metabolite":[
"uLa4n"
],
"metanetx.chemical":[
"MNXM90891"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15576"
]
}
},
{
"id":"ile__L_p",
"name":"L-Isoleucine",
"compartment":"p",
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"ile_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"ile__L"
],
"biocyc":[
"META:ILE"
],
"chebi":[
"CHEBI:43290",
"CHEBI:32604",
"CHEBI:43342",
"CHEBI:32605",
"CHEBI:17191",
"CHEBI:21344",
"CHEBI:13127",
"CHEBI:43366",
"CHEBI:6255",
"CHEBI:32613",
"CHEBI:32612",
"CHEBI:24898",
"CHEBI:58045"
],
"hmdb":[
"HMDB00172"
],
"inchi_key":[
"AGPKZVBTJJNPAG-WHFBIAKZSA-N"
],
"kegg.compound":[
"C00407"
],
"kegg.drug":[
"D00065"
],
"lipidmaps":[
"LMFA01100047"
],
"metanetx.chemical":[
"MNXM231"
],
"reactome.compound":[
"30102",
"113537"
],
"sabiork":[
"70",
"23116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00322"
]
}
},
{
"id":"udcpdp_p",
"name":"Undecaprenyl diphosphate",
"compartment":"p",
"charge":-3,
"formula":"C55H89O7P2",
"notes":{
"original_bigg_ids":[
"udcpdp_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcpdp"
],
"biocyc":[
"META:CPD-9649"
],
"chebi":[
"CHEBI:27192",
"CHEBI:53042",
"CHEBI:17047",
"CHEBI:9863",
"CHEBI:57995",
"CHEBI:15284"
],
"hmdb":[
"HMDB01469"
],
"inchi_key":[
"NTXGVHCCXVHYCL-RDQGWRCRSA-K"
],
"lipidmaps":[
"LMPR03030004"
],
"metanetx.chemical":[
"MNXM5043"
],
"sabiork":[
"1757"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25775"
]
}
},
{
"id":"isetac_p",
"name":"Isethionic acid",
"compartment":"p",
"charge":-1,
"formula":"C2H5O4S",
"notes":{
"original_bigg_ids":[
"isetac_p"
]
},
"annotation":{
"bigg.metabolite":[
"isetac"
],
"biocyc":[
"META:CPD-3745"
],
"chebi":[
"CHEBI:1157",
"CHEBI:61904"
],
"hmdb":[
"HMDB03903"
],
"inchi_key":[
"SUMDYPCJJOFFON-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05123"
],
"metanetx.chemical":[
"MNXM1630"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03048"
]
}
},
{
"id":"udcpp_p",
"name":"Undecaprenyl phosphate",
"compartment":"p",
"charge":-2,
"formula":"C55H89O4P",
"notes":{
"original_bigg_ids":[
"udcpp_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcpp"
],
"biocyc":[
"META:UNDECAPRENYL-P"
],
"chebi":[
"CHEBI:15286",
"CHEBI:57654",
"CHEBI:15285",
"CHEBI:9864",
"CHEBI:16141"
],
"inchi_key":[
"UFPHFKCTOZIAFY-RDQGWRCRSA-L"
],
"kegg.compound":[
"C00348"
],
"lipidmaps":[
"LMPR03020006"
],
"metanetx.chemical":[
"MNXM251"
],
"sabiork":[
"2026"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00286"
]
}
},
{
"id":"k_p",
"name":"Potassium",
"compartment":"p",
"charge":1,
"formula":"K",
"notes":{
"original_bigg_ids":[
"k_p"
]
},
"annotation":{
"bigg.metabolite":[
"k"
],
"biocyc":[
"META:K+"
],
"chebi":[
"CHEBI:26219",
"CHEBI:29103",
"CHEBI:8345",
"CHEBI:49685"
],
"hmdb":[
"HMDB00586"
],
"inchi_key":[
"NPYPAHLBTDXSSS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00238"
],
"kegg.drug":[
"D08403"
],
"metanetx.chemical":[
"MNXM95"
],
"reactome.compound":[
"74126",
"5626313",
"29804"
],
"sabiork":[
"21"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00205"
]
}
},
{
"id":"val__L_p",
"name":"L-Valine",
"compartment":"p",
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"val_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"val__L"
],
"biocyc":[
"META:VAL"
],
"chebi":[
"CHEBI:32859",
"CHEBI:57762",
"CHEBI:13186",
"CHEBI:16414",
"CHEBI:6321",
"CHEBI:21417",
"CHEBI:46418",
"CHEBI:46282",
"CHEBI:32852",
"CHEBI:32851",
"CHEBI:87977",
"CHEBI:32860",
"CHEBI:27266",
"CHEBI:46376",
"CHEBI:46484"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b2ec1d47-f20f-4b19-9b15-ac1a3c2159c5",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/65a4c231-5232-4f08-93e2-007eb0537f0e"
],
"hmdb":[
"HMDB00883",
"HMDB34366"
],
"inchi_key":[
"KZSNJWFQEVHDMF-BYPYZUCNSA-N"
],
"kegg.compound":[
"C16436",
"C00183"
],
"kegg.drug":[
"D00039"
],
"lipidmaps":[
"LMFA01100046"
],
"metanetx.chemical":[
"MNXM199"
],
"reactome.compound":[
"113540",
"29702"
],
"sabiork":[
"68",
"23113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15141",
"cpd00156"
]
}
},
{
"id":"kdo2lipid4_p",
"name":"KDO(2)-lipid IV(A)",
"compartment":"p",
"charge":-6,
"formula":"C84H148N2O37P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4_p"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4"
],
"biocyc":[
"META:KDO2-LIPID-IVA"
],
"chebi":[
"CHEBI:28526",
"CHEBI:60365",
"CHEBI:4477",
"CHEBI:23657"
],
"inchi_key":[
"XAOLJGCZESYRFT-VHSKNIDJSA-H"
],
"kegg.compound":[
"C06025"
],
"kegg.glycan":[
"G11160"
],
"lipidmaps":[
"LMSL02000003"
],
"metanetx.chemical":[
"MNXM824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03586"
]
}
},
{
"id":"leu__L_p",
"name":"L-Leucine",
"compartment":"p",
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"leu_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"leu__L"
],
"biocyc":[
"META:LEU"
],
"chebi":[
"CHEBI:32620",
"CHEBI:25017",
"CHEBI:43695",
"CHEBI:21348",
"CHEBI:13131",
"CHEBI:43733",
"CHEBI:43646",
"CHEBI:43814",
"CHEBI:6260",
"CHEBI:32628",
"CHEBI:32627",
"CHEBI:10866",
"CHEBI:57427",
"CHEBI:32619",
"CHEBI:15603"
],
"hmdb":[
"HMDB00687",
"HMDB62203"
],
"inchi_key":[
"ROHFNLRQFUQHCH-YFKPBYRVSA-N"
],
"kegg.compound":[
"C16439",
"C00123"
],
"kegg.drug":[
"D00030"
],
"lipidmaps":[
"LMFA01100048"
],
"metanetx.chemical":[
"MNXM140"
],
"reactome.compound":[
"29588",
"113580",
"351964"
],
"sabiork":[
"21059",
"69"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00107",
"cpd15143"
]
}
},
{
"id":"zn2_p",
"name":"Zinc",
"compartment":"p",
"charge":2,
"formula":"Zn",
"notes":{
"original_bigg_ids":[
"zn2_p"
]
},
"annotation":{
"bigg.metabolite":[
"zn2"
],
"biocyc":[
"META:ZN+2"
],
"chebi":[
"CHEBI:49982",
"CHEBI:49972",
"CHEBI:29105",
"CHEBI:27368",
"CHEBI:10113"
],
"hmdb":[
"HMDB01303"
],
"inchi_key":[
"PTFCDOFLOPIGGS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00038"
],
"metanetx.chemical":[
"MNXM149"
],
"reactome.compound":[
"216667",
"437093",
"29426",
"216785",
"435350",
"442320",
"158417"
],
"sabiork":[
"1281"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00034"
]
}
},
{
"id":"lipa_p",
"name":"KDO(2)-lipid (A)",
"compartment":"p",
"charge":-6,
"formula":"C110H196N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"lipa"
],
"chebi":[
"CHEBI:27963",
"CHEBI:4476",
"CHEBI:23656",
"CHEBI:58540"
],
"inchi_key":[
"DIXUKJUHGLIZGU-OIPVZEHTSA-H"
],
"kegg.compound":[
"C06026"
],
"lipidmaps":[
"LMSL02000001"
],
"metanetx.chemical":[
"MNXM946"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03587"
]
}
},
{
"id":"lys__L_p",
"name":"L-Lysine",
"compartment":"p",
"charge":1,
"formula":"C6H15N2O2",
"notes":{
"original_bigg_ids":[
"lys_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"lys__L"
],
"biocyc":[
"META:LYS"
],
"chebi":[
"CHEBI:6264",
"CHEBI:32564",
"CHEBI:13135",
"CHEBI:32550",
"CHEBI:21351",
"CHEBI:18019",
"CHEBI:32552",
"CHEBI:32551",
"CHEBI:133538",
"CHEBI:32565",
"CHEBI:43950",
"CHEBI:32563",
"CHEBI:25094"
],
"hmdb":[
"HMDB03405",
"HMDB00182",
"HMDB62809"
],
"inchi_key":[
"KDXKERNSBIXSRK-YFKPBYRVSA-O"
],
"kegg.compound":[
"C00047",
"C16440"
],
"kegg.drug":[
"D02304"
],
"metanetx.chemical":[
"MNXM78"
],
"reactome.compound":[
"29444",
"351979",
"351991"
],
"sabiork":[
"22945",
"79"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19182",
"cpd00039"
]
}
},
{
"id":"meoh_p",
"name":"Methanol",
"compartment":"p",
"formula":"CH4O1",
"notes":{
"original_bigg_ids":[
"meoh_p"
]
},
"annotation":{
"bigg.metabolite":[
"meoh"
],
"biocyc":[
"META:ALCOHOL-GROUP",
"META:METOH"
],
"chebi":[
"CHEBI:52090",
"CHEBI:25227",
"CHEBI:44080",
"CHEBI:17790",
"CHEBI:44553",
"CHEBI:14588",
"CHEBI:6816"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2c247069-759d-4108-ba1b-b1c81678bab7",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b5522308-bb5c-41bb-a11a-e9b9ae61da85"
],
"hmdb":[
"HMDB01875"
],
"inchi_key":[
"OKKJLVBELUTLKV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00132"
],
"kegg.drug":[
"D02309"
],
"metanetx.chemical":[
"MNXM157"
],
"reactome.compound":[
"5693711",
"5359061"
],
"sabiork":[
"55"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00116"
]
}
},
{
"id":"mg2_p",
"name":"Magnesium",
"compartment":"p",
"charge":2,
"formula":"Mg",
"notes":{
"original_bigg_ids":[
"mg2_p"
]
},
"annotation":{
"bigg.metabolite":[
"mg2"
],
"biocyc":[
"META:MG+2"
],
"chebi":[
"CHEBI:6635",
"CHEBI:18420",
"CHEBI:13379",
"CHEBI:39127",
"CHEBI:25112",
"CHEBI:49736"
],
"hmdb":[
"HMDB00547"
],
"inchi_key":[
"JLVVSXFLKOJNIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00305"
],
"metanetx.chemical":[
"MNXM653"
],
"reactome.compound":[
"29926",
"114632",
"5336432",
"109496"
],
"sabiork":[
"1327"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00254"
]
}
},
{
"id":"mn2_p",
"name":"Manganese",
"compartment":"p",
"charge":2,
"formula":"Mn",
"notes":{
"original_bigg_ids":[
"mn2_p"
]
},
"annotation":{
"bigg.metabolite":[
"mn2"
],
"biocyc":[
"META:MN+2"
],
"chebi":[
"CHEBI:21435",
"CHEBI:25156",
"CHEBI:29035",
"CHEBI:49749"
],
"hmdb":[
"HMDB01333"
],
"inchi_key":[
"WAEMQWOKJMHJLA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19610"
],
"metanetx.chemical":[
"MNXM2255"
],
"reactome.compound":[
"29418",
"1981162"
],
"sabiork":[
"1279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20863",
"cpd00030"
]
}
},
{
"id":"mobd_p",
"name":"Molybdate",
"compartment":"p",
"charge":-2,
"formula":"MoO4",
"notes":{
"original_bigg_ids":[
"mobd_p"
]
},
"annotation":{
"bigg.metabolite":[
"mobd"
],
"biocyc":[
"META:CPD-3"
],
"chebi":[
"CHEBI:36263",
"CHEBI:25368",
"CHEBI:36264",
"CHEBI:25371",
"CHEBI:6967"
],
"hmdb":[
"HMDB12260"
],
"inchi_key":[
"MEFBJEMVZONFCJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06232"
],
"metanetx.chemical":[
"MNXM1026"
],
"reactome.compound":[
"947561"
],
"sabiork":[
"8470"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11574"
]
}
},
{
"id":"mso3_p",
"name":"Methanesulfonate",
"compartment":"p",
"charge":-1,
"formula":"CH3O3S",
"notes":{
"original_bigg_ids":[
"mso3_p"
]
},
"annotation":{
"bigg.metabolite":[
"mso3"
],
"biocyc":[
"META:CPD-3746"
],
"chebi":[
"CHEBI:6813",
"CHEBI:27376",
"CHEBI:25224"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/08e4702f-d7fe-43da-9a21-5771459eab73"
],
"inchi_key":[
"AFVFQIVMOAPDHO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C11145"
],
"metanetx.chemical":[
"MNXM1485"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08023"
]
}
},
{
"id":"murein3p3p_p",
"name":"Two linked disacharide tripeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C68H104N12O38",
"notes":{
"original_bigg_ids":[
"murein3p3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein3p3p"
],
"inchi_key":[
"QKZNHGKXDALVQW-UHFFFAOYSA-I"
],
"metanetx.chemical":[
"MNXM88348"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15501"
]
}
},
{
"id":"murein3px3p_p",
"name":"Two disacharide linked murein units, tripeptide crosslinked tripeptide (A2pm->A2pm) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C68H102N12O37",
"notes":{
"original_bigg_ids":[
"murein3px3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein3px3p"
],
"biocyc":[
"META:CPD0-2277"
],
"inchi_key":[
"IYFHCENFVZTZLO-UHFFFAOYSA-G"
],
"metanetx.chemical":[
"MNXM88342"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15502"
]
}
},
{
"id":"murein3px4p_p",
"name":"Two disacharide linked murein units, tripeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C71H107N13O38",
"notes":{
"original_bigg_ids":[
"murein3px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein3px4p"
],
"biocyc":[
"META:CPD0-2273"
],
"inchi_key":[
"LOVDDQLBOGPFKC-UHFFFAOYSA-H"
],
"metanetx.chemical":[
"MNXM88341"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15503"
]
}
},
{
"id":"murein4p3p_p",
"name":"Two linked disacharide tetrapeptide and tripeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C71H109N13O39",
"notes":{
"original_bigg_ids":[
"murein4p3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4p3p"
],
"inchi_key":[
"AKLORNSFZCNZDU-UHFFFAOYSA-H"
],
"metanetx.chemical":[
"MNXM88346"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15504"
]
}
},
{
"id":"murein4p4p_p",
"name":"Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C74H114N14O40",
"notes":{
"original_bigg_ids":[
"murein4p4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4p4p"
],
"biocyc":[
"META:CPD0-2269"
],
"inchi_key":[
"VTZDBMVDVOTCFD-UHFFFAOYSA-G"
],
"metanetx.chemical":[
"MNXM88347"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15505"
]
}
},
{
"id":"murein4px4p_p",
"name":"Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C74H112N14O39",
"notes":{
"original_bigg_ids":[
"murein4px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4px4p"
],
"metanetx.chemical":[
"MNXM5316"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15506"
]
}
},
{
"id":"murein4px4p4p_p",
"name":"Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala), one uncrosslinked tetrapaptide) (middle of chain)",
"compartment":"p",
"charge":-6,
"formula":"C111H169N21O59",
"notes":{
"original_bigg_ids":[
"murein4px4p4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4px4p4p"
],
"biocyc":[
"META:CPD0-2266"
],
"inchi_key":[
"NPJMJVATSCHTAI-UHFFFAOYSA-F"
],
"metanetx.chemical":[
"MNXM87122"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15507"
]
}
},
{
"id":"murein4px4px4p_p",
"name":"Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)",
"compartment":"p",
"charge":-6,
"formula":"C111H167N21O58",
"notes":{
"original_bigg_ids":[
"murein4px4px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4px4px4p"
],
"metanetx.chemical":[
"MNXM6451"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15508"
]
}
},
{
"id":"murein5p3p_p",
"name":"Two linked disacharide pentapeptide and tripeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C74H114N14O40",
"notes":{
"original_bigg_ids":[
"murein5p3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5p3p"
],
"inchi_key":[
"SBOXLYQXPDGZLN-UHFFFAOYSA-G"
],
"metanetx.chemical":[
"MNXM5972"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15509"
]
}
},
{
"id":"murein5p4p_p",
"name":"Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C77H119N15O41",
"notes":{
"original_bigg_ids":[
"murein5p4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5p4p"
],
"inchi_key":[
"YJNGRCZHKAYCMA-VZNOAHCOSA-E"
],
"metanetx.chemical":[
"MNXM5971"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15510"
]
}
},
{
"id":"murein5p5p_p",
"name":"Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C80H124N16O42",
"notes":{
"original_bigg_ids":[
"murein5p5p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5p5p"
],
"biocyc":[
"META:CPD0-2283"
],
"inchi_key":[
"WSONNHVKPYOZEY-UHFFFAOYSA-E"
],
"metanetx.chemical":[
"MNXM88345"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15511"
]
}
},
{
"id":"murein5p5p5p_p",
"name":"Three linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-6,
"formula":"C120H186N24O63",
"notes":{
"original_bigg_ids":[
"murein5p5p5p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5p5p5p"
],
"inchi_key":[
"FOZGDVCGOFWZKF-SSRSPRHQSA-G"
],
"metanetx.chemical":[
"MNXM7807"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15512"
]
}
},
{
"id":"murein5px3p_p",
"name":"Two disacharide linked murein units, pentapeptide corsslinked tripeptide (A2pm->A2pm) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C74H112N14O39",
"notes":{
"original_bigg_ids":[
"murein5px3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5px3p"
],
"metanetx.chemical":[
"MNXM5970"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15513"
]
}
},
{
"id":"murein5px4p_p",
"name":"Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C77H117N15O40",
"notes":{
"original_bigg_ids":[
"murein5px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5px4p"
],
"biocyc":[
"META:CPD0-2278"
],
"inchi_key":[
"NQXCJQVWBSGGNW-UHFFFAOYSA-E"
],
"metanetx.chemical":[
"MNXM88338"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15514"
]
}
},
{
"id":"murein5px4px4p_p",
"name":"Three disacharide linked murein units (pentapeptide crosslinked tetrapeptide (A2pm->D-ala) tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)",
"compartment":"p",
"charge":-6,
"formula":"C114H172N22O59",
"notes":{
"original_bigg_ids":[
"murein5px4px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5px4px4p"
],
"biocyc":[
"META:CPD0-2296"
],
"inchi_key":[
"UVVIMBIDZMDRCG-UHFFFAOYSA-D"
],
"metanetx.chemical":[
"MNXM87121"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15515"
]
}
},
{
"id":"n2_p",
"name":"Nitrogen",
"compartment":"p",
"formula":"N2",
"notes":{
"original_bigg_ids":[
"n2_p"
]
},
"annotation":{
"bigg.metabolite":[
"n2"
],
"biocyc":[
"META:NITROGEN-MOLECULE"
],
"chebi":[
"CHEBI:7593",
"CHEBI:13388",
"CHEBI:30102",
"CHEBI:17997",
"CHEBI:30099",
"CHEBI:25365",
"CHEBI:14660",
"CHEBI:43128"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f4583a7f-9018-45bc-9a9c-545a7e4bc025",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8cc25506-23c5-423a-817d-68fb36ac7b81"
],
"hmdb":[
"HMDB01371"
],
"inchi_key":[
"IJGRMHOSHXDMSA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00697"
],
"kegg.drug":[
"D00083"
],
"metanetx.chemical":[
"MNXM724"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00528"
]
}
},
{
"id":"n2o_p",
"name":"Nitrous oxide",
"compartment":"p",
"formula":"N2O",
"notes":{
"original_bigg_ids":[
"n2o_p"
]
},
"annotation":{
"bigg.metabolite":[
"n2o"
],
"biocyc":[
"META:NITROUS-OXIDE"
],
"chebi":[
"CHEBI:14661",
"CHEBI:25568",
"CHEBI:7598",
"CHEBI:17045",
"CHEBI:44250"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/27f4cd6e-d42f-484e-8813-ef9e60aa5bf0"
],
"hmdb":[
"HMDB35807"
],
"inchi_key":[
"GQPLMRYTRLFLPF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00887"
],
"kegg.drug":[
"D00102"
],
"metanetx.chemical":[
"MNXM579"
],
"sabiork":[
"2179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00659"
]
}
},
{
"id":"na1_p",
"name":"Sodium",
"compartment":"p",
"charge":1,
"formula":"Na",
"notes":{
"original_bigg_ids":[
"na1_p"
]
},
"annotation":{
"bigg.metabolite":[
"na1"
],
"biocyc":[
"META:NA+"
],
"chebi":[
"CHEBI:9175",
"CHEBI:49766",
"CHEBI:26717",
"CHEBI:29101"
],
"hmdb":[
"HMDB00588"
],
"inchi_key":[
"FKNQFGJONOIPTF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01330"
],
"metanetx.chemical":[
"MNXM27"
],
"reactome.compound":[
"2892454",
"83910",
"74113",
"425977",
"425971",
"2872443",
"425958"
],
"sabiork":[
"22"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00971"
]
}
},
{
"id":"nh4_p",
"name":"Ammonium",
"compartment":"p",
"charge":1,
"formula":"H4N",
"notes":{
"original_bigg_ids":[
"nh4_p"
]
},
"annotation":{
"bigg.metabolite":[
"nh4"
],
"biocyc":[
"META:AMMONIUM",
"META:AMMONIA"
],
"chebi":[
"CHEBI:44284",
"CHEBI:135980",
"CHEBI:22533",
"CHEBI:13406",
"CHEBI:29337",
"CHEBI:29340",
"CHEBI:13771",
"CHEBI:16134",
"CHEBI:28938",
"CHEBI:22534",
"CHEBI:13405",
"CHEBI:49783",
"CHEBI:7434",
"CHEBI:7435",
"CHEBI:44269",
"CHEBI:44404",
"CHEBI:13407"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/96667bd9-aeae-4e8f-89d3-100d0396af05",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/41e4c903-407f-49f7-bf6b-0a94d39fa3a7",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/27a89bdf-42f7-478f-91d8-e39881581096"
],
"hmdb":[
"HMDB00051",
"HMDB41827"
],
"inchi_key":[
"QGZKDVFQNNGYKY-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00014",
"C01342"
],
"kegg.drug":[
"D02916",
"D02915"
],
"metanetx.chemical":[
"MNXM15"
],
"reactome.compound":[
"5693978",
"1132163",
"29382",
"76230",
"140912",
"389843",
"2022135",
"31633",
"113561"
],
"sabiork":[
"1268",
"43"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19013",
"cpd00013"
]
}
},
{
"id":"ni2_p",
"name":"Nickel",
"compartment":"p",
"charge":2,
"formula":"Ni",
"notes":{
"original_bigg_ids":[
"ni2_p"
]
},
"annotation":{
"bigg.metabolite":[
"ni2"
],
"biocyc":[
"META:NI+2"
],
"chebi":[
"CHEBI:25517",
"CHEBI:49785",
"CHEBI:49786"
],
"hmdb":[
"HMDB02457"
],
"inchi_key":[
"VEQPNABPJHWNSG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19609"
],
"metanetx.chemical":[
"MNXM3673"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20862"
]
}
},
{
"id":"no_p",
"name":"Nitric oxide",
"compartment":"p",
"formula":"NO",
"notes":{
"original_bigg_ids":[
"no_p"
]
},
"annotation":{
"bigg.metabolite":[
"no"
],
"biocyc":[
"META:NITRIC-OXIDE"
],
"chebi":[
"CHEBI:16480",
"CHEBI:25546",
"CHEBI:14657",
"CHEBI:44452",
"CHEBI:7583"
],
"hmdb":[
"HMDB03378"
],
"inchi_key":[
"MWUXSHHQAYIFBG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00533"
],
"kegg.drug":[
"D00074"
],
"metanetx.chemical":[
"MNXM228"
],
"sbo":"SBO:0000247"
}
},
{
"id":"no2_p",
"name":"Nitrite",
"compartment":"p",
"charge":-1,
"formula":"NO2",
"notes":{
"original_bigg_ids":[
"no2_p"
]
},
"annotation":{
"bigg.metabolite":[
"no2"
],
"biocyc":[
"META:NITRITE"
],
"chebi":[
"CHEBI:16301",
"CHEBI:14658",
"CHEBI:7585",
"CHEBI:44396",
"CHEBI:25567"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/84af9b8c-5f58-4093-85cb-964ba8ed40b7"
],
"hmdb":[
"HMDB02786"
],
"inchi_key":[
"IOVCWXUNBOPUCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00088"
],
"metanetx.chemical":[
"MNXM107"
],
"reactome.compound":[
"1222379"
],
"sabiork":[
"3058"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00075"
]
}
},
{
"id":"no3_p",
"name":"Nitrate",
"compartment":"p",
"charge":-1,
"formula":"NO3",
"notes":{
"original_bigg_ids":[
"no3_p"
]
},
"annotation":{
"bigg.metabolite":[
"no3"
],
"biocyc":[
"META:NITRATE",
"META:CPD-15028"
],
"chebi":[
"CHEBI:44487",
"CHEBI:14654",
"CHEBI:71263",
"CHEBI:7580",
"CHEBI:17632",
"CHEBI:48107",
"CHEBI:25545"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/706be27f-b4cf-4022-b2ef-04cec5197ca5"
],
"hmdb":[
"HMDB02878",
"HMDB01853"
],
"inchi_key":[
"NHNBFGGVMKEFGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00244"
],
"kegg.drug":[
"D02313"
],
"metanetx.chemical":[
"MNXM207"
],
"sabiork":[
"1988"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00209"
]
}
},
{
"id":"ocdca_p",
"name":"Octadecanoate (n-C18:0)",
"compartment":"p",
"charge":-1,
"formula":"C18H35O2",
"notes":{
"original_bigg_ids":[
"ocdca_p"
]
},
"annotation":{
"bigg.metabolite":[
"ocdca"
],
"biocyc":[
"META:STEARIC_ACID"
],
"chebi":[
"CHEBI:25631",
"CHEBI:231588",
"CHEBI:45710",
"CHEBI:25629",
"CHEBI:28842"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c0fae385-4844-4700-ba7a-96b6726ed216"
],
"hmdb":[
"HMDB00827"
],
"inchi_key":[
"QIQXTHQIDYTFRH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01530"
],
"kegg.drug":[
"D00119"
],
"lipidmaps":[
"LMFA01010018",
"LMFA01010047"
],
"metanetx.chemical":[
"MNXM236"
],
"reactome.compound":[
"428198"
],
"sabiork":[
"20032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01080"
],
"slm":[
"000000826"
]
}
},
{
"id":"ocdcea_p",
"name":"Octadecenoate (n-C18:1)",
"compartment":"p",
"charge":-1,
"formula":"C18H33O2",
"notes":{
"original_bigg_ids":[
"ocdcea_p"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcea"
],
"biocyc":[
"META:OLEATE-CPD"
],
"chebi":[
"CHEBI:30823",
"CHEBI:25664",
"CHEBI:16196",
"CHEBI:7741",
"CHEBI:14684",
"CHEBI:104361",
"CHEBI:25663",
"CHEBI:44741"
],
"hmdb":[
"HMDB00207",
"HMDB02066"
],
"inchi_key":[
"ZQPPMHVWECSIRJ-KTKRTIGZSA-M"
],
"kegg.compound":[
"C00712"
],
"kegg.drug":[
"D02315"
],
"lipidmaps":[
"LMFA01030810",
"LMFA01030763",
"LMFA01030002"
],
"metanetx.chemical":[
"MNXM306"
],
"sabiork":[
"2139",
"28897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00536"
],
"slm":[
"000000418"
]
}
},
{
"id":"octa_p",
"name":"Octanoate (n-C8:0)",
"compartment":"p",
"charge":-1,
"formula":"C8H15O2",
"notes":{
"original_bigg_ids":[
"octa_p"
]
},
"annotation":{
"bigg.metabolite":[
"octa"
],
"biocyc":[
"META:CPD-195"
],
"chebi":[
"CHEBI:25648",
"CHEBI:25646",
"CHEBI:28837",
"CHEBI:3373",
"CHEBI:44501"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2202db6c-dc64-4714-9f17-23dbbb8d637f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/7623a8e3-3436-493a-ad6e-13af00ad46d8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/fa5b4ef6-749e-42db-a909-7c6e56587bdd"
],
"hmdb":[
"HMDB62511",
"HMDB00482"
],
"inchi_key":[
"WWZKQHOCKIZLMA-UHFFFAOYSA-M"
],
"kegg.compound":[
"C06423"
],
"kegg.drug":[
"D05220"
],
"lipidmaps":[
"LMFA01010008"
],
"metanetx.chemical":[
"MNXM750"
],
"sabiork":[
"2889"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03846"
],
"slm":[
"000000853"
]
}
},
{
"id":"oxa_p",
"name":"Oxalate",
"compartment":"p",
"charge":-2,
"formula":"C2O4",
"notes":{
"original_bigg_ids":[
"oxa_p"
]
},
"annotation":{
"bigg.metabolite":[
"oxa"
],
"biocyc":[
"META:OXALATE"
],
"chebi":[
"CHEBI:46904",
"CHEBI:14702",
"CHEBI:44583",
"CHEBI:132952",
"CHEBI:30623",
"CHEBI:44820",
"CHEBI:7811",
"CHEBI:25730",
"CHEBI:16995",
"CHEBI:25729"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/33fed278-dbd7-421a-aac0-6c9da2f52882",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09f794f3-250c-406d-9481-e8bd691395c0",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c85291d2-bb9f-4f78-b6d0-c543bc53b2dc",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/96c40666-898b-4e97-bdfe-43dc9d76caed"
],
"hmdb":[
"HMDB02329"
],
"inchi_key":[
"MUBZPKHOEPUJKR-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00209"
],
"metanetx.chemical":[
"MNXM291"
],
"reactome.compound":[
"389819"
],
"sabiork":[
"1975"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00180"
]
}
},
{
"id":"pa120_p",
"name":"1,2-didodecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C27H51O8P1",
"notes":{
"original_bigg_ids":[
"pa120_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa120"
],
"metanetx.chemical":[
"MNXM90509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15521"
]
}
},
{
"id":"pa140_p",
"name":"1,2-ditetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C31H59O8P1",
"notes":{
"original_bigg_ids":[
"pa140_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa140"
],
"biocyc":[
"META:CPD0-1425"
],
"chebi":[
"CHEBI:84266",
"CHEBI:62085",
"CHEBI:83321",
"CHEBI:83550"
],
"inchi_key":[
"OZSITQMWYBNPMW-GDLZYMKVSA-L"
],
"lipidmaps":[
"LMGP10010026"
],
"metanetx.chemical":[
"MNXM51017"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26150",
"cpd15522"
],
"slm":[
"000025497"
]
}
},
{
"id":"pa141_p",
"name":"1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C31H55O8P1",
"notes":{
"original_bigg_ids":[
"pa141_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa141"
],
"metanetx.chemical":[
"MNXM90512"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15523"
]
}
},
{
"id":"pa160_p",
"name":"1,2-dihexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C35H67O8P1",
"notes":{
"original_bigg_ids":[
"pa160_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa160"
],
"biocyc":[
"META:CPD0-1422"
],
"chebi":[
"CHEBI:72859",
"CHEBI:73246"
],
"hmdb":[
"HMDB00674",
"HMDB07857"
],
"inchi_key":[
"PORPENFLTBBHSG-MGBGTMOVSA-L"
],
"lipidmaps":[
"LMGP10010027"
],
"metanetx.chemical":[
"MNXM17312"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26147",
"cpd15524"
],
"slm":[
"000000808"
]
}
},
{
"id":"pa161_p",
"name":"1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C35H63O8P1",
"notes":{
"original_bigg_ids":[
"pa161_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa161"
],
"metanetx.chemical":[
"MNXM90510"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15525"
]
}
},
{
"id":"pa180_p",
"name":"1,2-dioctadecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C39H75O8P1",
"notes":{
"original_bigg_ids":[
"pa180_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa180"
],
"biocyc":[
"META:CPD0-1423"
],
"chebi":[
"CHEBI:82921",
"CHEBI:83774"
],
"inchi_key":[
"YFWHNAWEOZTIPI-DIPNUNPCSA-L"
],
"lipidmaps":[
"LMGP10010028"
],
"metanetx.chemical":[
"MNXM51279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15526",
"cpd26148"
],
"slm":[
"000025492"
]
}
},
{
"id":"pa181_p",
"name":"1,2-dioctadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C39H71O8P1",
"notes":{
"original_bigg_ids":[
"pa181_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa181"
],
"metanetx.chemical":[
"MNXM90511"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15527"
]
}
}
],
"reactions":[
{
"id":"EX_gm1lipb_e",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid B (G. metallireducens, variant 1) exchange",
"metabolites":{
"gm1lipb_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gm1lipb_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gm1lipb_e"
],
"metanetx.reaction":[
"MNXR143001"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_gm2lipa_e",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A (G. metallireducens, variant 2) exchange",
"metabolites":{
"gm2lipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gm2lipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gm2lipa_e"
],
"metanetx.reaction":[
"MNXR143002"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_gua_e",
"name":"Guanine exchange",
"metabolites":{
"gua_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0912579933691785,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gua_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gua_e"
],
"biocyc":[
"META:TRANS-RXN0-578"
],
"metanetx.reaction":[
"MNXR100465"
],
"sabiork":[
"12299"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10142",
"rxn08683",
"rxn08682",
"rxn09746"
]
}
},
{
"id":"EX_h_e",
"name":"H+ exchange",
"metabolites":{
"h_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_h_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_h_e"
],
"biocyc":[
"META:RXN-14452"
],
"metanetx.reaction":[
"MNXR100765"
],
"reactome.reaction":[
"R-HSA-2534378",
"R-DDI-74723",
"R-BTA-170026",
"R-CFA-170026",
"R-SCE-74723",
"R-DRE-74723",
"R-HSA-170026",
"R-TGU-2534378",
"R-HSA-74723",
"R-CFA-2534378",
"R-TGU-74723",
"R-OSA-170026",
"R-RNO-2534378",
"R-GGA-2534378",
"R-MMU-2534378",
"R-BTA-2534378",
"R-SSC-2534378",
"R-DRE-170026",
"R-TGU-170026",
"R-GGA-170026",
"R-SCE-170026",
"R-DRE-2534378",
"R-BTA-74723",
"R-SPO-74723",
"R-XTR-74723",
"R-RNO-74723",
"R-XTR-2534378",
"R-MMU-74723",
"R-CFA-74723",
"R-GGA-74723",
"R-CEL-170026",
"R-MMU-170026",
"R-ATH-74723",
"R-DME-74723",
"R-PFA-74723",
"R-SSC-74723",
"R-XTR-170026",
"R-SSC-170026",
"R-CEL-74723",
"R-ATH-170026",
"R-RNO-170026",
"R-DME-170026"
],
"rhea":[
"34980",
"34981",
"34982",
"34979"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn11009",
"rxn08730"
]
}
},
{
"id":"EX_h2_e",
"name":"H2 exchange",
"metabolites":{
"h2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_h2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_h2_e"
],
"metanetx.reaction":[
"MNXR100495"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10542",
"rxn08691",
"rxn08692"
]
}
},
{
"id":"EX_h2o_e",
"name":"H2O exchange",
"metabolites":{
"h2o_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_h2o_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_h2o_e"
],
"biocyc":[
"META:TRANS-RXN-145",
"META:TRANS-RXN0-547"
],
"metanetx.reaction":[
"MNXR98641"
],
"reactome.reaction":[
"R-ATH-507868",
"R-CFA-432054",
"R-CFA-432010",
"R-RNO-507868",
"R-OSA-432065",
"R-GGA-432010",
"R-SPO-445714",
"R-PFA-445714",
"R-CFA-432065",
"R-GGA-432067",
"R-TGU-432054",
"R-TGU-445714",
"R-OSA-507868",
"R-DRE-507868",
"R-SPO-507868",
"R-BTA-432054",
"R-GGA-507870",
"R-OSA-432010",
"R-DME-432065",
"R-DRE-432067",
"R-PFA-507868",
"R-SSC-432054",
"R-HSA-432065",
"R-OSA-507870",
"R-HSA-432054",
"R-SSC-432065",
"R-CEL-507868",
"R-XTR-507868",
"R-ATH-507870",
"R-SCE-432065",
"R-BTA-507870",
"R-DME-432010",
"R-CFA-445714",
"R-DRE-445714",
"R-BTA-507868",
"R-GGA-507868",
"R-RNO-432054",
"R-RNO-432010",
"R-SSC-432067",
"R-CEL-445714",
"R-DDI-432065",
"R-ATH-432010",
"R-SCE-432054",
"R-MMU-432065",
"R-MMU-445714",
"R-GGA-432065",
"R-HSA-432067",
"R-SSC-507870",
"R-SCE-432067",
"R-RNO-507870",
"R-DME-432054",
"R-ATH-432067",
"R-BTA-445714",
"R-DRE-507870",
"R-DME-507868",
"R-DME-507870",
"R-DRE-432010",
"R-MMU-432010",
"R-HSA-445714",
"R-OSA-432054",
"R-RNO-432067",
"R-TGU-432010",
"R-TGU-507868",
"R-DDI-432054",
"R-PFA-507870",
"R-HSA-507870",
"R-XTR-432067",
"R-HSA-432010",
"R-SSC-507868",
"R-SCE-507870",
"R-CEL-507870",
"R-DDI-507868",
"R-DRE-432054",
"R-XTR-507870",
"R-DDI-432010",
"R-BTA-432065",
"R-CFA-432067",
"R-OSA-432067",
"R-ATH-432065",
"R-GGA-445714",
"R-SCE-507868",
"R-TGU-432065",
"R-MMU-432067",
"R-TGU-507870",
"R-CFA-507870",
"R-RNO-432065",
"R-MMU-432054",
"R-MMU-507868",
"R-SPO-507870",
"R-SCE-432010",
"R-MMU-507870",
"R-SSC-445714",
"R-HSA-507868",
"R-DME-432067",
"R-SSC-432010",
"R-TGU-432067",
"R-GGA-432054",
"R-BTA-432010",
"R-SCE-445714",
"R-DDI-507870",
"R-ATH-432054",
"R-DDI-432067",
"R-XTR-445714",
"R-BTA-432067",
"R-CFA-507868",
"R-RNO-445714"
],
"rhea":[
"29668",
"29669",
"29667",
"29670"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08687",
"rxn08686",
"rxn09745",
"rxn09838",
"rxn09874",
"rxn09812",
"rxn09643",
"rxn05319"
]
}
},
{
"id":"EX_hdca_e",
"name":"Hexadecanoate (n-C16:0) exchange",
"metabolites":{
"hdca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.148911960299163,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hdca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hdca_e"
],
"metanetx.reaction":[
"MNXR99101"
],
"rhea":[
"45257",
"45256",
"45258",
"45259"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08704",
"rxn09848",
"rxn09676"
]
}
},
{
"id":"EX_hdcea_e",
"name":"Hexadecenoate (n-C16:1) exchange",
"metabolites":{
"hdcea_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.144958545423964,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hdcea_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hdcea_e"
],
"metanetx.reaction":[
"MNXR99102"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_hxan_e",
"name":"Hypoxanthine exchange",
"metabolites":{
"hxan_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0780799437851816,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hxan_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hxan_e"
],
"biocyc":[
"META:TRANS-RXN0-579",
"META:TRANS-RXN0-562"
],
"metanetx.reaction":[
"MNXR100749"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10143",
"rxn08737",
"rxn08738"
]
}
},
{
"id":"EX_ibt_e",
"name":"Isobutyrate exchange",
"metabolites":{
"ibt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0263560991679934,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ibt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ibt_e"
],
"metanetx.reaction":[
"MNXR100778"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_ile__L_e",
"name":"L-Isoleucine exchange",
"metabolites":{
"ile__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.046782076023188,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ile_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ile__L_e"
],
"metanetx.reaction":[
"MNXR100824"
],
"sabiork":[
"13467"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08747",
"rxn13323",
"rxn10933"
]
}
},
{
"id":"EX_isetac_e",
"name":"Isethionic acid exchange",
"metabolites":{
"isetac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_isetac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_isetac_e"
],
"metanetx.reaction":[
"MNXR100881"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08759"
]
}
},
{
"id":"EX_k_e",
"name":"K+ exchange",
"metabolites":{
"k_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_k_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_k_e"
],
"biocyc":[
"META:TRANS-RXN-190",
"META:TRANS-RXN-186",
"META:TRANS-RXN-185",
"META:TRANS-RXN-143",
"META:TRANS-RXN-187"
],
"metanetx.reaction":[
"MNXR100950"
],
"reactome.reaction":[
"R-CEL-1296046",
"R-CFA-1299297",
"R-DRE-1296127",
"R-CEL-1296035",
"R-GGA-1299318",
"R-XTR-1296046",
"R-RNO-5678261",
"R-ATH-1296043",
"R-MMU-877187",
"R-SSC-1296037",
"R-BTA-1299359",
"R-TGU-1296024",
"R-TGU-1296127",
"R-TGU-5678261",
"R-RNO-1296348",
"R-DME-5577234",
"R-RNO-1299297",
"R-HSA-5577050",
"R-DRE-1296037",
"R-DRE-1296024",
"R-XTR-5577050",
"R-MMU-1296348",
"R-RNO-5578910",
"R-DRE-5578910",
"R-RNO-1296024",
"R-CFA-1369017",
"R-TGU-1296348",
"R-RNO-2534365",
"R-GGA-1296045",
"R-CFA-5678261",
"R-XTR-1369017",
"R-DRE-1296043",
"R-GGA-1013020",
"R-HSA-5577234",
"R-CEL-1299338",
"R-CFA-1296043",
"R-BTA-1296127",
"R-HSA-5578910",
"R-BTA-1299338",
"R-BTA-1299318",
"R-RNO-5577237",
"R-HSA-1299359",
"R-CEL-1299318",
"R-HSA-1299318",
"R-DRE-1299304",
"R-MMU-1013020",
"R-XTR-1296039",
"R-TGU-1296045",
"R-BTA-1296045",
"R-XTR-1296037",
"R-SSC-5678261",
"R-MMU-1299297",
"R-DME-1296348",
"R-HSA-5683209",
"R-BTA-5578910",
"R-CFA-1296046",
"R-DME-1296035",
"R-CFA-1299359",
"R-HSA-1296043",
"R-DRE-1296039",
"R-GGA-1296348",
"R-XTR-1296043",
"R-SSC-2534365",
"R-XTR-5678261",
"R-CEL-1013020",
"R-GGA-1296127",
"R-MMU-1296039",
"R-HSA-1299304",
"R-BTA-1299304",
"R-DME-1296043",
"R-BTA-1296024",
"R-RNO-1296037",
"R-CFA-1296024",
"R-CFA-1013020",
"R-HSA-1296046",
"R-CFA-1296037",
"R-CEL-1299297",
"R-BTA-5577237",
"R-DME-1296039",
"R-TGU-1299359",
"R-CFA-1296127",
"R-HSA-1369017",
"R-RNO-1296046",
"R-XTR-1299338",
"R-DRE-5678261",
"R-XTR-5577234",
"R-HSA-1296024",
"R-RNO-1296045",
"R-GGA-5578910",
"R-DRE-1299338",
"R-GGA-1296046",
"R-RNO-1369017",
"R-CEL-1296045",
"R-DRE-5577050",
"R-DRE-1013020",
"R-BTA-1299297",
"R-SSC-1299338",
"R-SSC-1369017",
"R-GGA-5577050",
"R-CEL-1299359",
"R-BTA-5678261",
"R-BTA-1296043",
"R-RNO-1296127",
"R-OSA-1296043",
"R-CFA-5577050",
"R-CFA-5577234",
"R-SSC-1296045",
"R-MMU-1299304",
"R-MMU-1369017",
"R-SSC-1299304",
"R-MMU-1296035",
"R-HSA-1296035",
"R-TGU-1296037",
"R-GGA-1296039",
"R-SSC-5578910",
"R-GGA-1296024",
"R-CFA-1299304",
"R-GGA-5577234",
"R-RNO-1299338",
"R-DME-1296127",
"R-HSA-877187",
"R-DRE-1369017",
"R-HSA-1296348",
"R-BTA-1296348",
"R-MMU-1296043",
"R-RNO-1013020",
"R-MMU-1296127",
"R-RNO-5577050",
"R-CFA-1296045",
"R-BTA-1296039",
"R-RNO-5577234",
"R-TGU-1299338",
"R-RNO-1296039",
"R-TGU-1296039",
"R-XTR-1296127",
"R-SSC-1296039",
"R-DME-1296046",
"R-MMU-1299359",
"R-CEL-1296348",
"R-BTA-1296046",
"R-RNO-1299318",
"R-MMU-1299338",
"R-DRE-877187",
"R-MMU-5577050",
"R-BTA-1296037",
"R-RNO-1299359",
"R-GGA-1296043",
"R-DME-1013020",
"R-HSA-1299338",
"R-XTR-1296348",
"R-XTR-1299318",
"R-GGA-1299338",
"R-DRE-5577234",
"R-SSC-1296046",
"R-XTR-5578910",
"R-CFA-1296035",
"R-CFA-1296348",
"R-CFA-5577237",
"R-SSC-1296024",
"R-CEL-5577234",
"R-CFA-5578910",
"R-DRE-1296035",
"R-SSC-1296043",
"R-CFA-1299338",
"R-GGA-877187",
"R-HSA-5678261",
"R-CFA-2534365",
"R-HSA-1296127",
"R-HSA-1013020",
"R-BTA-5577234",
"R-DRE-1296348",
"R-MMU-1296024",
"R-BTA-1296035",
"R-DME-1299318",
"R-MMU-1296037",
"R-DRE-1296045",
"R-DRE-5577237",
"R-TGU-5577234",
"R-SSC-1299359",
"R-MMU-5578910",
"R-SSC-1013020",
"R-MMU-1296045",
"R-HSA-1296045",
"R-XTR-1296045",
"R-TGU-1299304",
"R-RNO-877187",
"R-MMU-2534365",
"R-CFA-877187",
"R-DRE-1296046",
"R-DRE-1299359",
"R-TGU-1296046",
"R-DME-1299338",
"R-TGU-5578910",
"R-RNO-1296035",
"R-SSC-1296348",
"R-XTR-1299359",
"R-MMU-5678261",
"R-SSC-1296127",
"R-BTA-1013020",
"R-CEL-5578910",
"R-GGA-1296037",
"R-GGA-5577237",
"R-XTR-1299304",
"R-GGA-5678261",
"R-SSC-1299297",
"R-MMU-1296046",
"R-TGU-5577050",
"R-DME-5578910",
"R-BTA-5577050",
"R-RNO-1299304",
"R-TGU-1013020",
"R-GGA-1299359",
"R-XTR-1013020",
"R-MMU-5577234",
"R-MMU-5577237",
"R-TGU-1369017",
"R-RNO-1296043",
"R-TGU-1296043",
"R-XTR-1296035",
"R-HSA-1296037",
"R-SSC-1296035",
"R-SSC-877187",
"R-CFA-1299318",
"R-DME-1296045",
"R-GGA-1296035",
"R-HSA-1299297",
"R-CFA-1296039",
"R-BTA-2534365",
"R-DME-1299359",
"R-BTA-877187",
"R-HSA-2534365",
"R-GGA-1369017",
"R-XTR-5577237",
"R-HSA-5577237",
"R-SSC-5577234",
"R-HSA-1296039",
"R-CEL-1296039",
"R-XTR-877187",
"R-SSC-5577237",
"R-DRE-1299318",
"R-GGA-1299304",
"R-BTA-1369017",
"R-MMU-1299318"
],
"rhea":[
"29463",
"29464",
"29466",
"29465"
],
"sabiork":[
"7044"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05206",
"rxn08771"
]
}
},
{
"id":"EX_gm1lipa_e",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A (G. metallireducens, variant 1) exchange",
"metabolites":{
"gm1lipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-1.72928955665997,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gm1lipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gm1lipa_e"
],
"metanetx.reaction":[
"MNXR143000"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_kdo2lipid4_e",
"name":"KDO(2)-lipid IV(A) exchange",
"metabolites":{
"kdo2lipid4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_kdo2lipid4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_kdo2lipid4_e"
],
"metanetx.reaction":[
"MNXR100901"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08761"
]
}
},
{
"id":"DM_5drib_c",
"name":"Sink needed to allow 5'-deoxyribose to leave system",
"metabolites":{
"5drib_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Intracellular demand",
"notes":{
"original_bigg_ids":[
"DM_5DRIB"
]
},
"annotation":{
"bigg.reaction":[
"DM_5drib_c"
],
"metanetx.reaction":[
"MNXR142736"
],
"sbo":"SBO:0000628"
}
},
{
"id":"DM_amob_c",
"name":"Sink needed to allow S-Adenosyl-4-methylthio-2-oxobutanoate to leave system",
"metabolites":{
"amob_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Intracellular demand",
"notes":{
"original_bigg_ids":[
"DM_AMOB"
]
},
"annotation":{
"bigg.reaction":[
"DM_amob_c"
],
"metanetx.reaction":[
"MNXR142748"
],
"sbo":"SBO:0000628"
}
},
{
"id":"EX_kdo2lipid4b_e",
"name":"KDO(2)-lipid IV(B) exchange",
"metabolites":{
"kdo2lipid4b_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_kdo2lipid4b_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_kdo2lipid4b_e"
],
"metanetx.reaction":[
"MNXR143012"
],
"sbo":"SBO:0000627"
}
},
{
"id":"3HAD100",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0)",
"metabolites":{
"3hdecACP_c":-1.0,
"h2o_c":1.0,
"tdec2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD100"
]
},
"annotation":{
"bigg.reaction":[
"3HAD100"
],
"ec-code":[
"2.3.1.85",
"4.2.1.58",
"4.2.1.60",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04535"
],
"metanetx.reaction":[
"MNXR94876"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05333"
]
}
},
{
"id":"3HAD120",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:0)",
"metabolites":{
"3hddecACP_c":-1.0,
"h2o_c":1.0,
"tddec2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD120"
]
},
"annotation":{
"bigg.reaction":[
"3HAD120"
],
"ec-code":[
"2.3.1.85",
"4.2.1.58",
"4.2.1.60",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04965"
],
"metanetx.reaction":[
"MNXR94877"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05331"
]
}
},
{
"id":"EX_leu__L_e",
"name":"L-Leucine exchange",
"metabolites":{
"leu__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0467820760231882,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_leu_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_leu__L_e"
],
"biocyc":[
"META:RXN66-447"
],
"metanetx.reaction":[
"MNXR101057"
],
"sabiork":[
"13056"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08786",
"rxn11003"
]
}
},
{
"id":"3HAD121",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:1)",
"metabolites":{
"3hcddec5eACP_c":-1.0,
"h2o_c":1.0,
"t3c5ddeceACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD121"
]
},
"annotation":{
"bigg.reaction":[
"3HAD121"
],
"ec-code":[
"4.2.1.61"
],
"metanetx.reaction":[
"MNXR94878"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07976"
]
}
},
{
"id":"EX_lipa_e",
"name":"KDO(2)-lipid (A) exchange",
"metabolites":{
"lipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lipa_e"
],
"metanetx.reaction":[
"MNXR101084"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08791"
]
}
},
{
"id":"3HAD140",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:0)",
"metabolites":{
"3hmrsACP_c":-1.0,
"h2o_c":1.0,
"tmrs2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD140"
]
},
"annotation":{
"bigg.reaction":[
"3HAD140"
],
"biocyc":[
"META:RXN-9537"
],
"ec-code":[
"2.3.1.85",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04568"
],
"metanetx.reaction":[
"MNXR94879"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05335"
]
}
},
{
"id":"BIOMASS_Gm_GS15_WT_79p20M",
"name":"Geobacter metallireducens biomass objective function (iAF987) - WT - with 79.20 GAM estimate",
"metabolites":{
"10fthf_c":-0.000223,
"2dmmql8_c":-0.000223,
"2fe2s_c":-2.5e-05,
"4fe4s_c":-0.000248,
"5mthf_c":-0.000223,
"accoa_c":-0.000279,
"adocbl_c":-0.000223,
"adp_c":79.2,
"ala__L_c":-0.49649,
"amet_c":-0.000223,
"arg__L_c":-0.28589,
"asn__L_c":-0.23298,
"asp__L_c":-0.23298,
"atp_c":-79.298747,
"bmocogdp_c":-0.000116,
"btn_c":-2e-06,
"ca2_c":-0.004954,
"chor_c":-0.000223,
"cl_c":-0.004954,
"clpn140_p":-0.00122,
"clpn160_p":-0.003683,
"clpn161_p":-0.005393,
"clpn181_p":-0.000215,
"coa_c":-0.000168,
"cobalt2_c":-2.4e-05,
"ctp_c":-0.075407,
"cu2_c":-0.000675,
"cys__L_c":-0.088513,
"datp_c":-0.032312,
"dctp_c":-0.047392,
"dgtp_c":-0.047392,
"dttp_c":-0.032312,
"fad_c":-0.000223,
"fe2_c":-0.013822,
"gln__L_c":-0.254349,
"glu__L_c":-0.254349,
"gly_c":-0.592125,
"glycogen_c":-0.185024,
"gm1lipa_e":-0.013207,
"gtp_c":-0.121489,
"h2o_c":-74.030609,
"h_c":79.2,
"hemeO_c":-0.000223,
"his__L_c":-0.091566,
"ile__L_c":-0.2808,
"k_c":-0.18579,
"leu__L_c":-0.43545,
"lys__L_c":-0.33167,
"malcoa_c":-3.1e-05,
"met__L_c":-0.14854,
"mg2_c":-0.008257,
"mlthf_c":-0.000223,
"mn2_c":-0.000658,
"mobd_c":-7e-06,
"mocogdp_c":-7e-06,
"mql8_c":-0.000223,
"murein3p3p_p":-0.001614,
"murein3px4p_p":-0.000726,
"murein4p4p_p":-0.006457,
"murein4px4p_p":-0.006538,
"murein4px4px4p_p":-0.000807,
"nad_c":-0.001787,
"nadh_c":-4.5e-05,
"nadp_c":-0.000112,
"nadph_c":-0.000335,
"nh4_c":-0.012386,
"ni2_c":-0.000307,
"pe140_c":-0.005125,
"pe140_p":-0.013178,
"pe160_c":-0.015467,
"pe160_p":-0.039773,
"pe161_c":-0.022649,
"pe161_p":-0.058241,
"pe181_c":-0.002327,
"pe181_p":-0.000905,
"pg140_c":-0.002372,
"pg140_p":-0.002021,
"pg160_c":-0.007159,
"pg160_p":-0.006098,
"pg161_c":-0.010483,
"pg161_p":-0.00893,
"pg181_c":-0.000357,
"pg181_p":-0.000419,
"phe__L_c":-0.179062,
"pheme_c":-0.000223,
"pi_c":79.195871,
"ppi_c":0.536443,
"pro__L_c":-0.213653,
"ptrc_c":-0.030683,
"pydx5p_c":-0.000223,
"ribflv_c":-0.000223,
"ser__L_c":-0.208566,
"sheme_c":-0.000223,
"so4_c":-0.004129,
"spmd_c":-0.00607,
"succoa_c":-9.8e-05,
"thf_c":-0.000223,
"thmpp_c":-0.000223,
"thr__L_c":-0.245193,
"trp__L_c":-0.054939,
"tyr__L_c":-0.13328,
"udcpdp_c":-5.5e-05,
"utp_c":-0.081392,
"val__L_c":-0.408993,
"zn2_c":-0.000325
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Biomass and maintenance functions",
"notes":{
"original_bigg_ids":[
"Gm_biomass_GS15_WT_79p20M"
]
},
"annotation":{
"bigg.reaction":[
"BIOMASS_Gm_GS15_WT_79p20M"
],
"metanetx.reaction":[
"MNXR142683"
],
"sbo":"SBO:0000629"
}
},
{
"id":"BIOMASS_Gm_GS15_core_79p20M",
"name":"Geobacter metallireducens biomass objective function (iAF987) - core - with 79.20 GAM estimate",
"metabolites":{
"10fthf_c":-0.000223,
"2fe2s_c":-2.5e-05,
"4fe4s_c":-0.00025,
"adp_c":79.2,
"ala__L_c":-0.5142,
"amet_c":-0.000223,
"arg__L_c":-0.2961,
"asn__L_c":-0.2413,
"asp__L_c":-0.2413,
"atp_c":-79.302794,
"btn_c":-2e-06,
"ca2_c":-0.005048,
"cl_c":-0.005048,
"coa_c":-0.000168,
"cobalt2_c":-2.4e-05,
"ctp_c":-0.0785,
"cu2_c":-0.000687,
"cys__L_c":-0.09168,
"datp_c":-0.03363,
"dctp_c":-0.04933,
"dgtp_c":-0.04933,
"dttp_c":-0.03363,
"fad_c":-0.000223,
"fe2_c":-0.014083,
"gln__L_c":-0.2634,
"glu__L_c":-0.2634,
"gly_c":-0.6133,
"gtp_c":-0.1265,
"h2o_c":-73.84599,
"h_c":79.2,
"his__L_c":-0.09484,
"ile__L_c":-0.2908,
"k_c":-0.1893,
"kdo2lipid4_e":-0.02337,
"leu__L_c":-0.451,
"lys__L_c":-0.3435,
"met__L_c":-0.1538,
"mg2_c":-0.008413,
"mlthf_c":-0.000223,
"mn2_c":-0.00067,
"mobd_c":-7e-06,
"mocogdp_c":-7e-06,
"mql8_c":-0.000223,
"murein5px4p_p":-0.01638,
"nad_c":-0.001787,
"nadp_c":-0.000112,
"nh4_c":-0.01262,
"ni2_c":-0.000313,
"pe160_c":-0.03673,
"pe160_p":-0.06821,
"pe161_c":-0.04192,
"pe161_p":-0.07785,
"phe__L_c":-0.1855,
"pheme_c":-0.000223,
"pi_c":79.19579,
"ppi_c":0.5584,
"pro__L_c":-0.2213,
"pydx5p_c":-0.000223,
"ribflv_c":-0.000223,
"ser__L_c":-0.216,
"sheme_c":-0.000223,
"so4_c":-0.004206,
"thf_c":-0.000223,
"thmpp_c":-0.000223,
"thr__L_c":-0.2539,
"trp__L_c":-0.0569,
"tyr__L_c":-0.138,
"udcpdp_c":-5.5e-05,
"utp_c":-0.08473,
"val__L_c":-0.4236,
"zn2_c":-0.000331
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.977319694724969,
"subsystem":"Biomass and maintenance functions",
"notes":{
"original_bigg_ids":[
"Gm_biomass_GS15_core_79p20M"
]
},
"annotation":{
"bigg.reaction":[
"BIOMASS_Gm_GS15_core_79p20M"
],
"metanetx.reaction":[
"MNXR142684"
],
"sbo":"SBO:0000629"
}
},
{
"id":"3HAD141",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:1)",
"metabolites":{
"3hcmrs7eACP_c":-1.0,
"h2o_c":1.0,
"t3c7mrseACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD141"
]
},
"annotation":{
"bigg.reaction":[
"3HAD141"
],
"ec-code":[
"4.2.1.61"
],
"metanetx.reaction":[
"MNXR94880"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07977"
]
}
},
{
"id":"3HAD160",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:0)",
"metabolites":{
"3hpalmACP_c":-1.0,
"h2o_c":1.0,
"tpalm2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD160"
]
},
"annotation":{
"bigg.reaction":[
"3HAD160"
],
"ec-code":[
"2.3.1.85",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04544"
],
"metanetx.reaction":[
"MNXR94881"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05332"
]
}
},
{
"id":"EX_2obut_e",
"name":"2-Oxobutanoate exchange",
"metabolites":{
"2obut_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_2obut_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_2obut_e"
],
"biocyc":[
"META:TRANS-RXN0-558"
],
"metanetx.reaction":[
"MNXR94814"
],
"sabiork":[
"12475"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13195"
]
}
},
{
"id":"EX_lipb_e",
"name":"KDO(2)-lipid (B) exchange",
"metabolites":{
"lipb_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lipb_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lipb_e"
],
"metanetx.reaction":[
"MNXR143019"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_3httdca_e",
"name":"3-hydroxy tetradecanoate (n-C14:0) exchange",
"metabolites":{
"3httdca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3httdca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3httdca_e"
],
"metanetx.reaction":[
"MNXR142844"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_3mb_e",
"name":"3-Methylbutanoic acid exchange",
"metabolites":{
"3mb_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0349218313975912,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3mb_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3mb_e"
],
"metanetx.reaction":[
"MNXR94918"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_4crsol_e",
"name":"P-Cresol exchange",
"metabolites":{
"4crsol_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0270150016471934,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4crsol_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4crsol_e"
],
"biocyc":[
"META:TRANS-RXN0-500"
],
"metanetx.reaction":[
"MNXR96888"
],
"rhea":[
"35071",
"35072",
"35074",
"35073"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_4hba_e",
"name":"4-Hydroxy-benzyl alcohol exchange",
"metabolites":{
"4hba_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0270150016471934,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4hba_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4hba_e"
],
"biocyc":[
"META:TRANS-RXN0-274"
],
"metanetx.reaction":[
"MNXR95007"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12376"
]
}
},
{
"id":"EX_4hbald_e",
"name":"4-Hydroxybenzaldehyde exchange",
"metabolites":{
"4hbald_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0289917090847929,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4hbald_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4hbald_e"
],
"metanetx.reaction":[
"MNXR95006"
],
"sbo":"SBO:0000627"
}
},
{
"id":"3HAD161",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:1)",
"metabolites":{
"3hcpalm9eACP_c":-1.0,
"h2o_c":1.0,
"t3c9palmeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD161"
]
},
"annotation":{
"bigg.reaction":[
"3HAD161"
],
"ec-code":[
"4.2.1.61"
],
"metanetx.reaction":[
"MNXR94882"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07978"
]
}
},
{
"id":"3HAD180",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:0)",
"metabolites":{
"3hoctaACP_c":-1.0,
"h2o_c":1.0,
"toctd2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD180"
]
},
"annotation":{
"bigg.reaction":[
"3HAD180"
],
"ec-code":[
"4.2.1.61",
"4.2.1.-",
"2.3.1.-"
],
"kegg.reaction":[
"R07764"
],
"metanetx.reaction":[
"MNXR94883"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07979"
]
}
},
{
"id":"3HAD181",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:1)",
"metabolites":{
"3hcvac11eACP_c":-1.0,
"h2o_c":1.0,
"t3c11vaceACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD181"
]
},
"annotation":{
"bigg.reaction":[
"3HAD181"
],
"ec-code":[
"4.2.1.61"
],
"metanetx.reaction":[
"MNXR94884"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07980"
]
}
},
{
"id":"3HAD40",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C4:0)",
"metabolites":{
"3haACP_c":-1.0,
"but2eACP_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD40"
]
},
"annotation":{
"bigg.reaction":[
"3HAD40"
],
"ec-code":[
"4.2.1.58"
],
"metanetx.reaction":[
"MNXR94885"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07981"
]
}
},
{
"id":"3HAD60",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C6:0)",
"metabolites":{
"3hhexACP_c":-1.0,
"h2o_c":1.0,
"thex2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD60"
]
},
"annotation":{
"bigg.reaction":[
"3HAD60"
],
"ec-code":[
"2.3.1.85",
"4.2.1.58",
"2.3.1.86",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04954"
],
"metanetx.reaction":[
"MNXR94887"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05330"
]
}
},
{
"id":"3HAD80",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)",
"metabolites":{
"3hoctACP_c":-1.0,
"h2o_c":1.0,
"toct2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3HAD80"
]
},
"annotation":{
"bigg.reaction":[
"3HAD80"
],
"biocyc":[
"META:4.2.1.59-RXN"
],
"ec-code":[
"2.3.1.85",
"4.2.1.58",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04537"
],
"metanetx.reaction":[
"MNXR94888"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05334"
]
}
},
{
"id":"3HOPCD",
"name":"3-hydroxypimeloyl-CoA dehydrogenase",
"metabolites":{
"3hpimcoa_c":-1.0,
"3opimcoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2269 or Gmet_2072",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"_3HOPCD"
]
},
"annotation":{
"bigg.reaction":[
"3HOPCD"
],
"biocyc":[
"META:1.1.1.259-RXN"
],
"ec-code":[
"1.1.1.259",
"1.1.1.35"
],
"kegg.reaction":[
"R05305"
],
"metanetx.reaction":[
"MNXR94897"
],
"rhea":[
"11171",
"11168",
"11169",
"11170"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03617"
]
}
},
{
"id":"3MBt2pp",
"name":"H+/Isovalerate symport (periplasm)",
"metabolites":{
"3mb_c":1.0,
"3mb_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"_3MBt2pp"
]
},
"annotation":{
"bigg.reaction":[
"3MBt2pp"
],
"metanetx.reaction":[
"MNXR94916"
],
"sbo":"SBO:0000185"
}
},
{
"id":"3MBt4pp",
"name":"Na+/Isovalerate symport (periplasm)",
"metabolites":{
"3mb_c":1.0,
"3mb_p":-1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"objective_coefficient":-0.00197670743759952,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"_3MBt4pp"
]
},
"annotation":{
"bigg.reaction":[
"3MBt4pp"
],
"metanetx.reaction":[
"MNXR94917"
],
"sbo":"SBO:0000185"
}
},
{
"id":"3MBtex",
"name":"3-methylbutanoic acid transport via diffusion (extracellular to periplasm)",
"metabolites":{
"3mb_e":-1.0,
"3mb_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"_3MBtex"
]
},
"annotation":{
"bigg.reaction":[
"3MBtex"
],
"metanetx.reaction":[
"MNXR94918"
],
"sbo":"SBO:0000185"
}
},
{
"id":"3MMD",
"name":"3-methylmalate dehydrogenase",
"metabolites":{
"2m3osuc_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"r3mmal_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0602",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"_3MMD"
]
},
"annotation":{
"bigg.reaction":[
"3MMD"
],
"ec-code":[
"1.1.1"
],
"metanetx.reaction":[
"MNXR94921"
],
"rhea":[
"25765",
"25764",
"25766",
"25763"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAR100",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0)",
"metabolites":{
"3hdecACP_c":1.0,
"3odecACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR100"
]
},
"annotation":{
"bigg.reaction":[
"3OAR100"
],
"biocyc":[
"META:RXN-9528"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04534"
],
"metanetx.reaction":[
"MNXR94941"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05338"
]
}
},
{
"id":"3OAR120",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0)",
"metabolites":{
"3hddecACP_c":1.0,
"3oddecACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR120"
]
},
"annotation":{
"bigg.reaction":[
"3OAR120"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04964"
],
"metanetx.reaction":[
"MNXR94942"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05340"
]
}
},
{
"id":"3OAR121",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1)",
"metabolites":{
"3hcddec5eACP_c":1.0,
"3ocddec5eACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR121"
]
},
"annotation":{
"bigg.reaction":[
"3OAR121"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94943"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07987"
]
}
},
{
"id":"3OAR140",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0)",
"metabolites":{
"3hmrsACP_c":1.0,
"3omrsACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR140"
]
},
"annotation":{
"bigg.reaction":[
"3OAR140"
],
"biocyc":[
"META:RXN-9536"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04566"
],
"metanetx.reaction":[
"MNXR94944"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05342"
]
}
},
{
"id":"EX_lys__L_e",
"name":"L-Lysine exchange",
"metabolites":{
"lys__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lys_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lys__L_e"
],
"biocyc":[
"META:TRANS-RXN0-569"
],
"metanetx.reaction":[
"MNXR101269"
],
"sabiork":[
"7984"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10834",
"rxn08856"
]
}
},
{
"id":"3OAR141",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1)",
"metabolites":{
"3hcmrs7eACP_c":1.0,
"3ocmrs7eACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR141"
]
},
"annotation":{
"bigg.reaction":[
"3OAR141"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94945"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07989"
]
}
},
{
"id":"3OAR160",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:0)",
"metabolites":{
"3hpalmACP_c":1.0,
"3opalmACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR160"
]
},
"annotation":{
"bigg.reaction":[
"3OAR160"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04543"
],
"metanetx.reaction":[
"MNXR94946"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05336"
]
}
},
{
"id":"3OAR161",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:1)",
"metabolites":{
"3hcpalm9eACP_c":1.0,
"3ocpalm9eACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR161"
]
},
"annotation":{
"bigg.reaction":[
"3OAR161"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94947"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07991"
]
}
},
{
"id":"EX_4hbz_e",
"name":"EX 4hbz LPAREN e RPAREN ",
"metabolites":{
"4hbz_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0270150016471934,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4hbz_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4hbz_e"
],
"metanetx.reaction":[
"MNXR95013"
],
"sabiork":[
"12859"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12787",
"rxn09792"
]
}
},
{
"id":"EX_meoh_e",
"name":"Methanol exchange",
"metabolites":{
"meoh_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_meoh_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_meoh_e"
],
"biocyc":[
"META:TRANS-RXN0-459"
],
"metanetx.reaction":[
"MNXR101464"
],
"rhea":[
"34873",
"34872",
"34874",
"34871"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10570"
]
}
},
{
"id":"EX_Lcyst_e",
"name":"L-Cysteate exchange",
"metabolites":{
"Lcyst_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_Lcyst_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_Lcyst_e"
],
"metanetx.reaction":[
"MNXR101035"
],
"sbo":"SBO:0000627"
}
},
{
"id":"3OAR180",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:0)",
"metabolites":{
"3hoctaACP_c":1.0,
"3ooctdACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR180"
]
},
"annotation":{
"bigg.reaction":[
"3OAR180"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94948"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07992"
]
}
},
{
"id":"3OAR181",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:1)",
"metabolites":{
"3hcvac11eACP_c":1.0,
"3ocvac11eACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR181"
]
},
"annotation":{
"bigg.reaction":[
"3OAR181"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94949"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07993"
]
}
},
{
"id":"3OAR40",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C4:0)",
"metabolites":{
"3haACP_c":1.0,
"actACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR40"
]
},
"annotation":{
"bigg.reaction":[
"3OAR40"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94950"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07994"
]
}
},
{
"id":"EX_mg2_e",
"name":"Mg exchange",
"metabolites":{
"mg2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mg2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mg2_e"
],
"biocyc":[
"META:TRANS-RXN-141"
],
"metanetx.reaction":[
"MNXR101507"
],
"reactome.reaction":[
"R-MMU-442661",
"R-OSA-5336466",
"R-BTA-5336453",
"R-SSC-442661",
"R-MMU-5336453",
"R-HSA-5339528",
"R-MMU-5336466",
"R-TGU-5339538",
"R-SCE-5336466",
"R-SCE-5339538",
"R-XTR-5336466",
"R-GGA-442661",
"R-ATH-5336453",
"R-BTA-5336466",
"R-RNO-5339538",
"R-SSC-5339538",
"R-SPO-5339528",
"R-DME-5339528",
"R-GGA-5339538",
"R-CEL-5336453",
"R-TGU-5336453",
"R-OSA-5336453",
"R-SCE-5339528",
"R-ATH-5336466",
"R-CFA-5336453",
"R-CEL-5339528",
"R-SPO-5339538",
"R-SSC-5336466",
"R-XTR-5339528",
"R-SSC-5339528",
"R-DRE-5339528",
"R-BTA-5339528",
"R-CFA-442661",
"R-CFA-5339538",
"R-DME-442661",
"R-DME-5339538",
"R-DRE-5339538",
"R-MMU-5339538",
"R-RNO-442661",
"R-RNO-5336453",
"R-DDI-5336466",
"R-RNO-5339528",
"R-HSA-442661",
"R-HSA-5336453",
"R-TGU-5336466",
"R-DRE-5336466",
"R-BTA-442661",
"R-DRE-5336453",
"R-HSA-5339538",
"R-HSA-5336454",
"R-TGU-5339528",
"R-GGA-5339528",
"R-XTR-5339538",
"R-MMU-5339528",
"R-DME-5336453",
"R-RNO-5336466",
"R-CFA-5336466",
"R-CEL-442661",
"R-SPO-5336466",
"R-GGA-5336453",
"R-BTA-5339538",
"R-TGU-442661",
"R-HSA-5336466",
"R-XTR-442661",
"R-CEL-5339538",
"R-MMU-5336430",
"R-DRE-442661",
"R-GGA-5336466",
"R-CFA-5339528"
],
"rhea":[
"29827",
"29828",
"29829",
"29830"
],
"sabiork":[
"12062"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05616",
"rxn08922",
"rxn08923"
]
}
},
{
"id":"3OAR60",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0)",
"metabolites":{
"3hhexACP_c":1.0,
"3ohexACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR60"
]
},
"annotation":{
"bigg.reaction":[
"3OAR60"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04953"
],
"metanetx.reaction":[
"MNXR94952"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05337"
]
}
},
{
"id":"EX_ac_e",
"name":"Acetate exchange",
"metabolites":{
"ac_e":-1.0
},
"lower_bound":-8.88,
"upper_bound":-6.84,
"gene_reaction_rule":"",
"objective_coefficient":-0.00593012231279861,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ac_e"
],
"biocyc":[
"META:RXN0-1981",
"META:TRANS-RXN0-567"
],
"metanetx.reaction":[
"MNXR95431"
],
"rhea":[
"27817",
"27814",
"27816",
"27815"
],
"sabiork":[
"12184"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09787",
"rxn09866",
"rxn10904",
"rxn08063"
]
}
},
{
"id":"EX_aso4_e",
"name":"Arsenate exchange",
"metabolites":{
"aso4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_aso4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_aso4_e"
],
"metanetx.reaction":[
"MNXR96076"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05506"
]
}
},
{
"id":"EX_btoh_e",
"name":"Butanol exchange",
"metabolites":{
"btoh_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.032286221480792,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_btoh_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_btoh_e"
],
"metanetx.reaction":[
"MNXR96338"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_but_e",
"name":"Butyrate (n-C4:0) exchange",
"metabolites":{
"but_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0263560991679934,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_but_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_but_e"
],
"metanetx.reaction":[
"MNXR96352"
],
"sbo":"SBO:0000627"
}
},
{
"id":"3OAR80",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0)",
"metabolites":{
"3hoctACP_c":1.0,
"3ooctACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAR80"
]
},
"annotation":{
"bigg.reaction":[
"3OAR80"
],
"biocyc":[
"META:RXN-9524"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04536"
],
"metanetx.reaction":[
"MNXR94953"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05341"
]
}
},
{
"id":"3OAS100",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C10:0)",
"metabolites":{
"3odecACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"ocACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS100"
]
},
"annotation":{
"bigg.reaction":[
"3OAS100"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94954"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAS120",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:0)",
"metabolites":{
"3oddecACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"dcaACP_c":-1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS120"
]
},
"annotation":{
"bigg.reaction":[
"3OAS120"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94955"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAS121",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:1)",
"metabolites":{
"3ocddec5eACP_c":1.0,
"ACP_c":1.0,
"cdec3eACP_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS121"
]
},
"annotation":{
"bigg.reaction":[
"3OAS121"
],
"ec-code":[
"2.3.1.41"
],
"metanetx.reaction":[
"MNXR94956"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAS140",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0)",
"metabolites":{
"3omrsACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"ddcaACP_c":-1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS140"
]
},
"annotation":{
"bigg.reaction":[
"3OAS140"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94957"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_butso3_e",
"name":"Butanesulfonate exchange",
"metabolites":{
"butso3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_butso3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_butso3_e"
],
"metanetx.reaction":[
"MNXR96351"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08182"
]
}
},
{
"id":"3OAS141",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:1)",
"metabolites":{
"3ocmrs7eACP_c":1.0,
"ACP_c":1.0,
"cddec5eACP_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS141"
]
},
"annotation":{
"bigg.reaction":[
"3OAS141"
],
"ec-code":[
"2.3.1.41"
],
"metanetx.reaction":[
"MNXR94958"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_mn2_e",
"name":"Mn2+ exchange",
"metabolites":{
"mn2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mn2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mn2_e"
],
"biocyc":[
"META:RXN0-16",
"META:TRANS-RXN0-487"
],
"metanetx.reaction":[
"MNXR101670"
],
"rhea":[
"28702",
"28699",
"28700",
"28701"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08952",
"rxn08947"
]
}
},
{
"id":"3OAS160",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:0)",
"metabolites":{
"3opalmACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"myrsACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS160"
]
},
"annotation":{
"bigg.reaction":[
"3OAS160"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94959"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAS161",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1)",
"metabolites":{
"3ocpalm9eACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"tdeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS161"
]
},
"annotation":{
"bigg.reaction":[
"3OAS161"
],
"ec-code":[
"2.3.1.41"
],
"metanetx.reaction":[
"MNXR94960"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_bz_e",
"name":"Benzoate exchange",
"metabolites":{
"bz_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0309684165223925,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_bz_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_bz_e"
],
"metanetx.reaction":[
"MNXR96370"
],
"rhea":[
"32812",
"32813",
"32811",
"32814"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12436"
]
}
},
{
"id":"EX_bzal_e",
"name":"Benzaldehyde exchange",
"metabolites":{
"bzal_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.032945123959992,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_bzal_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_bzal_e"
],
"metanetx.reaction":[
"MNXR96364"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_bzalc_e",
"name":"Benzyl alcohol exchange",
"metabolites":{
"bzalc_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0368985388351911,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_bzalc_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_bzalc_e"
],
"metanetx.reaction":[
"MNXR96361"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12384"
]
}
},
{
"id":"3OAS180",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:0)",
"metabolites":{
"3ooctdACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"palmACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS180"
]
},
"annotation":{
"bigg.reaction":[
"3OAS180"
],
"ec-code":[
"2.3.1.41"
],
"metanetx.reaction":[
"MNXR94961"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_ca2_e",
"name":"Calcium exchange",
"metabolites":{
"ca2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ca2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ca2_e"
],
"biocyc":[
"META:TRANS-RXN0-497",
"META:TRANS-RXN-144"
],
"ec-code":[
"3.6.3.8"
],
"metanetx.reaction":[
"MNXR96436"
],
"reactome.reaction":[
"R-HSA-210420",
"R-GGA-139855",
"R-HSA-432164",
"R-HSA-8863009",
"R-DME-2089943",
"R-CEL-2089943",
"R-CFA-3295579",
"R-TGU-5577213",
"R-SSC-2685505",
"R-RNO-210420",
"R-RNO-418309",
"R-TGU-5263618",
"R-DME-139854",
"R-SCE-418309",
"R-SSC-2534359",
"R-SSC-5263618",
"R-DRE-5263618",
"R-GGA-265645",
"R-RNO-3295579",
"R-ATH-2685505",
"R-TGU-265645",
"R-XTR-5263618",
"R-XTR-139854",
"R-XTR-418309",
"R-MMU-5263618",
"R-TGU-139854",
"R-GGA-418309",
"R-SSC-139854",
"R-CFA-418309",
"R-CEL-432164",
"R-SSC-2855020",
"R-DME-432164",
"R-DRE-139855",
"R-CEL-3295579",
"R-CFA-2089943",
"R-CFA-265645",
"R-GGA-432164",
"R-RNO-432164",
"R-MMU-2089943",
"R-GGA-2855020",
"R-CFA-2534359",
"R-RNO-182097",
"R-SSC-139855",
"R-CEL-139854",
"R-DRE-432164",
"R-SSC-418309",
"R-RNO-139854",
"R-DME-3295579",
"R-TGU-3295579",
"R-HSA-5263618",
"R-DDI-2685505",
"R-HSA-2534359",
"R-TGU-139855",
"R-XTR-5577213",
"R-CFA-5577213",
"R-DDI-3295579",
"R-HSA-2685505",
"R-XTR-210420",
"R-HSA-3295579",
"R-HSA-2855020",
"R-GGA-210420",
"R-DRE-2089943",
"R-CFA-2855020",
"R-RNO-139855",
"R-DME-418309",
"R-MMU-432164",
"R-BTA-139855",
"R-HSA-139854",
"R-DDI-418309",
"R-HSA-5577213",
"R-GGA-2089943",
"R-BTA-139854",
"R-CFA-2685505",
"R-MMU-2855020",
"R-HSA-418309",
"R-BTA-5577213",
"R-HSA-434798",
"R-XTR-2089943",
"R-BTA-2685505",
"R-MMU-418309",
"R-SSC-210420",
"R-HSA-169683",
"R-SSC-2089943",
"R-DRE-5577213",
"R-ATH-418309",
"R-RNO-2089943",
"R-RNO-265645",
"R-BTA-2855020",
"R-XTR-3295579",
"R-MMU-2685505",
"R-MMU-265645",
"R-CFA-139855",
"R-TGU-2685505",
"R-CFA-139854",
"R-CEL-418309",
"R-GGA-2685505",
"R-GGA-139854",
"R-XTR-2855020",
"R-BTA-265645",
"R-RNO-5263618",
"R-SSC-3295579",
"R-HSA-2089943",
"R-TGU-2855020",
"R-BTA-418309",
"R-DRE-139854",
"R-DRE-265645",
"R-GGA-3295579",
"R-XTR-2685505",
"R-BTA-2089943",
"R-MMU-210420",
"R-XTR-139855",
"R-SSC-265645",
"R-CFA-210420",
"R-XTR-265645",
"R-DME-434802",
"R-TGU-418309",
"R-MMU-3295579",
"R-RNO-2855020",
"R-SSC-5577213",
"R-OSA-2685505",
"R-HSA-4420052",
"R-DRE-2855020",
"R-BTA-5263618",
"R-GGA-5263618",
"R-CEL-5263618",
"R-RNO-2685505",
"R-GGA-5577213",
"R-BTA-210420",
"R-DRE-3295579",
"R-HSA-139855",
"R-DRE-210420",
"R-DRE-2685505",
"R-RNO-2534359",
"R-TGU-2089943",
"R-CFA-5263618",
"R-MMU-2534359",
"R-TGU-432164",
"R-BTA-2534359",
"R-MMU-139855",
"R-MMU-5577213",
"R-CFA-432164",
"R-XTR-432164",
"R-CEL-265645",
"R-SPO-418309",
"R-RNO-5577213",
"R-HSA-265645",
"R-OSA-418309",
"R-DRE-418309",
"R-BTA-3295579",
"R-TGU-210420",
"R-MMU-139854",
"R-SSC-432164",
"R-BTA-432164",
"R-DME-5263618"
],
"rhea":[
"29671",
"29674",
"29673",
"29672"
],
"sabiork":[
"12376"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08186"
]
}
},
{
"id":"3OAS181",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:1)",
"metabolites":{
"3ocvac11eACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"hdeACP_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS181"
]
},
"annotation":{
"bigg.reaction":[
"3OAS181"
],
"ec-code":[
"2.3.1.179"
],
"metanetx.reaction":[
"MNXR94962"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAS60",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0)",
"metabolites":{
"3ohexACP_c":1.0,
"ACP_c":1.0,
"butACP_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS60"
]
},
"annotation":{
"bigg.reaction":[
"3OAS60"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94963"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_cd2_e",
"name":"Cadmium exchange",
"metabolites":{
"cd2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cd2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cd2_e"
],
"biocyc":[
"META:RXN0-10"
],
"metanetx.reaction":[
"MNXR96499"
],
"rhea":[
"28709",
"28708",
"28707",
"28710"
],
"sabiork":[
"13041"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08198",
"rxn08197"
]
}
},
{
"id":"EX_mn4_e",
"name":"Mn4+ exchange",
"metabolites":{
"mn4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mn4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mn4_e"
],
"metanetx.reaction":[
"MNXR143033"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_cl_e",
"name":"Chloride exchange",
"metabolites":{
"cl_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cl_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cl_e"
],
"biocyc":[
"META:TRANS-RXN-139"
],
"metanetx.reaction":[
"MNXR96797"
],
"reactome.reaction":[
"R-TGU-975340",
"R-OSA-2684901",
"R-RNO-2744228",
"R-DDI-2744228",
"R-HSA-2744228",
"R-SSC-975449",
"R-CFA-2744242",
"R-CFA-975449",
"R-GGA-975389",
"R-TGU-975449",
"R-HSA-2684901",
"R-DRE-2744349",
"R-RNO-975449",
"R-GGA-427570",
"R-XTR-2684901",
"R-SSC-2744349",
"R-BTA-2684901",
"R-HSA-427570",
"R-TGU-975389",
"R-BTA-2744349",
"R-DME-2684901",
"R-SSC-2684901",
"R-SSC-975389",
"R-BTA-975389",
"R-MMU-975389",
"R-TGU-2744242",
"R-DME-2744242",
"R-CEL-975340",
"R-PFA-427570",
"R-GGA-975449",
"R-XTR-427570",
"R-CFA-975389",
"R-DRE-975449",
"R-SSC-427570",
"R-XTR-2744349",
"R-CEL-427570",
"R-DME-2744349",
"R-HSA-2744242",
"R-GGA-2744228",
"R-SSC-975340",
"R-BTA-2744228",
"R-CEL-975389",
"R-HSA-975340",
"R-DME-975389",
"R-DRE-2684901",
"R-RNO-2744242",
"R-MMU-975449",
"R-CFA-427570",
"R-DME-427570",
"R-HSA-975449",
"R-SSC-2744242",
"R-DRE-2744228",
"R-DRE-2744242",
"R-RNO-975340",
"R-GGA-2744242",
"R-RNO-2744361",
"R-MMU-2744361",
"R-BTA-975340",
"R-SCE-427570",
"R-OSA-427570",
"R-GGA-975340",
"R-RNO-427570",
"R-XTR-975340",
"R-MMU-2684901",
"R-CFA-2744361",
"R-CFA-975340",
"R-MMU-2744242",
"R-RNO-2744349",
"R-TGU-2744228",
"R-DME-2744228",
"R-DRE-2744361",
"R-BTA-427570",
"R-SSC-2744228",
"R-SSC-2744361",
"R-DDI-427570",
"R-CEL-2684901",
"R-MMU-2744349",
"R-CFA-2744228",
"R-MMU-975340",
"R-XTR-2744228",
"R-XTR-2744361",
"R-BTA-975449",
"R-SPO-2684901",
"R-ATH-427570",
"R-TGU-427570",
"R-BTA-2744242",
"R-CFA-2744349",
"R-GGA-2684901",
"R-DDI-2684901",
"R-CFA-2684901",
"R-DRE-975389",
"R-MMU-2744228",
"R-RNO-975389",
"R-HSA-2744349",
"R-BTA-2744361",
"R-GGA-2744361",
"R-RNO-2684901",
"R-XTR-975449",
"R-TGU-2684901",
"R-CEL-2744228",
"R-DRE-975340",
"R-XTR-975389",
"R-DME-2744361",
"R-HSA-975389",
"R-MMU-427570",
"R-HSA-2744361",
"R-CEL-2744361",
"R-TGU-2744361",
"R-XTR-2744242",
"R-DME-975340",
"R-SCE-2744228",
"R-ATH-2684901"
],
"rhea":[
"29823",
"29824",
"29826",
"29825"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10473",
"rxn08234"
]
}
},
{
"id":"EX_co2_e",
"name":"CO2 exchange",
"metabolites":{
"co2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_co2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_co2_e"
],
"biocyc":[
"META:TRANS-RXN0-545"
],
"metanetx.reaction":[
"MNXR96810"
],
"reactome.reaction":[
"R-DDI-1247645",
"R-CFA-1237069",
"R-TGU-1247649",
"R-CFA-1237042",
"R-CEL-1247645",
"R-XTR-1237069",
"R-HSA-1247645",
"R-OSA-1237042",
"R-GGA-1237042",
"R-BTA-1247645",
"R-GGA-1247649",
"R-RNO-1247645",
"R-XTR-1247645",
"R-TGU-1237042",
"R-SCE-1247649",
"R-MMU-1247649",
"R-CFA-1247649",
"R-GGA-1247645",
"R-SSC-1247645",
"R-BTA-1237069",
"R-RNO-1237069",
"R-SCE-1237042",
"R-DDI-1247649",
"R-SSC-1237042",
"R-DRE-1247649",
"R-DRE-1237042",
"R-DDI-1237042",
"R-DME-1237042",
"R-MMU-1237042",
"R-SSC-1247649",
"R-TGU-1237069",
"R-BTA-1247649",
"R-CFA-1247645",
"R-RNO-1247649",
"R-HSA-1237069",
"R-CEL-1237069",
"R-DDI-1237069",
"R-MMU-1237069",
"R-DME-1247645",
"R-ATH-1237042",
"R-OSA-1247649",
"R-HSA-1237042",
"R-DRE-1247645",
"R-HSA-1247649",
"R-MMU-1247645",
"R-DME-1237069",
"R-RNO-1237042",
"R-TGU-1247645",
"R-BTA-1237042",
"R-GGA-1237069",
"R-DME-1247649",
"R-SSC-1237069",
"R-DRE-1237069",
"R-ATH-1247649"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05467",
"rxn08237",
"rxn09706",
"rxn09821",
"rxn09775",
"rxn09876",
"rxn08238",
"rxn09860"
]
}
},
{
"id":"EX_cobalt2_e",
"name":"Co2+ exchange",
"metabolites":{
"cobalt2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cobalt2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cobalt2_e"
],
"biocyc":[
"META:TRANS-RXN-141A"
],
"metanetx.reaction":[
"MNXR96821"
],
"rhea":[
"28579",
"28580",
"28581",
"28578"
],
"sabiork":[
"12148"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08241",
"rxn08242",
"rxn10474"
]
}
},
{
"id":"3OAS80",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C8:0)",
"metabolites":{
"3ooctACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"hexACP_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"_3OAS80"
]
},
"annotation":{
"bigg.reaction":[
"3OAS80"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94964"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3PEPTabcpp",
"name":"Tripeptide (LalaDgluMdap) transport via ABC system (periplasm)",
"metabolites":{
"LalaDgluMdap_c":1.0,
"LalaDgluMdap_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"_3PEPTabcpp"
]
},
"annotation":{
"bigg.reaction":[
"3PEPTabcpp"
],
"metanetx.reaction":[
"MNXR94970"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08003"
]
}
},
{
"id":"4HBALDt2pp",
"name":"4-hydroxybenzoaldehyde transport in via proton symport  (periplasm)",
"metabolites":{
"4hbald_c":1.0,
"4hbald_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"_4HBALDt2pp"
]
},
"annotation":{
"bigg.reaction":[
"4HBALDt2pp"
],
"metanetx.reaction":[
"MNXR95005"
],
"sbo":"SBO:0000185"
}
},
{
"id":"4HBALDtex",
"name":"4-hydroxybenzaldehyde transport via diffusion (extracellular to periplasm)",
"metabolites":{
"4hbald_e":-1.0,
"4hbald_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"_4HBALDtex"
]
},
"annotation":{
"bigg.reaction":[
"4HBALDtex"
],
"metanetx.reaction":[
"MNXR95006"
],
"sbo":"SBO:0000185"
}
},
{
"id":"4HBAtex",
"name":"4-hydroxy-benzyl alcohol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"4hba_e":-1.0,
"4hba_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"_4HBAtex"
]
},
"annotation":{
"bigg.reaction":[
"4HBAtex"
],
"biocyc":[
"META:TRANS-RXN0-274"
],
"metanetx.reaction":[
"MNXR95007"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12376"
]
}
},
{
"id":"EX_cro4_e",
"name":"Chromate exchange",
"metabolites":{
"cro4_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cro4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cro4_e"
],
"metanetx.reaction":[
"MNXR96914"
],
"rhea":[
"32819",
"32822",
"32821",
"32820"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_cu_e",
"name":"Cu+ exchange",
"metabolites":{
"cu_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cu_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cu_e"
],
"metanetx.reaction":[
"MNXR96954"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_cu2_e",
"name":"Cu2+ exchange",
"metabolites":{
"cu2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cu2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cu2_e"
],
"biocyc":[
"META:RXN0-14"
],
"metanetx.reaction":[
"MNXR96951"
],
"reactome.reaction":[
"R-HSA-437300",
"R-DME-437300",
"R-RNO-437300",
"R-SCE-437300",
"R-DRE-437300",
"R-XTR-437300",
"R-TGU-437300",
"R-BTA-437300",
"R-CFA-437300",
"R-SSC-437300",
"R-MMU-437300",
"R-GGA-437300"
],
"rhea":[
"28705",
"28706",
"28704",
"28703"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08274",
"rxn05212",
"rxn08273"
]
}
},
{
"id":"4HBCOAH",
"name":"4-hydroxybutanoyl-CoA dehydratase",
"metabolites":{
"4hbutcoa_c":-1.0,
"h2o_c":1.0,
"vaccoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2215",
"objective_coefficient":-0.0131780495839964,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"_4HBCOAH"
]
},
"annotation":{
"bigg.reaction":[
"4HBCOAH"
],
"kegg.reaction":[
"R05337"
],
"metanetx.reaction":[
"MNXR95008"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03642"
]
}
},
{
"id":"4HBZR",
"name":"4-hydroxybenzoylCoA reducatse",
"metabolites":{
"4hbzcoa_c":-1.0,
"benzcoa_c":1.0,
"fdxo_42_c":1.0,
"fdxr_42_c":-1.0,
"h2o_c":1.0,
"h_c":-6.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2134 and Gmet_2135 and Gmet_2136",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"_4HBZR"
]
},
"annotation":{
"bigg.reaction":[
"4HBZR"
],
"metanetx.reaction":[
"MNXR95012"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_ddca_e",
"name":"Dodecanoate (n-C12:0) exchange",
"metabolites":{
"ddca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.108060006588773,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ddca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ddca_e"
],
"metanetx.reaction":[
"MNXR97211"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_mobd_e",
"name":"Molybdate exchange",
"metabolites":{
"mobd_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mobd_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mobd_e"
],
"metanetx.reaction":[
"MNXR101690"
],
"rhea":[
"34909",
"34907",
"34910",
"34908"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08956"
]
}
},
{
"id":"EX_elao_e",
"name":"Electrode (oxidized) exchange",
"metabolites":{
"elao_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_elao_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_elao_e"
],
"metanetx.reaction":[
"MNXR142952"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_elar_e",
"name":"Electrode (reduced) exchange",
"metabolites":{
"elar_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_elar_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_elar_e"
],
"metanetx.reaction":[
"MNXR142953"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_elco_e",
"name":"Cathode (Oxidized) exchange",
"metabolites":{
"elco_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_elco_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_elco_e"
],
"metanetx.reaction":[
"MNXR142954"
],
"sbo":"SBO:0000627"
}
},
{
"id":"UHBZ1t_pp",
"name":"UHBZ1t LPAREN pp RPAREN ",
"metabolites":{
"4hbz_c":1.0,
"4hbz_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"_4HBZt2pp"
]
},
"annotation":{
"bigg.reaction":[
"UHBZ1t_pp"
],
"metanetx.reaction":[
"MNXR105109"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12549",
"rxn12680"
]
}
},
{
"id":"EX_elcr_e",
"name":"Cathode (reduced) exchange",
"metabolites":{
"elcr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00197670743759954,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_elcr_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_elcr_e"
],
"metanetx.reaction":[
"MNXR142955"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_mso3_e",
"name":"Methanesulfonate exchange",
"metabolites":{
"mso3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mso3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mso3_e"
],
"metanetx.reaction":[
"MNXR101742"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08960"
]
}
},
{
"id":"EX_ethso3_e",
"name":"Ethanesulfonate exchange",
"metabolites":{
"ethso3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ethso3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ethso3_e"
],
"metanetx.reaction":[
"MNXR97978"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08426"
]
}
},
{
"id":"EX_etoh_e",
"name":"Ethanol exchange",
"metabolites":{
"etoh_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0319567702411921,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_etoh_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_etoh_e"
],
"biocyc":[
"META:TRANS-RXN0-546"
],
"metanetx.reaction":[
"MNXR97980"
],
"rhea":[
"35269",
"35267",
"35270",
"35268"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09683",
"rxn08428",
"rxn09764"
]
}
},
{
"id":"EX_fe2_e",
"name":"Fe2+ exchange",
"metabolites":{
"fe2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe2_e"
],
"biocyc":[
"META:TRANS-RXN-8"
],
"metanetx.reaction":[
"MNXR99505"
],
"rhea":[
"28488",
"28487",
"28489",
"28486"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08476",
"rxn08475",
"rxn13286",
"rxn10963"
]
}
},
{
"id":"4HBZtex",
"name":"4-Hydroxybenzoate transport (extracellular)",
"metabolites":{
"4hbz_e":-1.0,
"4hbz_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"_4HBZtex"
]
},
"annotation":{
"bigg.reaction":[
"4HBZtex"
],
"metanetx.reaction":[
"MNXR95013"
],
"sabiork":[
"12859"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12787",
"rxn09792"
]
}
},
{
"id":"4PCP",
"name":"Tetrapeptide L,D-carboxypeptidase",
"metabolites":{
"LalaDgluMdapDala_c":-1.0,
"LalaDgluMdap_c":1.0,
"ala__D_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"_4PCP"
]
},
"annotation":{
"bigg.reaction":[
"4PCP"
],
"metanetx.reaction":[
"MNXR95049"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08007"
]
}
},
{
"id":"4PCPpp",
"name":"Tetrapeptide L,D-carboxypeptidase (periplasm)",
"metabolites":{
"LalaDgluMdapDala_p":-1.0,
"LalaDgluMdap_p":1.0,
"ala__D_p":1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00197670743759957,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"_4PCPpp"
]
},
"annotation":{
"bigg.reaction":[
"4PCPpp"
],
"metanetx.reaction":[
"MNXR95049"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08007"
]
}
},
{
"id":"4PEPTabcpp",
"name":"Tetrapeptide (LalaDgluMdapDala) transport via ABC system (periplasm)",
"metabolites":{
"LalaDgluMdapDala_c":1.0,
"LalaDgluMdapDala_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"_4PEPTabcpp"
]
},
"annotation":{
"bigg.reaction":[
"4PEPTabcpp"
],
"metanetx.reaction":[
"MNXR95050"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08008"
]
}
},
{
"id":"EX_fe3_e",
"name":"Fe3+ exchange",
"metabolites":{
"fe3_e":-1.0
},
"lower_bound":-67.37,
"upper_bound":-49.21,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe3_e"
],
"metanetx.reaction":[
"MNXR99522"
],
"reactome.reaction":[
"R-RNO-442368",
"R-HSA-442368",
"R-BTA-442368",
"R-SSC-442368",
"R-MMU-442368",
"R-CFA-442368",
"R-GGA-442368",
"R-TGU-442368"
],
"rhea":[
"34973",
"34972",
"34974",
"34971"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05292",
"rxn08492"
]
}
},
{
"id":"EX_n2_e",
"name":"N2 exchange",
"metabolites":{
"n2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_n2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_n2_e"
],
"metanetx.reaction":[
"MNXR101799"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10577"
]
}
},
{
"id":"EX_for_e",
"name":"Formate exchange",
"metabolites":{
"for_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00395341487519913,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_for_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_for_e"
],
"biocyc":[
"META:TRANS-RXN-1"
],
"metanetx.reaction":[
"MNXR99620"
],
"reactome.reaction":[
"R-HSA-6803255"
],
"rhea":[
"29681",
"29680",
"29682",
"29679"
],
"sabiork":[
"12483"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09754",
"rxn08525",
"rxn09682",
"rxn08526"
]
}
},
{
"id":"5DOAN",
"name":"5'-deoxyadenosine nuclosidase",
"metabolites":{
"5drib_c":1.0,
"ade_c":1.0,
"dad_5_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"_5DOAN"
]
},
"annotation":{
"bigg.reaction":[
"5DOAN"
],
"biocyc":[
"META:RXN0-6550"
],
"metanetx.reaction":[
"MNXR95069"
],
"rhea":[
"29862",
"29860",
"29859",
"29861"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13649",
"rxn08013"
]
}
},
{
"id":"5HBZIDMT",
"name":"5-hydroxybenzimidazole methyltransferase",
"metabolites":{
"5hbzid_c":-1.0,
"ahcys_c":2.0,
"amet_c":-2.0,
"dmbzid_c":1.0,
"h2o_c":1.0,
"h_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"_5HBZIDMT"
]
},
"annotation":{
"bigg.reaction":[
"5HBZIDMT"
],
"metanetx.reaction":[
"MNXR95075"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_na1_e",
"name":"Sodium exchange",
"metabolites":{
"na1_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_na1_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_na1_e"
],
"biocyc":[
"META:TRANS-RXN-189"
],
"metanetx.reaction":[
"MNXR101804"
],
"reactome.reaction":[
"R-TGU-2671885",
"R-MMU-3295580",
"R-GGA-5576895",
"R-GGA-2672334",
"R-BTA-2672334",
"R-DRE-2671885",
"R-MMU-2730664",
"R-BTA-3295580",
"R-BTA-2730664",
"R-CFA-3295580",
"R-XTR-2672334",
"R-RNO-2671885",
"R-HSA-2671885",
"R-RNO-2730664",
"R-SSC-2671885",
"R-HSA-3295580",
"R-SSC-2672334",
"R-TGU-2672334",
"R-DRE-5576895",
"R-CEL-2730664",
"R-HSA-5576895",
"R-MMU-2672334",
"R-BTA-5576895",
"R-TGU-2730664",
"R-CFA-2672334",
"R-HSA-2730664",
"R-CFA-5576895",
"R-XTR-2671885",
"R-XTR-5576895",
"R-CFA-2730664",
"R-DME-2730664",
"R-XTR-3295580",
"R-GGA-3295580",
"R-BTA-2671885",
"R-DRE-3295580",
"R-MMU-2671885",
"R-SSC-3295580",
"R-CEL-3295580",
"R-GGA-2671885",
"R-GGA-2730664",
"R-HSA-2672334",
"R-SSC-5576895",
"R-CEL-2671885",
"R-DME-3295580",
"R-RNO-2672334",
"R-RNO-3295580",
"R-MMU-5576895",
"R-RNO-5576895",
"R-TGU-3295580",
"R-XTR-2730664",
"R-CFA-2671885"
],
"rhea":[
"34963",
"34966",
"34965",
"34964"
],
"sabiork":[
"12962"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08985",
"rxn10899"
]
}
},
{
"id":"5HBZIDS2",
"name":"5-hydroxybenzimidazole synthase",
"metabolites":{
"5hbzid_c":1.0,
"air_c":-1.0,
"for_c":1.0,
"nh4_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0471",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"_5HBZIDS2"
]
},
"annotation":{
"bigg.reaction":[
"5HBZIDS2"
],
"metanetx.reaction":[
"MNXR95077"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_galur_e",
"name":"D-Galacturonate exchange",
"metabolites":{
"galur_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_galur_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_galur_e"
],
"metanetx.reaction":[
"MNXR100021"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08589"
]
}
},
{
"id":"EX_nh4_e",
"name":"Ammonia exchange",
"metabolites":{
"nh4_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_nh4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_nh4_e"
],
"biocyc":[
"META:TRANS-RXN0-206",
"META:RXN-9615",
"META:TRANS-RXN0-544"
],
"metanetx.reaction":[
"MNXR101950"
],
"reactome.reaction":[
"R-CEL-444416",
"R-SSC-444416",
"R-DDI-444416",
"R-MMU-444416",
"R-DRE-444416",
"R-GGA-444416",
"R-CFA-444416",
"R-HSA-444416",
"R-XTR-444416",
"R-BTA-444416",
"R-RNO-444416",
"R-TGU-444416",
"R-DME-444416"
],
"rhea":[
"28749",
"28748",
"28750",
"28747"
],
"sabiork":[
"11683"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13364",
"rxn09835",
"rxn05466",
"rxn08987",
"rxn08986",
"rxn09736"
]
}
},
{
"id":"EX_glcur_e",
"name":"D-Glucuronate exchange",
"metabolites":{
"glcur_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glcur_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glcur_e"
],
"metanetx.reaction":[
"MNXR100235"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08623"
]
}
},
{
"id":"EX_glyc_e",
"name":"Glycerol exchange",
"metabolites":{
"glyc_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0309684165223924,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glyc_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glyc_e"
],
"biocyc":[
"META:TRANS-RXN-131"
],
"metanetx.reaction":[
"MNXR100343"
],
"reactome.reaction":[
"R-RNO-507871",
"R-SCE-507871",
"R-MMU-432049",
"R-GGA-507869",
"R-SCE-432049",
"R-MMU-507869",
"R-CEL-507869",
"R-SPO-432049",
"R-TGU-432049",
"R-HSA-507871",
"R-PFA-432074",
"R-GGA-432049",
"R-PFA-432049",
"R-BTA-432049",
"R-MMU-507871",
"R-CEL-507871",
"R-XTR-507871",
"R-HSA-507869",
"R-SCE-507869",
"R-DRE-507869",
"R-PFA-507869",
"R-TGU-507869",
"R-RNO-507869",
"R-MMU-432074",
"R-SPO-432074",
"R-BTA-432074",
"R-CFA-432074",
"R-CEL-432074",
"R-PFA-507871",
"R-SSC-432074",
"R-CFA-507871",
"R-SPO-507871",
"R-BTA-507871",
"R-XTR-432049",
"R-HSA-432049",
"R-DRE-432074",
"R-CFA-432049",
"R-SPO-507869",
"R-GGA-432074",
"R-HSA-432074",
"R-RNO-432074",
"R-SCE-432074",
"R-TGU-507871",
"R-GGA-507871",
"R-DRE-432049",
"R-BTA-507869",
"R-SSC-507871",
"R-XTR-432074",
"R-XTR-507869",
"R-CFA-507869",
"R-RNO-432049",
"R-SSC-507869",
"R-SSC-432049",
"R-TGU-432074",
"R-CEL-432049",
"R-DRE-507871"
],
"rhea":[
"29676",
"29678",
"29677",
"29675"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05581",
"rxn08654",
"rxn08658"
]
}
},
{
"id":"EX_ni2_e",
"name":"Ni2+ exchange",
"metabolites":{
"ni2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ni2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ni2_e"
],
"biocyc":[
"META:TRANS-RXN-141B"
],
"metanetx.reaction":[
"MNXR101958"
],
"rhea":[
"29833",
"29831",
"29834",
"29832"
],
"sbo":"SBO:0000627"
}
},
{
"id":"CPH4S",
"name":"6-carboxy-5,6,7,8-tetrahydropterin synthase",
"metabolites":{
"acald_c":1.0,
"ahdt_c":-1.0,
"cph4_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1657",
"objective_coefficient":-0.12585037352717,
"subsystem":"Queuosine biosynthesis",
"notes":{
"original_bigg_ids":[
"_6CTDS"
]
},
"annotation":{
"bigg.reaction":[
"CPH4S"
],
"biocyc":[
"META:RXN0-5507"
],
"ec-code":[
"4.1.2.50"
],
"kegg.reaction":[
"R09959"
],
"metanetx.reaction":[
"MNXR95095"
],
"rhea":[
"27969",
"27968",
"27967",
"27966"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_no2_e",
"name":"Nitrite exchange",
"metabolites":{
"no2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00593012231279877,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_no2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_no2_e"
],
"biocyc":[
"META:TRANS-RXN-137"
],
"metanetx.reaction":[
"MNXR101912"
],
"rhea":[
"28983",
"28986",
"28984",
"28985"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10823",
"rxn08999"
]
}
},
{
"id":"EX_no3_e",
"name":"Nitrate exchange",
"metabolites":{
"no3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0177903669383959,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_no3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_no3_e"
],
"metanetx.reaction":[
"MNXR101992"
],
"rhea":[
"34924",
"34926",
"34923",
"34925"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09005",
"rxn10935"
]
}
},
{
"id":"EX_ocdca_e",
"name":"Octadecanoate (n-C18:0) exchange",
"metabolites":{
"ocdca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.169337937154358,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ocdca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ocdca_e"
],
"metanetx.reaction":[
"MNXR99109"
],
"rhea":[
"39807",
"39808",
"39809",
"39810"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09034",
"rxn09669"
]
}
},
{
"id":"EX_ocdcea_e",
"name":"Octadecenoate (n-C18:1) exchange",
"metabolites":{
"ocdcea_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.165384522279159,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ocdcea_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ocdcea_e"
],
"metanetx.reaction":[
"MNXR99110"
],
"rhea":[
"33658",
"33655",
"33656",
"33657"
],
"sabiork":[
"10346"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_oxa_e",
"name":"Oxalate exchange",
"metabolites":{
"oxa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_oxa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_oxa_e"
],
"metanetx.reaction":[
"MNXR102238"
],
"sabiork":[
"14090"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_phenol_e",
"name":"Phenol exchange",
"metabolites":{
"phenol_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.011860244625597,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_phenol_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_phenol_e"
],
"metanetx.reaction":[
"MNXR102627"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_pi_e",
"name":"Phosphate exchange",
"metabolites":{
"pi_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pi_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pi_e"
],
"biocyc":[
"META:TRANS-RXN0-470"
],
"metanetx.reaction":[
"MNXR102871"
],
"rhea":[
"32824",
"32826",
"32825",
"32823"
],
"sabiork":[
"10985"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10838",
"rxn09722",
"rxn09121",
"rxn13178"
]
}
},
{
"id":"EX_ppa_e",
"name":"Propionate exchange",
"metabolites":{
"ppa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0144958545423963,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ppa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ppa_e"
],
"metanetx.reaction":[
"MNXR103094"
],
"sbo":"SBO:0000627"
}
},
{
"id":"A5PISO",
"name":"Arabinose-5-phosphate isomerase",
"metabolites":{
"ara5p_c":1.0,
"ru5p__D_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1278",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"A5PISO"
]
},
"annotation":{
"bigg.reaction":[
"A5PISO"
],
"biocyc":[
"META:DARAB5PISOM-RXN"
],
"ec-code":[
"5.3.1.13"
],
"kegg.reaction":[
"R01530"
],
"metanetx.reaction":[
"MNXR95132"
],
"rhea":[
"23105",
"23107",
"23104",
"23106"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01117"
]
}
},
{
"id":"EX_ppoh_e",
"name":"Propanol exchange",
"metabolites":{
"ppoh_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0204259768551949,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ppoh_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ppoh_e"
],
"metanetx.reaction":[
"MNXR103125"
],
"sbo":"SBO:0000627"
}
},
{
"id":"AACPS1",
"name":"Acyl-[acyl-carrier-protein] synthetase (n-C14:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"myrsACP_c":1.0,
"ppi_c":1.0,
"ttdca_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS1"
]
},
"annotation":{
"bigg.reaction":[
"AACPS1"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95138"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACONTb",
"name":"Aconitase (half-reaction B, Isocitrate hydro-lyase)",
"metabolites":{
"acon_C_c":-1.0,
"h2o_c":-1.0,
"icit_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1016 or Gmet_1912 or Gmet_2763",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ACONTb"
]
},
"annotation":{
"bigg.reaction":[
"ACONTb"
],
"ec-code":[
"4.2.1.3"
],
"kegg.reaction":[
"R01900"
],
"metanetx.reaction":[
"MNXR95387"
],
"rhea":[
"22145",
"22144",
"22146",
"22147"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01388"
]
}
},
{
"id":"EX_pta_e",
"name":"Pentanoate exchange",
"metabolites":{
"pta_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0349218313975909,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pta_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pta_e"
],
"metanetx.reaction":[
"MNXR103320"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ACOTA",
"name":"Acetylornithine transaminase",
"metabolites":{
"acg5sa_c":1.0,
"acorn_c":-1.0,
"akg_c":-1.0,
"glu__L_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0204",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOTA"
]
},
"annotation":{
"bigg.reaction":[
"ACOTA"
],
"biocyc":[
"META:ACETYLORNTRANSAM-RXN"
],
"ec-code":[
"2.6.1.11"
],
"kegg.reaction":[
"R02283"
],
"metanetx.reaction":[
"MNXR95388"
],
"rhea":[
"18051",
"18050",
"18052",
"18049"
],
"sabiork":[
"2248"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01637"
]
}
},
{
"id":"AACPS2",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C14:1)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"tdeACP_c":1.0,
"ttdcea_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS2"
]
},
"annotation":{
"bigg.reaction":[
"AACPS2"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95141"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AACPS3",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C16:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdca_c":-1.0,
"palmACP_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS3"
]
},
"annotation":{
"bigg.reaction":[
"AACPS3"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95142"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACPPAT120",
"name":"Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0)",
"metabolites":{
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"ddcap_c":1.0,
"h_c":-1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1598",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACPPAT120"
]
},
"annotation":{
"bigg.reaction":[
"ACPPAT120"
],
"metanetx.reaction":[
"MNXR95395"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AACPS4",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C16:1)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdcea_c":-1.0,
"hdeACP_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS4"
]
},
"annotation":{
"bigg.reaction":[
"AACPS4"
],
"metanetx.reaction":[
"MNXR95143"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACPPAT140",
"name":"Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0)",
"metabolites":{
"ACP_c":1.0,
"h_c":-1.0,
"myrsACP_c":-1.0,
"pi_c":-1.0,
"ttdcap_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1598",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACPPAT140"
]
},
"annotation":{
"bigg.reaction":[
"ACPPAT140"
],
"metanetx.reaction":[
"MNXR95396"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_pyr_e",
"name":"Pyruvate exchange",
"metabolites":{
"pyr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0164725619799958,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pyr_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pyr_e"
],
"biocyc":[
"META:TRANS-RXN0-506",
"META:TRANS-RXN0-570"
],
"metanetx.reaction":[
"MNXR103384"
],
"sabiork":[
"12168"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10929",
"rxn09218"
]
}
},
{
"id":"ACPPAT141",
"name":"Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1)",
"metabolites":{
"ACP_c":1.0,
"h_c":-1.0,
"pi_c":-1.0,
"tdeACP_c":-1.0,
"ttdceap_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1598",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACPPAT141"
]
},
"annotation":{
"bigg.reaction":[
"ACPPAT141"
],
"metanetx.reaction":[
"MNXR95397"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACPPAT160",
"name":"Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0)",
"metabolites":{
"ACP_c":1.0,
"h_c":-1.0,
"hdcap_c":1.0,
"palmACP_c":-1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1598",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACPPAT160"
]
},
"annotation":{
"bigg.reaction":[
"ACPPAT160"
],
"metanetx.reaction":[
"MNXR95398"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AACPS5",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C18:1)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdcea_c":-1.0,
"octeACP_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS5"
]
},
"annotation":{
"bigg.reaction":[
"AACPS5"
],
"metanetx.reaction":[
"MNXR95144"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AACPS6",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C18:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdcaACP_c":1.0,
"ocdca_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1613 or Gmet_0086",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS6"
]
},
"annotation":{
"bigg.reaction":[
"AACPS6"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95145"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACPPAT161",
"name":"Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1)",
"metabolites":{
"ACP_c":1.0,
"h_c":-1.0,
"hdceap_c":1.0,
"hdeACP_c":-1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1598",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACPPAT161"
]
},
"annotation":{
"bigg.reaction":[
"ACPPAT161"
],
"metanetx.reaction":[
"MNXR95399"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACPPAT180",
"name":"Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0)",
"metabolites":{
"ACP_c":1.0,
"h_c":-1.0,
"ocdcaACP_c":-1.0,
"ocdcap_c":1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1598",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACPPAT180"
]
},
"annotation":{
"bigg.reaction":[
"ACPPAT180"
],
"metanetx.reaction":[
"MNXR95400"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AACPS7",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C12:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ddcaACP_c":1.0,
"ddca_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1613 or Gmet_0086",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS7"
]
},
"annotation":{
"bigg.reaction":[
"AACPS7"
],
"ec-code":[
"6.2.1.l"
],
"metanetx.reaction":[
"MNXR95146"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_so3_e",
"name":"Sulfite exchange",
"metabolites":{
"so3_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_so3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_so3_e"
],
"metanetx.reaction":[
"MNXR104460"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12453",
"rxn09260"
]
}
},
{
"id":"AACPS8",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C10:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"dcaACP_c":1.0,
"dca_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1613 or Gmet_0086",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS8"
]
},
"annotation":{
"bigg.reaction":[
"AACPS8"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95147"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AACPS9",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C8:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocACP_c":1.0,
"octa_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1613 or Gmet_0086",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS9"
]
},
"annotation":{
"bigg.reaction":[
"AACPS9"
],
"ec-code":[
"6.2.1.l"
],
"metanetx.reaction":[
"MNXR95148"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACPPAT181",
"name":"Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1)",
"metabolites":{
"ACP_c":1.0,
"h_c":-1.0,
"ocdceap_c":1.0,
"octeACP_c":-1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1598",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACPPAT181"
]
},
"annotation":{
"bigg.reaction":[
"ACPPAT181"
],
"metanetx.reaction":[
"MNXR95401"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_so4_e",
"name":"Sulfate exchange",
"metabolites":{
"so4_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_so4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_so4_e"
],
"metanetx.reaction":[
"MNXR104469"
],
"reactome.reaction":[
"R-TGU-8875871",
"R-DRE-8875871",
"R-GGA-8875871",
"R-BTA-8875871",
"R-SCE-8875871",
"R-HSA-8875871",
"R-SPO-8875871",
"R-XTR-8875871",
"R-MMU-8875871",
"R-RNO-8875871",
"R-SSC-8875871",
"R-PFA-8875871",
"R-ATH-8875871",
"R-CFA-8875871",
"R-OSA-8875871",
"R-DME-8875871"
],
"rhea":[
"34983",
"34984",
"34986",
"34985"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09261",
"rxn05238"
]
}
},
{
"id":"ACACT1r",
"name":"Acetyl-CoA C-acetyltransferase",
"metabolites":{
"aacoa_c":1.0,
"accoa_c":-2.0,
"coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2213 or Gmet_1719 or Gmet_0144 or Gmet_2197 or Gmet_2268 or Gmet_2074 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACACT1r"
]
},
"annotation":{
"bigg.reaction":[
"ACACT1r"
],
"biocyc":[
"META:ACETYL-COA-ACETYLTRANSFER-RXN"
],
"ec-code":[
"2.3.1.9"
],
"kegg.reaction":[
"R00238"
],
"metanetx.reaction":[
"MNXR95194"
],
"reactome.reaction":[
"R-CFA-74181",
"R-XTR-8848215",
"R-ATH-73916",
"R-RNO-74181",
"R-BTA-8848215",
"R-DDI-74181",
"R-SPO-74181",
"R-SSC-73916",
"R-CEL-74181",
"R-SPO-73916",
"R-DRE-74181",
"R-MMU-73916",
"R-TGU-74181",
"R-BTA-73916",
"R-DME-74181",
"R-PFA-73916",
"R-DME-73916",
"R-HSA-8848215",
"R-TGU-73916",
"R-SSC-8848215",
"R-OSA-73916",
"R-SSC-74181",
"R-BTA-74181",
"R-CFA-73916",
"R-GGA-74181",
"R-MMU-74181",
"R-PFA-74181",
"R-SCE-8848215",
"R-XTR-73916",
"R-GGA-8848215",
"R-HSA-74181",
"R-RNO-8848215",
"R-DRE-73916",
"R-SCE-74181",
"R-MMU-8848215",
"R-RNO-73916",
"R-HSA-73916",
"R-DME-8848215",
"R-ATH-74181",
"R-GGA-73916",
"R-CFA-8848215",
"R-DDI-73916",
"R-SCE-73916",
"R-OSA-74181",
"R-TGU-8848215",
"R-XTR-74181",
"R-DRE-8848215",
"R-CEL-73916"
],
"rhea":[
"21038",
"21037",
"21039",
"21036"
],
"sabiork":[
"531"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00178"
]
}
},
{
"id":"ACACT2r",
"name":"Acetyl-CoA C-acyltransferase (butanoyl-CoA) (r)",
"metabolites":{
"3ohcoa_c":1.0,
"accoa_c":-1.0,
"btcoa_c":-1.0,
"coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2074 or Gmet_0144 or Gmet_2197 or Gmet_2213 or Gmet_2268 or Gmet_1719 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACACT2r"
]
},
"annotation":{
"bigg.reaction":[
"ACACT2r"
],
"biocyc":[
"META:RXN-12565"
],
"ec-code":[
"2.3.1.9",
"2.3.1.16"
],
"kegg.reaction":[
"R01177"
],
"metanetx.reaction":[
"MNXR95196"
],
"reactome.reaction":[
"R-CEL-77321",
"R-BTA-77321",
"R-MMU-77321",
"R-SSC-77321",
"R-TGU-77321",
"R-RNO-77321",
"R-DME-77321",
"R-HSA-77321",
"R-CFA-77321",
"R-GGA-77321",
"R-XTR-77321"
],
"rhea":[
"31114",
"31113",
"31111",
"31112"
],
"sabiork":[
"1414"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00874"
]
}
},
{
"id":"EX_sulfac_e",
"name":"Sulfoacetate exchange",
"metabolites":{
"sulfac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_sulfac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_sulfac_e"
],
"metanetx.reaction":[
"MNXR104646"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09278"
]
}
},
{
"id":"ACACT3r",
"name":"Acetyl-CoA C-acyltransferase (hexanoyl-CoA) (r)",
"metabolites":{
"3oocoa_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"hxcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2074 or Gmet_0144 or Gmet_2197 or Gmet_2213 or Gmet_2268 or Gmet_1719 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACACT3r"
]
},
"annotation":{
"bigg.reaction":[
"ACACT3r"
],
"ec-code":[
"2.3.1.9"
],
"metanetx.reaction":[
"MNXR95197"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_taur_e",
"name":"Taurine exchange",
"metabolites":{
"taur_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_taur_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_taur_e"
],
"metanetx.reaction":[
"MNXR104733"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09286",
"rxn13402"
]
}
},
{
"id":"ACACT4r",
"name":"Acetyl-CoA C-acyltransferase (octanoyl-CoA) (r)",
"metabolites":{
"3odcoa_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"occoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2074 or Gmet_0144 or Gmet_2197 or Gmet_2213 or Gmet_2268 or Gmet_1719 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACACT4r"
]
},
"annotation":{
"bigg.reaction":[
"ACACT4r"
],
"biocyc":[
"META:RXN-13617"
],
"ec-code":[
"2.3.1.9",
"2.3.1.16"
],
"kegg.reaction":[
"R03778"
],
"metanetx.reaction":[
"MNXR95198"
],
"reactome.reaction":[
"R-BTA-77340",
"R-CEL-77340",
"R-HSA-77340",
"R-MMU-77340",
"R-GGA-77340",
"R-CFA-77340",
"R-SSC-77340",
"R-XTR-77340",
"R-RNO-77340",
"R-TGU-77340",
"R-DME-77340"
],
"rhea":[
"31087",
"31089",
"31088",
"31090"
],
"sabiork":[
"3537"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02680"
]
}
},
{
"id":"ACACT5r",
"name":"Acetyl-CoA C-acyltransferase (decanoyl-CoA) (r)",
"metabolites":{
"3oddcoa_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"dcacoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2074 or Gmet_0144 or Gmet_2197 or Gmet_2213 or Gmet_2268 or Gmet_1719 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACACT5r"
]
},
"annotation":{
"bigg.reaction":[
"ACACT5r"
],
"ec-code":[
"2.3.1.9"
],
"metanetx.reaction":[
"MNXR95199"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACACT6r",
"name":"Acetyl-CoA C-acyltransferase (dodecanoyl-CoA) (r)",
"metabolites":{
"3otdcoa_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"ddcacoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2074 or Gmet_0144 or Gmet_2197 or Gmet_2213 or Gmet_2268 or Gmet_1719 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACACT6r"
]
},
"annotation":{
"bigg.reaction":[
"ACACT6r"
],
"biocyc":[
"META:RXN-14268"
],
"ec-code":[
"2.3.1.9",
"2.3.1.16"
],
"kegg.reaction":[
"R03858"
],
"metanetx.reaction":[
"MNXR95201"
],
"reactome.reaction":[
"R-MMU-77271",
"R-GGA-77271",
"R-BTA-77271",
"R-SSC-77271",
"R-CFA-77271",
"R-XTR-77271",
"R-RNO-77271",
"R-DME-77271",
"R-TGU-77271",
"R-CEL-77271",
"R-HSA-77271"
],
"rhea":[
"31093",
"31094",
"31092",
"31091"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06510"
]
}
},
{
"id":"ACACT7r",
"name":"Acetyl-CoA C-acyltransferase (tetradecanoyl-CoA) (r)",
"metabolites":{
"3ohdcoa_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"tdcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2074 or Gmet_0144 or Gmet_2197 or Gmet_2213 or Gmet_2268 or Gmet_1719 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACACT7r"
]
},
"annotation":{
"bigg.reaction":[
"ACACT7r"
],
"biocyc":[
"META:2.3.1.155-RXN",
"META:RXN-16560"
],
"ec-code":[
"2.3.1.9",
"2.3.1.16",
"2.3.1.155"
],
"kegg.reaction":[
"R03991"
],
"metanetx.reaction":[
"MNXR95203"
],
"reactome.reaction":[
"R-CFA-77304",
"R-SSC-77304",
"R-DME-77304",
"R-HSA-77304",
"R-GGA-77304",
"R-MMU-77304",
"R-TGU-77304",
"R-XTR-77304",
"R-BTA-77304",
"R-CEL-77304",
"R-RNO-77304"
],
"rhea":[
"18163",
"18164",
"18162",
"18161"
],
"sabiork":[
"3726"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02804"
]
}
},
{
"id":"ACACT8r",
"name":"Acetyl-CoA acyltransferase (hexadecanoyl-CoA), (r)",
"metabolites":{
"3ohodcoa_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"pmtcoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2074 or Gmet_0144 or Gmet_2197 or Gmet_2213 or Gmet_2268 or Gmet_1719 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACACT8r"
]
},
"annotation":{
"bigg.reaction":[
"ACACT8r"
],
"metanetx.reaction":[
"MNXR95204"
],
"rhea":[
"35282",
"35280",
"35279",
"35281"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08767"
]
}
},
{
"id":"EX_tc4_e",
"name":"Technetium(IV) exchange",
"metabolites":{
"tc4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tc4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tc4_e"
],
"metanetx.reaction":[
"MNXR143075"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ACAFDOR",
"name":"Acetaldehyde:ferredoxin oxidoreductase",
"metabolites":{
"ac_c":1.0,
"acald_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h2o_c":-1.0,
"h_c":3.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1045",
"objective_coefficient":-0.0181198181779953,
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ACAFDOR"
]
},
"annotation":{
"bigg.reaction":[
"ACAFDOR"
],
"metanetx.reaction":[
"MNXR95209"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_tc7_e",
"name":"Technetium(VII) exchange",
"metabolites":{
"tc7_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tc7_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tc7_e"
],
"metanetx.reaction":[
"MNXR143076"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ACBIPGT",
"name":"Adenosyl cobinamide phosphate guanyltransferase",
"metabolites":{
"adocbip_c":-1.0,
"agdpcbi_c":1.0,
"gtp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0466",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACBIPGT"
]
},
"annotation":{
"bigg.reaction":[
"ACBIPGT"
],
"biocyc":[
"META:COBINPGUANYLYLTRANS-RXN"
],
"ec-code":[
"2.7.7.62"
],
"kegg.reaction":[
"R05222"
],
"metanetx.reaction":[
"MNXR95216"
],
"rhea":[
"22712",
"22715",
"22713",
"22714"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03537"
]
}
},
{
"id":"ACCOAC",
"name":"Acetyl-CoA carboxylase",
"metabolites":{
"accoa_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"hco3_c":-1.0,
"malcoa_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1216 and Gmet_2476) and Gmet_0983 and Gmet_0984",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACCOAC"
]
},
"annotation":{
"bigg.reaction":[
"ACCOAC"
],
"biocyc":[
"META:ACETYL-COA-CARBOXYLTRANSFER-RXN"
],
"ec-code":[
"6.4.1.2"
],
"kegg.reaction":[
"R00742"
],
"metanetx.reaction":[
"MNXR95219"
],
"reactome.reaction":[
"R-PFA-200555",
"R-SPO-75851",
"R-DRE-8876889",
"R-CFA-200555",
"R-DME-75851",
"R-HSA-75851",
"R-HSA-8876889",
"R-BTA-200555",
"R-BTA-8876889",
"R-DRE-75851",
"R-XTR-200555",
"R-SSC-8876889",
"R-CFA-8876889",
"R-MMU-200555",
"R-DRE-200555",
"R-MMU-8876889",
"R-RNO-200555",
"R-SPO-8876889",
"R-RNO-75851",
"R-PFA-75851",
"R-CEL-8876889",
"R-SCE-200555",
"R-TGU-8876889",
"R-GGA-200555",
"R-GGA-8876889",
"R-SCE-8876889",
"R-ATH-75851",
"R-SPO-200555",
"R-SSC-200555",
"R-DME-8876889",
"R-DDI-200555",
"R-ATH-200555",
"R-RNO-8876889",
"R-DME-200555",
"R-XTR-8876889",
"R-MMU-75851",
"R-DDI-8876889",
"R-CFA-75851",
"R-DDI-75851",
"R-PFA-8876889",
"R-CEL-200555",
"R-CEL-75851",
"R-HSA-200555",
"R-TGU-75851",
"R-BTA-75851",
"R-TGU-200555",
"R-ATH-8876889",
"R-SCE-75851",
"R-SSC-75851",
"R-GGA-75851",
"R-XTR-75851"
],
"rhea":[
"11308",
"11311",
"11310",
"11309"
],
"sabiork":[
"542"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00533"
]
}
},
{
"id":"EX_tol_e",
"name":"EX tol LPAREN e RPAREN ",
"metabolites":{
"tol_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0375574413143905,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tol_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tol_e"
],
"metanetx.reaction":[
"MNXR104917"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12814",
"rxn12815"
]
}
},
{
"id":"ACGAMK",
"name":"N-acetylglucosamine kinase",
"metabolites":{
"acgam6p_c":1.0,
"acgam_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"ACGAMK"
]
},
"annotation":{
"bigg.reaction":[
"ACGAMK"
],
"biocyc":[
"META:N-ACETYLGLUCOSAMINE-KINASE-RXN"
],
"ec-code":[
"2.7.1.59"
],
"kegg.reaction":[
"R01201"
],
"metanetx.reaction":[
"MNXR95249"
],
"rhea":[
"17420",
"17418",
"17419",
"17417"
],
"sabiork":[
"1435"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00892"
]
}
},
{
"id":"EX_tsul_e",
"name":"Thiosulfate exchange",
"metabolites":{
"tsul_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tsul_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tsul_e"
],
"metanetx.reaction":[
"MNXR104966"
],
"rhea":[
"32808",
"32810",
"32807",
"32809"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09330"
]
}
},
{
"id":"ACGAMT",
"name":"UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase",
"metabolites":{
"uacgam_c":-1.0,
"udcpp_c":-1.0,
"ump_c":1.0,
"unaga_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1505 or Gmet_2161",
"objective_coefficient":-0.857232125438988,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACGAMT"
]
},
"annotation":{
"bigg.reaction":[
"ACGAMT"
],
"metanetx.reaction":[
"MNXR95251"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08040"
]
}
},
{
"id":"ACGK",
"name":"Acetylglutamate kinase",
"metabolites":{
"acg5p_c":1.0,
"acglu_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0203",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ACGK"
]
},
"annotation":{
"bigg.reaction":[
"ACGK"
],
"biocyc":[
"META:ACETYLGLUTKIN-RXN"
],
"ec-code":[
"2.7.2.8"
],
"kegg.reaction":[
"R02649"
],
"metanetx.reaction":[
"MNXR95256"
],
"rhea":[
"14632",
"14631",
"14630",
"14629"
],
"sabiork":[
"2545"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01917"
]
}
},
{
"id":"ACGS",
"name":"N-acetylglutamate synthase",
"metabolites":{
"accoa_c":-1.0,
"acglu_c":1.0,
"coa_c":1.0,
"glu__L_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0946",
"objective_coefficient":-0.0560067107319858,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ACGS"
]
},
"annotation":{
"bigg.reaction":[
"ACGS"
],
"biocyc":[
"META:N-ACETYLTRANSFER-RXN"
],
"ec-code":[
"2.3.1.1"
],
"kegg.reaction":[
"R00259"
],
"metanetx.reaction":[
"MNXR95259"
],
"reactome.reaction":[
"R-HSA-70542",
"R-SPO-70542",
"R-XTR-70542",
"R-SSC-70542",
"R-DRE-70542",
"R-DDI-70542",
"R-MMU-70542",
"R-SCE-70542",
"R-BTA-70542",
"R-CFA-70542",
"R-RNO-70542"
],
"rhea":[
"24295",
"24292",
"24293",
"24294"
],
"sabiork":[
"764"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00192"
]
}
},
{
"id":"ACHBS",
"name":"2-aceto-2-hydroxybutanoate synthase",
"metabolites":{
"2ahbut_c":1.0,
"2obut_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1260 and Gmet_1261",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ACHBS"
]
},
"annotation":{
"bigg.reaction":[
"ACHBS"
],
"biocyc":[
"META:ACETOOHBUTSYN-RXN"
],
"ec-code":[
"2.2.1.6"
],
"kegg.reaction":[
"R08648"
],
"metanetx.reaction":[
"MNXR95260"
],
"rhea":[
"27657",
"27655",
"27654",
"27656"
],
"sabiork":[
"6688"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACPS",
"name":"Acyl Carrier Protein Synthase",
"metabolites":{
"coa_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pan4p_c":1.0,
"pap_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0068",
"objective_coefficient":-0.0131780495839969,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACPS"
]
},
"annotation":{
"bigg.reaction":[
"ACPS"
],
"biocyc":[
"META:RXN-10811"
],
"ec-code":[
"3.6.1.-",
"3"
],
"kegg.reaction":[
"R10747"
],
"metanetx.reaction":[
"MNXR95402"
],
"reactome.reaction":[
"R-TGU-6809354",
"R-MMU-6809354",
"R-HSA-6809354",
"R-CEL-6809354",
"R-XTR-6809354",
"R-SSC-6809354",
"R-RNO-6809354",
"R-DRE-6809354",
"R-BTA-6809354",
"R-HSA-8938314",
"R-ATH-6809354",
"R-GGA-6809354",
"R-OSA-6809354",
"R-CFA-6809354"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09532"
]
}
},
{
"id":"ACPS1",
"name":"Acyl-carrier protein synthase",
"metabolites":{
"ACP_c":1.0,
"apoACP_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"pap_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1884",
"objective_coefficient":-0.304083494150726,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACPS1"
]
},
"annotation":{
"bigg.reaction":[
"ACPS1"
],
"ec-code":[
"2.7.8.7"
],
"metanetx.reaction":[
"MNXR95403"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06023"
]
}
},
{
"id":"ACITL",
"name":"ATP-Citrate lyase",
"metabolites":{
"accoa_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"cit_c":-1.0,
"coa_c":-1.0,
"oaa_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0305 and Gmet_0306",
"objective_coefficient":-0.00658902479199849,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ACITL"
]
},
"annotation":{
"bigg.reaction":[
"ACITL"
],
"biocyc":[
"META:ATP-CITRATE-PRO-S--LYASE-RXN"
],
"ec-code":[
"4.1.3.6",
"2.3.3.8"
],
"kegg.reaction":[
"R00352"
],
"metanetx.reaction":[
"MNXR95268"
],
"reactome.reaction":[
"R-CEL-75848",
"R-SCE-75848",
"R-DME-75848",
"R-SSC-75848",
"R-TGU-75848",
"R-HSA-75848",
"R-DRE-75848",
"R-DDI-75848",
"R-CFA-75848",
"R-OSA-75848",
"R-BTA-75848",
"R-MMU-75848",
"R-XTR-75848",
"R-GGA-75848",
"R-SPO-75848",
"R-ATH-75848",
"R-RNO-75848"
],
"rhea":[
"21163",
"21160",
"21161",
"21162"
],
"sabiork":[
"266"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00257"
]
}
},
{
"id":"EX_ttdca_e",
"name":"Tetradecanoate (n-C14:0) exchange",
"metabolites":{
"ttdca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.128485983443968,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ttdca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ttdca_e"
],
"metanetx.reaction":[
"MNXR99092"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ACKr",
"name":"Acetate kinase",
"metabolites":{
"ac_c":-1.0,
"actp_c":1.0,
"adp_c":1.0,
"atp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1034",
"objective_coefficient":-3.05311331771918e-16,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ACKr"
]
},
"annotation":{
"bigg.reaction":[
"ACKr"
],
"biocyc":[
"META:ACETATEKIN-RXN"
],
"ec-code":[
"2.7.2.15",
"2.7.2.1"
],
"kegg.reaction":[
"R00315"
],
"metanetx.reaction":[
"MNXR95269"
],
"rhea":[
"11354",
"11355",
"11353",
"11352"
],
"sabiork":[
"71"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00225"
]
}
},
{
"id":"ACLS",
"name":"Acetolactate synthase",
"metabolites":{
"alac__S_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"pyr_c":-2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1260 and Gmet_1261",
"objective_coefficient":1.87350135405495e-16,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ACLS"
]
},
"annotation":{
"bigg.reaction":[
"ACLS"
],
"biocyc":[
"META:ACETOLACTSYN-RXN"
],
"ec-code":[
"2.2.1.6"
],
"kegg.reaction":[
"R00226"
],
"metanetx.reaction":[
"MNXR95271"
],
"rhea":[
"25252",
"25251",
"25249",
"25250"
],
"sabiork":[
"749"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACS",
"name":"Acetyl-CoA synthetase",
"metabolites":{
"ac_c":-1.0,
"accoa_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2340",
"objective_coefficient":-2.77555756156289e-16,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ACS"
]
},
"annotation":{
"bigg.reaction":[
"ACS"
],
"biocyc":[
"META:ACETATE--COA-LIGASE-RXN"
],
"ec-code":[
"6.2.1.1"
],
"kegg.reaction":[
"R00235"
],
"metanetx.reaction":[
"MNXR95413"
],
"reactome.reaction":[
"R-DME-71735",
"R-TGU-449911",
"R-BTA-8875071",
"R-CEL-71735",
"R-DRE-449911",
"R-CFA-71735",
"R-TGU-71735",
"R-SCE-71735",
"R-CFA-8875071",
"R-BTA-71735",
"R-SPO-449911",
"R-CFA-449911",
"R-MMU-8875071",
"R-GGA-8875071",
"R-OSA-71735",
"R-HSA-71735",
"R-HSA-449911",
"R-SSC-8875071",
"R-RNO-71735",
"R-SSC-449911",
"R-BTA-449911",
"R-GGA-71735",
"R-SSC-71735",
"R-XTR-449911",
"R-ATH-71735",
"R-DRE-71735",
"R-DME-8875071",
"R-DDI-8875071",
"R-XTR-8875071",
"R-PFA-449911",
"R-SCE-449911",
"R-SCE-8875071",
"R-DRE-8875071",
"R-MMU-71735",
"R-MMU-449911",
"R-XTR-71735",
"R-RNO-8875071",
"R-DDI-449911",
"R-TGU-8875071",
"R-HSA-8875071",
"R-GGA-449911",
"R-RNO-449911"
],
"rhea":[
"23179",
"23178",
"23176",
"23177"
],
"sabiork":[
"179"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00175"
]
}
},
{
"id":"EX_ttdcea_e",
"name":"Tetradecenoate (n-C14:1) exchange",
"metabolites":{
"ttdcea_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.124532568568769,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ttdcea_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ttdcea_e"
],
"metanetx.reaction":[
"MNXR99096"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ACS2",
"name":"Acetyl-CoA synthase (propionate)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ppa_c":-1.0,
"ppcoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2340",
"objective_coefficient":-2.77555756156289e-16,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ACS2"
]
},
"annotation":{
"bigg.reaction":[
"ACS2"
],
"ec-code":[
"6.2.1.17"
],
"metanetx.reaction":[
"MNXR95222"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACNPLYS",
"name":"N-Acetylneuraminate pyruvate-lyase",
"metabolites":{
"acmana_c":-1.0,
"acnam_c":1.0,
"h2o_c":-1.0,
"pep_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0455",
"objective_coefficient":-0.0250382942095938,
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACNPLYS"
]
},
"annotation":{
"bigg.reaction":[
"ACNPLYS"
],
"biocyc":[
"META:N-ACETYLNEURAMINATE-SYNTHASE-RXN"
],
"ec-code":[
"2.5.1.56"
],
"kegg.reaction":[
"R01804"
],
"metanetx.reaction":[
"MNXR95297"
],
"rhea":[
"19275",
"19273",
"19276",
"19274"
],
"sabiork":[
"1890"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01316"
]
}
},
{
"id":"EX_tungs_e",
"name":"Tungstate exchange",
"metabolites":{
"tungs_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tungs_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tungs_e"
],
"metanetx.reaction":[
"MNXR104979"
],
"rhea":[
"32842",
"32841",
"32840",
"32839"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09334"
]
}
},
{
"id":"ACOAD1f",
"name":"Acyl-CoA dehydrogenase (butanoyl-CoA)",
"metabolites":{
"b2coa_c":1.0,
"btcoa_c":-1.0,
"fad_c":-1.0,
"fadh2_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_1710 or Gmet_3306 or Gmet_3307 or Gmet_2198 or Gmet_2270 or Gmet_2211",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD1f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD1f"
],
"ec-code":[
"1.3.99.3",
"1.3.8.1",
"1.3.99.-",
"1.3.3.6",
"1.3.8.7"
],
"kegg.reaction":[
"R01175"
],
"metanetx.reaction":[
"MNXR95302"
],
"reactome.reaction":[
"R-BTA-77319",
"R-RNO-77319",
"R-DRE-77319",
"R-GGA-77319",
"R-CFA-77319",
"R-TGU-77319",
"R-DME-77319",
"R-MMU-77319",
"R-XTR-77319",
"R-HSA-77319",
"R-SSC-77319"
],
"rhea":[
"24006",
"30733",
"24007",
"30734",
"24005",
"24004",
"30731",
"30732"
],
"sabiork":[
"1412"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00872"
]
}
},
{
"id":"ACOAD2f",
"name":"Acyl-CoA dehydrogenase (hexanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"hx2coa_c":1.0,
"hxcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_1710 or Gmet_3306 or Gmet_3307 or Gmet_2198 or Gmet_2270 or Gmet_2211",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD2f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD2f"
],
"ec-code":[
"1.3.99.3"
],
"metanetx.reaction":[
"MNXR95303"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACOAD3f",
"name":"Acyl-CoA dehydrogenase (octanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"oc2coa_c":1.0,
"occoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_1710 or Gmet_3306 or Gmet_3307 or Gmet_2198 or Gmet_2270 or Gmet_2211",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD3f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD3f"
],
"ec-code":[
"1.3.99.3",
"1.3.99.-",
"1.3.3.6",
"1.3.8.8",
"1.3.8.7"
],
"kegg.reaction":[
"R03777"
],
"metanetx.reaction":[
"MNXR95304"
],
"reactome.reaction":[
"R-CFA-77338",
"R-SSC-77338",
"R-XTR-77338",
"R-MMU-77338",
"R-HSA-77338",
"R-DME-77338",
"R-BTA-77338",
"R-CEL-77338",
"R-DRE-77338",
"R-RNO-77338",
"R-TGU-77338"
],
"rhea":[
"48182",
"30945",
"30944",
"48183",
"48181",
"48180",
"30943",
"30946"
],
"sabiork":[
"3536"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02679"
]
}
},
{
"id":"ACOAD4f",
"name":"Acyl-CoA dehydrogenase (decanoyl-CoA)",
"metabolites":{
"dc2coa_c":1.0,
"dcacoa_c":-1.0,
"fad_c":-1.0,
"fadh2_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_1710 or Gmet_3306 or Gmet_3307 or Gmet_2198 or Gmet_2270 or Gmet_2211",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD4f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD4f"
],
"ec-code":[
"1.3.99.3"
],
"metanetx.reaction":[
"MNXR95298"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACt2ipp",
"name":"Acetate transport out via proton symport (periplasm)",
"metabolites":{
"ac_c":-1.0,
"ac_p":1.0,
"h_c":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACt2ipp"
]
},
"annotation":{
"bigg.reaction":[
"ACt2ipp"
],
"biocyc":[
"META:TRANS-RXN0-571"
],
"metanetx.reaction":[
"MNXR95429"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08061",
"rxn05488"
]
}
},
{
"id":"ACt2rpp",
"name":"Acetate reversible transport via proton symport (periplasm)",
"metabolites":{
"ac_c":1.0,
"ac_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACt2pp"
]
},
"annotation":{
"bigg.reaction":[
"ACt2rpp"
],
"biocyc":[
"META:TRANS-RXN0-571"
],
"metanetx.reaction":[
"MNXR95429"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08061",
"rxn05488"
]
}
},
{
"id":"ACt4pp",
"name":"Na+/Acetate symport (periplasm)",
"metabolites":{
"ac_c":1.0,
"ac_p":-1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"objective_coefficient":-0.00197670743759953,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACt4pp"
]
},
"annotation":{
"bigg.reaction":[
"ACt4pp"
],
"metanetx.reaction":[
"MNXR95430"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08062"
]
}
},
{
"id":"ACtex",
"name":"Acetate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ac_e":-1.0,
"ac_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"ACtex"
]
},
"annotation":{
"bigg.reaction":[
"ACtex"
],
"biocyc":[
"META:RXN0-1981",
"META:TRANS-RXN0-567"
],
"metanetx.reaction":[
"MNXR95431"
],
"rhea":[
"27817",
"27814",
"27816",
"27815"
],
"sabiork":[
"12184"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09787",
"rxn09866",
"rxn10904",
"rxn08063"
]
}
},
{
"id":"ADCL",
"name":"4-aminobenzoate synthase",
"metabolites":{
"4abz_c":1.0,
"4adcho_c":-1.0,
"h_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3010",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ADCL"
]
},
"annotation":{
"bigg.reaction":[
"ADCL"
],
"biocyc":[
"META:ADCLY-RXN"
],
"ec-code":[
"4.1.3.38"
],
"kegg.reaction":[
"R05553"
],
"metanetx.reaction":[
"MNXR95436"
],
"rhea":[
"16201",
"16203",
"16204",
"16202"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03841"
]
}
},
{
"id":"ADCPS1",
"name":"Adenosylcobinamide-phosphate synthase",
"metabolites":{
"adcobhex_c":-1.0,
"adocbi_c":1.0,
"adp_c":1.0,
"appl_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0486",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADCPS1"
]
},
"annotation":{
"bigg.reaction":[
"ADCPS1"
],
"biocyc":[
"META:6.3.1.10-RXN"
],
"ec-code":[
"6.3.1.10"
],
"kegg.reaction":[
"R07302"
],
"metanetx.reaction":[
"MNXR95438"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05054"
]
}
},
{
"id":"ADCPS2",
"name":"Adenosylcobinamide-phosphate synthase",
"metabolites":{
"adcobhex_c":-1.0,
"adocbip_c":1.0,
"adp_c":1.0,
"applp_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0486",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADCPS2"
]
},
"annotation":{
"bigg.reaction":[
"ADCPS2"
],
"biocyc":[
"META:RXN-6261"
],
"ec-code":[
"6.3.1.10"
],
"kegg.reaction":[
"R06529"
],
"metanetx.reaction":[
"MNXR95439"
],
"rhea":[
"21896",
"21898",
"21899",
"21897"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04384"
]
}
},
{
"id":"ACOAD5f",
"name":"Acyl-CoA dehydrogenase (dodecanoyl-CoA)",
"metabolites":{
"dd2coa_c":1.0,
"ddcacoa_c":-1.0,
"fad_c":-1.0,
"fadh2_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_1710 or Gmet_3306 or Gmet_3307 or Gmet_2198 or Gmet_2270 or Gmet_2211",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD5f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD5f"
],
"ec-code":[
"1.3.99.3",
"1.3.99.-",
"1.3.3.6",
"1.3.8.8",
"1.3.8.7"
],
"kegg.reaction":[
"R03857"
],
"metanetx.reaction":[
"MNXR95299"
],
"reactome.reaction":[
"R-RNO-77263",
"R-BTA-77263",
"R-MMU-77263",
"R-XTR-77263",
"R-HSA-77263",
"R-GGA-77263",
"R-DRE-77263",
"R-TGU-77263",
"R-SSC-77263",
"R-CFA-77263"
],
"rhea":[
"47298",
"47296",
"31040",
"47297",
"31042",
"31039",
"47299",
"31041"
],
"sabiork":[
"3607"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02720"
]
}
},
{
"id":"ACOAD6f",
"name":"Acyl-CoA dehydrogenase (tetradecanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"td2coa_c":1.0,
"tdcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_1710 or Gmet_3306 or Gmet_3307 or Gmet_2198 or Gmet_2270 or Gmet_2211",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD6f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD6f"
],
"ec-code":[
"1.3.99.3",
"1.3.8.9",
"1.3.99.-",
"1.3.3.6",
"1.3.8.8",
"1.3.8.7"
],
"kegg.reaction":[
"R03990"
],
"metanetx.reaction":[
"MNXR95300"
],
"reactome.reaction":[
"R-MMU-77274",
"R-SSC-77274",
"R-DRE-77274",
"R-GGA-77274",
"R-RNO-77274",
"R-XTR-77274",
"R-TGU-77274",
"R-CFA-77274",
"R-HSA-77274",
"R-BTA-77274"
],
"rhea":[
"28361",
"28358",
"28359",
"47319",
"47318",
"47316",
"47317",
"28360"
],
"sabiork":[
"3725"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02803"
]
}
},
{
"id":"ACOAD7f",
"name":"Acyl-CoA dehydrogenase (hexadecanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"hdd2coa_c":1.0,
"pmtcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_1710 or Gmet_3306 or Gmet_3307 or Gmet_2198 or Gmet_2270 or Gmet_2211",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD7f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD7f"
],
"ec-code":[
"1.3.99.3",
"1.3.8.9",
"1.3.99.-",
"1.3.3.6",
"1.3.8.8",
"1.3.8.7"
],
"kegg.reaction":[
"R01279"
],
"metanetx.reaction":[
"MNXR95301"
],
"rhea":[
"43449",
"30748",
"43448",
"30747",
"43451",
"30750",
"30749",
"43450"
],
"sabiork":[
"1495"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00946"
]
}
},
{
"id":"ADCS",
"name":"4-amino-4-deoxychorismate synthase",
"metabolites":{
"4adcho_c":1.0,
"chor_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3010",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ADCS"
]
},
"annotation":{
"bigg.reaction":[
"ADCS"
],
"biocyc":[
"META:PABASYN-RXN"
],
"ec-code":[
"2.6.1.85"
],
"kegg.reaction":[
"R01716"
],
"metanetx.reaction":[
"MNXR95440"
],
"rhea":[
"11672",
"11675",
"11673",
"11674"
],
"sabiork":[
"1828"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01257"
]
}
},
{
"id":"EX_u4_e",
"name":"Uranium(IV) exchange",
"metabolites":{
"u4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_u4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_u4_e"
],
"metanetx.reaction":[
"MNXR143082"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ACOAD8f",
"name":"Acyl-CoA dehydrogenase (octadecanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"od2coa_c":1.0,
"stcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_1710 or Gmet_3306 or Gmet_3307 or Gmet_2198 or Gmet_2270 or Gmet_2211",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD8f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD8f"
],
"metanetx.reaction":[
"MNXR95317"
],
"rhea":[
"40846",
"47240",
"40844",
"47243",
"40843",
"47242",
"40845",
"47241"
],
"sabiork":[
"11499"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08053"
]
}
},
{
"id":"ACOATA",
"name":"Acetyl-CoA ACP transacylase",
"metabolites":{
"ACP_c":-1.0,
"acACP_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACOATA"
]
},
"annotation":{
"bigg.reaction":[
"ACOATA"
],
"biocyc":[
"META:ACP-S-ACETYLTRANSFER-RXN"
],
"ec-code":[
"2.3.1.180",
"2.3.1.85",
"2.3.1.86",
"2.3.1.179",
"2.3.1.-",
"2.3.1.38",
"2.3.1.41"
],
"kegg.reaction":[
"R01624"
],
"metanetx.reaction":[
"MNXR95376"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05349"
]
}
},
{
"id":"EX_u6_e",
"name":"Uranium(VI) exchange",
"metabolites":{
"u6_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_u6_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_u6_e"
],
"metanetx.reaction":[
"MNXR143083"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ACONTa",
"name":"Aconitase (half-reaction A, Citrate hydro-lyase)",
"metabolites":{
"acon_C_c":1.0,
"cit_c":-1.0,
"h2o_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1016 or Gmet_1912 or Gmet_2763",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ACONTa"
]
},
"annotation":{
"bigg.reaction":[
"ACONTa"
],
"biocyc":[
"META:ACONITATEDEHYDR-RXN"
],
"ec-code":[
"4.2.1.3"
],
"kegg.reaction":[
"R01325"
],
"metanetx.reaction":[
"MNXR95386"
],
"rhea":[
"10230",
"10229",
"10231",
"10228"
],
"sabiork":[
"268"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00974"
]
}
},
{
"id":"EX_v4_e",
"name":"Vanadium(IV) exchange",
"metabolites":{
"v4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_v4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_v4_e"
],
"metanetx.reaction":[
"MNXR143087"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ADCYRS",
"name":"Adenosylcobyric acid synthase (glutamine-hydrolysing)",
"metabolites":{
"adcobdam_c":-1.0,
"adcobhex_c":1.0,
"adp_c":4.0,
"atp_c":-4.0,
"gln__L_c":-4.0,
"glu__L_c":4.0,
"h2o_c":-4.0,
"h_c":4.0,
"pi_c":4.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0485",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADCYRS"
]
},
"annotation":{
"bigg.reaction":[
"ADCYRS"
],
"ec-code":[
"6.3.5.10"
],
"metanetx.reaction":[
"MNXR95441"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03540"
]
}
},
{
"id":"ADD",
"name":"Adenine deaminase",
"metabolites":{
"ade_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"hxan_c":1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2201",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADD"
]
},
"annotation":{
"bigg.reaction":[
"ADD"
],
"biocyc":[
"META:ADENINE-DEAMINASE-RXN"
],
"ec-code":[
"3.5.4.2"
],
"kegg.reaction":[
"R01244"
],
"metanetx.reaction":[
"MNXR95443"
],
"rhea":[
"23690",
"23689",
"23688",
"23691"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00926"
]
}
},
{
"id":"ADK1",
"name":"Adenylate kinase",
"metabolites":{
"adp_c":2.0,
"amp_c":-1.0,
"atp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0647",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADK1"
]
},
"annotation":{
"bigg.reaction":[
"ADK1"
],
"biocyc":[
"META:ADENYL-KIN-RXN"
],
"ec-code":[
"2.7.4.3"
],
"kegg.reaction":[
"R00127"
],
"metanetx.reaction":[
"MNXR95450"
],
"reactome.reaction":[
"R-ATH-110145",
"R-SSC-110144",
"R-ATH-110144",
"R-SSC-110145",
"R-GGA-110145",
"R-PFA-110144",
"R-HSA-110145",
"R-RNO-110144",
"R-OSA-110145",
"R-SCE-110145",
"R-RNO-110145",
"R-XTR-110144",
"R-SCE-110144",
"R-PFA-110145",
"R-OSA-110144",
"R-HSA-110144",
"R-BTA-110144",
"R-DRE-110145",
"R-DRE-110144",
"R-SPO-110145",
"R-CEL-110144",
"R-CFA-110144",
"R-XTR-110145",
"R-MMU-110144",
"R-DME-110144",
"R-SPO-110144",
"R-DDI-110145",
"R-GGA-110144",
"R-TGU-110144",
"R-BTA-110145",
"R-CEL-110145",
"R-CFA-110145",
"R-DME-110145",
"R-TGU-110145",
"R-DDI-110144",
"R-MMU-110145"
],
"rhea":[
"12975",
"12973",
"12976",
"12974"
],
"sabiork":[
"82"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00097"
]
}
},
{
"id":"EX_v5_e",
"name":"Vanadium(V) exchange",
"metabolites":{
"v5_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_v5_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_v5_e"
],
"metanetx.reaction":[
"MNXR143088"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ALAD_L",
"name":"L-alanine dehydrogenase",
"metabolites":{
"ala__L_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"nh4_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1099",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ALAD_L"
]
},
"annotation":{
"bigg.reaction":[
"ALAD_L"
],
"biocyc":[
"META:ALANINE-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.4.1.1"
],
"kegg.reaction":[
"R00396"
],
"metanetx.reaction":[
"MNXR95687"
],
"rhea":[
"18405",
"18408",
"18406",
"18407"
],
"sabiork":[
"857"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00278"
]
}
},
{
"id":"EX_val__L_e",
"name":"L-Valine exchange",
"metabolites":{
"val__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0382163437935905,
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_val_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_val__L_e"
],
"biocyc":[
"META:TRANS-RXN0-269"
],
"metanetx.reaction":[
"MNXR105190"
],
"rhea":[
"29706",
"29703",
"29705",
"29704"
],
"sabiork":[
"13468"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05245",
"rxn09375"
]
}
},
{
"id":"ALAGLUE",
"name":"L-alanyl-gamma-glutamate epimerase",
"metabolites":{
"LalaDglu_c":-1.0,
"LalaLglu_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"ALAGLUE"
]
},
"annotation":{
"bigg.reaction":[
"ALAGLUE"
],
"biocyc":[
"META:RXN0-5228"
],
"ec-code":[
"5.1.1.20"
],
"kegg.reaction":[
"R10938"
],
"metanetx.reaction":[
"MNXR95690"
],
"rhea":[
"28394",
"28395",
"28396",
"28397"
],
"sabiork":[
"7810"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08100"
]
}
},
{
"id":"ALAR",
"name":"Alanine racemase",
"metabolites":{
"ala__D_c":1.0,
"ala__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2908",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ALAR"
]
},
"annotation":{
"bigg.reaction":[
"ALAR"
],
"biocyc":[
"META:ALARACECAT-RXN"
],
"ec-code":[
"5.1.1.1"
],
"kegg.reaction":[
"R00401"
],
"metanetx.reaction":[
"MNXR95693"
],
"rhea":[
"20252",
"20251",
"20249",
"20250"
],
"sabiork":[
"862"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00283"
]
}
},
{
"id":"ALATA_L",
"name":"L-alanine transaminase",
"metabolites":{
"akg_c":-1.0,
"ala__L_c":-1.0,
"glu__L_c":1.0,
"pyr_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3173",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ALATA_L"
]
},
"annotation":{
"bigg.reaction":[
"ALATA_L"
],
"biocyc":[
"META:ALANINE-AMINOTRANSFERASE-RXN",
"META:RXN-13698"
],
"ec-code":[
"2.6.1.2"
],
"kegg.reaction":[
"R00258"
],
"metanetx.reaction":[
"MNXR95698"
],
"reactome.reaction":[
"R-SPO-70523",
"R-DRE-507749",
"R-SSC-70524",
"R-SCE-507749",
"R-XTR-70524",
"R-SSC-507775",
"R-SPO-507749",
"R-RNO-507749",
"R-RNO-70523",
"R-DDI-70524",
"R-BTA-507749",
"R-RNO-507775",
"R-DDI-70523",
"R-SCE-507775",
"R-SPO-507775",
"R-CEL-70524",
"R-CFA-507775",
"R-HSA-70524",
"R-DME-507775",
"R-DDI-507749",
"R-CEL-70523",
"R-HSA-507749",
"R-OSA-70524",
"R-ATH-70524",
"R-SPO-70524",
"R-DME-70524",
"R-OSA-507775",
"R-SSC-70523",
"R-XTR-507775",
"R-DME-70523",
"R-SCE-70523",
"R-MMU-507775",
"R-BTA-70523",
"R-DDI-507775",
"R-CFA-507749",
"R-HSA-507775",
"R-OSA-507749",
"R-CFA-70523",
"R-ATH-507749",
"R-CFA-70524",
"R-TGU-507775",
"R-ATH-507775",
"R-BTA-70524",
"R-DRE-70523",
"R-XTR-507749",
"R-OSA-70523",
"R-DRE-70524",
"R-BTA-507775",
"R-DRE-507775",
"R-GGA-507775",
"R-HSA-70523",
"R-XTR-70523",
"R-MMU-70523",
"R-TGU-507749",
"R-MMU-507749",
"R-MMU-70524",
"R-ATH-70523",
"R-RNO-70524",
"R-CEL-507749",
"R-DME-507749",
"R-SCE-70524",
"R-SSC-507749",
"R-GGA-507749",
"R-CEL-507775"
],
"rhea":[
"19453",
"19455",
"19456",
"19454"
],
"sabiork":[
"763"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00191"
]
}
},
{
"id":"ALATRS",
"name":"Alanyl-tRNA synthetase",
"metabolites":{
"ala__L_c":-1.0,
"alatrna_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaala_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0201",
"objective_coefficient":-0.0289917090847928,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ALATRS"
]
},
"annotation":{
"bigg.reaction":[
"ALATRS"
],
"ec-code":[
"6.1.1.7"
],
"metanetx.reaction":[
"MNXR95701"
],
"reactome.reaction":[
"R-HSA-380177",
"R-HSA-379864"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11112"
]
}
},
{
"id":"ALCD1",
"name":"Alcohol dehydrogenase (methanol)",
"metabolites":{
"fald_c":1.0,
"h_c":1.0,
"meoh_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1053",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ALCD1"
]
},
"annotation":{
"bigg.reaction":[
"ALCD1"
],
"biocyc":[
"META:METHANOL-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.244"
],
"kegg.reaction":[
"R00605"
],
"metanetx.reaction":[
"MNXR95708"
],
"rhea":[
"19402",
"19401",
"19404",
"19403"
],
"sabiork":[
"997"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00430"
]
}
},
{
"id":"ALCD19",
"name":"Alcohol dehydrogenase (glycerol)",
"metabolites":{
"glyald_c":-1.0,
"glyc_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1046",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ALCD19"
]
},
"annotation":{
"bigg.reaction":[
"ALCD19"
],
"ec-code":[
"1.1.1.72",
"1.1.1.21"
],
"kegg.reaction":[
"R01036"
],
"metanetx.reaction":[
"MNXR95709"
],
"rhea":[
"30029",
"30027",
"30028",
"30030"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00763"
]
}
},
{
"id":"ALCD2x",
"name":"Alcohol dehydrogenase (ethanol)",
"metabolites":{
"acald_c":1.0,
"etoh_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1046 or Gmet_1053",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ALCD2x"
]
},
"annotation":{
"bigg.reaction":[
"ALCD2x"
],
"biocyc":[
"META:ALCOHOL-DEHYDROG-RXN"
],
"ec-code":[
"1.1.1.71",
"1.1.1.1"
],
"kegg.reaction":[
"R00754"
],
"metanetx.reaction":[
"MNXR95725"
],
"reactome.reaction":[
"R-MMU-71707",
"R-XTR-71707",
"R-CFA-71707",
"R-OSA-71707",
"R-RNO-71707",
"R-HSA-71707",
"R-SSC-71707",
"R-GGA-71707",
"R-SPO-71707",
"R-DME-71707",
"R-DRE-71707",
"R-BTA-71707",
"R-ATH-71707",
"R-SCE-71707",
"R-TGU-71707",
"R-CEL-71707",
"R-DDI-71707"
],
"rhea":[
"25292",
"25290",
"25291",
"25293"
],
"sabiork":[
"597"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00543"
]
}
},
{
"id":"ALCD3ir",
"name":"Alcohol dehydrogenase Propanal ",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"ppal_c":-1.0,
"ppoh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1046 or Gmet_1053",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ALCD3"
]
},
"annotation":{
"bigg.reaction":[
"ALCD3ir"
],
"biocyc":[
"META:RXN-13198"
],
"ec-code":[
"1.1.1.202",
"1.1.1.21",
"1.1.1.2",
"1.1.1.1",
"1.1.1.51"
],
"kegg.reaction":[
"R02377"
],
"metanetx.reaction":[
"MNXR95727"
],
"sabiork":[
"2321"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01710"
]
}
},
{
"id":"ALCD4",
"name":"Alcohol dehydrogenase (butanol)",
"metabolites":{
"btal_c":1.0,
"btoh_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1046 or Gmet_1053",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ALCD4"
]
},
"annotation":{
"bigg.reaction":[
"ALCD4"
],
"biocyc":[
"META:RXN-161"
],
"ec-code":[
"1.1.1",
"1.1.1.-"
],
"kegg.reaction":[
"R03544"
],
"metanetx.reaction":[
"MNXR95728"
],
"rhea":[
"33200",
"33202",
"33199",
"33201"
],
"sabiork":[
"3328"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02527"
]
}
},
{
"id":"ALDD2x",
"name":"Aldehyde dehydrogenase (acetaldehyde, NAD)",
"metabolites":{
"ac_c":1.0,
"acald_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0789",
"objective_coefficient":-0.0181198181779954,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ALDD2x"
]
},
"annotation":{
"bigg.reaction":[
"ALDD2x"
],
"biocyc":[
"META:RXN66-3"
],
"ec-code":[
"1.2.1.3",
"1.2.1.5"
],
"kegg.reaction":[
"R00710"
],
"metanetx.reaction":[
"MNXR95749"
],
"reactome.reaction":[
"R-HSA-71723",
"R-XTR-71691",
"R-DRE-71723",
"R-CEL-71691",
"R-MMU-71723",
"R-DME-71723",
"R-SSC-5696091",
"R-RNO-71691",
"R-BTA-71723",
"R-MMU-5696091",
"R-BTA-5696091",
"R-HSA-71691",
"R-MMU-71691",
"R-OSA-71723",
"R-CFA-71691",
"R-RNO-5696091",
"R-TGU-71691",
"R-SSC-71691",
"R-ATH-71723",
"R-HSA-5696091",
"R-SCE-71691",
"R-ATH-71691",
"R-TGU-71723",
"R-XTR-5696091",
"R-OSA-71691",
"R-RNO-71723",
"R-XTR-71723",
"R-SCE-71723",
"R-CFA-71723",
"R-BTA-71691",
"R-CFA-5696091",
"R-CEL-71723",
"R-SSC-71723",
"R-GGA-71723",
"R-GGA-71691"
],
"rhea":[
"25294",
"25297",
"25296",
"25295"
],
"sabiork":[
"544"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00506"
]
}
},
{
"id":"AM3PA",
"name":"Anhydrous-N-Acetylmuramyl-tripeptide amidase",
"metabolites":{
"LalaDgluMdap_c":1.0,
"anhm3p_c":-1.0,
"anhm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1188 or Gmet_1425",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AM3PA"
]
},
"annotation":{
"bigg.reaction":[
"AM3PA"
],
"metanetx.reaction":[
"MNXR95792"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08123"
]
}
},
{
"id":"AM4PA",
"name":"Anhydrous-N-Acetylmuramyl-tetrapeptide amidase",
"metabolites":{
"LalaDgluMdapDala_c":1.0,
"anhm4p_c":-1.0,
"anhm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1188 or Gmet_1425",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AM4PA"
]
},
"annotation":{
"bigg.reaction":[
"AM4PA"
],
"metanetx.reaction":[
"MNXR95793"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08124"
]
}
},
{
"id":"AM4PCP",
"name":"Anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase",
"metabolites":{
"ala__D_c":1.0,
"anhm3p_c":1.0,
"anhm4p_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AM4PCP"
]
},
"annotation":{
"bigg.reaction":[
"AM4PCP"
],
"metanetx.reaction":[
"MNXR95794"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08125"
]
}
},
{
"id":"AMALT1",
"name":"Amylomaltase (maltotriose)",
"metabolites":{
"glc__D_c":1.0,
"malt_c":-1.0,
"malttr_c":-1.0,
"maltttr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2391",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMALT1"
]
},
"annotation":{
"bigg.reaction":[
"AMALT1"
],
"biocyc":[
"META:AMYLOMALT-RXN"
],
"ec-code":[
"2.4.1.25"
],
"metanetx.reaction":[
"MNXR95800"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08126"
]
}
},
{
"id":"AMALT2",
"name":"Amylomaltase (maltotetraose)",
"metabolites":{
"glc__D_c":1.0,
"malt_c":-1.0,
"maltpt_c":1.0,
"maltttr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2391",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMALT2"
]
},
"annotation":{
"bigg.reaction":[
"AMALT2"
],
"biocyc":[
"META:RXN-14260"
],
"ec-code":[
"2.4.1.25"
],
"metanetx.reaction":[
"MNXR95801"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08127"
]
}
},
{
"id":"AMALT3",
"name":"Amylomaltase (maltopentaose)",
"metabolites":{
"glc__D_c":1.0,
"malt_c":-1.0,
"malthx_c":1.0,
"maltpt_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2391",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMALT3"
]
},
"annotation":{
"bigg.reaction":[
"AMALT3"
],
"biocyc":[
"META:RXN-14261"
],
"ec-code":[
"2.4.1.25"
],
"metanetx.reaction":[
"MNXR95802"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08128"
]
}
},
{
"id":"AMALT4",
"name":"Amylomaltase (maltohexaose)",
"metabolites":{
"glc__D_c":1.0,
"malt_c":-1.0,
"malthp_c":1.0,
"malthx_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2391",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMALT4"
]
},
"annotation":{
"bigg.reaction":[
"AMALT4"
],
"biocyc":[
"META:MALTODEG-RXN"
],
"ec-code":[
"2.4.1.25"
],
"metanetx.reaction":[
"MNXR95803"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08129"
]
}
},
{
"id":"AMAOTr",
"name":"Adenosylmethionine-8-amino-7-oxononanoate transaminase",
"metabolites":{
"8aonn_c":-1.0,
"amet_c":-1.0,
"amob_c":1.0,
"dann_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1580",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"AMAOTr"
]
},
"annotation":{
"bigg.reaction":[
"AMAOTr"
],
"biocyc":[
"META:DAPASYN-RXN"
],
"ec-code":[
"2.6.1.62"
],
"kegg.reaction":[
"R03231"
],
"metanetx.reaction":[
"MNXR95806"
],
"rhea":[
"16863",
"16861",
"16862",
"16864"
],
"sabiork":[
"3057"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02312"
]
}
},
{
"id":"AMMQLT8",
"name":"S-adenosylmethione:2-demthylmenaquinole methyltransferase (menaquinone 8)",
"metabolites":{
"2dmmql8_c":-1.0,
"ahcys_c":1.0,
"amet_c":-1.0,
"h_c":1.0,
"mql8_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1167",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"AMMQLT8"
]
},
"annotation":{
"bigg.reaction":[
"AMMQLT8"
],
"biocyc":[
"META:ADOMET-DMK-METHYLTRANSFER-RXN"
],
"ec-code":[
"2.1.1.163"
],
"metanetx.reaction":[
"MNXR95819"
],
"rhea":[
"30064",
"30063",
"30066",
"30065"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08130"
]
}
},
{
"id":"AMPMS2",
"name":"4-amino-2-methyl-5-phosphomethylpyrimidine synthetase",
"metabolites":{
"4ampm_c":1.0,
"air_c":-1.0,
"for_c":2.0,
"h2o_c":-1.0,
"h_c":3.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2910",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"AMPMS2"
]
},
"annotation":{
"bigg.reaction":[
"AMPMS2"
],
"metanetx.reaction":[
"MNXR142626"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ANHMK",
"name":"1,6-anhydrous-N-Acetylmuramate kinase",
"metabolites":{
"acmum6p_c":1.0,
"adp_c":1.0,
"anhm_c":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"ANHMK"
]
},
"annotation":{
"bigg.reaction":[
"ANHMK"
],
"metanetx.reaction":[
"MNXR95840"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08136"
]
}
},
{
"id":"ANPRT",
"name":"Anthranilate phosphoribosyltransferase",
"metabolites":{
"anth_c":-1.0,
"ppi_c":1.0,
"pran_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2495",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ANPRT"
]
},
"annotation":{
"bigg.reaction":[
"ANPRT"
],
"biocyc":[
"META:PRTRANS-RXN"
],
"ec-code":[
"2.4.2.18"
],
"kegg.reaction":[
"R01073"
],
"metanetx.reaction":[
"MNXR95842"
],
"rhea":[
"11771",
"11770",
"11768",
"11769"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00791"
]
}
},
{
"id":"ANS",
"name":"Anthranilate synthase",
"metabolites":{
"anth_c":1.0,
"chor_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2497 and Gmet_2496",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ANS"
]
},
"annotation":{
"bigg.reaction":[
"ANS"
],
"biocyc":[
"META:ANTHRANSYN-RXN"
],
"ec-code":[
"4.1.3.27"
],
"kegg.reaction":[
"R00986"
],
"metanetx.reaction":[
"MNXR95843"
],
"rhea":[
"21734",
"21733",
"21735",
"21732"
],
"sabiork":[
"1280"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00727"
]
}
},
{
"id":"AOXSr2",
"name":"8-amino-7-oxononanoate synthase",
"metabolites":{
"8aonn_c":1.0,
"ACP_c":1.0,
"ala__L_c":-1.0,
"co2_c":1.0,
"pimACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0842",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"AOXSr2"
]
},
"annotation":{
"bigg.reaction":[
"AOXSr2"
],
"biocyc":[
"META:RXN-11484"
],
"ec-code":[
"2.3.1.47"
],
"kegg.reaction":[
"R10124"
],
"metanetx.reaction":[
"MNXR95855"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APG3PAT120",
"name":"Acyl-phosphate:glycerol-3-phosphate acyltransferase (C12:0)",
"metabolites":{
"1ddecg3p_c":1.0,
"ddcap_c":-1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3020",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APG3PAT120"
]
},
"annotation":{
"bigg.reaction":[
"APG3PAT120"
],
"metanetx.reaction":[
"MNXR95869"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APG3PAT140",
"name":"Acyl-phosphate:glycerol-3-phosphate acyltransferase (C14:0)",
"metabolites":{
"1tdecg3p_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ttdcap_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3020",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APG3PAT140"
]
},
"annotation":{
"bigg.reaction":[
"APG3PAT140"
],
"metanetx.reaction":[
"MNXR95870"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APG3PAT141",
"name":"Acyl-phosphate:glycerol-3-phosphate acyltransferase (C14:1)",
"metabolites":{
"1tdec7eg3p_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ttdceap_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3020",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APG3PAT141"
]
},
"annotation":{
"bigg.reaction":[
"APG3PAT141"
],
"metanetx.reaction":[
"MNXR95871"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APG3PAT160",
"name":"Acyl-phosphate:glycerol-3-phosphate acyltransferase (C16:0)",
"metabolites":{
"1hdecg3p_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"hdcap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3020",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APG3PAT160"
]
},
"annotation":{
"bigg.reaction":[
"APG3PAT160"
],
"metanetx.reaction":[
"MNXR95872"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APG3PAT161",
"name":"Acyl-phosphate:glycerol-3-phosphate acyltransferase (C16:1)",
"metabolites":{
"1hdec9eg3p_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"hdceap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3020",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APG3PAT161"
]
},
"annotation":{
"bigg.reaction":[
"APG3PAT161"
],
"metanetx.reaction":[
"MNXR95873"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APG3PAT180",
"name":"Acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:0)",
"metabolites":{
"1odecg3p_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"ocdcap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3020",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APG3PAT180"
]
},
"annotation":{
"bigg.reaction":[
"APG3PAT180"
],
"metanetx.reaction":[
"MNXR95874"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APG3PAT181",
"name":"Acyl-phosphate:glycerol-3-phosphate acyltransferase (C18:1)",
"metabolites":{
"1odec11eg3p_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"ocdceap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3020",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APG3PAT181"
]
},
"annotation":{
"bigg.reaction":[
"APG3PAT181"
],
"metanetx.reaction":[
"MNXR95875"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APH120",
"name":"Acylphosphatase (C12:0)",
"metabolites":{
"ddca_c":1.0,
"ddcap_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2729",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APH120"
]
},
"annotation":{
"bigg.reaction":[
"APH120"
],
"metanetx.reaction":[
"MNXR95876"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APH140",
"name":"Acylphosphatase (C14:0)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"pi_c":1.0,
"ttdca_c":1.0,
"ttdcap_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2729",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APH140"
]
},
"annotation":{
"bigg.reaction":[
"APH140"
],
"metanetx.reaction":[
"MNXR95877"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APH141",
"name":"Acylphosphatase (C14:1)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"pi_c":1.0,
"ttdcea_c":1.0,
"ttdceap_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2729",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APH141"
]
},
"annotation":{
"bigg.reaction":[
"APH141"
],
"metanetx.reaction":[
"MNXR95878"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APH160",
"name":"Acylphosphatase (C16:0)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"hdca_c":1.0,
"hdcap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2729",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APH160"
]
},
"annotation":{
"bigg.reaction":[
"APH160"
],
"metanetx.reaction":[
"MNXR95879"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APH161",
"name":"Acylphosphatase (C16:1)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"hdcea_c":1.0,
"hdceap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2729",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APH161"
]
},
"annotation":{
"bigg.reaction":[
"APH161"
],
"metanetx.reaction":[
"MNXR95880"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APH180",
"name":"Acylphosphatase (C18:0)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"ocdca_c":1.0,
"ocdcap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2729",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APH180"
]
},
"annotation":{
"bigg.reaction":[
"APH180"
],
"metanetx.reaction":[
"MNXR95881"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APH181",
"name":"Acylphosphatase (C18:1)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"ocdcea_c":1.0,
"ocdceap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2729",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"APH181"
]
},
"annotation":{
"bigg.reaction":[
"APH181"
],
"metanetx.reaction":[
"MNXR95882"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APRAUR",
"name":"5-amino-6-(5-phosphoribosylamino)uracil reductase",
"metabolites":{
"5aprbu_c":1.0,
"5apru_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1624",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"APRAUR"
]
},
"annotation":{
"bigg.reaction":[
"APRAUR"
],
"biocyc":[
"META:RIBOFLAVINSYNREDUC-RXN"
],
"ec-code":[
"1.1.1.193"
],
"kegg.reaction":[
"R03458"
],
"metanetx.reaction":[
"MNXR95898"
],
"rhea":[
"17848",
"17846",
"17847",
"17845"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02474"
]
}
},
{
"id":"APSR",
"name":"Adenosine 5'-phosphosulfate reductase;",
"metabolites":{
"amp_c":1.0,
"aps_c":-1.0,
"h_c":2.0,
"so3_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2858",
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"APSPr"
]
},
"annotation":{
"bigg.reaction":[
"APSR"
],
"biocyc":[
"META:RXN-12019"
],
"ec-code":[
"1.8.4.10"
],
"kegg.reaction":[
"R07176"
],
"metanetx.reaction":[
"MNXR95901"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05256",
"rxn11051"
]
}
},
{
"id":"ARGDC",
"name":"Arginine decarboxylase",
"metabolites":{
"agm_c":1.0,
"arg__L_c":-1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0904",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ARGDC"
]
},
"annotation":{
"bigg.reaction":[
"ARGDC"
],
"biocyc":[
"META:ARGDECARBOX-RXN"
],
"ec-code":[
"4.1.1.19"
],
"kegg.reaction":[
"R00566"
],
"metanetx.reaction":[
"MNXR95940"
],
"reactome.reaction":[
"R-SPO-350598",
"R-XTR-350598",
"R-CFA-350598",
"R-DDI-350598",
"R-GGA-350598",
"R-SSC-350598",
"R-PFA-350598",
"R-TGU-350598",
"R-MMU-350598",
"R-SCE-350598",
"R-OSA-350598",
"R-RNO-350598",
"R-BTA-350598",
"R-ATH-350598",
"R-HSA-350598",
"R-DME-350598",
"R-CEL-350598"
],
"rhea":[
"17641",
"17642",
"17644",
"17643"
],
"sabiork":[
"594"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00405"
]
}
},
{
"id":"ARGSL",
"name":"Argininosuccinate lyase",
"metabolites":{
"arg__L_c":1.0,
"argsuc_c":-1.0,
"fum_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0209",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ARGSL"
]
},
"annotation":{
"bigg.reaction":[
"ARGSL"
],
"biocyc":[
"META:ARGSUCCINLYA-RXN"
],
"ec-code":[
"4.3.2.1"
],
"kegg.reaction":[
"R01086"
],
"metanetx.reaction":[
"MNXR138059"
],
"reactome.reaction":[
"R-SSC-70573",
"R-OSA-70573",
"R-SCE-70573",
"R-SPO-70573",
"R-GGA-70573",
"R-BTA-70573",
"R-DRE-70573",
"R-HSA-70573",
"R-TGU-70573",
"R-ATH-70573",
"R-XTR-70573",
"R-DME-70573"
],
"rhea":[
"24021",
"24020",
"24022",
"24023"
],
"sabiork":[
"573"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00802"
]
}
},
{
"id":"ARGSS",
"name":"Argininosuccinate synthase",
"metabolites":{
"amp_c":1.0,
"argsuc_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0,
"citr__L_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0206",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ARGSS"
]
},
"annotation":{
"bigg.reaction":[
"ARGSS"
],
"biocyc":[
"META:ARGSUCCINSYN-RXN"
],
"ec-code":[
"6.3.4.5"
],
"kegg.reaction":[
"R01954"
],
"metanetx.reaction":[
"MNXR138060"
],
"reactome.reaction":[
"R-MMU-70577",
"R-RNO-70577",
"R-GGA-70577",
"R-BTA-70577",
"R-SSC-70577",
"R-CFA-70577",
"R-XTR-70577",
"R-TGU-70577",
"R-HSA-70577"
],
"rhea":[
"10933",
"10935",
"10934",
"10932"
],
"sabiork":[
"572"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01434"
]
}
},
{
"id":"ARGTRS",
"name":"Arginyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"arg__L_c":-1.0,
"argtrna_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaarg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1434",
"objective_coefficient":-0.08170390742078,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ARGTRS"
]
},
"annotation":{
"bigg.reaction":[
"ARGTRS"
],
"ec-code":[
"6.1.1.19"
],
"kegg.reaction":[
"R03646"
],
"metanetx.reaction":[
"MNXR95950"
],
"reactome.reaction":[
"R-HSA-379993",
"R-HSA-380224"
],
"sabiork":[
"407"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06432"
]
}
},
{
"id":"ASAD",
"name":"Aspartate-semialdehyde dehydrogenase",
"metabolites":{
"4pasp_c":1.0,
"aspsa_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"pi_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0603 or Gmet_0604",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASAD"
]
},
"annotation":{
"bigg.reaction":[
"ASAD"
],
"biocyc":[
"META:ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.2.1.11"
],
"kegg.reaction":[
"R02291"
],
"metanetx.reaction":[
"MNXR96039"
],
"rhea":[
"24285",
"24284",
"24286",
"24287"
],
"sabiork":[
"2255"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01643"
]
}
},
{
"id":"ASNS1",
"name":"Asparagine synthase (glutamine-hydrolysing)",
"metabolites":{
"amp_c":1.0,
"asn__L_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2024 or Gmet_2172",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASNS1"
]
},
"annotation":{
"bigg.reaction":[
"ASNS1"
],
"biocyc":[
"META:ASNSYNB-RXN"
],
"ec-code":[
"6.3.5.4"
],
"kegg.reaction":[
"R00578"
],
"metanetx.reaction":[
"MNXR96059"
],
"reactome.reaction":[
"R-GGA-70599",
"R-BTA-70599",
"R-SPO-70599",
"R-PFA-70599",
"R-RNO-70599",
"R-MMU-70599",
"R-HSA-70599",
"R-SCE-70599",
"R-TGU-70599",
"R-DDI-70599",
"R-XTR-70599",
"R-ATH-70599",
"R-SSC-70599",
"R-DRE-70599",
"R-CFA-70599",
"R-OSA-70599"
],
"rhea":[
"12231",
"12229",
"12230",
"12228"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00416",
"rxn11214"
]
}
},
{
"id":"ASNTRS",
"name":"Asparaginyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"asn__L_c":-1.0,
"asntrna_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaasn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2412",
"objective_coefficient":-0.0527121983359872,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASNTRS"
]
},
"annotation":{
"bigg.reaction":[
"ASNTRS"
],
"ec-code":[
"6.1.1.22"
],
"kegg.reaction":[
"R03648"
],
"metanetx.reaction":[
"MNXR96064"
],
"reactome.reaction":[
"R-HSA-380227",
"R-HSA-379996"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11114",
"rxn06434"
]
}
},
{
"id":"ASO3t4pp",
"name":"Arsenite transporter via sodium antiport (periplasm)",
"metabolites":{
"aso3_c":-1.0,
"aso3_p":1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0520",
"objective_coefficient":-0.00395341487519905,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASO3t4pp"
]
},
"annotation":{
"bigg.reaction":[
"ASO3t4pp"
],
"metanetx.reaction":[
"MNXR96071"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ASO4rt2rpp",
"name":"Arsenate reversible transport via symport (periplasm)",
"metabolites":{
"aso4_c":1.0,
"aso4_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3131",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASO4rt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ASO4rt2rpp"
],
"biocyc":[
"META:TRANS-RXN0-550"
],
"metanetx.reaction":[
"MNXR96074"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13759"
]
}
},
{
"id":"ASO4t4pp",
"name":"Arsenate transporter via sodium antiport (periplasm)",
"metabolites":{
"aso4_c":-1.0,
"aso4_p":1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0520",
"objective_coefficient":-0.00593012231279858,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASO4t4pp"
]
},
"annotation":{
"bigg.reaction":[
"ASO4t4pp"
],
"metanetx.reaction":[
"MNXR96075"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ASO4tex",
"name":"Arsenate transporter (extracellular to periplasm)",
"metabolites":{
"aso4_e":-1.0,
"aso4_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"ASO4tex"
]
},
"annotation":{
"bigg.reaction":[
"ASO4tex"
],
"metanetx.reaction":[
"MNXR96076"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05506"
]
}
},
{
"id":"ASP1DC",
"name":"Aspartate 1-decarboxylase",
"metabolites":{
"ala_B_c":1.0,
"asp__L_c":-1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1644",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASP1DC"
]
},
"annotation":{
"bigg.reaction":[
"ASP1DC"
],
"biocyc":[
"META:ASPDECARBOX-RXN"
],
"ec-code":[
"4.1.1.15",
"4.1.1.11"
],
"kegg.reaction":[
"R00489"
],
"metanetx.reaction":[
"MNXR96077"
],
"rhea":[
"19500",
"19499",
"19498",
"19497"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00346"
]
}
},
{
"id":"ASPCT",
"name":"Aspartate carbamoyltransferase",
"metabolites":{
"asp__L_c":-1.0,
"cbasp_c":1.0,
"cbp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1769",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ASPCT"
]
},
"annotation":{
"bigg.reaction":[
"ASPCT"
],
"biocyc":[
"META:ASPCARBTRANS-RXN"
],
"ec-code":[
"2.1.3.2"
],
"kegg.reaction":[
"R01397"
],
"metanetx.reaction":[
"MNXR96080"
],
"reactome.reaction":[
"R-DDI-73573",
"R-RNO-73573",
"R-SPO-73573",
"R-DRE-73573",
"R-DME-73573",
"R-SCE-73573",
"R-CEL-73573",
"R-GGA-73573",
"R-SSC-73573",
"R-CFA-73573",
"R-ATH-73573",
"R-GGA-419451",
"R-MMU-73573",
"R-PFA-73573",
"R-BTA-73573",
"R-OSA-73573",
"R-HSA-73573",
"R-TGU-73573",
"R-XTR-73573"
],
"rhea":[
"20015",
"20014",
"20016",
"20013"
],
"sabiork":[
"398"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01018"
]
}
},
{
"id":"ASPK",
"name":"Aspartate kinase",
"metabolites":{
"4pasp_c":1.0,
"adp_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1880",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASPK"
]
},
"annotation":{
"bigg.reaction":[
"ASPK"
],
"biocyc":[
"META:ASPARTATEKIN-RXN"
],
"ec-code":[
"2.7.2.4"
],
"kegg.reaction":[
"R00480"
],
"metanetx.reaction":[
"MNXR96085"
],
"rhea":[
"23779",
"23777",
"23776",
"23778"
],
"sabiork":[
"912"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00337"
]
}
},
{
"id":"ASPO2",
"name":"L-aspartate oxidase",
"metabolites":{
"asp__L_c":-1.0,
"h_c":2.0,
"iasp_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1954",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASPO2"
]
},
"annotation":{
"bigg.reaction":[
"ASPO2"
],
"ec-code":[
"1.4.1.21"
],
"kegg.reaction":[
"R07410"
],
"metanetx.reaction":[
"MNXR96089"
],
"rhea":[
"42440",
"42442",
"42441",
"42443"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05119"
]
}
},
{
"id":"ASPT",
"name":"L-aspartase",
"metabolites":{
"asp__L_c":-1.0,
"fum_c":1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3082",
"objective_coefficient":-1.30104260698261e-18,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASPT"
]
},
"annotation":{
"bigg.reaction":[
"ASPT"
],
"biocyc":[
"META:ASPARTASE-RXN"
],
"ec-code":[
"4.3.1.1"
],
"kegg.reaction":[
"R00490"
],
"metanetx.reaction":[
"MNXR96099"
],
"rhea":[
"16603",
"16604",
"16602",
"16601"
],
"sabiork":[
"922"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00347"
]
}
},
{
"id":"ASPTA",
"name":"Aspartate transaminase",
"metabolites":{
"akg_c":-1.0,
"asp__L_c":-1.0,
"glu__L_c":1.0,
"oaa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3325 or Gmet_0732 or Gmet_3433 or Gmet_3173 or Gmet_2078",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASPTA"
]
},
"annotation":{
"bigg.reaction":[
"ASPTA"
],
"biocyc":[
"META:RXN-13697",
"META:ASPAMINOTRANS-RXN"
],
"ec-code":[
"2.6.1.1"
],
"kegg.reaction":[
"R00355"
],
"metanetx.reaction":[
"MNXR96079"
],
"reactome.reaction":[
"R-DME-70613",
"R-XTR-70581",
"R-CEL-70613",
"R-OSA-70613",
"R-BTA-70613",
"R-DDI-70613",
"R-DRE-70581",
"R-DRE-70613",
"R-SCE-70592",
"R-SPO-70596",
"R-SPO-70581",
"R-GGA-70592",
"R-HSA-70613",
"R-HSA-70592",
"R-DRE-70592",
"R-XTR-70592",
"R-DME-70592",
"R-CFA-70613",
"R-HSA-70596",
"R-PFA-70596",
"R-CEL-70592",
"R-CEL-70581",
"R-MMU-70596",
"R-MMU-70613",
"R-DRE-70596",
"R-ATH-70596",
"R-OSA-70596",
"R-ATH-70613",
"R-PFA-70613",
"R-TGU-70596",
"R-RNO-70581",
"R-TGU-70613",
"R-DME-70596",
"R-CFA-70596",
"R-SCE-70613",
"R-TGU-70581",
"R-SCE-70581",
"R-DME-70581",
"R-SPO-70613",
"R-SSC-70596",
"R-BTA-70592",
"R-XTR-70596",
"R-RNO-70613",
"R-XTR-70613",
"R-GGA-372717",
"R-CFA-70581",
"R-MMU-70592",
"R-PFA-70592",
"R-SSC-70592",
"R-BTA-70581",
"R-SPO-70592",
"R-DDI-70596",
"R-SSC-70613",
"R-CEL-70596",
"R-SSC-70581",
"R-RNO-70596",
"R-SCE-70596",
"R-GGA-70596",
"R-GGA-372559",
"R-CFA-70592",
"R-BTA-70596",
"R-PFA-70581",
"R-MMU-70581",
"R-RNO-70592",
"R-GGA-70613",
"R-HSA-70581",
"R-GGA-372564",
"R-GGA-70581",
"R-TGU-70592",
"R-GGA-372719"
],
"rhea":[
"21824",
"21827",
"21825",
"21826"
],
"sabiork":[
"825"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00260"
]
}
},
{
"id":"ASPTRS",
"name":"Aspartyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"asp__L_c":-1.0,
"asptrna_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaasp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1357",
"objective_coefficient":-0.0375574413143908,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ASPTRS"
]
},
"annotation":{
"bigg.reaction":[
"ASPTRS"
],
"ec-code":[
"6.1.1.12",
"6.1.1.23"
],
"kegg.reaction":[
"R05577"
],
"metanetx.reaction":[
"MNXR96101"
],
"sabiork":[
"402"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06936"
]
}
},
{
"id":"ASR2",
"name":"Arsenate reductase (thioredoxin)",
"metabolites":{
"aso3_c":1.0,
"aso4_c":-1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0521",
"objective_coefficient":-0.00593012231279859,
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"ASR2"
]
},
"annotation":{
"bigg.reaction":[
"ASR2"
],
"biocyc":[
"META:RXN-10737"
],
"ec-code":[
"1.20.4.1",
"1.20.4",
"1.20.4.4"
],
"kegg.reaction":[
"R10927"
],
"metanetx.reaction":[
"MNXR96114"
],
"sabiork":[
"13362"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ATPM",
"name":"ATP maintenance requirement",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.81,
"upper_bound":999999.0,
"gene_reaction_rule":"s_0001",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Biomass and maintenance functions",
"notes":{
"original_bigg_ids":[
"ATPM"
]
},
"annotation":{
"bigg.reaction":[
"ATPM"
],
"biocyc":[
"META:ATPASE-RXN"
],
"ec-code":[
"3.6.1.5",
"3.6.3.34",
"3.6.3.20",
"3.6.3.53",
"3.6.3.8",
"3.6.3.32",
"3.6.4.12",
"3.6.3.48",
"3.6.3.40",
"3.6.3.9",
"3.6.3.23",
"3.6.3.22",
"3.6.3.54",
"3.6.3.1",
"3.6.1.8",
"3.6.3.29",
"3.6.3.17",
"3.6.3.50",
"3.6.3.39",
"3.6.3.19",
"3.6.3.4",
"3.6.3.35",
"3.6.3.16",
"3.6.4.4",
"3.6.3.37",
"3.6.4.8",
"3.6.3.31",
"3.6.3.6",
"3.6.4.5",
"3.6.3.52",
"3.6.3.2",
"3.6.3.14",
"3.6.3.51",
"3.6.3.25",
"3.6.3.38",
"3.6.3.33",
"3.6.3.43",
"3.6.4.10",
"3.6.4.13",
"3.6.3.3",
"3.6.3.10",
"3.6.3.24",
"3.6.3.44",
"3.6.3.15",
"3.6.3.5",
"3.6.1.3",
"3.6.1.15",
"3.6.4.2",
"3.6.4.3",
"3.6.3.42",
"3.6.3.11",
"3.6.3.28",
"3.6.3.30",
"3.6.4.1",
"3.6.4.11",
"3.6.3.47",
"3.6.4.6",
"3.6.3.36",
"3.6.3.21",
"3.6.3.12",
"3.6.3.18",
"3.6.3.26",
"3.6.3.27",
"3.6.3.7",
"3.6.4.9",
"3.6.4.7",
"3.6.3.46",
"3.6.3.41",
"3.6.3.49"
],
"kegg.reaction":[
"R00086"
],
"metanetx.reaction":[
"MNXR96131"
],
"rhea":[
"13066",
"13065",
"13068",
"13067"
],
"sabiork":[
"75"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11300",
"rxn09694",
"rxn00062"
]
}
},
{
"id":"ATPPRT",
"name":"ATP phosphoribosyltransferase",
"metabolites":{
"atp_c":-1.0,
"ppi_c":1.0,
"prbatp_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0383 or Gmet_1898",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ATPPRT"
]
},
"annotation":{
"bigg.reaction":[
"ATPPRT"
],
"biocyc":[
"META:ATPPHOSPHORIBOSYLTRANS-RXN"
],
"ec-code":[
"2.4.2.17"
],
"kegg.reaction":[
"R01071"
],
"metanetx.reaction":[
"MNXR96132"
],
"rhea":[
"18476",
"18475",
"18473",
"18474"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00789"
]
}
},
{
"id":"ATPS10rpp",
"name":"ATP synthase (10 protons for 3 ATP) (periplasm)",
"metabolites":{
"adp_c":-3.0,
"atp_c":3.0,
"h2o_c":3.0,
"h_c":7.0,
"h_p":-10.0,
"pi_c":-3.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3359 and Gmet_3360 and Gmet_3405 and Gmet_3406 and Gmet_3407 and Gmet_3408 and Gmet_3409 and Gmet_3410 and Gmet_3411",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"ATPS10rpp"
]
},
"annotation":{
"bigg.reaction":[
"ATPS10rpp"
],
"metanetx.reaction":[
"MNXR96134"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BACCL",
"name":"Biotin acetyl CoA carboxylase ligase",
"metabolites":{
"atp_c":-1.0,
"btamp_c":1.0,
"btn_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1987",
"objective_coefficient":-0.62332174532305,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"BACCL"
]
},
"annotation":{
"bigg.reaction":[
"BACCL"
],
"ec-code":[
"6.3.4.10",
"6.2.1.11",
"6.3.4.15",
"6.3.4.11",
"6.3.4.9"
],
"metanetx.reaction":[
"MNXR138107"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00792"
]
}
},
{
"id":"CDGS1",
"name":"7-carboxy-7-deazaguanine synthase",
"metabolites":{
"amet_c":-1.0,
"cdg_c":1.0,
"cph4_c":-1.0,
"dad_5_c":1.0,
"flxr_c":-2.0,
"flxso_c":2.0,
"h_c":-2.0,
"met__L_c":1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2647 and Gmet_1658) or (Gmet_1442 and Gmet_1658) or (Gmet_1106 and Gmet_1658) or (Gmet_1815 and Gmet_1658)",
"objective_coefficient":-0.0691847603159831,
"subsystem":"Queuosine biosynthesis",
"notes":{
"original_bigg_ids":[
"CDGS1"
]
},
"annotation":{
"bigg.reaction":[
"CDGS1"
],
"metanetx.reaction":[
"MNXR96523"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ADK2",
"name":"Adenylate kinase (Inorganic triphosphate)",
"metabolites":{
"adp_c":1.0,
"amp_c":-1.0,
"ppi_c":1.0,
"pppi_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0647",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADK2"
]
},
"annotation":{
"bigg.reaction":[
"ADK2"
],
"ec-code":[
"2.7.4.3"
],
"metanetx.reaction":[
"MNXR95451"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10052"
]
}
},
{
"id":"ADK3",
"name":"Adentylate kinase (GTP)",
"metabolites":{
"adp_c":1.0,
"amp_c":-1.0,
"gdp_c":1.0,
"gtp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0647",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADK3"
]
},
"annotation":{
"bigg.reaction":[
"ADK3"
],
"biocyc":[
"META:RXN-14074"
],
"ec-code":[
"2.7.4.10",
"2.7.4.4"
],
"metanetx.reaction":[
"MNXR95452"
],
"reactome.reaction":[
"R-BTA-1008248",
"R-CFA-1008248",
"R-XTR-1008248",
"R-SCE-1008248",
"R-SSC-1008248",
"R-DDI-1008248",
"R-DME-1008248",
"R-HSA-1008248",
"R-GGA-1008248",
"R-RNO-1008248",
"R-TGU-1008248",
"R-CEL-1008248",
"R-DRE-1008248",
"R-MMU-1008248"
],
"rhea":[
"29865",
"29863",
"29866",
"29864"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08066"
]
}
},
{
"id":"ADK4",
"name":"Adentylate kinase (ITP)",
"metabolites":{
"adp_c":1.0,
"amp_c":-1.0,
"idp_c":1.0,
"itp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0647",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADK4"
]
},
"annotation":{
"bigg.reaction":[
"ADK4"
],
"metanetx.reaction":[
"MNXR95453"
],
"rhea":[
"29868",
"29870",
"29869",
"29867"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08067"
]
}
},
{
"id":"ADNK1",
"name":"Adenosine kinase",
"metabolites":{
"adn_c":-1.0,
"adp_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2683",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADNK1"
]
},
"annotation":{
"bigg.reaction":[
"ADNK1"
],
"biocyc":[
"META:ADENOSINE-KINASE-RXN"
],
"ec-code":[
"2.7.1.74",
"2.7.1.20"
],
"kegg.reaction":[
"R00185"
],
"metanetx.reaction":[
"MNXR95456"
],
"rhea":[
"20827",
"20824",
"20826",
"20825"
],
"sabiork":[
"252"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00134"
]
}
},
{
"id":"ADOCBIK",
"name":"Adenosyl cobinamide kinase",
"metabolites":{
"adocbi_c":-1.0,
"adocbip_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0466",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADOCBIK"
]
},
"annotation":{
"bigg.reaction":[
"ADOCBIK"
],
"biocyc":[
"META:COBINAMIDEKIN-RXN"
],
"ec-code":[
"2.7.1.156"
],
"kegg.reaction":[
"R05221"
],
"metanetx.reaction":[
"MNXR95465"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03536"
]
}
},
{
"id":"ADOCBLS",
"name":"Adenosylcobalamin 5'-phosphate synthase",
"metabolites":{
"adocbl_c":1.0,
"agdpcbi_c":-1.0,
"gmp_c":1.0,
"h_c":1.0,
"rdmbzi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0468",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADOCBLS"
]
},
"annotation":{
"bigg.reaction":[
"ADOCBLS"
],
"biocyc":[
"META:COBALAMINSYN-RXN"
],
"ec-code":[
"2.7.8.26"
],
"kegg.reaction":[
"R05223"
],
"metanetx.reaction":[
"MNXR95469"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03538"
]
}
},
{
"id":"ADPRDP",
"name":"ADPribose diphosphatase",
"metabolites":{
"adprib_c":-1.0,
"amp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"r5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0048 or Gmet_1790 or Gmet_1170 or Gmet_0988",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADPRDP"
]
},
"annotation":{
"bigg.reaction":[
"ADPRDP"
],
"ec-code":[
"3.6.1.13"
],
"metanetx.reaction":[
"MNXR95480"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ADPT",
"name":"Adenine phosphoribosyltransferase",
"metabolites":{
"ade_c":-1.0,
"amp_c":1.0,
"ppi_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1422",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADPT"
]
},
"annotation":{
"bigg.reaction":[
"ADPT"
],
"biocyc":[
"META:ADENPRIBOSYLTRAN-RXN"
],
"ec-code":[
"2.4.2.8",
"2.4.2.7"
],
"kegg.reaction":[
"R00190"
],
"metanetx.reaction":[
"MNXR95482"
],
"reactome.reaction":[
"R-RNO-74213",
"R-ATH-74213",
"R-BTA-74213",
"R-XTR-74213",
"R-HSA-74213",
"R-SCE-74213",
"R-GGA-74213",
"R-CFA-74213",
"R-OSA-74213",
"R-TGU-74213",
"R-SSC-74213",
"R-SPO-74213",
"R-CEL-74213",
"R-DRE-74213",
"R-DDI-74213",
"R-MMU-74213",
"R-DME-74213"
],
"rhea":[
"16610",
"16612",
"16611",
"16609"
],
"sabiork":[
"80"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00139"
]
}
},
{
"id":"ADSL1r",
"name":"Adenylsuccinate lyase",
"metabolites":{
"amp_c":1.0,
"dcamp_c":-1.0,
"fum_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1943",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADSL1"
]
},
"annotation":{
"bigg.reaction":[
"ADSL1r"
],
"biocyc":[
"META:AMPSYN-RXN"
],
"ec-code":[
"4.3.2.2"
],
"kegg.reaction":[
"R01083"
],
"metanetx.reaction":[
"MNXR95493"
],
"reactome.reaction":[
"R-GGA-421197",
"R-CEL-73828",
"R-DME-73828",
"R-PFA-73828",
"R-OSA-73828",
"R-RNO-73828",
"R-TGU-73828",
"R-ATH-73828",
"R-XTR-73828",
"R-MMU-73828",
"R-BTA-73828",
"R-SCE-73828",
"R-DRE-73828",
"R-GGA-73828",
"R-HSA-73828",
"R-SPO-73828",
"R-SSC-73828",
"R-DDI-73828"
],
"rhea":[
"16854",
"16853",
"16856",
"16855"
],
"sabiork":[
"306"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00800"
]
}
},
{
"id":"ADSL2r",
"name":"Adenylosuccinate lyase",
"metabolites":{
"25aics_c":-1.0,
"aicar_c":1.0,
"fum_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1943",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADSL2"
]
},
"annotation":{
"bigg.reaction":[
"ADSL2r"
],
"biocyc":[
"META:AICARSYN-RXN"
],
"ec-code":[
"4.3.2.2"
],
"kegg.reaction":[
"R04559"
],
"metanetx.reaction":[
"MNXR108966"
],
"reactome.reaction":[
"R-BTA-73800",
"R-SCE-73800",
"R-DME-73800",
"R-RNO-73800",
"R-ATH-73800",
"R-CEL-73800",
"R-TGU-73800",
"R-SSC-73800",
"R-PFA-73800",
"R-SPO-73800",
"R-GGA-419255",
"R-DDI-73800",
"R-OSA-73800",
"R-MMU-73800",
"R-GGA-73800",
"R-XTR-73800",
"R-DRE-73800",
"R-HSA-73800"
],
"rhea":[
"23920",
"23923",
"23922",
"23921"
],
"sabiork":[
"121"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ADSS",
"name":"Adenylosuccinate synthase",
"metabolites":{
"asp__L_c":-1.0,
"dcamp_c":1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"h_c":2.0,
"imp_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3260",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ADSS"
]
},
"annotation":{
"bigg.reaction":[
"ADSS"
],
"biocyc":[
"META:ADENYLOSUCCINATE-SYNTHASE-RXN"
],
"ec-code":[
"6.3.4.4"
],
"kegg.reaction":[
"R01135"
],
"metanetx.reaction":[
"MNXR95495"
],
"reactome.reaction":[
"R-GGA-421201",
"R-HSA-111524",
"R-SSC-111524",
"R-SCE-111524",
"R-MMU-111524",
"R-MMU-111519",
"R-DDI-111524",
"R-RNO-111524",
"R-SPO-111524",
"R-CFA-111524",
"R-OSA-111524",
"R-CEL-111524",
"R-DRE-111524",
"R-DME-111524",
"R-ATH-111524",
"R-GGA-111524",
"R-BTA-111524",
"R-TGU-111524",
"R-XTR-111524",
"R-PFA-111524"
],
"rhea":[
"15755",
"15756",
"15753",
"15754"
],
"sabiork":[
"228"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00838"
]
}
},
{
"id":"AGM3PA",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase",
"metabolites":{
"LalaDgluMdap_c":1.0,
"anhgm3p_c":-1.0,
"anhgm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1188 or Gmet_1425",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM3PA"
]
},
"annotation":{
"bigg.reaction":[
"AGM3PA"
],
"metanetx.reaction":[
"MNXR95543"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08073"
]
}
},
{
"id":"AGM3PApp",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase (periplasm)",
"metabolites":{
"LalaDgluMdap_p":1.0,
"anhgm3p_p":-1.0,
"anhgm_p":1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1188 or Gmet_1425",
"objective_coefficient":-0.00197670743759953,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM3PApp"
]
},
"annotation":{
"bigg.reaction":[
"AGM3PApp"
],
"metanetx.reaction":[
"MNXR95543"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08073"
]
}
},
{
"id":"AGM3PH",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide beta -1,4-N-acetylglucosaminidase",
"metabolites":{
"acgam_c":1.0,
"anhgm3p_c":-1.0,
"anhm3p_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2918 or Gmet_3177 or Gmet_0833",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM3PH"
]
},
"annotation":{
"bigg.reaction":[
"AGM3PH"
],
"metanetx.reaction":[
"MNXR95544"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08074"
]
}
},
{
"id":"AGM3Pt2pp",
"name":"GlcNAc-anhMurNAc tripeptide transport in via proton symport (periplasm)",
"metabolites":{
"anhgm3p_c":1.0,
"anhgm3p_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00197670743759964,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM3Pt2pp"
]
},
"annotation":{
"bigg.reaction":[
"AGM3Pt2pp"
],
"metanetx.reaction":[
"MNXR95545"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08075"
]
}
},
{
"id":"AGM4PA",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase",
"metabolites":{
"LalaDgluMdapDala_c":1.0,
"anhgm4p_c":-1.0,
"anhgm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1188 or Gmet_1425",
"objective_coefficient":-5.55111512312578e-17,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PA"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PA"
],
"metanetx.reaction":[
"MNXR95546"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08076"
]
}
},
{
"id":"AGM4PApp",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase (periplasm)",
"metabolites":{
"LalaDgluMdapDala_p":1.0,
"anhgm4p_p":-1.0,
"anhgm_p":1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1188 or Gmet_1425",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PApp"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PApp"
],
"metanetx.reaction":[
"MNXR95546"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08076"
]
}
},
{
"id":"AGM4PCP",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase",
"metabolites":{
"ala__D_c":1.0,
"anhgm3p_c":1.0,
"anhgm4p_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PCP"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PCP"
],
"metanetx.reaction":[
"MNXR95547"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08077"
]
}
},
{
"id":"AGM4PCPpp",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic)",
"metabolites":{
"ala__D_p":1.0,
"anhgm3p_p":1.0,
"anhgm4p_p":-1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PCPpp"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PCPpp"
],
"metanetx.reaction":[
"MNXR95547"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08077"
]
}
},
{
"id":"AGM4PH",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide beta -1,4-N-acetylglucosaminidase",
"metabolites":{
"acgam_c":1.0,
"anhgm4p_c":-1.0,
"anhm4p_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2918 or Gmet_3177 or Gmet_0833",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PH"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PH"
],
"metanetx.reaction":[
"MNXR95548"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08078"
]
}
},
{
"id":"AGM4Pt2pp",
"name":"GlcNAc-anhMurNAc tetrapeptide transport in via proton symport (periplasm)",
"metabolites":{
"anhgm4p_c":1.0,
"anhgm4p_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4Pt2pp"
]
},
"annotation":{
"bigg.reaction":[
"AGM4Pt2pp"
],
"metanetx.reaction":[
"MNXR95549"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08079"
]
}
},
{
"id":"AGMDA",
"name":"Agmatine deaminase",
"metabolites":{
"Ncbmpts_c":1.0,
"agm_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0711",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"AGMDA"
]
},
"annotation":{
"bigg.reaction":[
"AGMDA"
],
"biocyc":[
"META:AGMATINE-DEIMINASE-RXN"
],
"ec-code":[
"3.5.3.12"
],
"kegg.reaction":[
"R01416"
],
"metanetx.reaction":[
"MNXR95529"
],
"rhea":[
"18040",
"18038",
"18039",
"18037"
],
"sabiork":[
"1603"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01029"
]
}
},
{
"id":"AGMH",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl beta -1,4-N-acetylglucosaminidase",
"metabolites":{
"acgam_c":1.0,
"anhgm_c":-1.0,
"anhm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2918 or Gmet_3177 or Gmet_0833",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGMH"
]
},
"annotation":{
"bigg.reaction":[
"AGMH"
],
"metanetx.reaction":[
"MNXR95550"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08080"
]
}
},
{
"id":"AGMHE",
"name":"ADP-D-glycero-D-manno-heptose epimerase",
"metabolites":{
"adphep_DD_c":-1.0,
"adphep_LD_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"AGMHE"
]
},
"annotation":{
"bigg.reaction":[
"AGMHE"
],
"biocyc":[
"META:5.1.3.20-RXN"
],
"ec-code":[
"5.1.3.20"
],
"kegg.reaction":[
"R05176"
],
"metanetx.reaction":[
"MNXR95551"
],
"rhea":[
"17579",
"17578",
"17577",
"17580"
],
"sabiork":[
"4793"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03511"
]
}
},
{
"id":"AGMt2pp",
"name":"GlcNAc-anhMurNAc transport in via proton symport (periplasm)",
"metabolites":{
"anhgm_c":1.0,
"anhgm_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00658902479199857,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGMt2pp"
]
},
"annotation":{
"bigg.reaction":[
"AGMt2pp"
],
"metanetx.reaction":[
"MNXR95555"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08081"
]
}
},
{
"id":"AGPAT120",
"name":"1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C12:0)",
"metabolites":{
"1ddecg3p_c":-1.0,
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"pa120_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0363 or Gmet_0934",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT120"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT120"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95558"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT140",
"name":"1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:0)",
"metabolites":{
"1tdecg3p_c":-1.0,
"ACP_c":1.0,
"myrsACP_c":-1.0,
"pa140_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0363 or Gmet_0934",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT140"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT140"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95559"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT141",
"name":"1-tetradec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:1)",
"metabolites":{
"1tdec7eg3p_c":-1.0,
"ACP_c":1.0,
"pa141_c":1.0,
"tdeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0363 or Gmet_0934",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT141"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT141"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95560"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT160",
"name":"1-hexadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:0)",
"metabolites":{
"1hdecg3p_c":-1.0,
"ACP_c":1.0,
"pa160_c":1.0,
"palmACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0934 or Gmet_0363",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT160"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT160"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95561"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT161",
"name":"1-hexadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:1)",
"metabolites":{
"1hdec9eg3p_c":-1.0,
"ACP_c":1.0,
"hdeACP_c":-1.0,
"pa161_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0934 or Gmet_0363",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT161"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT161"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95564"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT180",
"name":"1-octadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:0)",
"metabolites":{
"1odecg3p_c":-1.0,
"ACP_c":1.0,
"ocdcaACP_c":-1.0,
"pa180_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0934 or Gmet_0363",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT180"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT180"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95565"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT181",
"name":"1-octadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:1)",
"metabolites":{
"1odec11eg3p_c":-1.0,
"ACP_c":1.0,
"octeACP_c":-1.0,
"pa181_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0934 or Gmet_0363",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT181"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT181"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95567"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPR",
"name":"N-acetyl-g-glutamyl-phosphate reductase",
"metabolites":{
"acg5p_c":1.0,
"acg5sa_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"pi_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0608",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPR"
]
},
"annotation":{
"bigg.reaction":[
"AGPR"
],
"biocyc":[
"META:N-ACETYLGLUTPREDUCT-RXN"
],
"ec-code":[
"1.2.1.38"
],
"kegg.reaction":[
"R03443"
],
"metanetx.reaction":[
"MNXR95530"
],
"rhea":[
"21590",
"21591",
"21588",
"21589"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02465"
]
}
},
{
"id":"AHCi",
"name":"Adenosylhomocysteinase",
"metabolites":{
"adn_c":1.0,
"ahcys_c":-1.0,
"h2o_c":-1.0,
"hcys__L_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1294",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"AHC"
]
},
"annotation":{
"bigg.reaction":[
"AHCi"
],
"biocyc":[
"META:ADENOSYLHOMOCYSTEINASE-RXN"
],
"ec-code":[
"3.3.1.1"
],
"kegg.reaction":[
"R00192"
],
"metanetx.reaction":[
"MNXR95492"
],
"reactome.reaction":[
"R-RNO-174401",
"R-CFA-174401",
"R-OSA-174401",
"R-XTR-174401",
"R-SSC-174401",
"R-DME-174401",
"R-BTA-174401",
"R-GGA-174401",
"R-MMU-174401",
"R-TGU-174401",
"R-HSA-174401",
"R-ATH-174401",
"R-SCE-174401",
"R-DRE-174401",
"R-CEL-174401"
],
"rhea":[
"21708",
"21710",
"21711",
"21709"
],
"sabiork":[
"738",
"8119"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00141"
]
}
},
{
"id":"AICART",
"name":"Phosphoribosylaminoimidazolecarboxamide formyltransferase",
"metabolites":{
"10fthf_c":-1.0,
"aicar_c":-1.0,
"fprica_c":1.0,
"thf_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2905",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"AICART"
]
},
"annotation":{
"bigg.reaction":[
"AICART"
],
"ec-code":[
"2.1.2.3"
],
"kegg.reaction":[
"R04560"
],
"metanetx.reaction":[
"MNXR95639"
],
"reactome.reaction":[
"R-BTA-73798",
"R-CFA-73798",
"R-DDI-73798",
"R-GGA-419254",
"R-SCE-73798",
"R-DRE-73798",
"R-TGU-73798",
"R-ATH-73798",
"R-HSA-73798",
"R-MMU-73798",
"R-DME-73798",
"R-OSA-73798",
"R-SPO-73798",
"R-SSC-73798",
"R-XTR-73798",
"R-RNO-73798",
"R-GGA-73798"
],
"rhea":[
"22192",
"22193",
"22195",
"22194"
],
"sabiork":[
"122"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AIRCr",
"name":"Phosphoribosylaminoimidazole carboxylase",
"metabolites":{
"5aizc_c":1.0,
"air_c":-1.0,
"co2_c":-1.0,
"h_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2903",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"AIRCr"
]
},
"annotation":{
"bigg.reaction":[
"AIRCr"
],
"ec-code":[
"4.1.1.21"
],
"metanetx.reaction":[
"MNXR95646"
],
"rhea":[
"10794",
"10795",
"10793",
"10792"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AKGDH",
"name":"2-Oxogluterate dehydrogenase",
"metabolites":{
"akg_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"succoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1896 and Gmet_2769 and Gmet_2766) or (Gmet_2764 and Gmet_2769 and Gmet_2766)",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"AKGDH"
]
},
"annotation":{
"bigg.reaction":[
"AKGDH"
],
"biocyc":[
"META:2OXOGLUTARATEDEH-RXN"
],
"ec-code":[
"1.2.1.52",
"2.3.1.61",
"1.8.1.4",
"1.2.4.2"
],
"kegg.reaction":[
"R08549"
],
"metanetx.reaction":[
"MNXR95655"
],
"reactome.reaction":[
"R-PFA-71401",
"R-XTR-71401",
"R-SCE-71401",
"R-SSC-71401",
"R-TGU-71401",
"R-ATH-71401",
"R-OSA-71401",
"R-SPO-71401",
"R-CEL-71401",
"R-RNO-71401",
"R-DRE-71401",
"R-GGA-373042",
"R-DDI-71401",
"R-CFA-71401",
"R-HSA-71401",
"R-BTA-71401",
"R-DME-71401",
"R-MMU-71401",
"R-GGA-71401"
],
"rhea":[
"27789",
"27788",
"27786",
"27787"
],
"sabiork":[
"8163"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08094"
]
}
},
{
"id":"ALAALAr",
"name":"D-alanine-D-alanine ligase (reversible)",
"metabolites":{
"adp_c":1.0,
"ala__D_c":-2.0,
"alaala_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0415",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"ALAALA"
]
},
"annotation":{
"bigg.reaction":[
"ALAALAr"
],
"biocyc":[
"META:DALADALALIG-RXN"
],
"ec-code":[
"6.3.2.4"
],
"kegg.reaction":[
"R01150"
],
"metanetx.reaction":[
"MNXR95678"
],
"rhea":[
"11226",
"11224",
"11225",
"11227"
],
"sabiork":[
"1391"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13802",
"rxn00851"
]
}
},
{
"id":"ALAALAD",
"name":"D-alanine-D-alanine dipeptidase",
"metabolites":{
"ala__D_c":2.0,
"alaala_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"ALAALAD"
]
},
"annotation":{
"bigg.reaction":[
"ALAALAD"
],
"biocyc":[
"META:3.4.13.22-RXN"
],
"ec-code":[
"3.4.13.22"
],
"kegg.reaction":[
"R07651"
],
"metanetx.reaction":[
"MNXR95675"
],
"rhea":[
"20662",
"20664",
"20663",
"20661"
],
"sabiork":[
"7268"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07466"
]
}
},
{
"id":"ALAALAabcpp",
"name":"D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"alaala_c":1.0,
"alaala_p":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ALAALAabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ALAALAabcpp"
],
"metanetx.reaction":[
"MNXR95677"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08098"
]
}
},
{
"id":"BCOALIG",
"name":"Benzoate CoA ligase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"benzcoa_c":1.0,
"bz_c":-1.0,
"coa_c":-1.0,
"h_c":-4.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2143",
"objective_coefficient":-2.77555756156289e-16,
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BCOALIG"
]
},
"annotation":{
"bigg.reaction":[
"BCOALIG"
],
"biocyc":[
"META:BENZOATE--COA-LIGASE-RXN"
],
"ec-code":[
"6.2.1.25"
],
"kegg.reaction":[
"R01422"
],
"metanetx.reaction":[
"MNXR96223"
],
"reactome.reaction":[
"R-SSC-159443",
"R-BTA-159443",
"R-RNO-159443",
"R-SCE-159443",
"R-MMU-159443",
"R-HSA-159443",
"R-DDI-159443",
"R-CFA-159443"
],
"rhea":[
"10135",
"10132",
"10133",
"10134"
],
"sabiork":[
"1609"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01035"
]
}
},
{
"id":"BCOALIG2",
"name":"4-hydroxybenzoate--coenzyme A ligase",
"metabolites":{
"4hbz_c":-1.0,
"4hbzcoa_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2143",
"objective_coefficient":-2.77555756156289e-16,
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BCOALIG2"
]
},
"annotation":{
"bigg.reaction":[
"BCOALIG2"
],
"biocyc":[
"META:4-HYDROXYBENZOATE--COA-LIGASE-RXN"
],
"ec-code":[
"6.2.1.27"
],
"kegg.reaction":[
"R01300"
],
"metanetx.reaction":[
"MNXR96224"
],
"rhea":[
"23118",
"23117",
"23119",
"23116"
],
"sabiork":[
"1515"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00964"
]
}
},
{
"id":"BCR6pp",
"name":"BenzoylCoA reductase (Ech associated, periplasm) 6 protons",
"metabolites":{
"benzcoa_c":-1.0,
"ch15deccoa_c":1.0,
"fdxo_42_c":1.0,
"fdxr_42_c":-1.0,
"h_c":4.0,
"h_p":-6.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"((Gmet_2080 and Gmet_2081 and Gmet_2083 and Gmet_2084 and Gmet_2085 and Gmet_2086 and Gmet_2087) and (Gmet_2596 and Gmet_2597 and Gmet_2598 and Gmet_2599 and Gmet_2600 and Gmet_2601)) or ((Gmet_2080 and Gmet_2081 and Gmet_2083 and Gmet_2084 and Gmet_2085 and Gmet_2086 and Gmet_2087) and (Gmet_0369 and Gmet_0371 and Gmet_0372 and Gmet_0373 and Gmet_0374 and Gmet_0375)) or ((Gmet_1802 and Gmet_1803 and Gmet_2080 and Gmet_2081 and Gmet_2083 and Gmet_2084 and Gmet_2085) and (Gmet_2596 and Gmet_2597 and Gmet_2598 and Gmet_2599 and Gmet_2600 and Gmet_2601)) or ((Gmet_1802 and Gmet_1803 and Gmet_2080 and Gmet_2081 and Gmet_2083 and Gmet_2084 and Gmet_2085) and (Gmet_0369 and Gmet_0371 and Gmet_0372 and Gmet_0373 and Gmet_0374 and Gmet_0375))",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BCR6pp"
]
},
"annotation":{
"bigg.reaction":[
"BCR6pp"
],
"metanetx.reaction":[
"MNXR96225"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BZDH",
"name":"Benzaldehyde dehydrogenase",
"metabolites":{
"bz_c":1.0,
"bzal_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2131",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BEALD"
]
},
"annotation":{
"bigg.reaction":[
"BZDH"
],
"biocyc":[
"META:BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN"
],
"ec-code":[
"1.2.1.29",
"1.2.1.28"
],
"kegg.reaction":[
"R01486",
"R01419"
],
"metanetx.reaction":[
"MNXR96365"
],
"rhea":[
"11843",
"11841",
"11842",
"11840"
],
"sabiork":[
"1606"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01032"
]
}
},
{
"id":"BMOCOS",
"name":"Bis-molybdenum cofactor synthase",
"metabolites":{
"amp_c":1.0,
"bmoco_c":1.0,
"cu2_c":1.0,
"moco_c":-1.0,
"mptamp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1038 or Gmet_0336 or Gmet_1804",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"BMOCOS"
]
},
"annotation":{
"bigg.reaction":[
"BMOCOS"
],
"metanetx.reaction":[
"MNXR138144"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BMOGDS1",
"name":"Bis-molybdopterin guanine dinucleotide synthase (single GDP)",
"metabolites":{
"bmoco1gdp_c":1.0,
"bmoco_c":-1.0,
"gtp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0300 or Gmet_1062",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"BMOGDS1"
]
},
"annotation":{
"bigg.reaction":[
"BMOGDS1"
],
"metanetx.reaction":[
"MNXR96315"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BMOGDS2",
"name":"Bis-molybdopterin guanine dinucleotide synthase",
"metabolites":{
"bmoco1gdp_c":-1.0,
"bmocogdp_c":1.0,
"gtp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0300 or Gmet_1062",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"BMOGDS2"
]
},
"annotation":{
"bigg.reaction":[
"BMOGDS2"
],
"metanetx.reaction":[
"MNXR96316"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BPNT",
"name":"3',5'-bisphosphate nucleotidase",
"metabolites":{
"amp_c":1.0,
"h2o_c":-1.0,
"pap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1419",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"BPNT"
]
},
"annotation":{
"bigg.reaction":[
"BPNT"
],
"biocyc":[
"META:325-BISPHOSPHATE-NUCLEOTIDASE-RXN"
],
"ec-code":[
"3.1.3.7",
"3.1.3.97"
],
"kegg.reaction":[
"R00188"
],
"metanetx.reaction":[
"MNXR96321"
],
"reactome.reaction":[
"R-DRE-176606",
"R-HSA-176606",
"R-RNO-176606",
"R-XTR-176606",
"R-SSC-176606",
"R-TGU-176606",
"R-CEL-176606",
"R-CFA-176606",
"R-DDI-176606",
"R-BTA-176606",
"R-DME-176606",
"R-GGA-176606",
"R-MMU-176606"
],
"rhea":[
"10041",
"10040",
"10043",
"10042"
],
"sabiork":[
"736"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00137",
"rxn11357"
]
}
},
{
"id":"BSCT",
"name":"Benzoylsuccinyl-CoA thiolase",
"metabolites":{
"benzcoa_c":1.0,
"coa_c":-1.0,
"h_c":-4.0,
"sbzcoa_c":-1.0,
"succoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1528 and Gmet_1529",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BSCT"
]
},
"annotation":{
"bigg.reaction":[
"BSCT"
],
"metanetx.reaction":[
"MNXR96324"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BTOHt2rpp",
"name":"Butanol transport via proton symport (periplasm)",
"metabolites":{
"btoh_c":1.0,
"btoh_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"BTOHt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"BTOHt2rpp"
],
"metanetx.reaction":[
"MNXR96339"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BTOHtex",
"name":"Butanol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"btoh_e":-1.0,
"btoh_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"BTOHtex"
]
},
"annotation":{
"bigg.reaction":[
"BTOHtex"
],
"metanetx.reaction":[
"MNXR96338"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BTS5",
"name":"Biotin synthase",
"metabolites":{
"2fe1s_c":1.0,
"2fe2s_c":-1.0,
"amet_c":-1.0,
"btn_c":1.0,
"dad_5_c":1.0,
"dtbt_c":-1.0,
"h_c":1.0,
"met__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1582",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"BTS5"
]
},
"annotation":{
"bigg.reaction":[
"BTS5"
],
"metanetx.reaction":[
"MNXR96344"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BUTAFDOR",
"name":"Butyraldehyde:ferredoxin oxidoreductase",
"metabolites":{
"btal_c":-1.0,
"but_c":1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h2o_c":-1.0,
"h_c":3.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1045",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"BUTAFDOR"
]
},
"annotation":{
"bigg.reaction":[
"BUTAFDOR"
],
"metanetx.reaction":[
"MNXR96348"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BUTKr",
"name":"Butyrate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"but_c":-1.0,
"butpi_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2106 or Gmet_2128",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"BUTKr"
]
},
"annotation":{
"bigg.reaction":[
"BUTKr"
],
"ec-code":[
"2.7.2.7"
],
"metanetx.reaction":[
"MNXR96349"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BUTSO3abcpp",
"name":"Butanesulfonate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"butso3_c":1.0,
"butso3_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1901 and Gmet_1899 and Gmet_1900) or (Gmet_0996 and Gmet_0997 and Gmet_0998)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"BUTSO3abcpp"
]
},
"annotation":{
"bigg.reaction":[
"BUTSO3abcpp"
],
"metanetx.reaction":[
"MNXR96350"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05512",
"rxn08181"
]
}
},
{
"id":"BUTSO3tex",
"name":"Butanesulfonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"butso3_e":-1.0,
"butso3_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"BUTSO3tex"
]
},
"annotation":{
"bigg.reaction":[
"BUTSO3tex"
],
"metanetx.reaction":[
"MNXR96351"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08182"
]
}
},
{
"id":"BUTt2rpp",
"name":"Butyrate transport via proton symport, reversible (periplasm)",
"metabolites":{
"but_c":1.0,
"but_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"objective_coefficient":-2.64545330086463e-17,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"BUTt2pp"
]
},
"annotation":{
"bigg.reaction":[
"BUTt2rpp"
],
"metanetx.reaction":[
"MNXR96353"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BUTt4pp",
"name":"Butyrate transport via sodium symport (periplasm)",
"metabolites":{
"but_c":1.0,
"but_p":-1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"objective_coefficient":-0.00197670743759955,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"BUTt4pp"
]
},
"annotation":{
"bigg.reaction":[
"BUTt4pp"
],
"metanetx.reaction":[
"MNXR96354"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BUTtex",
"name":"Butyrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"but_e":-1.0,
"but_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"BUTtex"
]
},
"annotation":{
"bigg.reaction":[
"BUTtex"
],
"metanetx.reaction":[
"MNXR96352"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BWCOGDS1",
"name":"Tungsten bispterin guanine dinucleotide synthase (single GDP)",
"metabolites":{
"bwco1gdp_c":1.0,
"bwco_c":-1.0,
"gtp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0300 or Gmet_1062",
"objective_coefficient":-0.160442753685162,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"BWCOGDS1"
]
},
"annotation":{
"bigg.reaction":[
"BWCOGDS1"
],
"metanetx.reaction":[
"MNXR96356"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BWCOGDS2",
"name":"Tungsten bispterin guanine dinucleotide synthase",
"metabolites":{
"bwco1gdp_c":-1.0,
"bwcogdp_c":1.0,
"gtp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0300 or Gmet_1062",
"objective_coefficient":-0.160442753685162,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"BWCOGDS2"
]
},
"annotation":{
"bigg.reaction":[
"BWCOGDS2"
],
"metanetx.reaction":[
"MNXR96357"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BWCOS",
"name":"Tungsten bispterin cofactor synthase",
"metabolites":{
"amp_c":1.0,
"bwco_c":1.0,
"cu2_c":1.0,
"mptamp_c":-1.0,
"wco_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1038 or Gmet_0336 or Gmet_1804",
"objective_coefficient":-0.239511051189144,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"BWCOS"
]
},
"annotation":{
"bigg.reaction":[
"BWCOS"
],
"metanetx.reaction":[
"MNXR138151"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BZALCt2pp",
"name":"Benzyl alcohol transport in via proton symport (periplasm)",
"metabolites":{
"bzalc_c":1.0,
"bzalc_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"BZALCt2pp"
]
},
"annotation":{
"bigg.reaction":[
"BZALCt2pp"
],
"metanetx.reaction":[
"MNXR96360"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BZALCtex",
"name":"Benzyl alcohol transport via diffusion (extraorganism to periplasm)",
"metabolites":{
"bzalc_e":1.0,
"bzalc_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"BZALCtex"
]
},
"annotation":{
"bigg.reaction":[
"BZALCtex"
],
"metanetx.reaction":[
"MNXR96361"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12384"
]
}
},
{
"id":"BZALDH",
"name":"Benzyl alcohol dehydrogenase",
"metabolites":{
"bzal_c":1.0,
"bzalc_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2235",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BZALDHr"
]
},
"annotation":{
"bigg.reaction":[
"BZALDH"
],
"biocyc":[
"META:BENZYL-ALC-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.90",
"1.1.1.21",
"1.1.1.1"
],
"kegg.reaction":[
"R01487",
"R01763"
],
"metanetx.reaction":[
"MNXR96362"
],
"sabiork":[
"1862"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01293",
"rxn14095"
]
}
},
{
"id":"BZALt2pp",
"name":"Benzaldehyde transport in via proton symport (periplasm)",
"metabolites":{
"bzal_c":1.0,
"bzal_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"BZALt2pp"
]
},
"annotation":{
"bigg.reaction":[
"BZALt2pp"
],
"metanetx.reaction":[
"MNXR96363"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BZALtex",
"name":"Benzaldehyde transport via diffusion (Extra-organism to periplasm)",
"metabolites":{
"bzal_e":1.0,
"bzal_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"BZALtex"
]
},
"annotation":{
"bigg.reaction":[
"BZALtex"
],
"metanetx.reaction":[
"MNXR96364"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BZSCD",
"name":"Benzylsuccinyl-CoA dehydrogenase",
"metabolites":{
"bzsuccoa_c":-1.0,
"fad_c":-1.0,
"fadh2_c":1.0,
"phitcoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1523",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BZSCD"
]
},
"annotation":{
"bigg.reaction":[
"BZSCD"
],
"metanetx.reaction":[
"MNXR96367"
],
"rhea":[
"20876",
"20879",
"20878",
"20877"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BZSCT",
"name":"Benzylsuccinate CoA-transferase",
"metabolites":{
"bzsucc_c":-1.0,
"bzsuccoa_c":1.0,
"succ_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1521 and Gmet_1522",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BZSCT"
]
},
"annotation":{
"bigg.reaction":[
"BZSCT"
],
"biocyc":[
"META:RXN-864"
],
"ec-code":[
"2.8.3.15"
],
"kegg.reaction":[
"R05588"
],
"metanetx.reaction":[
"MNXR96368"
],
"rhea":[
"16469",
"16472",
"16470",
"16471"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03868"
]
}
},
{
"id":"BZSS",
"name":"Benzylsuccinate synthase",
"metabolites":{
"bzsucc_c":1.0,
"fum_c":-1.0,
"tol_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1538 and Gmet_1539 and Gmet_1540 and Gmet_1541",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"BZSS"
]
},
"annotation":{
"bigg.reaction":[
"BZSS"
],
"biocyc":[
"META:RXN-863"
],
"ec-code":[
"4.1.99.11"
],
"kegg.reaction":[
"R05598"
],
"metanetx.reaction":[
"MNXR96369"
],
"rhea":[
"10418",
"10419",
"10417",
"10416"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03877"
]
}
},
{
"id":"BZt1pp",
"name":"Benzoate transport in via proton symport (periplasm)",
"metabolites":{
"bz_c":1.0,
"bz_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"BZt2pp"
]
},
"annotation":{
"bigg.reaction":[
"BZt1pp"
],
"metanetx.reaction":[
"MNXR96371"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12435"
]
}
},
{
"id":"BZtex",
"name":"Benzoate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"bz_e":-1.0,
"bz_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"BZtex"
]
},
"annotation":{
"bigg.reaction":[
"BZtex"
],
"metanetx.reaction":[
"MNXR96370"
],
"rhea":[
"32812",
"32813",
"32811",
"32814"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12436"
]
}
},
{
"id":"CA2abc1pp",
"name":"Calcium transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ca2_c":-1.0,
"ca2_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0131780495839969,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CA2abc1pp"
]
},
"annotation":{
"bigg.reaction":[
"CA2abc1pp"
],
"biocyc":[
"META:TRANS-RXN-194",
"META:3.6.3.8-RXN"
],
"ec-code":[
"3.6.3.8",
"3.6.3"
],
"metanetx.reaction":[
"MNXR96435"
],
"reactome.reaction":[
"R-CFA-936883",
"R-DRE-936883",
"R-SPO-936883",
"R-TGU-936883",
"R-HSA-936883",
"R-XTR-936883",
"R-BTA-936883",
"R-CEL-936883",
"R-GGA-936883",
"R-RNO-936883",
"R-MMU-936883",
"R-SCE-936883",
"R-DME-936883",
"R-SSC-936883"
],
"rhea":[
"18106#1",
"18107#1",
"18105#1",
"18108#1"
],
"sabiork":[
"6949#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05513"
]
}
},
{
"id":"CA2abcpp",
"name":"Calcium transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ca2_c":1.0,
"ca2_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3497",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CA2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"CA2abcpp"
],
"biocyc":[
"META:TRANS-RXN-193"
],
"ec-code":[
"3.6.3.8",
"3.6.3"
],
"metanetx.reaction":[
"MNXR96434"
],
"rhea":[
"18107#2",
"18106#2",
"18105#2",
"18108#2"
],
"sabiork":[
"6949#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10447"
]
}
},
{
"id":"CA2tex",
"name":"Calcium (Ca+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ca2_e":-1.0,
"ca2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"CA2tex"
]
},
"annotation":{
"bigg.reaction":[
"CA2tex"
],
"biocyc":[
"META:TRANS-RXN0-497",
"META:TRANS-RXN-144"
],
"ec-code":[
"3.6.3.8"
],
"metanetx.reaction":[
"MNXR96436"
],
"reactome.reaction":[
"R-HSA-210420",
"R-GGA-139855",
"R-HSA-432164",
"R-HSA-8863009",
"R-DME-2089943",
"R-CEL-2089943",
"R-CFA-3295579",
"R-TGU-5577213",
"R-SSC-2685505",
"R-RNO-210420",
"R-RNO-418309",
"R-TGU-5263618",
"R-DME-139854",
"R-SCE-418309",
"R-SSC-2534359",
"R-SSC-5263618",
"R-DRE-5263618",
"R-GGA-265645",
"R-RNO-3295579",
"R-ATH-2685505",
"R-TGU-265645",
"R-XTR-5263618",
"R-XTR-139854",
"R-XTR-418309",
"R-MMU-5263618",
"R-TGU-139854",
"R-GGA-418309",
"R-SSC-139854",
"R-CFA-418309",
"R-CEL-432164",
"R-SSC-2855020",
"R-DME-432164",
"R-DRE-139855",
"R-CEL-3295579",
"R-CFA-2089943",
"R-CFA-265645",
"R-GGA-432164",
"R-RNO-432164",
"R-MMU-2089943",
"R-GGA-2855020",
"R-CFA-2534359",
"R-RNO-182097",
"R-SSC-139855",
"R-CEL-139854",
"R-DRE-432164",
"R-SSC-418309",
"R-RNO-139854",
"R-DME-3295579",
"R-TGU-3295579",
"R-HSA-5263618",
"R-DDI-2685505",
"R-HSA-2534359",
"R-TGU-139855",
"R-XTR-5577213",
"R-CFA-5577213",
"R-DDI-3295579",
"R-HSA-2685505",
"R-XTR-210420",
"R-HSA-3295579",
"R-HSA-2855020",
"R-GGA-210420",
"R-DRE-2089943",
"R-CFA-2855020",
"R-RNO-139855",
"R-DME-418309",
"R-MMU-432164",
"R-BTA-139855",
"R-HSA-139854",
"R-DDI-418309",
"R-HSA-5577213",
"R-GGA-2089943",
"R-BTA-139854",
"R-CFA-2685505",
"R-MMU-2855020",
"R-HSA-418309",
"R-BTA-5577213",
"R-HSA-434798",
"R-XTR-2089943",
"R-BTA-2685505",
"R-MMU-418309",
"R-SSC-210420",
"R-HSA-169683",
"R-SSC-2089943",
"R-DRE-5577213",
"R-ATH-418309",
"R-RNO-2089943",
"R-RNO-265645",
"R-BTA-2855020",
"R-XTR-3295579",
"R-MMU-2685505",
"R-MMU-265645",
"R-CFA-139855",
"R-TGU-2685505",
"R-CFA-139854",
"R-CEL-418309",
"R-GGA-2685505",
"R-GGA-139854",
"R-XTR-2855020",
"R-BTA-265645",
"R-RNO-5263618",
"R-SSC-3295579",
"R-HSA-2089943",
"R-TGU-2855020",
"R-BTA-418309",
"R-DRE-139854",
"R-DRE-265645",
"R-GGA-3295579",
"R-XTR-2685505",
"R-BTA-2089943",
"R-MMU-210420",
"R-XTR-139855",
"R-SSC-265645",
"R-CFA-210420",
"R-XTR-265645",
"R-DME-434802",
"R-TGU-418309",
"R-MMU-3295579",
"R-RNO-2855020",
"R-SSC-5577213",
"R-OSA-2685505",
"R-HSA-4420052",
"R-DRE-2855020",
"R-BTA-5263618",
"R-GGA-5263618",
"R-CEL-5263618",
"R-RNO-2685505",
"R-GGA-5577213",
"R-BTA-210420",
"R-DRE-3295579",
"R-HSA-139855",
"R-DRE-210420",
"R-DRE-2685505",
"R-RNO-2534359",
"R-TGU-2089943",
"R-CFA-5263618",
"R-MMU-2534359",
"R-TGU-432164",
"R-BTA-2534359",
"R-MMU-139855",
"R-MMU-5577213",
"R-CFA-432164",
"R-XTR-432164",
"R-CEL-265645",
"R-SPO-418309",
"R-RNO-5577213",
"R-HSA-265645",
"R-OSA-418309",
"R-DRE-418309",
"R-BTA-3295579",
"R-TGU-210420",
"R-MMU-139854",
"R-SSC-432164",
"R-BTA-432164",
"R-DME-5263618"
],
"rhea":[
"29671",
"29674",
"29673",
"29672"
],
"sabiork":[
"12376"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08186"
]
}
},
{
"id":"CAMPP",
"name":"3',5'-cyclic adenylate-2'-phosphate 2'-phosphatase",
"metabolites":{
"camp_c":1.0,
"campp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CAMPP"
]
},
"annotation":{
"bigg.reaction":[
"CAMPP"
],
"metanetx.reaction":[
"MNXR96447"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CBIAT",
"name":"Cobinamide adenyltransferase",
"metabolites":{
"adocbi_c":1.0,
"atp_c":-1.0,
"cbi_c":-1.0,
"h_c":-1.0,
"pppi_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1573",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CBIAT"
]
},
"annotation":{
"bigg.reaction":[
"CBIAT"
],
"biocyc":[
"META:BTUR2-RXN"
],
"ec-code":[
"2.5.1.17"
],
"metanetx.reaction":[
"MNXR96465"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CBLAT",
"name":"Cob(I)alamin adenosyltransferase",
"metabolites":{
"adocbl_c":1.0,
"atp_c":-1.0,
"cbl1_c":-1.0,
"h_c":-1.0,
"pppi_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1573",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CBLAT"
]
},
"annotation":{
"bigg.reaction":[
"CBLAT"
],
"biocyc":[
"META:COBALADENOSYLTRANS-RXN"
],
"ec-code":[
"2.5.1.17"
],
"kegg.reaction":[
"R01492"
],
"metanetx.reaction":[
"MNXR96476"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CBMKr",
"name":"Carbamate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cbp_c":1.0,
"co2_c":-1.0,
"h_c":2.0,
"nh4_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2786",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"CBMK"
]
},
"annotation":{
"bigg.reaction":[
"CBMKr"
],
"biocyc":[
"META:CARBAMATE-KINASE-RXN"
],
"ec-code":[
"2.7.2.2"
],
"kegg.reaction":[
"R00150"
],
"metanetx.reaction":[
"MNXR96482"
],
"rhea":[
"10154",
"10152",
"10155",
"10153"
],
"sabiork":[
"93"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00114"
]
}
},
{
"id":"CBPAH",
"name":"N-carbamoylputrescine amidohydrolase",
"metabolites":{
"Ncbmpts_c":-1.0,
"h2o_c":-2.0,
"h_c":-2.0,
"hco3_c":1.0,
"nh4_c":1.0,
"ptrc_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0710",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"CBPAH"
]
},
"annotation":{
"bigg.reaction":[
"CBPAH"
],
"metanetx.reaction":[
"MNXR96483"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CBPS",
"name":"Carbamoyl-phosphate synthase (glutamine-hydrolysing)",
"metabolites":{
"adp_c":2.0,
"atp_c":-2.0,
"cbp_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"hco3_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1771 and Gmet_1774) or (Gmet_0661 and Gmet_1771)",
"objective_coefficient":-0.0131780495839969,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CBPS"
]
},
"annotation":{
"bigg.reaction":[
"CBPS"
],
"biocyc":[
"META:CARBPSYN-RXN"
],
"ec-code":[
"6.3.5.5"
],
"kegg.reaction":[
"R00575"
],
"metanetx.reaction":[
"MNXR96485"
],
"reactome.reaction":[
"R-RNO-73577",
"R-GGA-73577",
"R-DRE-73577",
"R-ATH-73577",
"R-CFA-73577",
"R-MMU-73577",
"R-OSA-73577",
"R-CEL-73577",
"R-SPO-73577",
"R-GGA-419440",
"R-BTA-73577",
"R-SCE-73577",
"R-XTR-73577",
"R-DDI-73577",
"R-HSA-73577",
"R-PFA-73577",
"R-TGU-73577",
"R-SSC-73577",
"R-DME-73577"
],
"rhea":[
"18635",
"18633",
"18636",
"18634"
],
"sabiork":[
"203"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00414"
]
}
},
{
"id":"CCGS",
"name":"7-cyano-7-carbaguanine synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cdg_c":-1.0,
"h2o_c":1.0,
"h_c":1.0,
"nh4_c":-1.0,
"pi_c":1.0,
"preq0_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3075",
"objective_coefficient":-0.00856573222959797,
"subsystem":"Queuosine biosynthesis",
"notes":{
"original_bigg_ids":[
"CCGS"
]
},
"annotation":{
"bigg.reaction":[
"CCGS"
],
"biocyc":[
"META:RXN-12093"
],
"ec-code":[
"6.3.4.20"
],
"kegg.reaction":[
"R09978"
],
"metanetx.reaction":[
"MNXR96492"
],
"rhea":[
"27985",
"27984",
"27983",
"27982"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CD2t4pp",
"name":"Cadmium (Cd+2) transport out via proton antiport (periplasm)",
"metabolites":{
"cd2_c":-1.0,
"cd2_p":1.0,
"h_c":1.0,
"h_p":-1.0,
"k_c":1.0,
"k_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_3071) or ((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_3071)",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CD2t4pp"
]
},
"annotation":{
"bigg.reaction":[
"CD2t4pp"
],
"metanetx.reaction":[
"MNXR96498"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05517"
]
}
},
{
"id":"CD2tex",
"name":"Cadmium (Cd+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cd2_e":-1.0,
"cd2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"CD2tex"
]
},
"annotation":{
"bigg.reaction":[
"CD2tex"
],
"biocyc":[
"META:RXN0-10"
],
"metanetx.reaction":[
"MNXR96499"
],
"rhea":[
"28709",
"28708",
"28707",
"28710"
],
"sabiork":[
"13041"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08198",
"rxn08197"
]
}
},
{
"id":"CDGR",
"name":"7-cyano-7-deazaguanine reductase",
"metabolites":{
"h_c":-3.0,
"nadp_c":2.0,
"nadph_c":-2.0,
"preq0_c":-1.0,
"preq1_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1659",
"objective_coefficient":-0.00593012231279866,
"subsystem":"Queuosine biosynthesis",
"notes":{
"original_bigg_ids":[
"CDGR"
]
},
"annotation":{
"bigg.reaction":[
"CDGR"
],
"biocyc":[
"META:RXN0-4022"
],
"ec-code":[
"1.7.1.13"
],
"kegg.reaction":[
"R07605"
],
"metanetx.reaction":[
"MNXR96521"
],
"rhea":[
"13410",
"13411",
"13412",
"13409"
],
"sabiork":[
"13537"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CTECOAI7",
"name":"3-cis-2-trans-enoyl-CoA isomerase",
"metabolites":{
"hdcoa_c":-1.0,
"hdd2coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2071 or Gmet_1572 or Gmet_2207 or Gmet_3305 or Gmet_2212 or Gmet_2195 or Gmet_3284 or Gmet_1575 or Gmet_2204 or Gmet_2196 or Gmet_2224 or Gmet_2057",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"CTECOAI7"
]
},
"annotation":{
"bigg.reaction":[
"CTECOAI7"
],
"ec-code":[
"5.3.3.8"
],
"metanetx.reaction":[
"MNXR96941"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CTECOAI8",
"name":"3-cis-2-trans-enoyl-CoA isomerase",
"metabolites":{
"od2coa_c":1.0,
"odecoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2071 or Gmet_1572 or Gmet_2207 or Gmet_3305 or Gmet_2212 or Gmet_2195 or Gmet_3284 or Gmet_1575 or Gmet_2204 or Gmet_2196 or Gmet_2224 or Gmet_2057",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"CTECOAI8"
]
},
"annotation":{
"bigg.reaction":[
"CTECOAI8"
],
"ec-code":[
"5.3.3.8"
],
"metanetx.reaction":[
"MNXR96942"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CDGUNPD",
"name":"3,5-cyclic-nucleotide phosphodiesterase",
"metabolites":{
"5pg35pg_c":1.0,
"cdigmp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0700 or Gmet_0782 or Gmet_0957 or Gmet_0987 or Gmet_2417 or Gmet_2629 or Gmet_3085 or Gmet_0849 or Gmet_1365 or Gmet_1919 or Gmet_1991 or Gmet_2559 or Gmet_2714 or Gmet_2999 or Gmet_3275 or Gmet_3476 or Gmet_0018 or Gmet_1560 or Gmet_2817",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CDGUNPD"
]
},
"annotation":{
"bigg.reaction":[
"CDGUNPD"
],
"metanetx.reaction":[
"MNXR96524"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CDPMEK",
"name":"4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase",
"metabolites":{
"2p4c2me_c":1.0,
"4c2me_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2849",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CDPMEK"
]
},
"annotation":{
"bigg.reaction":[
"CDPMEK"
],
"biocyc":[
"META:2.7.1.148-RXN"
],
"ec-code":[
"2.7.1.148"
],
"kegg.reaction":[
"R05634"
],
"metanetx.reaction":[
"MNXR96558"
],
"rhea":[
"18437",
"18440",
"18438",
"18439"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03908"
]
}
},
{
"id":"CFAS160E",
"name":"Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C16:0)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"cpe160_c":1.0,
"h_c":2.0,
"pe161_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2187",
"objective_coefficient":-0.438829051147092,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CFAS160E"
]
},
"annotation":{
"bigg.reaction":[
"CFAS160E"
],
"ec-code":[
"2.1.1.79"
],
"metanetx.reaction":[
"MNXR96652"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CFAS160G",
"name":"Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C16:0)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"cpg160_c":1.0,
"h_c":2.0,
"pg161_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2187",
"objective_coefficient":-0.451348198251889,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CFAS160G"
]
},
"annotation":{
"bigg.reaction":[
"CFAS160G"
],
"ec-code":[
"2.1.1.79"
],
"metanetx.reaction":[
"MNXR96653"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08207"
]
}
},
{
"id":"CFAS180E",
"name":"Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C18:0)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"cpe180_c":1.0,
"h_c":2.0,
"pe181_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2187",
"objective_coefficient":-0.492859054441479,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CFAS180E"
]
},
"annotation":{
"bigg.reaction":[
"CFAS180E"
],
"ec-code":[
"2.1.1.79"
],
"metanetx.reaction":[
"MNXR96654"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CFAS180G",
"name":"Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C18:0)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"cpg180_c":1.0,
"h_c":2.0,
"pg181_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2187",
"objective_coefficient":-0.505378201546276,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CFAS180G"
]
},
"annotation":{
"bigg.reaction":[
"CFAS180G"
],
"ec-code":[
"2.1.1.79"
],
"metanetx.reaction":[
"MNXR96655"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CHDCCH",
"name":"Cyclohexa-1,5-dienecarbonyl-CoA hydro-lyase",
"metabolites":{
"6hch1eccoa_c":1.0,
"ch15deccoa_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2150",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"CHDCCH"
]
},
"annotation":{
"bigg.reaction":[
"CHDCCH"
],
"biocyc":[
"META:4.2.1.100-RXN"
],
"ec-code":[
"4.2.1.100"
],
"kegg.reaction":[
"R05597"
],
"metanetx.reaction":[
"MNXR96668"
],
"rhea":[
"21859",
"21858",
"21856",
"21857"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03876"
]
}
},
{
"id":"CHORM",
"name":"Chorismate mutase",
"metabolites":{
"chor_c":-1.0,
"pphn_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0862 or Gmet_1955",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CHORM"
]
},
"annotation":{
"bigg.reaction":[
"CHORM"
],
"biocyc":[
"META:CHORISMATEMUT-RXN"
],
"ec-code":[
"5.4.99.5"
],
"kegg.reaction":[
"R01715"
],
"metanetx.reaction":[
"MNXR96708"
],
"rhea":[
"13897",
"13899",
"13898",
"13900"
],
"sabiork":[
"1827"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01256"
]
}
},
{
"id":"CHORS",
"name":"Chorismate synthase",
"metabolites":{
"3psme_c":-1.0,
"chor_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0976",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CHORS"
]
},
"annotation":{
"bigg.reaction":[
"CHORS"
],
"biocyc":[
"META:CHORISMATE-SYNTHASE-RXN"
],
"ec-code":[
"4.2.3.5"
],
"kegg.reaction":[
"R01714"
],
"metanetx.reaction":[
"MNXR96709"
],
"rhea":[
"21020",
"21023",
"21022",
"21021"
],
"sabiork":[
"1826"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01255"
]
}
},
{
"id":"CITCIa",
"name":"Citramalate dehydratase",
"metabolites":{
"citac_c":1.0,
"citm_c":-1.0,
"h2o_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1268 and Gmet_1269",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CITCIa"
]
},
"annotation":{
"bigg.reaction":[
"CITCIa"
],
"metanetx.reaction":[
"MNXR96729"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CITCIb",
"name":"3-methylmalate hydratase",
"metabolites":{
"citac_c":-1.0,
"h2o_c":-1.0,
"r3mmal_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1268 and Gmet_1269",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CITCIb"
]
},
"annotation":{
"bigg.reaction":[
"CITCIb"
],
"biocyc":[
"META:RXN-7744"
],
"ec-code":[
"4.2.1.35"
],
"kegg.reaction":[
"R03898"
],
"metanetx.reaction":[
"MNXR96730"
],
"rhea":[
"42424",
"42425",
"42426",
"42427"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02751"
]
}
},
{
"id":"CITMS",
"name":"Citramalate synthase",
"metabolites":{
"accoa_c":-1.0,
"citm_c":1.0,
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1879",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CITMS"
]
},
"annotation":{
"bigg.reaction":[
"CITMS"
],
"metanetx.reaction":[
"MNXR96734"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNS120pp",
"name":"Cardiolipin synthase (periplasmic, n-C12:0)",
"metabolites":{
"clpn120_p":1.0,
"glyc_p":1.0,
"pg120_p":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0078 or Gmet_3078 or Gmet_0065",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS120pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS120pp"
],
"metanetx.reaction":[
"MNXR96781"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNS140pp",
"name":"Cardiolipin synthase (periplasmic, n-C14:0)",
"metabolites":{
"clpn140_p":1.0,
"glyc_p":1.0,
"pg140_p":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3078 or Gmet_0065 or Gmet_0078",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS140pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS140pp"
],
"metanetx.reaction":[
"MNXR96782"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNS141pp",
"name":"Cardiolipin synthase (periplasmic, n-C14:1)",
"metabolites":{
"clpn141_p":1.0,
"glyc_p":1.0,
"pg141_p":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3078 or Gmet_0065 or Gmet_0078",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS141pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS141pp"
],
"metanetx.reaction":[
"MNXR96783"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNS160pp",
"name":"Cardiolipin synthase (periplasmic, n-C16:0)",
"metabolites":{
"clpn160_p":1.0,
"glyc_p":1.0,
"pg160_p":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3078 or Gmet_0065 or Gmet_0078",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS160pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS160pp"
],
"metanetx.reaction":[
"MNXR96784"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08229"
]
}
},
{
"id":"CLPNS161pp",
"name":"Cardiolipin synthase (periplasmic, n-C16:1)",
"metabolites":{
"clpn161_p":1.0,
"glyc_p":1.0,
"pg161_p":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3078 or Gmet_0065 or Gmet_0078",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS161pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS161pp"
],
"metanetx.reaction":[
"MNXR96786"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNS180pp",
"name":"Cardiolipin synthase (periplasmic, n-C18:0)",
"metabolites":{
"clpn180_p":1.0,
"glyc_p":1.0,
"pg180_p":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3078 or Gmet_0065 or Gmet_0078",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS180pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS180pp"
],
"metanetx.reaction":[
"MNXR96787"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNS181pp",
"name":"Cardiolipin synthase (periplasmic, n-C18:1)",
"metabolites":{
"clpn181_p":1.0,
"glyc_p":1.0,
"pg181_p":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3078 or Gmet_0065 or Gmet_0078",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS181pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS181pp"
],
"metanetx.reaction":[
"MNXR96788"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLt3_2pp",
"name":"Chloride transport out via proton antiport (2:1) (periplasm)",
"metabolites":{
"cl_c":2.0,
"cl_p":-2.0,
"h_c":-1.0,
"h_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3470",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CLt3r_2pp"
]
},
"annotation":{
"bigg.reaction":[
"CLt3_2pp"
],
"biocyc":[
"META:RXN0-2501"
],
"metanetx.reaction":[
"MNXR96796"
],
"rhea":[
"29569",
"29567",
"29568",
"29570"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08233"
]
}
},
{
"id":"CLtex",
"name":"Chloride (Cl-1) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cl_e":-1.0,
"cl_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"CLtex"
]
},
"annotation":{
"bigg.reaction":[
"CLtex"
],
"biocyc":[
"META:TRANS-RXN-139"
],
"metanetx.reaction":[
"MNXR96797"
],
"reactome.reaction":[
"R-TGU-975340",
"R-OSA-2684901",
"R-RNO-2744228",
"R-DDI-2744228",
"R-HSA-2744228",
"R-SSC-975449",
"R-CFA-2744242",
"R-CFA-975449",
"R-GGA-975389",
"R-TGU-975449",
"R-HSA-2684901",
"R-DRE-2744349",
"R-RNO-975449",
"R-GGA-427570",
"R-XTR-2684901",
"R-SSC-2744349",
"R-BTA-2684901",
"R-HSA-427570",
"R-TGU-975389",
"R-BTA-2744349",
"R-DME-2684901",
"R-SSC-2684901",
"R-SSC-975389",
"R-BTA-975389",
"R-MMU-975389",
"R-TGU-2744242",
"R-DME-2744242",
"R-CEL-975340",
"R-PFA-427570",
"R-GGA-975449",
"R-XTR-427570",
"R-CFA-975389",
"R-DRE-975449",
"R-SSC-427570",
"R-XTR-2744349",
"R-CEL-427570",
"R-DME-2744349",
"R-HSA-2744242",
"R-GGA-2744228",
"R-SSC-975340",
"R-BTA-2744228",
"R-CEL-975389",
"R-HSA-975340",
"R-DME-975389",
"R-DRE-2684901",
"R-RNO-2744242",
"R-MMU-975449",
"R-CFA-427570",
"R-DME-427570",
"R-HSA-975449",
"R-SSC-2744242",
"R-DRE-2744228",
"R-DRE-2744242",
"R-RNO-975340",
"R-GGA-2744242",
"R-RNO-2744361",
"R-MMU-2744361",
"R-BTA-975340",
"R-SCE-427570",
"R-OSA-427570",
"R-GGA-975340",
"R-RNO-427570",
"R-XTR-975340",
"R-MMU-2684901",
"R-CFA-2744361",
"R-CFA-975340",
"R-MMU-2744242",
"R-RNO-2744349",
"R-TGU-2744228",
"R-DME-2744228",
"R-DRE-2744361",
"R-BTA-427570",
"R-SSC-2744228",
"R-SSC-2744361",
"R-DDI-427570",
"R-CEL-2684901",
"R-MMU-2744349",
"R-CFA-2744228",
"R-MMU-975340",
"R-XTR-2744228",
"R-XTR-2744361",
"R-BTA-975449",
"R-SPO-2684901",
"R-ATH-427570",
"R-TGU-427570",
"R-BTA-2744242",
"R-CFA-2744349",
"R-GGA-2684901",
"R-DDI-2684901",
"R-CFA-2684901",
"R-DRE-975389",
"R-MMU-2744228",
"R-RNO-975389",
"R-HSA-2744349",
"R-BTA-2744361",
"R-GGA-2744361",
"R-RNO-2684901",
"R-XTR-975449",
"R-TGU-2684901",
"R-CEL-2744228",
"R-DRE-975340",
"R-XTR-975389",
"R-DME-2744361",
"R-HSA-975389",
"R-MMU-427570",
"R-HSA-2744361",
"R-CEL-2744361",
"R-TGU-2744361",
"R-XTR-2744242",
"R-DME-975340",
"R-SCE-2744228",
"R-ATH-2684901"
],
"rhea":[
"29823",
"29824",
"29826",
"29825"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10473",
"rxn08234"
]
}
},
{
"id":"CMPDAi",
"name":"CMP deaminase",
"metabolites":{
"cmp_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1622 or Gmet_0239",
"objective_coefficient":-0.00658902479199849,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CMPDAi"
]
},
"annotation":{
"bigg.reaction":[
"CMPDAi"
],
"ec-code":[
"3.5.4.12"
],
"metanetx.reaction":[
"MNXR96803"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10054"
]
}
},
{
"id":"CO2tex",
"name":"CO2 transport via diffusion (extracellular to periplasm)",
"metabolites":{
"co2_e":-1.0,
"co2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"CO2tex"
]
},
"annotation":{
"bigg.reaction":[
"CO2tex"
],
"biocyc":[
"META:TRANS-RXN0-545"
],
"metanetx.reaction":[
"MNXR96810"
],
"reactome.reaction":[
"R-DDI-1247645",
"R-CFA-1237069",
"R-TGU-1247649",
"R-CFA-1237042",
"R-CEL-1247645",
"R-XTR-1237069",
"R-HSA-1247645",
"R-OSA-1237042",
"R-GGA-1237042",
"R-BTA-1247645",
"R-GGA-1247649",
"R-RNO-1247645",
"R-XTR-1247645",
"R-TGU-1237042",
"R-SCE-1247649",
"R-MMU-1247649",
"R-CFA-1247649",
"R-GGA-1247645",
"R-SSC-1247645",
"R-BTA-1237069",
"R-RNO-1237069",
"R-SCE-1237042",
"R-DDI-1247649",
"R-SSC-1237042",
"R-DRE-1247649",
"R-DRE-1237042",
"R-DDI-1237042",
"R-DME-1237042",
"R-MMU-1237042",
"R-SSC-1247649",
"R-TGU-1237069",
"R-BTA-1247649",
"R-CFA-1247645",
"R-RNO-1247649",
"R-HSA-1237069",
"R-CEL-1237069",
"R-DDI-1237069",
"R-MMU-1237069",
"R-DME-1247645",
"R-ATH-1237042",
"R-OSA-1247649",
"R-HSA-1237042",
"R-DRE-1247645",
"R-HSA-1247649",
"R-MMU-1247645",
"R-DME-1237069",
"R-RNO-1237042",
"R-TGU-1247645",
"R-BTA-1237042",
"R-GGA-1237069",
"R-DME-1247649",
"R-SSC-1237069",
"R-DRE-1237069",
"R-ATH-1247649"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05467",
"rxn08237",
"rxn09706",
"rxn09821",
"rxn09775",
"rxn09876",
"rxn08238",
"rxn09860"
]
}
},
{
"id":"CO2tpp",
"name":"CO2 transporter via diffusion (periplasm)",
"metabolites":{
"co2_c":1.0,
"co2_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CO2tpp"
]
},
"annotation":{
"bigg.reaction":[
"CO2tpp"
],
"biocyc":[
"META:TRANS-RXN0-545"
],
"metanetx.reaction":[
"MNXR96810"
],
"reactome.reaction":[
"R-DDI-1247645",
"R-CFA-1237069",
"R-TGU-1247649",
"R-CFA-1237042",
"R-CEL-1247645",
"R-XTR-1237069",
"R-HSA-1247645",
"R-OSA-1237042",
"R-GGA-1237042",
"R-BTA-1247645",
"R-GGA-1247649",
"R-RNO-1247645",
"R-XTR-1247645",
"R-TGU-1237042",
"R-SCE-1247649",
"R-MMU-1247649",
"R-CFA-1247649",
"R-GGA-1247645",
"R-SSC-1247645",
"R-BTA-1237069",
"R-RNO-1237069",
"R-SCE-1237042",
"R-DDI-1247649",
"R-SSC-1237042",
"R-DRE-1247649",
"R-DRE-1237042",
"R-DDI-1237042",
"R-DME-1237042",
"R-MMU-1237042",
"R-SSC-1247649",
"R-TGU-1237069",
"R-BTA-1247649",
"R-CFA-1247645",
"R-RNO-1247649",
"R-HSA-1237069",
"R-CEL-1237069",
"R-DDI-1237069",
"R-MMU-1237069",
"R-DME-1247645",
"R-ATH-1237042",
"R-OSA-1247649",
"R-HSA-1237042",
"R-DRE-1247645",
"R-HSA-1247649",
"R-MMU-1247645",
"R-DME-1237069",
"R-RNO-1237042",
"R-TGU-1247645",
"R-BTA-1237042",
"R-GGA-1237069",
"R-DME-1247649",
"R-SSC-1237069",
"R-DRE-1237069",
"R-ATH-1247649"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05467",
"rxn08237",
"rxn09706",
"rxn09821",
"rxn09775",
"rxn09876",
"rxn08238",
"rxn09860"
]
}
},
{
"id":"COBALT2tex",
"name":"Cobalt (Co+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cobalt2_e":-1.0,
"cobalt2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"COBALT2tex"
]
},
"annotation":{
"bigg.reaction":[
"COBALT2tex"
],
"biocyc":[
"META:TRANS-RXN-141A"
],
"metanetx.reaction":[
"MNXR96821"
],
"rhea":[
"28579",
"28580",
"28581",
"28578"
],
"sabiork":[
"12148"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08241",
"rxn08242",
"rxn10474"
]
}
},
{
"id":"COBALTt4pp",
"name":"Cobalt transport out via proton antiporter (periplasm)",
"metabolites":{
"cobalt2_c":-1.0,
"cobalt2_p":1.0,
"h_c":1.0,
"h_p":-1.0,
"k_c":1.0,
"k_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_3071) or ((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_3071)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"COBALTt4pp"
]
},
"annotation":{
"bigg.reaction":[
"COBALTt4pp"
],
"metanetx.reaction":[
"MNXR96822"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CODH4",
"name":"Carbon monoxide dehydrogenase / acetyl-CoA synthase 2",
"metabolites":{
"co2_c":1.0,
"co_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h2o_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1902",
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"CODH4"
]
},
"annotation":{
"bigg.reaction":[
"CODH4"
],
"metanetx.reaction":[
"MNXR96829"
],
"sbo":"SBO:0000176"
}
},
{
"id":"Cobalt2abcppI",
"name":"Cobalt II transport via ABC system periplasm I",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cobalt2_c":1.0,
"cobalt2_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0472 and Gmet_0473 and Gmet_0475 and Gmet_0474",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"COabcpp"
]
},
"annotation":{
"bigg.reaction":[
"Cobalt2abcppI"
],
"metanetx.reaction":[
"MNXR96862"
],
"rhea":[
"32779#1",
"32780#1",
"32781#1",
"32782#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05166"
]
}
},
{
"id":"CPC2MT",
"name":"Precorrin-2 C20-methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"copre2_c":-1.0,
"copre3_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0482",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPC2MT"
]
},
"annotation":{
"bigg.reaction":[
"CPC2MT"
],
"biocyc":[
"META:RXN-8760"
],
"ec-code":[
"2.1.1.151"
],
"metanetx.reaction":[
"MNXR96832"
],
"rhea":[
"17997",
"17999",
"17998",
"18000"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04046"
]
}
},
{
"id":"CPC3MT",
"name":"Precorrin-3B C17-methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"copre3_c":-1.0,
"copre4_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0485",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPC3MT"
]
},
"annotation":{
"bigg.reaction":[
"CPC3MT"
],
"biocyc":[
"META:RXN-8761"
],
"ec-code":[
"2.1.1.131"
],
"kegg.reaction":[
"R05809"
],
"metanetx.reaction":[
"MNXR96833"
],
"rhea":[
"26274",
"26273",
"26276",
"26275"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04047"
]
}
},
{
"id":"CPC4MT",
"name":"Precorrin-4 C11-methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"copre4_c":-1.0,
"copre5_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0483",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPC4MT"
]
},
"annotation":{
"bigg.reaction":[
"CPC4MT"
],
"ec-code":[
"2.1.1.133"
],
"metanetx.reaction":[
"MNXR96864"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04048"
]
}
},
{
"id":"CPC5MT",
"name":"Precorrin-5 C1-methyltransferase",
"metabolites":{
"acald_c":1.0,
"ahcys_c":1.0,
"amet_c":-1.0,
"copre5_c":-1.0,
"copre6_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0478 and Gmet_0484",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPC5MT"
]
},
"annotation":{
"bigg.reaction":[
"CPC5MT"
],
"ec-code":[
"2.1.1.-"
],
"kegg.reaction":[
"R05811"
],
"metanetx.reaction":[
"MNXR96865"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04049"
]
}
},
{
"id":"CPC6MT",
"name":"Precorrin-6Y C5,15-methyltransferase (decarboxylating)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"co2_c":1.0,
"codhpre6_c":-1.0,
"copre8_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0481",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPC6MT"
]
},
"annotation":{
"bigg.reaction":[
"CPC6MT"
],
"ec-code":[
"2.1.1.132"
],
"kegg.reaction":[
"R05813"
],
"metanetx.reaction":[
"MNXR96866"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04051"
]
}
},
{
"id":"CPC6R",
"name":"Precorrin-6A reductase",
"metabolites":{
"codhpre6_c":1.0,
"copre6_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPC6R"
]
},
"annotation":{
"bigg.reaction":[
"CPC6R"
],
"ec-code":[
"1.3.1.54"
],
"metanetx.reaction":[
"MNXR96837"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04050"
]
}
},
{
"id":"CTPS1",
"name":"CTP synthase  NH3 ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ctp_c":1.0,
"h_c":2.0,
"nh4_c":-1.0,
"pi_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1276",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CTPS1"
]
},
"annotation":{
"bigg.reaction":[
"CTPS1"
],
"biocyc":[
"META:RXN-14325"
],
"ec-code":[
"6.3.4.2"
],
"kegg.reaction":[
"R00571"
],
"metanetx.reaction":[
"MNXR96944"
],
"rhea":[
"16597",
"16599",
"16598",
"16600"
],
"sabiork":[
"458"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00410"
]
}
},
{
"id":"CTPS2",
"name":"CTP synthase (glutamine)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ctp_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pi_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1276",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CTPS2"
]
},
"annotation":{
"bigg.reaction":[
"CTPS2"
],
"biocyc":[
"META:CTPSYN-RXN"
],
"ec-code":[
"6.3.4.2"
],
"kegg.reaction":[
"R00573"
],
"metanetx.reaction":[
"MNXR96945"
],
"reactome.reaction":[
"R-RNO-504054",
"R-TGU-73647",
"R-RNO-73647",
"R-PFA-73647",
"R-BTA-504054",
"R-MMU-504054",
"R-SSC-73647",
"R-BTA-73647",
"R-SCE-504054",
"R-XTR-504054",
"R-OSA-73647",
"R-SPO-504054",
"R-TGU-504054",
"R-PFA-504054",
"R-DRE-73647",
"R-DME-504054",
"R-MMU-73647",
"R-OSA-504054",
"R-CFA-73647",
"R-HSA-73647",
"R-DDI-73647",
"R-DME-73647",
"R-SCE-73647",
"R-HSA-504054",
"R-GGA-73647",
"R-CFA-504054",
"R-ATH-504054",
"R-ATH-73647",
"R-DDI-504054",
"R-XTR-73647",
"R-GGA-504054",
"R-SPO-73647",
"R-SSC-504054"
],
"rhea":[
"26427",
"26429",
"26426",
"26428"
],
"sabiork":[
"459"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00412",
"rxn11276"
]
}
},
{
"id":"CU2abcpp",
"name":"Copper (Cu+2) ABC transporter (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cu2_c":-1.0,
"cu2_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2772",
"objective_coefficient":-0.0131780495839969,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CU2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"CU2abcpp"
],
"biocyc":[
"META:TRANS-RXN-178",
"META:3.6.3.4-RXN"
],
"ec-code":[
"3.6.3.4",
"3.6.3"
],
"metanetx.reaction":[
"MNXR96950"
],
"reactome.reaction":[
"R-CFA-936802",
"R-DDI-936895",
"R-XTR-936802",
"R-BTA-936802",
"R-RNO-936895",
"R-SPO-936895",
"R-GGA-936895",
"R-TGU-936802",
"R-RNO-936802",
"R-XTR-936895",
"R-MMU-936895",
"R-TGU-936895",
"R-DME-936802",
"R-MMU-936802",
"R-HSA-936802",
"R-SSC-936802",
"R-DRE-936802",
"R-CFA-936895",
"R-DRE-936895",
"R-BTA-936895",
"R-CEL-936895",
"R-OSA-936895",
"R-DME-936895",
"R-GGA-936802",
"R-HSA-936895",
"R-CEL-936802",
"R-SCE-936895",
"R-ATH-936895"
],
"rhea":[
"10376#1",
"10377#1",
"10379#1",
"10378#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08271",
"rxn05528"
]
}
},
{
"id":"CU2tex",
"name":"Copper (Cu+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cu2_e":-1.0,
"cu2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"CU2tex"
]
},
"annotation":{
"bigg.reaction":[
"CU2tex"
],
"biocyc":[
"META:RXN0-14"
],
"metanetx.reaction":[
"MNXR96951"
],
"reactome.reaction":[
"R-HSA-437300",
"R-DME-437300",
"R-RNO-437300",
"R-SCE-437300",
"R-DRE-437300",
"R-XTR-437300",
"R-TGU-437300",
"R-BTA-437300",
"R-CFA-437300",
"R-SSC-437300",
"R-MMU-437300",
"R-GGA-437300"
],
"rhea":[
"28705",
"28706",
"28704",
"28703"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08274",
"rxn05212",
"rxn08273"
]
}
},
{
"id":"CUabcpp",
"name":"Copper transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cu2_c":1.0,
"cu2_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0491 and Gmet_0493 and Gmet_0492",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CUabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CUabcpp"
],
"ec-code":[
"3.6.3.4"
],
"metanetx.reaction":[
"MNXR96952"
],
"rhea":[
"10377#2",
"10378#2",
"10376#2",
"10379#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10481"
]
}
},
{
"id":"CUtex",
"name":"Copper (Cu+1) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cu_e":-1.0,
"cu_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"CUtex"
]
},
"annotation":{
"bigg.reaction":[
"CUtex"
],
"metanetx.reaction":[
"MNXR96954"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CYOO2pp",
"name":"Cytochrome-c oxidase (2 protons translocated) periplasm",
"metabolites":{
"ficytC_c":2.0,
"focytC_c":-2.0,
"h2o_c":1.0,
"h_c":-4.0,
"h_p":2.0,
"o2_c":-0.5
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0249 and Gmet_0250 and Gmet_0251 and Gmet_0252",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"CYOO2pp"
]
},
"annotation":{
"bigg.reaction":[
"CYOO2pp"
],
"ec-code":[
"1.9.3.1"
],
"metanetx.reaction":[
"MNXR138189"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13688"
]
}
},
{
"id":"CYRDAAT",
"name":"Cob(I)yrinic acid a,c-diamide adenosyltransferase",
"metabolites":{
"adcobdam_c":1.0,
"atp_c":-1.0,
"co1dam_c":-1.0,
"h_c":-1.0,
"pppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1573",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CYRDAAT"
]
},
"annotation":{
"bigg.reaction":[
"CYRDAAT"
],
"ec-code":[
"2.5.1.17"
],
"metanetx.reaction":[
"MNXR96982"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYRDAR",
"name":"Cob(II)yrinic acid a,c-diamide reductase",
"metabolites":{
"co1dam_c":2.0,
"co2dam_c":-2.0,
"h_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CYRDAR"
]
},
"annotation":{
"bigg.reaction":[
"CYRDAR"
],
"metanetx.reaction":[
"MNXR96983"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYRDAS",
"name":"Cob(II)yrinate a,c-diamide synthase (glutamine-hydrolysing)",
"metabolites":{
"adp_c":2.0,
"atp_c":-2.0,
"co2dam_c":1.0,
"cobya_c":-1.0,
"gln__L_c":-2.0,
"glu__L_c":2.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0470",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CYRDAS"
]
},
"annotation":{
"bigg.reaction":[
"CYRDAS"
],
"metanetx.reaction":[
"MNXR96985"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYSLY3",
"name":"Cysteine lyase (nadph)",
"metabolites":{
"ala__L_c":1.0,
"cys__L_c":-1.0,
"h2s_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1300",
"objective_coefficient":-0.0131780495839972,
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"CYSLY3"
]
},
"annotation":{
"bigg.reaction":[
"CYSLY3"
],
"metanetx.reaction":[
"MNXR97005"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CPC8MM",
"name":"Precorrin-8X methylmutase",
"metabolites":{
"cobya_c":1.0,
"copre8_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0477",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPC8MM"
]
},
"annotation":{
"bigg.reaction":[
"CPC8MM"
],
"biocyc":[
"META:RXN-8768"
],
"ec-code":[
"5.4.99.60"
],
"kegg.reaction":[
"R05814"
],
"metanetx.reaction":[
"MNXR96840"
],
"rhea":[
"16210",
"16212",
"16211",
"16209"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CPMPS",
"name":"Cyclic pyranopterin monophosphate synthase",
"metabolites":{
"cpmp_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0301 and Gmet_1037) or (Gmet_0337 and Gmet_1037) or (Gmet_2095 and Gmet_1037)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPMPS"
]
},
"annotation":{
"bigg.reaction":[
"CPMPS"
],
"ec-code":[
"4.1.99.18"
],
"metanetx.reaction":[
"MNXR142714"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CPPPGOAN2",
"name":"Oxygen Independent coproporphyrinogen-III oxidase",
"metabolites":{
"amet_c":-2.0,
"co2_c":2.0,
"cpppg3_c":-1.0,
"dad_5_c":2.0,
"fdxo_42_c":-2.0,
"fdxr_42_c":2.0,
"h_c":2.0,
"met__L_c":2.0,
"nadp_c":2.0,
"nadph_c":-2.0,
"pppg9_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3535",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPPPGOAN2"
]
},
"annotation":{
"bigg.reaction":[
"CPPPGOAN2"
],
"metanetx.reaction":[
"MNXR96882"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CRESt2ipp",
"name":"P-cresol transport out via proton antiport (periplasm)",
"metabolites":{
"4crsol_c":-1.0,
"4crsol_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRESt2ipp"
]
},
"annotation":{
"bigg.reaction":[
"CRESt2ipp"
],
"metanetx.reaction":[
"MNXR96887"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CREStex",
"name":"P-cresol transport vis diffusion (extra-organism to periplasm)",
"metabolites":{
"4crsol_e":1.0,
"4crsol_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2127",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"CREStex"
]
},
"annotation":{
"bigg.reaction":[
"CREStex"
],
"biocyc":[
"META:TRANS-RXN0-500"
],
"metanetx.reaction":[
"MNXR96888"
],
"rhea":[
"35071",
"35072",
"35074",
"35073"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CYSS",
"name":"Cysteine synthase",
"metabolites":{
"ac_c":1.0,
"acser_c":-1.0,
"cys__L_c":1.0,
"h2s_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0264 or Gmet_1558 or Gmet_2988",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CYSS"
]
},
"annotation":{
"bigg.reaction":[
"CYSS"
],
"biocyc":[
"META:ACSERLY-RXN"
],
"ec-code":[
"2.5.1.47",
"2.5.1.65"
],
"kegg.reaction":[
"R00897"
],
"metanetx.reaction":[
"MNXR97007"
],
"rhea":[
"14829",
"14831",
"14830",
"14832"
],
"sabiork":[
"1220"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00649"
]
}
},
{
"id":"CYSTL",
"name":"Cystathionine b-lyase",
"metabolites":{
"cyst__L_c":-1.0,
"h2o_c":-1.0,
"hcys__L_c":1.0,
"nh4_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0698 or Gmet_0699",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CYSTL"
]
},
"annotation":{
"bigg.reaction":[
"CYSTL"
],
"ec-code":[
"4.4.1.8"
],
"kegg.reaction":[
"R01286"
],
"metanetx.reaction":[
"MNXR96469"
],
"rhea":[
"13967",
"13965",
"13968",
"13966"
],
"sabiork":[
"1501"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYSTRS",
"name":"Cysteinyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"cys__L_c":-1.0,
"cystrna_c":1.0,
"ppi_c":1.0,
"trnacys_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0057",
"objective_coefficient":-0.0527121983359875,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CYSTRS"
]
},
"annotation":{
"bigg.reaction":[
"CYSTRS"
],
"ec-code":[
"6.1.1.16",
"6.1.1.15"
],
"kegg.reaction":[
"R03650"
],
"metanetx.reaction":[
"MNXR97018"
],
"reactome.reaction":[
"R-HSA-379887",
"R-HSA-380158"
],
"sabiork":[
"405"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06435"
]
}
},
{
"id":"CRO4abcpp",
"name":"Chromate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cro4_c":1.0,
"cro4_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1903 and Gmet_1906 and Gmet_1905 and Gmet_1904",
"objective_coefficient":-0.00856573222959797,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRO4abcpp"
]
},
"annotation":{
"bigg.reaction":[
"CRO4abcpp"
],
"metanetx.reaction":[
"MNXR96912"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_zn2_e",
"name":"Zinc exchange",
"metabolites":{
"zn2_e":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_zn2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_zn2_e"
],
"biocyc":[
"META:RXN0-12"
],
"metanetx.reaction":[
"MNXR105280"
],
"reactome.reaction":[
"R-RNO-442359",
"R-TGU-437085",
"R-TGU-437139",
"R-DRE-442393",
"R-HSA-437084",
"R-PFA-437136",
"R-CFA-442422",
"R-BTA-437139",
"R-SSC-442393",
"R-HSA-437129",
"R-XTR-435366",
"R-RNO-442422",
"R-RNO-437136",
"R-SCE-437085",
"R-DME-442422",
"R-DDI-442422",
"R-MMU-435366",
"R-RNO-442317",
"R-DDI-437136",
"R-CEL-442393",
"R-SSC-437139",
"R-CEL-442422",
"R-ATH-437085",
"R-MMU-437136",
"R-MMU-442317",
"R-DRE-442422",
"R-MMU-437139",
"R-SPO-435366",
"R-DME-437136",
"R-OSA-442393",
"R-XTR-437085",
"R-OSA-442422",
"R-CEL-435366",
"R-DRE-442317",
"R-BTA-442317",
"R-DDI-435366",
"R-SSC-442422",
"R-HSA-442387",
"R-HSA-437139",
"R-SCE-435366",
"R-MMU-437085",
"R-ATH-442422",
"R-HSA-442405",
"R-GGA-435366",
"R-CEL-442317",
"R-SSC-442317",
"R-DRE-442387",
"R-DRE-437085",
"R-MMU-437092",
"R-SCE-442422",
"R-CFA-442393",
"R-BTA-442393",
"R-SSC-437136",
"R-TGU-442422",
"R-BTA-442387",
"R-OSA-437085",
"R-RNO-442393",
"R-SCE-442393",
"R-RNO-437139",
"R-SSC-437085",
"R-XTR-442317",
"R-XTR-442393",
"R-GGA-437136",
"R-SCE-437136",
"R-XTR-437136",
"R-HSA-437085",
"R-ATH-442393",
"R-XTR-437139",
"R-BTA-437085",
"R-GGA-442317",
"R-GGA-437085",
"R-CEL-442387",
"R-SSC-435366",
"R-TGU-442387",
"R-SCE-437139",
"R-CEL-437136",
"R-MMU-442387",
"R-MMU-442422",
"R-BTA-442422",
"R-RNO-435366",
"R-RNO-442387",
"R-CFA-437085",
"R-DME-442317",
"R-HSA-435366",
"R-DRE-437139",
"R-TGU-437136",
"R-TGU-435366",
"R-SCE-442387",
"R-HSA-442422",
"R-ATH-437136",
"R-HSA-442317",
"R-HSA-442393",
"R-CEL-437139",
"R-HSA-442345",
"R-GGA-442387",
"R-CFA-442317",
"R-GGA-442422",
"R-DRE-437136",
"R-MMU-442319",
"R-MMU-442393",
"R-GGA-437139",
"R-OSA-437136",
"R-BTA-435366",
"R-CEL-437085",
"R-XTR-442387",
"R-SSC-442387",
"R-DRE-435366",
"R-DDI-437085",
"R-MMU-437145",
"R-CFA-442387",
"R-SPO-442393",
"R-TGU-442317",
"R-DME-442393",
"R-XTR-442422",
"R-SCE-442317",
"R-SPO-437085",
"R-CFA-435366",
"R-RNO-437085",
"R-CFA-437139",
"R-HSA-435375",
"R-RNO-437094",
"R-CFA-437136",
"R-HSA-437136",
"R-DME-435366"
],
"rhea":[
"29353",
"29351",
"29352",
"29354"
],
"sabiork":[
"13042"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09391",
"rxn09390"
]
}
},
{
"id":"CRO4t3pp",
"name":"Chromate transport out via proton antiport (cytoplasm to periplasm)",
"metabolites":{
"cro4_c":-1.0,
"cro4_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2731 and Gmet_2732",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRO4t3pp"
]
},
"annotation":{
"bigg.reaction":[
"CRO4t3pp"
],
"metanetx.reaction":[
"MNXR96913"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05526"
]
}
},
{
"id":"CRO4tex",
"name":"Cromate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cro4_e":-1.0,
"cro4_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"CRO4tex"
]
},
"annotation":{
"bigg.reaction":[
"CRO4tex"
],
"metanetx.reaction":[
"MNXR96914"
],
"rhea":[
"32819",
"32822",
"32821",
"32820"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CS",
"name":"Citrate synthase",
"metabolites":{
"accoa_c":-1.0,
"cit_c":1.0,
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"oaa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2689",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"CS"
]
},
"annotation":{
"bigg.reaction":[
"CS"
],
"biocyc":[
"META:CITSYN-RXN",
"META:RXN-14905"
],
"ec-code":[
"2.3.3.16",
"2.3.3.1",
"2.3.3.3"
],
"kegg.reaction":[
"R00351"
],
"metanetx.reaction":[
"MNXR96920"
],
"reactome.reaction":[
"R-GGA-373006",
"R-GGA-70975",
"R-CEL-70975",
"R-HSA-70975",
"R-DRE-70975",
"R-MMU-70975",
"R-ATH-70975",
"R-SPO-70975",
"R-OSA-70975",
"R-SCE-70975",
"R-SSC-70975",
"R-DDI-70975",
"R-RNO-70975",
"R-DME-70975",
"R-PFA-70975",
"R-XTR-70975",
"R-CFA-70975",
"R-BTA-70975"
],
"rhea":[
"16847",
"16846",
"16845",
"16848"
],
"sabiork":[
"267"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00256"
]
}
},
{
"id":"CSND",
"name":"Cytosine deaminase",
"metabolites":{
"csn_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0,
"ura_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3524",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CSND"
]
},
"annotation":{
"bigg.reaction":[
"CSND"
],
"biocyc":[
"META:CYTDEAM-RXN"
],
"ec-code":[
"3.5.4.1"
],
"kegg.reaction":[
"R00974"
],
"metanetx.reaction":[
"MNXR96927"
],
"rhea":[
"20605",
"20606",
"20607",
"20608"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00717"
]
}
},
{
"id":"CYTBCYTC",
"name":"Cytochrome b Cytochrome c electron transfer",
"metabolites":{
"ficytC_c":-1.0,
"ficytb_c":1.0,
"focytC_c":1.0,
"focytc_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3091",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"CYTBCYTC"
]
},
"annotation":{
"bigg.reaction":[
"CYTBCYTC"
],
"metanetx.reaction":[
"MNXR138199"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYTBD2pp",
"name":"Cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h_c":-2.0,
"h_p":2.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"o2_c":-0.5
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1929 and Gmet_1930 and Gmet_2633 and Gmet_2634",
"objective_coefficient":-0.00593012231279863,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"CYTBD2pp"
]
},
"annotation":{
"bigg.reaction":[
"CYTBD2pp"
],
"metanetx.reaction":[
"MNXR97032"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08287",
"rxn10806"
]
}
},
{
"id":"CYTBMQOR2pp",
"name":"Cytochrome b Menaquinone oxidoreductase",
"metabolites":{
"ficytb_c":-2.0,
"focytc_c":2.0,
"h_p":2.0,
"mql8_c":-1.0,
"mqn8_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2929",
"objective_coefficient":-0.00197670743759959,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"CYTBMQOR2pp"
]
},
"annotation":{
"bigg.reaction":[
"CYTBMQOR2pp"
],
"metanetx.reaction":[
"MNXR97034"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CYTK1",
"name":"Cytidylate kinase (CMP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cdp_c":1.0,
"cmp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0865",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CYTK1"
]
},
"annotation":{
"bigg.reaction":[
"CYTK1"
],
"biocyc":[
"META:RXN-11832"
],
"ec-code":[
"2.7.4.25",
"2.7.4.14"
],
"kegg.reaction":[
"R00512"
],
"metanetx.reaction":[
"MNXR97047"
],
"rhea":[
"11603",
"11601",
"11602",
"11600"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00364"
]
}
},
{
"id":"CYTK2",
"name":"Cytidylate kinase (dCMP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dcdp_c":1.0,
"dcmp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0865",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"CYTK2"
]
},
"annotation":{
"bigg.reaction":[
"CYTK2"
],
"biocyc":[
"META:RXN-7913"
],
"ec-code":[
"2.7.4.13",
"2.7.4.14",
"2.7.4.25"
],
"kegg.reaction":[
"R01665"
],
"metanetx.reaction":[
"MNXR97053"
],
"rhea":[
"25096",
"25094",
"25097",
"25095"
],
"sabiork":[
"84"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01219"
]
}
},
{
"id":"CYTMQOR3pp",
"name":"Menaquinone cytochrome oxidoreductase (periplasmic) 3 proton translocated / 2e-",
"metabolites":{
"ficytC_c":-2.0,
"focytC_c":2.0,
"h_c":-1.0,
"h_p":3.0,
"mql8_c":-1.0,
"mqn8_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1809 and Gmet_1810 and Gmet_1811) or (Gmet_1922 and Gmet_1923 and Gmet_1924) or (Gmet_0536 and Gmet_0537 and Gmet_0538 and Gmet_0539 and Gmet_0541 and Gmet_3585)",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"CYTMQOR3pp"
]
},
"annotation":{
"bigg.reaction":[
"CYTMQOR3pp"
],
"metanetx.reaction":[
"MNXR138201"
],
"sbo":"SBO:0000185"
}
},
{
"id":"DADK",
"name":"Deoxyadenylate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dadp_c":1.0,
"damp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0647",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DADK"
]
},
"annotation":{
"bigg.reaction":[
"DADK"
],
"biocyc":[
"META:DEOXYADENYLATE-KINASE-RXN"
],
"ec-code":[
"2.7.4.11",
"2.7.4.13",
"2.7.4.3"
],
"kegg.reaction":[
"R01547"
],
"metanetx.reaction":[
"MNXR96117"
],
"reactome.reaction":[
"R-DME-74220",
"R-BTA-74220",
"R-MMU-110141",
"R-PFA-74220",
"R-TGU-110141",
"R-SCE-74220",
"R-HSA-110141",
"R-XTR-110141",
"R-CFA-110141",
"R-CEL-110141",
"R-HSA-74220",
"R-BTA-110141",
"R-CFA-74220",
"R-SSC-110141",
"R-CEL-74220",
"R-DRE-74220",
"R-SCE-110141",
"R-DRE-110141",
"R-GGA-110141",
"R-RNO-110141",
"R-SSC-74220",
"R-DME-110141",
"R-MMU-74220",
"R-PFA-110141",
"R-XTR-74220",
"R-TGU-74220",
"R-GGA-74220",
"R-RNO-74220"
],
"rhea":[
"23100",
"23103",
"23102",
"23101"
],
"sabiork":[
"314"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01127"
]
}
},
{
"id":"DADNC",
"name":"Diadenylate cyclase",
"metabolites":{
"atp_c":-2.0,
"cdiamp_c":1.0,
"ppi_c":2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1168 or Gmet_1888",
"objective_coefficient":-0.319567702411923,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DADNC"
]
},
"annotation":{
"bigg.reaction":[
"DADNC"
],
"metanetx.reaction":[
"MNXR97078"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DAGK120",
"name":"Diacylglycerol kinase (n-C12:0)",
"metabolites":{
"12dgr120_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa120_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2369 or Gmet_2741",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK120"
]
},
"annotation":{
"bigg.reaction":[
"DAGK120"
],
"metanetx.reaction":[
"MNXR97091"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CSPMDDC",
"name":"Carboxynorspermidine decarboxylase",
"metabolites":{
"co2_c":1.0,
"cspmd_c":-1.0,
"h_c":-1.0,
"spmd_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0903",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CSPMDDC"
]
},
"annotation":{
"bigg.reaction":[
"CSPMDDC"
],
"biocyc":[
"META:RXN-11564"
],
"ec-code":[
"4.1.1",
"4.1.1.96"
],
"kegg.reaction":[
"R09081"
],
"metanetx.reaction":[
"MNXR96935"
],
"rhea":[
"34095",
"34098",
"34096",
"34097"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CSPMDDH",
"name":"Carboxyspermidine dehydrogenase",
"metabolites":{
"aspsa_c":-1.0,
"cspmd_c":1.0,
"h2o_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"ptrc_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0902",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"CSPMDDH"
]
},
"annotation":{
"bigg.reaction":[
"CSPMDDH"
],
"biocyc":[
"META:RXN-11566"
],
"ec-code":[
"1.5.1.43"
],
"kegg.reaction":[
"R09079"
],
"metanetx.reaction":[
"MNXR96936"
],
"rhea":[
"34114",
"34112",
"34111",
"34113"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CTECOAI6",
"name":"3-cis-2-trans-enoyl-CoA isomerase",
"metabolites":{
"td2coa_c":1.0,
"tdecoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2071 or Gmet_1572 or Gmet_2207 or Gmet_3305 or Gmet_2212 or Gmet_2195 or Gmet_3284 or Gmet_1575 or Gmet_2204 or Gmet_2196 or Gmet_2224 or Gmet_2057",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"CTECOAI6"
]
},
"annotation":{
"bigg.reaction":[
"CTECOAI6"
],
"ec-code":[
"5.3.3.8"
],
"metanetx.reaction":[
"MNXR96940"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHFR",
"name":"Dihydrofolate reductase",
"metabolites":{
"dhf_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"thf_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2947",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHFR"
]
},
"annotation":{
"bigg.reaction":[
"DHFR"
],
"ec-code":[
"1.5.1.3"
],
"kegg.reaction":[
"R00939"
],
"metanetx.reaction":[
"MNXR97401"
],
"reactome.reaction":[
"R-SCE-197972",
"R-HSA-197972",
"R-RNO-197972",
"R-CEL-197972",
"R-TGU-197972",
"R-XTR-197972",
"R-SPO-197972",
"R-SSC-197972",
"R-CFA-197972",
"R-GGA-197972",
"R-BTA-197972",
"R-DRE-197972",
"R-DDI-197972",
"R-MMU-197972",
"R-DME-197972"
],
"rhea":[
"15010",
"15009",
"15012",
"15011"
],
"sabiork":[
"100"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DAGK140",
"name":"Diacylglycerol kinase (n-C14:0)",
"metabolites":{
"12dgr140_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa140_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2369 or Gmet_2741",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK140"
]
},
"annotation":{
"bigg.reaction":[
"DAGK140"
],
"metanetx.reaction":[
"MNXR97092"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DAGK141",
"name":"Diacylglycerol kinase (n-C14:1)",
"metabolites":{
"12dgr141_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa141_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2369 or Gmet_2741",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK141"
]
},
"annotation":{
"bigg.reaction":[
"DAGK141"
],
"metanetx.reaction":[
"MNXR97093"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DAGK160",
"name":"Diacylglycerol kinase (n-C16:0)",
"metabolites":{
"12dgr160_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa160_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2369 or Gmet_2741",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK160"
]
},
"annotation":{
"bigg.reaction":[
"DAGK160"
],
"ec-code":[
"2.7.1.107"
],
"metanetx.reaction":[
"MNXR97094"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHFS",
"name":"Dihydrofolate synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dhf_c":1.0,
"dhpt_c":-1.0,
"glu__L_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2475",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHFS"
]
},
"annotation":{
"bigg.reaction":[
"DHFS"
],
"biocyc":[
"META:DIHYDROFOLATESYNTH-RXN"
],
"ec-code":[
"6.3.2.12",
"6.3.2.17"
],
"kegg.reaction":[
"R02237"
],
"metanetx.reaction":[
"MNXR140043"
],
"rhea":[
"23585",
"23587",
"23584",
"23586"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01603"
]
}
},
{
"id":"DAGK161",
"name":"Diacylglycerol kinase (n-C16:1)",
"metabolites":{
"12dgr161_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa161_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2369 or Gmet_2741",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK161"
]
},
"annotation":{
"bigg.reaction":[
"DAGK161"
],
"metanetx.reaction":[
"MNXR97097"
],
"sbo":"SBO:0000176"
}
},
{
"id":"13PPDH",
"name":"1,3-propanediol dehydrogenase",
"metabolites":{
"13ppd_c":1.0,
"3hppnl_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1046 or Gmet_1053",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"_13PPDHr"
]
},
"annotation":{
"bigg.reaction":[
"13PPDH"
],
"biocyc":[
"META:13-PROPANEDIOL-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.202"
],
"kegg.reaction":[
"R03119"
],
"metanetx.reaction":[
"MNXR94691"
],
"rhea":[
"23189",
"23188",
"23191",
"23190"
],
"sabiork":[
"2955"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02235"
]
}
},
{
"id":"DAGK180",
"name":"Diacylglycerol kinase (n-C18:0)",
"metabolites":{
"12dgr180_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa180_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2369 or Gmet_2741",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK180"
]
},
"annotation":{
"bigg.reaction":[
"DAGK180"
],
"metanetx.reaction":[
"MNXR97098"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DAGK181",
"name":"Diacylglycerol kinase (n-C18:1)",
"metabolites":{
"12dgr181_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa181_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2369 or Gmet_2741",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK181"
]
},
"annotation":{
"bigg.reaction":[
"DAGK181"
],
"metanetx.reaction":[
"MNXR97100"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DALAt2pp",
"name":"D-alanine transport in via proton symport (periplasm)",
"metabolites":{
"ala__D_c":1.0,
"ala__D_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"DALAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DALAt2pp"
],
"biocyc":[
"META:TRANS-RXN-62A"
],
"metanetx.reaction":[
"MNXR97135"
],
"rhea":[
"28903",
"28904",
"28906",
"28905"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05494",
"rxn08301"
]
}
},
{
"id":"DHNAOT4",
"name":"1,4-dihydroxy-2-naphthoate octaprenyltransferase",
"metabolites":{
"2dmmql8_c":1.0,
"co2_c":1.0,
"dhna_c":-1.0,
"h_c":-1.0,
"octdp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3393 and Gmet_3392",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHNAOT4"
]
},
"annotation":{
"bigg.reaction":[
"DHNAOT4"
],
"biocyc":[
"META:DMK-RXN"
],
"ec-code":[
"2.5.1.74"
],
"metanetx.reaction":[
"MNXR97408"
],
"rhea":[
"30101",
"30100",
"30099",
"30102"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08333"
]
}
},
{
"id":"DHNAS",
"name":"1,4-dihydroxy-6-naphthoate synthase",
"metabolites":{
"cdhxfut_c":-1.0,
"dhna_c":1.0,
"glyald_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3380",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHNAS"
]
},
"annotation":{
"bigg.reaction":[
"DHNAS"
],
"metanetx.reaction":[
"MNXR97411"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHNPA2r",
"name":"Dihydroneopterin aldolase reversible",
"metabolites":{
"6hmhpt_c":1.0,
"dhnpt_c":-1.0,
"gcald_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0497",
"subsystem":"Folate Metabolism",
"notes":{
"original_bigg_ids":[
"DHNPA2r"
]
},
"annotation":{
"bigg.reaction":[
"DHNPA2r"
],
"biocyc":[
"META:H2NEOPTERINALDOL-RXN"
],
"ec-code":[
"4.1.2.25"
],
"kegg.reaction":[
"R03504"
],
"metanetx.reaction":[
"MNXR125603"
],
"rhea":[
"10541",
"10540",
"10542",
"10543"
],
"sabiork":[
"3293"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02504"
]
}
},
{
"id":"2AGPEAT120",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C12:0)",
"metabolites":{
"2agpe120_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ddca_c":-1.0,
"pe120_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"objective_coefficient":-0.162090009883159,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPEAT120"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT120"
],
"metanetx.reaction":[
"MNXR94757"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHORD5",
"name":"Dihydroorotic acid (menaquinone-8)",
"metabolites":{
"dhor__S_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"orot_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1841 and Gmet_1842",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DHORD5"
]
},
"annotation":{
"bigg.reaction":[
"DHORD5"
],
"metanetx.reaction":[
"MNXR97421"
],
"rhea":[
"29200",
"29201",
"29199",
"29202"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08336"
]
}
},
{
"id":"DHORTS",
"name":"Dihydroorotase",
"metabolites":{
"cbasp_c":1.0,
"dhor__S_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1770",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DHORTS"
]
},
"annotation":{
"bigg.reaction":[
"DHORTS"
],
"biocyc":[
"META:DIHYDROOROT-RXN"
],
"ec-code":[
"3.5.2.3"
],
"kegg.reaction":[
"R01993"
],
"metanetx.reaction":[
"MNXR97428"
],
"reactome.reaction":[
"R-CFA-73571",
"R-BTA-73571",
"R-SCE-73571",
"R-MMU-73571",
"R-GGA-73571",
"R-CEL-73571",
"R-OSA-73571",
"R-SPO-73571",
"R-TGU-73571",
"R-SSC-73571",
"R-RNO-73571",
"R-GGA-419465",
"R-HSA-73571",
"R-DDI-73571",
"R-DRE-73571",
"R-XTR-73571",
"R-DME-73571",
"R-ATH-73571",
"R-PFA-73571"
],
"rhea":[
"24296",
"24298",
"24299",
"24297"
],
"sabiork":[
"399"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01465"
]
}
},
{
"id":"DAPDC",
"name":"Diaminopimelate decarboxylase",
"metabolites":{
"26dap__M_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"lys__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0219",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DAPDC"
]
},
"annotation":{
"bigg.reaction":[
"DAPDC"
],
"biocyc":[
"META:DIAMINOPIMDECARB-RXN"
],
"ec-code":[
"4.1.1.20"
],
"kegg.reaction":[
"R00451"
],
"metanetx.reaction":[
"MNXR97141"
],
"rhea":[
"15101",
"15104",
"15102",
"15103"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00313"
]
}
},
{
"id":"DAPE",
"name":"Diaminopimelate epimerase",
"metabolites":{
"26dap_LL_c":-1.0,
"26dap__M_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2992",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DAPE"
]
},
"annotation":{
"bigg.reaction":[
"DAPE"
],
"biocyc":[
"META:DIAMINOPIMEPIM-RXN"
],
"ec-code":[
"5.1.1.7"
],
"kegg.reaction":[
"R02735"
],
"metanetx.reaction":[
"MNXR97143"
],
"rhea":[
"15396",
"15395",
"15393",
"15394"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01974"
]
}
},
{
"id":"DASYN120",
"name":"CDP-diacylglycerol synthetase (n-C12:0)",
"metabolites":{
"cdpdddecg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa120_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1255",
"objective_coefficient":-0.378868925539906,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN120"
]
},
"annotation":{
"bigg.reaction":[
"DASYN120"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97154"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08306"
]
}
},
{
"id":"DHPPDA2",
"name":"Diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp)",
"metabolites":{
"25drapp_c":-1.0,
"5apru_c":1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1624",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHPPDA2"
]
},
"annotation":{
"bigg.reaction":[
"DHPPDA2"
],
"biocyc":[
"META:RIBOFLAVINSYNDEAM-RXN"
],
"ec-code":[
"3.5.4.26"
],
"kegg.reaction":[
"R03459"
],
"metanetx.reaction":[
"MNXR97435"
],
"rhea":[
"21871",
"21869",
"21868",
"21870"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHPS2",
"name":"Dihydropteroate synthase",
"metabolites":{
"4abz_c":-1.0,
"6hmhptpp_c":-1.0,
"dhpt_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1889",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHPS2"
]
},
"annotation":{
"bigg.reaction":[
"DHPS2"
],
"biocyc":[
"META:H2PTEROATESYNTH-RXN"
],
"ec-code":[
"2.5.1.15"
],
"kegg.reaction":[
"R03067"
],
"metanetx.reaction":[
"MNXR140085"
],
"rhea":[
"19950",
"19949",
"19952",
"19951"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn12954"
]
}
},
{
"id":"DHQTi",
"name":"3-dehydroquinate dehydratase, irreversible",
"metabolites":{
"3dhq_c":-1.0,
"3dhsk_c":1.0,
"h2o_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0981",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DHQD"
]
},
"annotation":{
"bigg.reaction":[
"DHQTi"
],
"biocyc":[
"META:3-DEHYDROQUINATE-DEHYDRATASE-RXN"
],
"ec-code":[
"4.2.1.10"
],
"kegg.reaction":[
"R03084"
],
"metanetx.reaction":[
"MNXR97449"
],
"rhea":[
"21099",
"21097",
"21096",
"21098"
],
"sabiork":[
"2924"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02213"
]
}
},
{
"id":"DHQS",
"name":"3-dehydroquinate synthase",
"metabolites":{
"2dda7p_c":-1.0,
"3dhq_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0978",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DHQS"
]
},
"annotation":{
"bigg.reaction":[
"DHQS"
],
"biocyc":[
"META:3-DEHYDROQUINATE-SYNTHASE-RXN"
],
"ec-code":[
"4.2.3.4"
],
"kegg.reaction":[
"R03083"
],
"metanetx.reaction":[
"MNXR97447"
],
"rhea":[
"21968",
"21970",
"21971",
"21969"
],
"sabiork":[
"2923"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02212"
]
}
},
{
"id":"DASYN140",
"name":"CDP-diacylglycerol synthetase (n-C14:0)",
"metabolites":{
"cdpdtdecg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa140_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1255",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN140"
]
},
"annotation":{
"bigg.reaction":[
"DASYN140"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97155"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08307"
]
}
},
{
"id":"DASYN141",
"name":"CDP-diacylglycerol synthetase (n-C14:1)",
"metabolites":{
"cdpdtdec7eg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa141_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1255",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN141"
]
},
"annotation":{
"bigg.reaction":[
"DASYN141"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97156"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08308"
]
}
},
{
"id":"DASYN160",
"name":"CDP-diacylglycerol synthetase (n-C16:0)",
"metabolites":{
"cdpdhdecg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa160_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1255",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN160"
]
},
"annotation":{
"bigg.reaction":[
"DASYN160"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97157"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08309"
]
}
},
{
"id":"DASYN161",
"name":"CDP-diacylglycerol synthetase (n-C16:1)",
"metabolites":{
"cdpdhdec9eg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa161_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1255",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN161"
]
},
"annotation":{
"bigg.reaction":[
"DASYN161"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97159"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08310"
]
}
},
{
"id":"DASYN180",
"name":"CDP-diacylglycerol synthetase (n-C18:0)",
"metabolites":{
"cdpdodecg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa180_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1255",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN180"
]
},
"annotation":{
"bigg.reaction":[
"DASYN180"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97160"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08311"
]
}
},
{
"id":"DHXFUTC",
"name":"Dehypoxanthinylfutalosine cyclase",
"metabolites":{
"amet_c":-2.0,
"cdhxfut_c":1.0,
"dad_5_c":2.0,
"dhxfut_c":-1.0,
"flxr_c":-2.0,
"flxso_c":2.0,
"met__L_c":2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3390 or Gmet_3391",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHXFUTC"
]
},
"annotation":{
"bigg.reaction":[
"DHXFUTC"
],
"metanetx.reaction":[
"MNXR97454"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DLTO",
"name":"Succinyl:D-lactate coenzyme A transferase",
"metabolites":{
"lac__D_c":-1.0,
"laccoa_c":1.0,
"succ_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3044 or Gmet_1730",
"subsystem":"Anaplerotic Pathway",
"notes":{
"original_bigg_ids":[
"DLTO"
]
},
"annotation":{
"bigg.reaction":[
"DLTO"
],
"metanetx.reaction":[
"MNXR97505"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DASYN181",
"name":"CDP-diacylglycerol synthetase (n-C18:1)",
"metabolites":{
"cdpdodec11eg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa181_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1255",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN181"
]
},
"annotation":{
"bigg.reaction":[
"DASYN181"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97161"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08312"
]
}
},
{
"id":"DMATT",
"name":"Dimethylallyltranstransferase",
"metabolites":{
"dmpp_c":-1.0,
"grdp_c":1.0,
"ipdp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1935 or Gmet_2455",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DMATT"
]
},
"annotation":{
"bigg.reaction":[
"DMATT"
],
"biocyc":[
"META:GPPSYN-RXN"
],
"ec-code":[
"2.5.1.1"
],
"kegg.reaction":[
"R01658"
],
"metanetx.reaction":[
"MNXR97512"
],
"reactome.reaction":[
"R-HSA-191322",
"R-CFA-191322",
"R-CEL-191322",
"R-XTR-191322",
"R-GGA-191322",
"R-ATH-191322",
"R-DME-191322",
"R-SPO-191322",
"R-SSC-191322",
"R-DDI-191322",
"R-BTA-191322",
"R-MMU-191322",
"R-DRE-191322",
"R-PFA-191322",
"R-RNO-191322",
"R-TGU-191322",
"R-OSA-191322",
"R-SCE-191322"
],
"rhea":[
"22410",
"22409",
"22411",
"22408"
],
"sabiork":[
"1793"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01213"
]
}
},
{
"id":"2AGPEAT140",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:0)",
"metabolites":{
"2agpe140_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"pe140_c":1.0,
"ppi_c":1.0,
"ttdca_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPEAT140"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT140"
],
"metanetx.reaction":[
"MNXR94758"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DMPPS",
"name":"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)",
"metabolites":{
"dmpp_c":1.0,
"h2mb4p_c":-1.0,
"h2o_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0866",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DMPPS"
]
},
"annotation":{
"bigg.reaction":[
"DMPPS"
],
"ec-code":[
"1.17.1.2"
],
"metanetx.reaction":[
"MNXR97524"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08352"
]
}
},
{
"id":"DB4PS",
"name":"3,4-Dihydroxy-2-butanone-4-phosphate synthase",
"metabolites":{
"db4p_c":1.0,
"for_c":1.0,
"h_c":1.0,
"ru5p__D_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1626",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DB4PS"
]
},
"annotation":{
"bigg.reaction":[
"DB4PS"
],
"ec-code":[
"4.1.99.12"
],
"kegg.reaction":[
"R07281"
],
"metanetx.reaction":[
"MNXR97178"
],
"sabiork":[
"9052"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05040"
]
}
},
{
"id":"DBTS",
"name":"Dethiobiotin synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"co2_c":-1.0,
"dann_c":-1.0,
"dtbt_c":1.0,
"h_c":3.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1581",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DBTS"
]
},
"annotation":{
"bigg.reaction":[
"DBTS"
],
"biocyc":[
"META:DETHIOBIOTIN-SYN-RXN"
],
"ec-code":[
"6.3.3.3"
],
"kegg.reaction":[
"R03182"
],
"metanetx.reaction":[
"MNXR97180"
],
"rhea":[
"15807",
"15808",
"15806",
"15805"
],
"sabiork":[
"3011"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02277"
]
}
},
{
"id":"DNMPPA",
"name":"Dihydroneopterin monophosphate dephosphorylase",
"metabolites":{
"dhnpt_c":1.0,
"dhpmp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DNMPPA"
]
},
"annotation":{
"bigg.reaction":[
"DNMPPA"
],
"biocyc":[
"META:DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN"
],
"ec-code":[
"3.6.1",
"3.6.1.-"
],
"kegg.reaction":[
"R04621"
],
"metanetx.reaction":[
"MNXR126238"
],
"rhea":[
"25308",
"25309",
"25306",
"25307"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03168"
]
}
},
{
"id":"2AGPEAT141",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:1)",
"metabolites":{
"2agpe141_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"pe141_c":1.0,
"ppi_c":1.0,
"ttdcea_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"objective_coefficient":-0.143640740465564,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPEAT141"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT141"
],
"metanetx.reaction":[
"MNXR94759"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DNTPPA",
"name":"Dihydroneopterin triphosphate pyrophosphatase",
"metabolites":{
"ahdt_c":-1.0,
"dhpmp_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1790 or Gmet_1170 or Gmet_0048",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DNTPPA"
]
},
"annotation":{
"bigg.reaction":[
"DNTPPA"
],
"biocyc":[
"META:H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN"
],
"ec-code":[
"3.6.1.67"
],
"kegg.reaction":[
"R04638"
],
"metanetx.reaction":[
"MNXR97680"
],
"rhea":[
"25302",
"25305",
"25303",
"25304"
],
"sabiork":[
"10428"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03173"
]
}
},
{
"id":"DCMPDA",
"name":"DCMP deaminase",
"metabolites":{
"dcmp_c":-1.0,
"dump_c":1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1622 or Gmet_0239",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DCMPDAi"
]
},
"annotation":{
"bigg.reaction":[
"DCMPDA"
],
"biocyc":[
"META:DCMP-DEAMINASE-RXN"
],
"ec-code":[
"3.5.4.12"
],
"kegg.reaction":[
"R01663"
],
"metanetx.reaction":[
"MNXR97185"
],
"reactome.reaction":[
"R-OSA-73596",
"R-SSC-73596",
"R-GGA-73596",
"R-TGU-73596",
"R-ATH-73596",
"R-SCE-73596",
"R-CEL-73596",
"R-BTA-73596",
"R-DME-73596",
"R-DRE-73596",
"R-SPO-73596",
"R-CFA-73596",
"R-XTR-73596",
"R-RNO-73596",
"R-HSA-73596",
"R-MMU-73596"
],
"rhea":[
"22925",
"22927",
"22926",
"22924"
],
"sabiork":[
"363"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01217"
]
}
},
{
"id":"2AGPEAT160",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:0)",
"metabolites":{
"2agpe160_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdca_c":-1.0,
"pe160_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPEAT160"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT160"
],
"ec-code":[
"2.3.1.40"
],
"metanetx.reaction":[
"MNXR94760"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07949"
]
}
},
{
"id":"DDCAtexi",
"name":"Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ddca_e":-1.0,
"ddca_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1535",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"DDCAtexi"
]
},
"annotation":{
"bigg.reaction":[
"DDCAtexi"
],
"metanetx.reaction":[
"MNXR97211"
],
"sbo":"SBO:0000185"
}
},
{
"id":"DPCOAK",
"name":"Dephospho-CoA kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"coa_c":1.0,
"dpcoa_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3026",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DPCOAK"
]
},
"annotation":{
"bigg.reaction":[
"DPCOAK"
],
"biocyc":[
"META:DEPHOSPHOCOAKIN-RXN"
],
"ec-code":[
"2.7.1.24"
],
"kegg.reaction":[
"R00130"
],
"metanetx.reaction":[
"MNXR97762"
],
"reactome.reaction":[
"R-XTR-196773",
"R-SSC-196773",
"R-RNO-196773",
"R-CFA-196773",
"R-DDI-196773",
"R-CEL-196773",
"R-GGA-196773",
"R-MMU-196773",
"R-OSA-196773",
"R-PFA-196773",
"R-SCE-196773",
"R-DRE-196773",
"R-TGU-196773",
"R-ATH-196773",
"R-DME-196773",
"R-HSA-196773",
"R-BTA-196773"
],
"rhea":[
"18248",
"18245",
"18247",
"18246"
],
"sabiork":[
"48"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00100"
]
}
},
{
"id":"DPLPTAT",
"name":"Diploptene adenosyltransferase and reductase",
"metabolites":{
"ahop_c":1.0,
"amet_c":-1.0,
"dptne_c":-1.0,
"flxr_c":-2.0,
"flxso_c":2.0,
"h_c":-1.0,
"met__L_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2823",
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"DPLPTAT"
]
},
"annotation":{
"bigg.reaction":[
"DPLPTAT"
],
"metanetx.reaction":[
"MNXR97775"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DDPA",
"name":"3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase",
"metabolites":{
"2dda7p_c":1.0,
"e4p_c":-1.0,
"h2o_c":-1.0,
"pep_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0024 or Gmet_0346 or Gmet_2375",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DDPA"
]
},
"annotation":{
"bigg.reaction":[
"DDPA"
],
"biocyc":[
"META:DAHPSYN-RXN"
],
"ec-code":[
"2.5.1.54"
],
"kegg.reaction":[
"R01826"
],
"metanetx.reaction":[
"MNXR97218"
],
"reactome.reaction":[
"R-MTU-964912"
],
"rhea":[
"14718",
"14719",
"14717",
"14720"
],
"sabiork":[
"1910"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01332"
]
}
},
{
"id":"2AGPEAT161",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:1)",
"metabolites":{
"2agpe161_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdcea_c":-1.0,
"pe161_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPEAT161"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT161"
],
"metanetx.reaction":[
"MNXR94761"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DGK1",
"name":"Deoxyguanylate kinase (dGMP:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dgdp_c":1.0,
"dgmp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2327",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DGK1"
]
},
"annotation":{
"bigg.reaction":[
"DGK1"
],
"biocyc":[
"META:GMKALT-RXN"
],
"ec-code":[
"2.7.4.13",
"2.7.4.12",
"2.7.4.8"
],
"kegg.reaction":[
"R02090"
],
"metanetx.reaction":[
"MNXR97320"
],
"reactome.reaction":[
"R-BTA-110133",
"R-SCE-73788",
"R-XTR-110133",
"R-SCE-110133",
"R-RNO-73788",
"R-HSA-110133",
"R-DRE-110133",
"R-SSC-73788",
"R-GGA-110133",
"R-GGA-73788",
"R-DME-110133",
"R-CFA-73788",
"R-SPO-110133",
"R-BTA-73788",
"R-RNO-110133",
"R-DDI-110133",
"R-MMU-73788",
"R-DDI-73788",
"R-MMU-110133",
"R-TGU-73788",
"R-DME-73788",
"R-CFA-110133",
"R-CEL-110133",
"R-DRE-73788",
"R-PFA-73788",
"R-HSA-73788",
"R-XTR-73788",
"R-CEL-73788",
"R-TGU-110133",
"R-PFA-110133",
"R-SPO-73788",
"R-SSC-110133"
],
"rhea":[
"12697",
"12699",
"12698",
"12700"
],
"sabiork":[
"303"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01509"
]
}
},
{
"id":"DPR",
"name":"2-dehydropantoate 2-reductase",
"metabolites":{
"2dhp_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"pant__R_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2643",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DPR"
]
},
"annotation":{
"bigg.reaction":[
"DPR"
],
"biocyc":[
"META:2-DEHYDROPANTOATE-REDUCT-RXN"
],
"ec-code":[
"1.1.1.169"
],
"kegg.reaction":[
"R02472"
],
"metanetx.reaction":[
"MNXR97779"
],
"rhea":[
"16233",
"16234",
"16235",
"16236"
],
"sabiork":[
"2405"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01790"
]
}
},
{
"id":"2AGPEAT180",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:0)",
"metabolites":{
"2agpe180_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdca_c":-1.0,
"pe180_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"objective_coefficient":-0.197670743759951,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPEAT180"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT180"
],
"ec-code":[
"2.3.1.40"
],
"metanetx.reaction":[
"MNXR94762"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07951"
]
}
},
{
"id":"DTMPK",
"name":"DTMP kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dtdp_c":1.0,
"dtmp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2318 or Gmet_3250",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DTMPK"
]
},
"annotation":{
"bigg.reaction":[
"DTMPK"
],
"biocyc":[
"META:DTMPKI-RXN"
],
"ec-code":[
"2.7.4.13",
"2.7.4.12",
"2.7.4.9"
],
"kegg.reaction":[
"R02094"
],
"metanetx.reaction":[
"MNXR97804"
],
"rhea":[
"13520",
"13518",
"13517",
"13519"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01513"
]
}
},
{
"id":"DGUNC",
"name":"Diguanylate cyclase",
"metabolites":{
"cdigmp_c":1.0,
"gtp_c":-2.0,
"ppi_c":2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0043 or Gmet_0049 or Gmet_0069 or Gmet_0773 or Gmet_0840 or Gmet_1298 or Gmet_1706 or Gmet_1914 or Gmet_1917 or Gmet_2425 or Gmet_2721 or Gmet_2982 or Gmet_0700 or Gmet_0782 or Gmet_0957 or Gmet_0987 or Gmet_2629 or Gmet_3085",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DGUNC"
]
},
"annotation":{
"bigg.reaction":[
"DGUNC"
],
"metanetx.reaction":[
"MNXR97353"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHAD1",
"name":"Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)",
"metabolites":{
"23dhmb_c":-1.0,
"3mob_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1259",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DHAD1"
]
},
"annotation":{
"bigg.reaction":[
"DHAD1"
],
"biocyc":[
"META:DIHYDROXYISOVALDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.9"
],
"kegg.reaction":[
"R04441"
],
"metanetx.reaction":[
"MNXR97358"
],
"rhea":[
"24810",
"24811",
"24809",
"24812"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHAD2",
"name":"Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)",
"metabolites":{
"23dhmp_c":-1.0,
"3mop_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1259",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DHAD2"
]
},
"annotation":{
"bigg.reaction":[
"DHAD2"
],
"biocyc":[
"META:DIHYDROXYMETVALDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.9"
],
"kegg.reaction":[
"R05070"
],
"metanetx.reaction":[
"MNXR97359"
],
"rhea":[
"27694",
"27696",
"27697",
"27695"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHDPRy",
"name":"Dihydrodipicolinate reductase (NADPH)",
"metabolites":{
"23dhdp_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"thdp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0212",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DHDPRy"
]
},
"annotation":{
"bigg.reaction":[
"DHDPRy"
],
"ec-code":[
"1.3.1.26"
],
"metanetx.reaction":[
"MNXR134418"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02929"
]
}
},
{
"id":"DHDPS",
"name":"Dihydrodipicolinate synthase",
"metabolites":{
"23dhdp_c":1.0,
"aspsa_c":-1.0,
"h2o_c":2.0,
"h_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0211",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"DHDPS"
]
},
"annotation":{
"bigg.reaction":[
"DHDPS"
],
"metanetx.reaction":[
"MNXR125801"
],
"rhea":[
"14846",
"14848",
"14847",
"14845"
],
"sabiork":[
"2256"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01644"
]
}
},
{
"id":"DUTPDP",
"name":"DUTP diphosphatase",
"metabolites":{
"dump_c":1.0,
"dutp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1593",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"DUTPDP"
]
},
"annotation":{
"bigg.reaction":[
"DUTPDP"
],
"biocyc":[
"META:DUTP-PYROP-RXN"
],
"ec-code":[
"3.6.1.-",
"3.6.1.23",
"3.6.1.9"
],
"kegg.reaction":[
"R02100"
],
"metanetx.reaction":[
"MNXR97822"
],
"reactome.reaction":[
"R-SSC-73666",
"R-CEL-73666",
"R-ATH-73666",
"R-OSA-73666",
"R-BTA-73666",
"R-HSA-73666",
"R-DME-73666",
"R-GGA-73666",
"R-DRE-73666",
"R-SPO-73666",
"R-MMU-73666",
"R-CFA-73666",
"R-DDI-73666",
"R-RNO-73666",
"R-SCE-73666",
"R-TGU-73666"
],
"rhea":[
"10251",
"10249",
"10250",
"10248"
],
"sabiork":[
"365"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01519"
]
}
},
{
"id":"DXPRIi",
"name":"1-deoxy-D-xylulose reductoisomerase",
"metabolites":{
"2me4p_c":1.0,
"dxyl5p_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1256",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DXPRIi"
]
},
"annotation":{
"bigg.reaction":[
"DXPRIi"
],
"biocyc":[
"META:DXPREDISOM-RXN"
],
"ec-code":[
"1.1.1.267"
],
"kegg.reaction":[
"R05688"
],
"metanetx.reaction":[
"MNXR97830"
],
"rhea":[
"13720",
"13717",
"13718",
"13719"
],
"sabiork":[
"5284"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03958"
]
}
},
{
"id":"DXPS",
"name":"1-deoxy-D-xylulose 5-phosphate synthase",
"metabolites":{
"co2_c":1.0,
"dxyl5p_c":1.0,
"g3p_c":-1.0,
"h_c":-1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1934 or Gmet_2822",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"DXPS"
]
},
"annotation":{
"bigg.reaction":[
"DXPS"
],
"biocyc":[
"META:DXS-RXN"
],
"ec-code":[
"2.2.1.7"
],
"kegg.reaction":[
"R05636"
],
"metanetx.reaction":[
"MNXR97831"
],
"rhea":[
"12605",
"12607",
"12608",
"12606"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03909"
]
}
},
{
"id":"E4PD",
"name":"Erythrose 4-phosphate dehydrogenase",
"metabolites":{
"4per_c":1.0,
"e4p_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1946",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"E4PD"
]
},
"annotation":{
"bigg.reaction":[
"E4PD"
],
"biocyc":[
"META:ERYTH4PDEHYDROG-RXN"
],
"ec-code":[
"1.2.1.72"
],
"kegg.reaction":[
"R01825"
],
"metanetx.reaction":[
"MNXR97842"
],
"rhea":[
"12058",
"12057",
"12059",
"12056"
],
"sabiork":[
"1909"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01331"
]
}
},
{
"id":"EAR100x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C10:0)",
"metabolites":{
"dcaACP_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"tdec2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR100x"
]
},
"annotation":{
"bigg.reaction":[
"EAR100x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97845"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR100y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C10:0)",
"metabolites":{
"dcaACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"tdec2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR100y"
]
},
"annotation":{
"bigg.reaction":[
"EAR100y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97846"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPEAT181",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:1)",
"metabolites":{
"2agpe181_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdcea_c":-1.0,
"pe181_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPEAT181"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT181"
],
"metanetx.reaction":[
"MNXR94763"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR120x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:0)",
"metabolites":{
"ddcaACP_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"tddec2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR120x"
]
},
"annotation":{
"bigg.reaction":[
"EAR120x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97847"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR120y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:0)",
"metabolites":{
"ddcaACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"tddec2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR120y"
]
},
"annotation":{
"bigg.reaction":[
"EAR120y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97848"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR121x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1)",
"metabolites":{
"cddec5eACP_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"t3c5ddeceACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.00197670743759915,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR121x"
]
},
"annotation":{
"bigg.reaction":[
"EAR121x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97849"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR121y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:1)",
"metabolites":{
"cddec5eACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"t3c5ddeceACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.00197670743759915,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR121y"
]
},
"annotation":{
"bigg.reaction":[
"EAR121y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97850"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ECOAH5",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxydodecanoyl-CoA)",
"metabolites":{
"3hddcoa_c":-1.0,
"dd2coa_c":1.0,
"h2o_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2071 or Gmet_2196 or Gmet_2224 or Gmet_2057 or Gmet_1572 or Gmet_2207 or Gmet_3305 or Gmet_2212 or Gmet_2195 or Gmet_3284 or Gmet_1575 or Gmet_2204",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH5"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH5"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04170"
],
"metanetx.reaction":[
"MNXR97890"
],
"reactome.reaction":[
"R-DDI-77256",
"R-BTA-77256",
"R-CEL-77256",
"R-CFA-77256",
"R-DME-77256",
"R-DRE-77256",
"R-RNO-77256",
"R-GGA-77256",
"R-MMU-77256",
"R-TGU-77256",
"R-XTR-77256",
"R-HSA-77256",
"R-SCE-77256",
"R-SSC-77256"
],
"rhea":[
"31078",
"31075",
"31077",
"31076"
],
"sabiork":[
"3890"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02911"
]
}
},
{
"id":"ECOAH6",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxytetradecanoyl-CoA)",
"metabolites":{
"3htdcoa_c":-1.0,
"h2o_c":1.0,
"td2coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2204 or Gmet_2196 or Gmet_1572 or Gmet_3284 or Gmet_2071 or Gmet_2207 or Gmet_2195 or Gmet_2212 or Gmet_2224 or Gmet_2057 or Gmet_3305 or Gmet_1575",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH6"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH6"
],
"biocyc":[
"META:RXN-14273"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04740"
],
"metanetx.reaction":[
"MNXR97891"
],
"reactome.reaction":[
"R-BTA-77277",
"R-TGU-77277",
"R-SSC-77277",
"R-GGA-77277",
"R-CFA-77277",
"R-DME-77277",
"R-CEL-77277",
"R-MMU-77277",
"R-HSA-77277",
"R-RNO-77277",
"R-XTR-77277"
],
"rhea":[
"31173",
"31171",
"31174",
"31172"
],
"sabiork":[
"4396"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03241"
]
}
},
{
"id":"ECOAH7",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxyhexadecanoyl-CoA)",
"metabolites":{
"3hhdcoa_c":-1.0,
"h2o_c":1.0,
"hdd2coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2204 or Gmet_2196 or Gmet_1572 or Gmet_3284 or Gmet_2071 or Gmet_2207 or Gmet_2195 or Gmet_2212 or Gmet_2224 or Gmet_2057 or Gmet_3305 or Gmet_1575",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH7"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH7"
],
"biocyc":[
"META:RXN-14272"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04738"
],
"metanetx.reaction":[
"MNXR97892"
],
"reactome.reaction":[
"R-HSA-77301",
"R-MMU-77301",
"R-RNO-77301",
"R-TGU-77301",
"R-DME-77301",
"R-BTA-77301",
"R-CEL-77301",
"R-XTR-77301",
"R-SSC-77301",
"R-CFA-77301",
"R-GGA-77301"
],
"rhea":[
"31163",
"31166",
"31164",
"31165"
],
"sabiork":[
"4394"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03240"
]
}
},
{
"id":"ECOAH8",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxyoctadecanoyl-CoA)",
"metabolites":{
"3hodcoa_c":-1.0,
"h2o_c":1.0,
"od2coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2071 or Gmet_2196 or Gmet_2224 or Gmet_2057 or Gmet_1572 or Gmet_2207 or Gmet_3305 or Gmet_2212 or Gmet_2195 or Gmet_3284 or Gmet_1575 or Gmet_2204",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH8"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH8"
],
"ec-code":[
"4.2.1.134",
"4.2.1.17"
],
"metanetx.reaction":[
"MNXR97893"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08413"
]
}
},
{
"id":"EDTXS1",
"name":"Endotoxin Synthesis (lauroyl transferase)",
"metabolites":{
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"kdo2lipid4L_c":1.0,
"kdo2lipid4_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0091",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"EDTXS1"
]
},
"annotation":{
"bigg.reaction":[
"EDTXS1"
],
"ec-code":[
"2.3.1.241"
],
"metanetx.reaction":[
"MNXR97899"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR140x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:0)",
"metabolites":{
"h_c":-1.0,
"myrsACP_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"tmrs2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.0329451239599916,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR140x"
]
},
"annotation":{
"bigg.reaction":[
"EAR140x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97851"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR140y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:0)",
"metabolites":{
"h_c":-1.0,
"myrsACP_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"tmrs2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.0329451239599916,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR140y"
]
},
"annotation":{
"bigg.reaction":[
"EAR140y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97852"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EDTXS1N",
"name":"Endotoxin Synthesis (lauroyl transferase) (glucosediaminyl)",
"metabolites":{
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"kdo2lipid4Ln_c":1.0,
"kdo2lipid4n_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0091",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"EDTXS1N"
]
},
"annotation":{
"bigg.reaction":[
"EDTXS1N"
],
"metanetx.reaction":[
"MNXR97900"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR141x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:1)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"t3c7mrseACP_c":-1.0,
"tdeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.0270150016471933,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR141x"
]
},
"annotation":{
"bigg.reaction":[
"EAR141x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97853"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EDTXS2",
"name":"Endotoxin Synthesis (myristoyl transferase)",
"metabolites":{
"ACP_c":1.0,
"kdo2lipid4L_c":-1.0,
"lipa_c":1.0,
"myrsACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"EDTXS2"
]
},
"annotation":{
"bigg.reaction":[
"EDTXS2"
],
"ec-code":[
"2.3.1.243"
],
"metanetx.reaction":[
"MNXR97901"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPGAT120",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C12:0)",
"metabolites":{
"2agpg120_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ddca_c":-1.0,
"pg120_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"objective_coefficient":-0.149570862778363,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPGAT120"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT120"
],
"metanetx.reaction":[
"MNXR94771"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EDTXS2N",
"name":"Endotoxin Synthesis (myristoyl transferase) (glucosediaminyl)",
"metabolites":{
"ACP_c":1.0,
"kdo2lipid4Ln_c":-1.0,
"lipan_c":1.0,
"myrsACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"EDTXS2N"
]
},
"annotation":{
"bigg.reaction":[
"EDTXS2N"
],
"metanetx.reaction":[
"MNXR97902"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EGMEACPR",
"name":"Enoylglutaryl-[ACP] methyl ester reductase",
"metabolites":{
"egmeACP_c":-1.0,
"gmeACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"EGMEACPR"
]
},
"annotation":{
"bigg.reaction":[
"EGMEACPR"
],
"ec-code":[
"1.3.1.10"
],
"kegg.reaction":[
"R10118"
],
"metanetx.reaction":[
"MNXR97906"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ELCYTI",
"name":"Electrode Cytochrome interaction - Cathode (Electrons In)",
"metabolites":{
"elco_e":1.0,
"elcr_e":-1.0,
"omclo_e":-1.0,
"omclr_e":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"ELCYTI"
]
},
"annotation":{
"bigg.reaction":[
"ELCYTI"
],
"metanetx.reaction":[
"MNXR97916"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ELCYTO",
"name":"Electrode Cytochrome interaction - Anode (Electrons Out)",
"metabolites":{
"elao_e":-1.0,
"elar_e":1.0,
"omcho_e":1.0,
"omchr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0930 or Gmet_0557 or Gmet_0581 or Gmet_0558",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"ELCYTO"
]
},
"annotation":{
"bigg.reaction":[
"ELCYTO"
],
"metanetx.reaction":[
"MNXR97917"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ENO",
"name":"Enolase",
"metabolites":{
"2pg_c":-1.0,
"h2o_c":1.0,
"pep_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2372",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ENO"
]
},
"annotation":{
"bigg.reaction":[
"ENO"
],
"biocyc":[
"META:2PGADEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.11"
],
"kegg.reaction":[
"R00658"
],
"metanetx.reaction":[
"MNXR97932"
],
"reactome.reaction":[
"R-BTA-71660",
"R-RNO-70494",
"R-TGU-71660",
"R-SSC-71660",
"R-GGA-352981",
"R-DME-70494",
"R-CFA-70494",
"R-OSA-70494",
"R-SCE-71660",
"R-GGA-353044",
"R-CFA-71660",
"R-GGA-70494",
"R-PFA-71660",
"R-SPO-71660",
"R-SPO-70494",
"R-DDI-70494",
"R-RNO-71660",
"R-MMU-70494",
"R-ATH-70494",
"R-SCE-70494",
"R-SSC-70494",
"R-HSA-70494",
"R-DME-71660",
"R-CEL-71660",
"R-HSA-71660",
"R-TGU-70494",
"R-XTR-71660",
"R-DRE-70494",
"R-DRE-71660",
"R-MMU-71660",
"R-ATH-71660",
"R-BTA-70494",
"R-CEL-70494",
"R-XTR-70494",
"R-DDI-71660",
"R-OSA-71660",
"R-PFA-70494",
"R-GGA-71660"
],
"rhea":[
"10166",
"10165",
"10164",
"10167"
],
"sabiork":[
"8"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00459"
]
}
},
{
"id":"EAR141y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:1)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"t3c7mrseACP_c":-1.0,
"tdeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.0270150016471933,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR141y"
]
},
"annotation":{
"bigg.reaction":[
"EAR141y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97854"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR160x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:0)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"palmACP_c":1.0,
"tpalm2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.00658902479199847,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR160x"
]
},
"annotation":{
"bigg.reaction":[
"EAR160x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97855"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR160y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C16:0)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"palmACP_c":1.0,
"tpalm2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.00658902479199847,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR160y"
]
},
"annotation":{
"bigg.reaction":[
"EAR160y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97856"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR161x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:1)",
"metabolites":{
"h_c":-1.0,
"hdeACP_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"t3c9palmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.0105424396671975,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR161x"
]
},
"annotation":{
"bigg.reaction":[
"EAR161x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97857"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR161y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C16:1)",
"metabolites":{
"h_c":-1.0,
"hdeACP_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"t3c9palmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"objective_coefficient":-0.0105424396671975,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR161y"
]
},
"annotation":{
"bigg.reaction":[
"EAR161y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97858"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR180x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:0)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"ocdcaACP_c":1.0,
"toctd2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR180x"
]
},
"annotation":{
"bigg.reaction":[
"EAR180x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97859"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR180y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C18:0)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"ocdcaACP_c":1.0,
"toctd2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR180y"
]
},
"annotation":{
"bigg.reaction":[
"EAR180y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97860"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR181x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:1)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"octeACP_c":1.0,
"t3c11vaceACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR181x"
]
},
"annotation":{
"bigg.reaction":[
"EAR181x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97861"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EPMEACPR",
"name":"Enoylpimeloyl-[ACP] methyl ester reductase",
"metabolites":{
"epmeACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"pmeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"EPMEACPR"
]
},
"annotation":{
"bigg.reaction":[
"EPMEACPR"
],
"ec-code":[
"1.3.1.10"
],
"kegg.reaction":[
"R10122"
],
"metanetx.reaction":[
"MNXR97945"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ETHSO3abcpp",
"name":"Ethanesulfonate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ethso3_c":1.0,
"ethso3_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0996 and Gmet_0997 and Gmet_0998) or (Gmet_1901 and Gmet_1899 and Gmet_1900)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ETHSO3abcpp"
]
},
"annotation":{
"bigg.reaction":[
"ETHSO3abcpp"
],
"metanetx.reaction":[
"MNXR97977"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05552",
"rxn08425"
]
}
},
{
"id":"ETHSO3tex",
"name":"Ethanesulfonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ethso3_e":-1.0,
"ethso3_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"ETHSO3tex"
]
},
"annotation":{
"bigg.reaction":[
"ETHSO3tex"
],
"metanetx.reaction":[
"MNXR97978"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08426"
]
}
},
{
"id":"ETOHtex",
"name":"Ethanol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"etoh_e":-1.0,
"etoh_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"ETOHtex"
]
},
"annotation":{
"bigg.reaction":[
"ETOHtex"
],
"biocyc":[
"META:TRANS-RXN0-546"
],
"metanetx.reaction":[
"MNXR97980"
],
"rhea":[
"35269",
"35267",
"35270",
"35268"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09683",
"rxn08428",
"rxn09764"
]
}
},
{
"id":"EAR181y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C18:1)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"octeACP_c":1.0,
"t3c11vaceACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR181y"
]
},
"annotation":{
"bigg.reaction":[
"EAR181y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97862"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR40x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C4:0)",
"metabolites":{
"but2eACP_c":-1.0,
"butACP_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR40x"
]
},
"annotation":{
"bigg.reaction":[
"EAR40x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97863"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR40y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C4:0)",
"metabolites":{
"but2eACP_c":-1.0,
"butACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR40y"
]
},
"annotation":{
"bigg.reaction":[
"EAR40y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97864"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ETOHtrpp",
"name":"Ethanol reversible transport via diffusion (periplasm)",
"metabolites":{
"etoh_c":1.0,
"etoh_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ETOHtrpp"
]
},
"annotation":{
"bigg.reaction":[
"ETOHtrpp"
],
"biocyc":[
"META:TRANS-RXN0-546"
],
"metanetx.reaction":[
"MNXR97980"
],
"rhea":[
"35269",
"35267",
"35270",
"35268"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09683",
"rxn08428",
"rxn09764"
]
}
},
{
"id":"FA100ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"dcaACP_c":-1.0,
"dca_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2389",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA100ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA100ACPHi"
],
"ec-code":[
"3.1.2.21"
],
"metanetx.reaction":[
"MNXR99086"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR60x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C6:0)",
"metabolites":{
"h_c":-1.0,
"hexACP_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"thex2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR60x"
]
},
"annotation":{
"bigg.reaction":[
"EAR60x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97865"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPGAT140",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C14:0)",
"metabolites":{
"2agpg140_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"pg140_c":1.0,
"ppi_c":1.0,
"ttdca_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPGAT140"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT140"
],
"metanetx.reaction":[
"MNXR94772"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR60y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0)",
"metabolites":{
"h_c":-1.0,
"hexACP_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"thex2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR60y"
]
},
"annotation":{
"bigg.reaction":[
"EAR60y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97866"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR80x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C8:0)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"ocACP_c":1.0,
"toct2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR80x"
]
},
"annotation":{
"bigg.reaction":[
"EAR80x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97867"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR80y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C8:0)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"ocACP_c":1.0,
"toct2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2558",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR80y"
]
},
"annotation":{
"bigg.reaction":[
"EAR80y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97868"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA120ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"ddca_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2389",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA120ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA120ACPHi"
],
"ec-code":[
"3.1.2.21"
],
"metanetx.reaction":[
"MNXR99087"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA140ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"myrsACP_c":-1.0,
"ttdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2389",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA140ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA140ACPHi"
],
"ec-code":[
"3.1.2.14"
],
"metanetx.reaction":[
"MNXR99089"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA141ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"tdeACP_c":-1.0,
"ttdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2389",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA141ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA141ACPHi"
],
"ec-code":[
"3.1.2.14"
],
"metanetx.reaction":[
"MNXR99093"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA160ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdca_c":1.0,
"palmACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2389",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA160ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA160ACPHi"
],
"ec-code":[
"3.1.2.14"
],
"metanetx.reaction":[
"MNXR99097"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ECOAH1",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxybutanoyl-CoA)",
"metabolites":{
"3hbcoa_c":-1.0,
"b2coa_c":1.0,
"h2o_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2071 or Gmet_2196 or Gmet_2224 or Gmet_2057 or Gmet_1572 or Gmet_2207 or Gmet_3305 or Gmet_2212 or Gmet_2195 or Gmet_3284 or Gmet_1575 or Gmet_2204",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH1"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH1"
],
"biocyc":[
"META:RXN-11667"
],
"ec-code":[
"4.2.1.150",
"4.2.1.17",
"4.2.1.55"
],
"kegg.reaction":[
"R03026"
],
"metanetx.reaction":[
"MNXR97883"
],
"reactome.reaction":[
"R-CFA-77314",
"R-TGU-77314",
"R-RNO-77314",
"R-SCE-77314",
"R-HSA-77314",
"R-CEL-77314",
"R-DDI-77314",
"R-DRE-77314",
"R-SSC-77314",
"R-GGA-77314",
"R-XTR-77314",
"R-MMU-77314",
"R-DME-77314",
"R-BTA-77314"
],
"rhea":[
"26559",
"26558",
"26560",
"26561"
],
"sabiork":[
"2876"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02167"
]
}
},
{
"id":"ECOAH2",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxyhexanoyl-CoA)",
"metabolites":{
"3hhcoa_c":-1.0,
"h2o_c":1.0,
"hx2coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2204 or Gmet_2196 or Gmet_1572 or Gmet_3284 or Gmet_2071 or Gmet_2207 or Gmet_2195 or Gmet_2212 or Gmet_2224 or Gmet_2057 or Gmet_3305 or Gmet_1575",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH2"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH2"
],
"biocyc":[
"META:RXN-12567"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04749"
],
"metanetx.reaction":[
"MNXR97886"
],
"reactome.reaction":[
"R-HSA-77325",
"R-DME-77325",
"R-MMU-77325",
"R-RNO-77325",
"R-BTA-77325",
"R-TGU-77325",
"R-XTR-77325",
"R-CFA-77325",
"R-DDI-77325",
"R-SCE-77325",
"R-CEL-77325",
"R-DRE-77325",
"R-SSC-77325",
"R-GGA-77325"
],
"rhea":[
"30548",
"30547",
"30550",
"30549"
],
"sabiork":[
"4405"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03250"
]
}
},
{
"id":"ECOAH3",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxyoctanoyl-CoA)",
"metabolites":{
"3hocoa_c":-1.0,
"h2o_c":1.0,
"oc2coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2204 or Gmet_2196 or Gmet_1572 or Gmet_3284 or Gmet_2071 or Gmet_2207 or Gmet_2195 or Gmet_2212 or Gmet_2224 or Gmet_2057 or Gmet_3305 or Gmet_1575",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH3"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH3"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04746"
],
"metanetx.reaction":[
"MNXR97888"
],
"reactome.reaction":[
"R-SSC-77333",
"R-GGA-77333",
"R-RNO-77333",
"R-BTA-77333",
"R-XTR-77333",
"R-CEL-77333",
"R-MMU-77333",
"R-TGU-77333",
"R-DME-77333",
"R-HSA-77333",
"R-DDI-77333",
"R-SCE-77333",
"R-DRE-77333",
"R-CFA-77333"
],
"rhea":[
"31202",
"31200",
"31201",
"31199"
],
"sabiork":[
"4402"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03247"
]
}
},
{
"id":"FA161ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdcea_c":1.0,
"hdeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2389",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA161ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA161ACPHi"
],
"ec-code":[
"3.1.2.14"
],
"metanetx.reaction":[
"MNXR99103"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA80ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ocACP_c":-1.0,
"octa_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2389",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA80ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA80ACPHi"
],
"ec-code":[
"3.1.2.21"
],
"metanetx.reaction":[
"MNXR99125"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAE140",
"name":"Fatty-acid-CoA thioesterase (tetradecanoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"tdcoa_c":-1.0,
"ttdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0769",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAE140"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE140"
],
"ec-code":[
"3.1.2.2"
],
"metanetx.reaction":[
"MNXR99129"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAE160",
"name":"Fatty-acid-CoA thioesterase (hexadecanoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdca_c":1.0,
"pmtcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0769",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAE160"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE160"
],
"biocyc":[
"META:PALMITOYL-COA-HYDROLASE-RXN"
],
"ec-code":[
"3.1.2.22",
"3.1.2.2"
],
"kegg.reaction":[
"R01274"
],
"metanetx.reaction":[
"MNXR99131"
],
"rhea":[
"16648",
"16645",
"16646",
"16647"
],
"sabiork":[
"1490"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00943"
]
}
},
{
"id":"ECOAH4",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxydecanoyl-CoA)",
"metabolites":{
"3hdcoa_c":-1.0,
"dc2coa_c":1.0,
"h2o_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2204 or Gmet_2196 or Gmet_1572 or Gmet_3284 or Gmet_2071 or Gmet_2207 or Gmet_2195 or Gmet_2212 or Gmet_2224 or Gmet_2057 or Gmet_3305 or Gmet_1575",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH4"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH4"
],
"biocyc":[
"META:RXN-13616"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04744"
],
"metanetx.reaction":[
"MNXR97889"
],
"reactome.reaction":[
"R-HSA-77344",
"R-CEL-77344",
"R-CFA-77344",
"R-GGA-77344",
"R-TGU-77344",
"R-MMU-77344",
"R-DME-77344",
"R-RNO-77344",
"R-SSC-77344",
"R-DDI-77344",
"R-DRE-77344",
"R-BTA-77344",
"R-SCE-77344",
"R-XTR-77344"
],
"rhea":[
"31193",
"31191",
"31194",
"31192"
],
"sabiork":[
"4400"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03245"
]
}
},
{
"id":"2AGPGAT141",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C14:1)",
"metabolites":{
"2agpg141_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"pg141_c":1.0,
"ppi_c":1.0,
"ttdcea_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"objective_coefficient":-0.143640740465564,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPGAT141"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT141"
],
"metanetx.reaction":[
"MNXR94773"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAE161",
"name":"Fatty-acid-CoA thioesterase (hexadecenoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdcea_c":1.0,
"hdcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0769",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAE161"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE161"
],
"metanetx.reaction":[
"MNXR99132"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAL100t2pp",
"name":"Fatty-acid-CoA ligase (decanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"dca_p":-1.0,
"dcacoa_c":1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL100t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL100t2pp"
],
"metanetx.reaction":[
"MNXR99142"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPGAT160",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C16:0)",
"metabolites":{
"2agpg160_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdca_c":-1.0,
"pg160_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPGAT160"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT160"
],
"metanetx.reaction":[
"MNXR94774"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAL120t2pp",
"name":"Fatty-acid-CoA ligase (dodecanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ddca_p":-1.0,
"ddcacoa_c":1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL120t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL120t2pp"
],
"metanetx.reaction":[
"MNXR99144"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL140t2pp",
"name":"Fatty-acid-CoA ligase (tetradecanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0,
"tdcoa_c":1.0,
"ttdca_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL140t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL140t2pp"
],
"metanetx.reaction":[
"MNXR99147"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL141t2pp",
"name":"Fatty-acid-CoA ligase (tetradecenoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0,
"tdecoa_c":1.0,
"ttdcea_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL141t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL141t2pp"
],
"metanetx.reaction":[
"MNXR99149"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GLCP",
"name":"Glycogen phosphorylase",
"metabolites":{
"g1p_c":1.0,
"glycogen_c":-1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0940 or Gmet_3159 or Gmet_2767",
"objective_coefficient":8.23993651088983e-18,
"subsystem":"Carbohydrate Metabolism",
"notes":{
"original_bigg_ids":[
"GLCP"
]
},
"annotation":{
"bigg.reaction":[
"GLCP"
],
"metanetx.reaction":[
"MNXR100214"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13299"
]
}
},
{
"id":"GLCS1",
"name":"Glycogen synthase (ADPGlc)",
"metabolites":{
"adp_c":1.0,
"adpglc_c":-1.0,
"glycogen_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3175 or Gmet_0707",
"subsystem":"Carbohydrate Metabolism",
"notes":{
"original_bigg_ids":[
"GLCS1"
]
},
"annotation":{
"bigg.reaction":[
"GLCS1"
],
"ec-code":[
"2.4.1.21"
],
"metanetx.reaction":[
"MNXR100223"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13643"
]
}
},
{
"id":"2AGPGAT161",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C16:1)",
"metabolites":{
"2agpg161_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdcea_c":-1.0,
"pg161_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPGAT161"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT161"
],
"metanetx.reaction":[
"MNXR94775"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAL160t2pp",
"name":"Fatty-acid-CoA ligase (hexadecanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"hdca_p":-1.0,
"pmtcoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL160t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL160t2pp"
],
"metanetx.reaction":[
"MNXR99155"
],
"rhea":[
"51716",
"51719",
"51717",
"51718"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FADMQOR",
"name":"Menaquinone:FAD oxidoreductase",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"((Gmet_0683 and Gmet_0684) and Gmet_0685) or ((Gmet_2066 and Gmet_2067) and Gmet_2065) or ((Gmet_2257 and Gmet_2258) and Gmet_2255) or ((Gmet_2152 and Gmet_2153) and Gmet_2070) or ((Gmet_1525 and Gmet_1526) and Gmet_1527) or ((Gmet_2262 and Gmet_2263) and Gmet_2264) or ((Gmet_1712 and Gmet_1713) and Gmet_1714) or ((Gmet_2265 and Gmet_2266) and Gmet_2267)",
"objective_coefficient":-0.00593012231279866,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"FADMQOR"
]
},
"annotation":{
"bigg.reaction":[
"FADMQOR"
],
"metanetx.reaction":[
"MNXR99213"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAL161t2pp",
"name":"Fatty-acid-CoA ligase (hexadecenoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"hdcea_p":-1.0,
"hdcoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL161t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL161t2pp"
],
"metanetx.reaction":[
"MNXR99158"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPGAT180",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C18:0)",
"metabolites":{
"2agpg180_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdca_c":-1.0,
"pg180_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPGAT180"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT180"
],
"metanetx.reaction":[
"MNXR94776"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAL180t2pp",
"name":"Fatty-acid-CoA ligase (octadecanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ocdca_p":-1.0,
"ppi_c":1.0,
"stcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL180t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL180t2pp"
],
"metanetx.reaction":[
"MNXR99167"
],
"rhea":[
"51723",
"51720",
"51722",
"51721"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL181t2pp",
"name":"Fatty-acid-CoA ligase (octadecenoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ocdcea_p":-1.0,
"odecoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL181t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL181t2pp"
],
"metanetx.reaction":[
"MNXR99173"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL40It2pp",
"name":"Fatty-acid--CoA ligase (isobutanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ibcoa_c":1.0,
"ibt_p":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2020",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FACOAL40It2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL40It2pp"
],
"metanetx.reaction":[
"MNXR99199"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL40t2pp",
"name":"Fatty-acid--CoA ligase (butanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"btcoa_c":1.0,
"but_p":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2020",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FACOAL40t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL40t2pp"
],
"metanetx.reaction":[
"MNXR99201"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FBA",
"name":"Fructose-bisphosphate aldolase",
"metabolites":{
"dhap_c":1.0,
"fdp_c":-1.0,
"g3p_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1761 or Gmet_2383",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"FBA"
]
},
"annotation":{
"bigg.reaction":[
"FBA"
],
"ec-code":[
"4.1.2.13"
],
"kegg.reaction":[
"R01068"
],
"metanetx.reaction":[
"MNXR99459"
],
"rhea":[
"14729",
"14732",
"14731",
"14730"
],
"sabiork":[
"1338"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00786"
]
}
},
{
"id":"FBP",
"name":"Fructose-bisphosphatase",
"metabolites":{
"f6p_c":1.0,
"fdp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1921",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"FBP"
]
},
"annotation":{
"bigg.reaction":[
"FBP"
],
"ec-code":[
"3.1.3.11"
],
"metanetx.reaction":[
"MNXR99465"
],
"rhea":[
"11067",
"11065",
"11066",
"11064"
],
"sabiork":[
"2084"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FCLT",
"name":"Ferrochelatase",
"metabolites":{
"fe2_c":-1.0,
"h_c":2.0,
"pheme_c":1.0,
"ppp9_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0019",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"FCLT"
]
},
"annotation":{
"bigg.reaction":[
"FCLT"
],
"biocyc":[
"META:PROTOHEMEFERROCHELAT-RXN"
],
"ec-code":[
"4.99.1.1"
],
"kegg.reaction":[
"R00310"
],
"metanetx.reaction":[
"MNXR99471"
],
"rhea":[
"22585",
"22586",
"22584",
"22587"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FDH5r2pp",
"name":"Formate Dehydrogenase (menaquinone-8) (periplasm) 2 protons",
"metabolites":{
"co2_p":1.0,
"for_p":-1.0,
"h_c":-3.0,
"h_p":2.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1004 and Gmet_1059 and Gmet_1060 and Gmet_1061",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"FDH5r2pp"
]
},
"annotation":{
"bigg.reaction":[
"FDH5r2pp"
],
"ec-code":[
"1.2.2.1"
],
"metanetx.reaction":[
"MNXR99482"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FE2Gabcpp",
"name":"Iron (II) transport via ABC system (GTP) (periplasm)",
"metabolites":{
"fe2_c":1.0,
"fe2_p":-1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2444",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FE2Gabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FE2Gabcpp"
],
"metanetx.reaction":[
"MNXR99502"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FE2t4pp",
"name":"Iron(II) transport out via antiport (periplasm)",
"metabolites":{
"fe2_c":-1.0,
"fe2_p":1.0,
"h_c":1.0,
"h_p":-1.0,
"k_c":1.0,
"k_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_3071) or ((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_3071)",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FE2t4pp"
]
},
"annotation":{
"bigg.reaction":[
"FE2t4pp"
],
"metanetx.reaction":[
"MNXR99507"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FE2tex",
"name":"Iron (II) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"fe2_e":-1.0,
"fe2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"FE2tex"
]
},
"annotation":{
"bigg.reaction":[
"FE2tex"
],
"biocyc":[
"META:TRANS-RXN-8"
],
"metanetx.reaction":[
"MNXR99505"
],
"rhea":[
"28488",
"28487",
"28489",
"28486"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08476",
"rxn08475",
"rxn13286",
"rxn10963"
]
}
},
{
"id":"FACOAL50It2pp",
"name":"Fatty-acid--CoA ligase (isovalerate transport via vectoral Co-A coupling)",
"metabolites":{
"3mb_p":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ivcoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2020",
"objective_coefficient":-2.77555756156289e-16,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FACOAL50It2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL50It2pp"
],
"metanetx.reaction":[
"MNXR99202"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL50t2pp",
"name":"Fatty-acid--CoA ligase (pentanoate / valerate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0,
"pta_p":-1.0,
"ptcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2020",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FACOAL50t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL50t2pp"
],
"metanetx.reaction":[
"MNXR99203"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL60t2pp",
"name":"Fatty-acid-CoA ligase (hexanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"hxa_p":-1.0,
"hxcoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL60t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL60t2pp"
],
"metanetx.reaction":[
"MNXR99204"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FE3Gabcpp",
"name":"Iron (III) transport via ABC system (GTP) (periplasm)",
"metabolites":{
"fe3_c":1.0,
"fe3_p":-1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2444",
"objective_coefficient":-0.00658902479199845,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FE3Gabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FE3Gabcpp"
],
"metanetx.reaction":[
"MNXR99513"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPGAT181",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C18:1)",
"metabolites":{
"2agpg181_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdcea_c":-1.0,
"pg181_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0086 or Gmet_1613",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"_2AGPGAT181"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT181"
],
"metanetx.reaction":[
"MNXR94777"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FE3tex",
"name":"Iron (III) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"fe3_e":-1.0,
"fe3_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"FE3tex"
]
},
"annotation":{
"bigg.reaction":[
"FE3tex"
],
"metanetx.reaction":[
"MNXR99522"
],
"reactome.reaction":[
"R-RNO-442368",
"R-HSA-442368",
"R-BTA-442368",
"R-SSC-442368",
"R-MMU-442368",
"R-CFA-442368",
"R-GGA-442368",
"R-TGU-442368"
],
"rhea":[
"34973",
"34972",
"34974",
"34971"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05292",
"rxn08492"
]
}
},
{
"id":"FERCYT",
"name":"Fe (III) Reductase: G sulfurreducens",
"metabolites":{
"fe2_e":1.0,
"fe3_e":-1.0,
"omcho_e":1.0,
"omchr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0581 or Gmet_0557 or Gmet_0558 or Gmet_0930",
"subsystem":"Metal Respiration",
"notes":{
"original_bigg_ids":[
"FERCYT"
]
},
"annotation":{
"bigg.reaction":[
"FERCYT"
],
"metanetx.reaction":[
"MNXR99559"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAL80t2pp",
"name":"Fatty-acid-CoA ligase (octanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"occoa_c":1.0,
"octa_p":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0256 or Gmet_2229 or Gmet_2692 or Gmet_2246 or Gmet_1469 or Gmet_2252",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"FACOAL80t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL80t2pp"
],
"metanetx.reaction":[
"MNXR99206"
],
"rhea":[
"51824",
"51825",
"51827",
"51826"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GLCTR4",
"name":"Glucosyltransferase (LPS core synthesis) (glucosyl-(1->4Hep1)-heptosyl-(1->3)-heptosyl-(1->5)-kdo2-lipidA)",
"metabolites":{
"ghhlipa_c":1.0,
"h_c":1.0,
"hhlipa_c":-1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2344",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GLCTR4"
]
},
"annotation":{
"bigg.reaction":[
"GLCTR4"
],
"metanetx.reaction":[
"MNXR143140"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GLCTR4N",
"name":"Glucosyltransferase (LPS core synthesis) (glucosediamine) (glucosyl-(1->4Hep1)-heptosyl-(1->3)-heptosyl-(1->5)-kdo2-lipidA)",
"metabolites":{
"ghhlipan_c":1.0,
"h_c":1.0,
"hhlipan_c":-1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2344",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GLCTR4N"
]
},
"annotation":{
"bigg.reaction":[
"GLCTR4N"
],
"metanetx.reaction":[
"MNXR143141"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2OBUTt2ipp",
"name":"2-oxobutanoate transport out via proton symport (periplasm)",
"metabolites":{
"2obut_c":-1.0,
"2obut_p":1.0,
"h_c":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0250382942095935,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"_2OBUTt2ipp"
]
},
"annotation":{
"bigg.reaction":[
"2OBUTt2ipp"
],
"metanetx.reaction":[
"MNXR94813"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12522"
]
}
},
{
"id":"GLCURt2rpp",
"name":"D-glucuronate transport via proton symport, reversible (periplasm)",
"metabolites":{
"glcur_c":1.0,
"glcur_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3221",
"objective_coefficient":-0.00197670743759953,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLCURt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GLCURt2rpp"
],
"metanetx.reaction":[
"MNXR100234"
],
"rhea":[
"28956",
"28958",
"28957",
"28955"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08622",
"rxn05574"
]
}
},
{
"id":"GLCURtex",
"name":"D-glucuronat transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glcur_e":-1.0,
"glcur_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"GLCURtex"
]
},
"annotation":{
"bigg.reaction":[
"GLCURtex"
],
"metanetx.reaction":[
"MNXR100235"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08623"
]
}
},
{
"id":"FESD1s",
"name":"Iron-sulfur cluster damage (peroxide, spontaneous)",
"metabolites":{
"3fe4s_c":2.0,
"4fe4s_c":-2.0,
"fe3_c":2.0,
"h2o2_c":-1.0,
"h2o_c":2.0,
"h_c":-2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"s_0001",
"objective_coefficient":-0.00922463470879782,
"subsystem":"Spontaneous Reaction",
"notes":{
"original_bigg_ids":[
"FESD1s"
]
},
"annotation":{
"bigg.reaction":[
"FESD1s"
],
"metanetx.reaction":[
"MNXR99585"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FESD2s",
"name":"Iron-sulfur cluster damage (nitrous oxide, spontaneous)",
"metabolites":{
"3fe4s_c":2.0,
"4fe4s_c":-2.0,
"fe3_c":2.0,
"h2o_c":1.0,
"h_c":-2.0,
"n2o_c":1.0,
"no_c":-2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"s_0001",
"objective_coefficient":-0.0131780495839969,
"subsystem":"Spontaneous Reaction",
"notes":{
"original_bigg_ids":[
"FESD2s"
]
},
"annotation":{
"bigg.reaction":[
"FESD2s"
],
"metanetx.reaction":[
"MNXR99586"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FESR",
"name":"Iron-sulfur cluster repair",
"metabolites":{
"3fe4s_c":-1.0,
"4fe4s_c":1.0,
"fe2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3494",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"FESR"
]
},
"annotation":{
"bigg.reaction":[
"FESR"
],
"metanetx.reaction":[
"MNXR99587"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FLNDPR2r",
"name":"Flavodoxin : nadp reductase",
"metabolites":{
"flxr_c":-2.0,
"flxso_c":2.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"nadp_c":-2.0,
"nadph_c":2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3022 and Gmet_3023",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"FLNDPR2r"
]
},
"annotation":{
"bigg.reaction":[
"FLNDPR2r"
],
"metanetx.reaction":[
"MNXR99600"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FMETTRS",
"name":"Methionyl-tRNA formyltransferase",
"metabolites":{
"10fthf_c":-1.0,
"fmettrna_c":1.0,
"h_c":1.0,
"mettrna_c":-1.0,
"thf_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3339",
"objective_coefficient":-0.00757737851079831,
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"FMETTRS"
]
},
"annotation":{
"bigg.reaction":[
"FMETTRS"
],
"ec-code":[
"2.1.2.9"
],
"kegg.reaction":[
"R03940"
],
"metanetx.reaction":[
"MNXR99604"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FMNAT",
"name":"FMN adenylyltransferase",
"metabolites":{
"atp_c":-1.0,
"fad_c":1.0,
"fmn_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1388",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"FMNAT"
]
},
"annotation":{
"bigg.reaction":[
"FMNAT"
],
"biocyc":[
"META:FADSYN-RXN"
],
"ec-code":[
"2.7.7.2"
],
"kegg.reaction":[
"R00161"
],
"metanetx.reaction":[
"MNXR95501"
],
"reactome.reaction":[
"R-XTR-196929",
"R-ATH-196929",
"R-GGA-196929",
"R-SSC-196929",
"R-DRE-196929",
"R-HSA-196929",
"R-RNO-196929",
"R-SCE-196929",
"R-CEL-196929",
"R-DDI-196929",
"R-BTA-196929",
"R-MMU-196929",
"R-DME-196929",
"R-SPO-196929",
"R-TGU-196929",
"R-PFA-196929",
"R-CFA-196929"
],
"rhea":[
"17239",
"17240",
"17238",
"17237"
],
"sabiork":[
"390"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00122"
]
}
},
{
"id":"GLGC",
"name":"Glucose-1-phosphate adenylyltransferase",
"metabolites":{
"adpglc_c":1.0,
"atp_c":-1.0,
"g1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2768",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"GLGC"
]
},
"annotation":{
"bigg.reaction":[
"GLGC"
],
"biocyc":[
"META:GLUC1PADENYLTRANS-RXN"
],
"ec-code":[
"2.7.7.27"
],
"kegg.reaction":[
"R00948"
],
"metanetx.reaction":[
"MNXR100243"
],
"rhea":[
"12122",
"12121",
"12120",
"12123"
],
"sabiork":[
"9396",
"1262"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00695"
]
}
},
{
"id":"GLNS",
"name":"Glutamine synthetase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gln__L_c":1.0,
"glu__L_c":-1.0,
"h_c":1.0,
"nh4_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1352",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GLNS"
]
},
"annotation":{
"bigg.reaction":[
"GLNS"
],
"biocyc":[
"META:GLUTAMINESYN-RXN"
],
"ec-code":[
"6.3.1.2"
],
"kegg.reaction":[
"R00253"
],
"metanetx.reaction":[
"MNXR100024"
],
"reactome.reaction":[
"R-GGA-70606",
"R-RNO-70606",
"R-TGU-70606",
"R-DME-70606",
"R-CEL-70606",
"R-DRE-70606",
"R-XTR-70606",
"R-SPO-70606",
"R-ATH-70606",
"R-CFA-70606",
"R-BTA-70606",
"R-OSA-70606",
"R-SSC-70606",
"R-MMU-70606",
"R-HSA-70606",
"R-SCE-70606"
],
"rhea":[
"16172",
"16171",
"16169",
"16170"
],
"sabiork":[
"760"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00187"
]
}
},
{
"id":"2OBUTtex",
"name":"2-oxobutanoate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"2obut_e":-1.0,
"2obut_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"_2OBUTtex"
]
},
"annotation":{
"bigg.reaction":[
"2OBUTtex"
],
"biocyc":[
"META:TRANS-RXN0-558"
],
"metanetx.reaction":[
"MNXR94814"
],
"sabiork":[
"12475"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13195"
]
}
},
{
"id":"GLNTRS",
"name":"Glutaminyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gln__L_c":-1.0,
"glntrna_c":1.0,
"ppi_c":1.0,
"trnagln_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0058 or (Gmet_0073 and Gmet_0075 and Gmet_0076)",
"objective_coefficient":-0.0546889057735864,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GLNTRS"
]
},
"annotation":{
"bigg.reaction":[
"GLNTRS"
],
"ec-code":[
"6.1.1.18"
],
"kegg.reaction":[
"R03652"
],
"metanetx.reaction":[
"MNXR100257"
],
"reactome.reaction":[
"R-HSA-379982",
"R-HSA-380241"
],
"sabiork":[
"3430"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06437"
]
}
},
{
"id":"GLU5K",
"name":"Glutamate 5-kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glu5p_c":1.0,
"glu__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3198",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GLU5K"
]
},
"annotation":{
"bigg.reaction":[
"GLU5K"
],
"biocyc":[
"META:GLUTKIN-RXN"
],
"ec-code":[
"2.7.2.11"
],
"kegg.reaction":[
"R00239"
],
"metanetx.reaction":[
"MNXR100277"
],
"rhea":[
"14878",
"14880",
"14877",
"14879"
],
"sabiork":[
"752"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00179"
]
}
},
{
"id":"GLUDy",
"name":"Glutamate dehydrogenase (NADP)",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"nh4_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1186",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GLUDy"
]
},
"annotation":{
"bigg.reaction":[
"GLUDy"
],
"biocyc":[
"META:GLUTDEHYD-RXN"
],
"ec-code":[
"1.4.1.13",
"1.4.1.3",
"1.4.1.4"
],
"kegg.reaction":[
"R00248"
],
"metanetx.reaction":[
"MNXR100086"
],
"rhea":[
"11613",
"11614",
"11612",
"11615"
],
"sabiork":[
"757"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00184"
]
}
},
{
"id":"FOLR2",
"name":"Folate reductase",
"metabolites":{
"dhf_c":1.0,
"fol_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2947",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"FOLR2"
]
},
"annotation":{
"bigg.reaction":[
"FOLR2"
],
"ec-code":[
"1.5.1.3"
],
"kegg.reaction":[
"R02236"
],
"metanetx.reaction":[
"MNXR97400"
],
"reactome.reaction":[
"R-TGU-197963",
"R-HSA-197963",
"R-DRE-197963",
"R-SSC-197963",
"R-XTR-197963",
"R-BTA-197963",
"R-DME-197963",
"R-MMU-197963",
"R-CEL-197963",
"R-GGA-197963",
"R-RNO-197963",
"R-SCE-197963",
"R-CFA-197963",
"R-SPO-197963",
"R-DDI-197963"
],
"rhea":[
"31104",
"31103",
"31106",
"31105"
],
"sabiork":[
"2207"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01602"
]
}
},
{
"id":"FORt2pp",
"name":"Formate transport via proton symport (uptake only, periplasm)",
"metabolites":{
"for_c":1.0,
"for_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FORt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"FORt2pp"
],
"metanetx.reaction":[
"MNXR99621"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08524",
"rxn05559"
]
}
},
{
"id":"FORtex",
"name":"Formate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"for_e":-1.0,
"for_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"FORtex"
]
},
"annotation":{
"bigg.reaction":[
"FORtex"
],
"biocyc":[
"META:TRANS-RXN-1"
],
"metanetx.reaction":[
"MNXR99620"
],
"reactome.reaction":[
"R-HSA-6803255"
],
"rhea":[
"29681",
"29680",
"29682",
"29679"
],
"sabiork":[
"12483"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09754",
"rxn08525",
"rxn09682",
"rxn08526"
]
}
},
{
"id":"GLUPRT",
"name":"Glutamine phosphoribosyldiphosphate amidotransferase",
"metabolites":{
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"ppi_c":1.0,
"pram_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1939",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GLUPRT"
]
},
"annotation":{
"bigg.reaction":[
"GLUPRT"
],
"biocyc":[
"META:PRPPAMIDOTRANS-RXN"
],
"ec-code":[
"2.4.2.14"
],
"kegg.reaction":[
"R01072"
],
"metanetx.reaction":[
"MNXR100287"
],
"reactome.reaction":[
"R-DME-73815",
"R-GGA-73815",
"R-SPO-73815",
"R-OSA-73815",
"R-TGU-73815",
"R-GGA-419152",
"R-ATH-73815",
"R-MMU-73815",
"R-SSC-73815",
"R-DDI-73815",
"R-CEL-73815",
"R-CFA-73815",
"R-SCE-73815",
"R-BTA-73815",
"R-RNO-73815",
"R-XTR-73815",
"R-DRE-73815",
"R-HSA-73815"
],
"rhea":[
"14905",
"14908",
"14906",
"14907"
],
"sabiork":[
"114"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00790"
]
}
},
{
"id":"GLUR",
"name":"Glutamate racemase",
"metabolites":{
"glu__D_c":-1.0,
"glu__L_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0547",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GLUR"
]
},
"annotation":{
"bigg.reaction":[
"GLUR"
],
"biocyc":[
"META:GLUTRACE-RXN"
],
"ec-code":[
"5.1.1.3"
],
"kegg.reaction":[
"R00260"
],
"metanetx.reaction":[
"MNXR100288"
],
"rhea":[
"12813",
"12814",
"12815",
"12816"
],
"sabiork":[
"765"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00193"
]
}
},
{
"id":"FRD2rpp",
"name":"Fumarate reductase / succinate dehydrogenase (irreversible) (periplasmic, membrane potential dissipating)",
"metabolites":{
"fum_c":1.0,
"h_c":2.0,
"h_p":-2.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"succ_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2395 and Gmet_2396 and Gmet_2397) or (Gmet_0308 and Gmet_0309 and Gmet_0310)",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"FRD2rpp"
]
},
"annotation":{
"bigg.reaction":[
"FRD2rpp"
],
"metanetx.reaction":[
"MNXR99638"
],
"sbo":"SBO:0000185"
}
},
{
"id":"UM4PL",
"name":"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate-D-alanine ligase",
"metabolites":{
"LalaDgluMdapDala_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uamr_c":-1.0,
"um4p_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"UM4PL"
]
},
"annotation":{
"bigg.reaction":[
"UM4PL"
],
"metanetx.reaction":[
"MNXR143441"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09360"
]
}
},
{
"id":"FRDPPCR2",
"name":"Ferredoxin cytochrome c reductase ( 2 protons)",
"metabolites":{
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":2.0,
"h_p":-2.0,
"ppc1o_p":2.0,
"ppc1r_p":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1241 or Gmet_1033 or Gmet_0148 or Gmet_3492 or Gmet_3170",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"FRDPPCR2"
]
},
"annotation":{
"bigg.reaction":[
"FRDPPCR2"
],
"metanetx.reaction":[
"MNXR99645"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FRNDPR2r",
"name":"Ferredoxin : nadp reductase",
"metabolites":{
"fdxo_42_c":1.0,
"fdxr_42_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"nadp_c":-2.0,
"nadph_c":2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3022 and Gmet_3023",
"objective_coefficient":5.55111512312578e-17,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"FRNDPR2r"
]
},
"annotation":{
"bigg.reaction":[
"FRNDPR2r"
],
"metanetx.reaction":[
"MNXR99648"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HDR3",
"name":"Heterodisulfide reductase (Geobacter)",
"metabolites":{
"dhlplarg_c":4.0,
"fdxo_42_c":1.0,
"fdxr_42_c":-1.0,
"h_c":-4.0,
"lplarg_c":-4.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"nadp_c":2.0,
"nadph_c":-2.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"Gmet_3424 and Gmet_3425 and Gmet_3426 and Gmet_3427 and Gmet_3428 and Gmet_3430 and Gmet_3431",
"objective_coefficient":0.00593012231279855,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"HDR3"
]
},
"annotation":{
"bigg.reaction":[
"HDR3"
],
"metanetx.reaction":[
"MNXR100589"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FTHFCL",
"name":"5 formethyltetrahydrofolate cyclo ligase",
"metabolites":{
"5fthf_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"methf_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1179",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"FTHFCL"
]
},
"annotation":{
"bigg.reaction":[
"FTHFCL"
],
"ec-code":[
"6.3.3.2"
],
"kegg.reaction":[
"R02301"
],
"metanetx.reaction":[
"MNXR99668"
],
"rhea":[
"10488",
"10491",
"10490",
"10489"
],
"sabiork":[
"2263"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01653"
]
}
},
{
"id":"FUM",
"name":"Fumarase",
"metabolites":{
"fum_c":-1.0,
"h2o_c":-1.0,
"mal__L_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2570",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"FUM"
]
},
"annotation":{
"bigg.reaction":[
"FUM"
],
"biocyc":[
"META:FUMHYDR-RXN"
],
"ec-code":[
"4.2.1.2"
],
"kegg.reaction":[
"R01082"
],
"metanetx.reaction":[
"MNXR99705"
],
"reactome.reaction":[
"R-TGU-451033",
"R-TGU-70982",
"R-HSA-70982",
"R-ATH-451033",
"R-SPO-70982",
"R-SPO-451033",
"R-XTR-451033",
"R-MMU-70982",
"R-DRE-70982",
"R-DME-70982",
"R-DME-451033",
"R-HSA-451033",
"R-SCE-451033",
"R-DDI-451033",
"R-OSA-451033",
"R-CFA-70982",
"R-XTR-70982",
"R-MMU-451033",
"R-OSA-70982",
"R-BTA-70982",
"R-DRE-451033",
"R-GGA-373141",
"R-RNO-451033",
"R-CEL-451033",
"R-ATH-70982",
"R-GGA-373145",
"R-CEL-70982",
"R-BTA-451033",
"R-SSC-451033",
"R-SCE-70982",
"R-CFA-451033",
"R-RNO-70982",
"R-GGA-70982",
"R-DDI-70982",
"R-GGA-451033",
"R-SSC-70982"
],
"rhea":[
"12463",
"12461",
"12462",
"12460"
],
"sabiork":[
"256"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00799"
]
}
},
{
"id":"GLUSx",
"name":"Glutamate synthase  NADH2 ",
"metabolites":{
"akg_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":2.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1752 and Gmet_1753 and Gmet_1754 and Gmet_1755 and Gmet_1756",
"objective_coefficient":-0.00658902479199847,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GLUSx"
]
},
"annotation":{
"bigg.reaction":[
"GLUSx"
],
"biocyc":[
"META:GLUTAMATE-SYNTHASE-NADH-RXN"
],
"ec-code":[
"1.4.1.14"
],
"kegg.reaction":[
"R00093"
],
"metanetx.reaction":[
"MNXR100289"
],
"rhea":[
"13753",
"13755",
"13756",
"13754"
],
"sabiork":[
"675"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00069"
]
}
},
{
"id":"GLUSz",
"name":"Glutamate synthase (Ferredoxin)",
"metabolites":{
"akg_c":-1.0,
"fdxo_42_c":1.0,
"fdxr_42_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":2.0,
"h_c":-2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0147",
"objective_coefficient":-0.00658902479199847,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GLUSz"
]
},
"annotation":{
"bigg.reaction":[
"GLUSz"
],
"metanetx.reaction":[
"MNXR100292"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GLUTCOADHc",
"name":"Glutaryl-CoA dehydrogenase (citosol)",
"metabolites":{
"b2coa_c":1.0,
"co2_c":1.0,
"fad_c":-1.0,
"fadh2_c":1.0,
"glutcoa_c":-1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2075",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"GLUTCOADHc"
]
},
"annotation":{
"bigg.reaction":[
"GLUTCOADHc"
],
"ec-code":[
"1.3.8.6",
"1.3.99.7"
],
"kegg.reaction":[
"R02487"
],
"metanetx.reaction":[
"MNXR100293"
],
"reactome.reaction":[
"R-OSA-71046",
"R-DRE-71046",
"R-HSA-71046",
"R-BTA-71046",
"R-CEL-71046",
"R-ATH-71046",
"R-SSC-71046",
"R-XTR-71046",
"R-DDI-71046",
"R-CFA-71046",
"R-MMU-71046",
"R-DME-71046",
"R-GGA-71046",
"R-RNO-71046"
],
"rhea":[
"30847",
"13389",
"30849",
"13392",
"30850",
"13390",
"13391",
"30848"
],
"sabiork":[
"2417"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01802"
]
}
},
{
"id":"GLUTRR",
"name":"Glutamyl-tRNA reductase",
"metabolites":{
"glu1sa_c":1.0,
"glutrna_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"trnaglu_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3233",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"GLUTRR"
]
},
"annotation":{
"bigg.reaction":[
"GLUTRR"
],
"ec-code":[
"1.2.1.70"
],
"kegg.reaction":[
"R04109"
],
"metanetx.reaction":[
"MNXR100294"
],
"sabiork":[
"9145"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06591"
]
}
},
{
"id":"GLUTRS",
"name":"Glutamyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"glu__L_c":-1.0,
"glutrna_c":1.0,
"ppi_c":1.0,
"trnaglu_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1736",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"GLUTRS"
]
},
"annotation":{
"bigg.reaction":[
"GLUTRS"
],
"ec-code":[
"6.1.1",
"6.1.1.17",
"6.1.1.24"
],
"kegg.reaction":[
"R05578"
],
"metanetx.reaction":[
"MNXR100295"
],
"reactome.reaction":[
"R-HSA-379861",
"R-HSA-380216"
],
"sabiork":[
"5179"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06937"
]
}
},
{
"id":"FUTH",
"name":"Futalosine hydrolase",
"metabolites":{
"dhxfut_c":1.0,
"fut_c":-1.0,
"h2o_c":-1.0,
"hxan_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3381",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"FUTH"
]
},
"annotation":{
"bigg.reaction":[
"FUTH"
],
"biocyc":[
"META:RXN-9780"
],
"ec-code":[
"3.2.2.26"
],
"kegg.reaction":[
"R08587"
],
"metanetx.reaction":[
"MNXR99765"
],
"rhea":[
"25906",
"25907",
"25904",
"25905"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn14263"
]
}
},
{
"id":"FUTS",
"name":"Futalosine synthase",
"metabolites":{
"chor_c":-1.0,
"co2_c":1.0,
"fut_c":1.0,
"h_c":-1.0,
"imp_c":-1.0,
"pep_c":-1.0,
"pi_c":2.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0986",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"FUTS"
]
},
"annotation":{
"bigg.reaction":[
"FUTS"
],
"metanetx.reaction":[
"MNXR99766"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GLYCLTDx",
"name":"Glycolate dehydrogenase (NAD)",
"metabolites":{
"glx_c":-1.0,
"glyclt_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3011",
"objective_coefficient":-0.00593012231279855,
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCLTDx"
]
},
"annotation":{
"bigg.reaction":[
"GLYCLTDx"
],
"biocyc":[
"META:GLYCOLATE-REDUCTASE-RXN"
],
"ec-code":[
"1.1.1.79",
"1.1.1.26",
"1.1.1.29"
],
"kegg.reaction":[
"R00717"
],
"metanetx.reaction":[
"MNXR100331"
],
"rhea":[
"18231",
"18230",
"18232",
"18229"
],
"sabiork":[
"425"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00512"
]
}
},
{
"id":"G1PACT",
"name":"Glucosamine-1-phosphate N-acetyltransferase",
"metabolites":{
"accoa_c":-1.0,
"acgam1p_c":1.0,
"coa_c":1.0,
"gam1p_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0103",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"G1PACT"
]
},
"annotation":{
"bigg.reaction":[
"G1PACT"
],
"ec-code":[
"2.3.1.4",
"2.3.1.157"
],
"metanetx.reaction":[
"MNXR99841"
],
"sabiork":[
"4940"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03638"
]
}
},
{
"id":"G1PTT",
"name":"Glucose-1-phosphate thymidylyltransferase",
"metabolites":{
"dtdpglu_c":1.0,
"dttp_c":-1.0,
"g1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0924",
"objective_coefficient":-0.20393031731235,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"G1PTT"
]
},
"annotation":{
"bigg.reaction":[
"G1PTT"
],
"biocyc":[
"META:DTDPGLUCOSEPP-RXN"
],
"ec-code":[
"2.7.7.24"
],
"kegg.reaction":[
"R02328"
],
"metanetx.reaction":[
"MNXR99846"
],
"rhea":[
"15226",
"15227",
"15225",
"15228"
],
"sabiork":[
"2281"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01675"
]
}
},
{
"id":"G1SAT",
"name":"Glutamate-1-semialdehyde aminotransferase",
"metabolites":{
"5aop_c":1.0,
"glu1sa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3356",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"G1SAT"
]
},
"annotation":{
"bigg.reaction":[
"G1SAT"
],
"biocyc":[
"META:GSAAMINOTRANS-RXN"
],
"ec-code":[
"5.4.3.8"
],
"kegg.reaction":[
"R02272"
],
"metanetx.reaction":[
"MNXR99850"
],
"rhea":[
"14265",
"14267",
"14268",
"14266"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01629"
]
}
},
{
"id":"GLYCTO3",
"name":"Glycolate oxidase",
"metabolites":{
"glx_c":1.0,
"glyclt_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3245 and Gmet_3246",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCTO3"
]
},
"annotation":{
"bigg.reaction":[
"GLYCTO3"
],
"metanetx.reaction":[
"MNXR100340"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08656"
]
}
},
{
"id":"GLYCtex",
"name":"Glycerol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyc_e":-1.0,
"glyc_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYCtex"
]
},
"annotation":{
"bigg.reaction":[
"GLYCtex"
],
"biocyc":[
"META:TRANS-RXN-131"
],
"metanetx.reaction":[
"MNXR100343"
],
"reactome.reaction":[
"R-RNO-507871",
"R-SCE-507871",
"R-MMU-432049",
"R-GGA-507869",
"R-SCE-432049",
"R-MMU-507869",
"R-CEL-507869",
"R-SPO-432049",
"R-TGU-432049",
"R-HSA-507871",
"R-PFA-432074",
"R-GGA-432049",
"R-PFA-432049",
"R-BTA-432049",
"R-MMU-507871",
"R-CEL-507871",
"R-XTR-507871",
"R-HSA-507869",
"R-SCE-507869",
"R-DRE-507869",
"R-PFA-507869",
"R-TGU-507869",
"R-RNO-507869",
"R-MMU-432074",
"R-SPO-432074",
"R-BTA-432074",
"R-CFA-432074",
"R-CEL-432074",
"R-PFA-507871",
"R-SSC-432074",
"R-CFA-507871",
"R-SPO-507871",
"R-BTA-507871",
"R-XTR-432049",
"R-HSA-432049",
"R-DRE-432074",
"R-CFA-432049",
"R-SPO-507869",
"R-GGA-432074",
"R-HSA-432074",
"R-RNO-432074",
"R-SCE-432074",
"R-TGU-507871",
"R-GGA-507871",
"R-DRE-432049",
"R-BTA-507869",
"R-SSC-507871",
"R-XTR-432074",
"R-XTR-507869",
"R-CFA-507869",
"R-RNO-432049",
"R-SSC-507869",
"R-SSC-432049",
"R-TGU-432074",
"R-CEL-432049",
"R-DRE-507871"
],
"rhea":[
"29676",
"29678",
"29677",
"29675"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05581",
"rxn08654",
"rxn08658"
]
}
},
{
"id":"GLYCtpp",
"name":"Glycerol transport via channel (periplasm)",
"metabolites":{
"glyc_c":-1.0,
"glyc_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYCtpp"
]
},
"annotation":{
"bigg.reaction":[
"GLYCtpp"
],
"biocyc":[
"META:TRANS-RXN-131"
],
"metanetx.reaction":[
"MNXR100343"
],
"reactome.reaction":[
"R-RNO-507871",
"R-SCE-507871",
"R-MMU-432049",
"R-GGA-507869",
"R-SCE-432049",
"R-MMU-507869",
"R-CEL-507869",
"R-SPO-432049",
"R-TGU-432049",
"R-HSA-507871",
"R-PFA-432074",
"R-GGA-432049",
"R-PFA-432049",
"R-BTA-432049",
"R-MMU-507871",
"R-CEL-507871",
"R-XTR-507871",
"R-HSA-507869",
"R-SCE-507869",
"R-DRE-507869",
"R-PFA-507869",
"R-TGU-507869",
"R-RNO-507869",
"R-MMU-432074",
"R-SPO-432074",
"R-BTA-432074",
"R-CFA-432074",
"R-CEL-432074",
"R-PFA-507871",
"R-SSC-432074",
"R-CFA-507871",
"R-SPO-507871",
"R-BTA-507871",
"R-XTR-432049",
"R-HSA-432049",
"R-DRE-432074",
"R-CFA-432049",
"R-SPO-507869",
"R-GGA-432074",
"R-HSA-432074",
"R-RNO-432074",
"R-SCE-432074",
"R-TGU-507871",
"R-GGA-507871",
"R-DRE-432049",
"R-BTA-507869",
"R-SSC-507871",
"R-XTR-432074",
"R-XTR-507869",
"R-CFA-507869",
"R-RNO-432049",
"R-SSC-507869",
"R-SSC-432049",
"R-TGU-432074",
"R-CEL-432049",
"R-DRE-507871"
],
"rhea":[
"29676",
"29678",
"29677",
"29675"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05581",
"rxn08654",
"rxn08658"
]
}
},
{
"id":"GLYK",
"name":"Glycerol kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glyc3p_c":1.0,
"glyc_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1676",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"GLYK"
]
},
"annotation":{
"bigg.reaction":[
"GLYK"
],
"biocyc":[
"META:GLYCEROL-KIN-RXN"
],
"ec-code":[
"2.7.1.30"
],
"kegg.reaction":[
"R00847"
],
"metanetx.reaction":[
"MNXR100348"
],
"reactome.reaction":[
"R-DME-75887",
"R-TGU-75887",
"R-CFA-75887",
"R-MMU-75887",
"R-DDI-75887",
"R-HSA-75887",
"R-XTR-75887",
"R-OSA-75887",
"R-SCE-75887",
"R-RNO-75887",
"R-CEL-75887",
"R-DRE-75887",
"R-ATH-75887",
"R-SSC-75887",
"R-BTA-75887",
"R-GGA-75887",
"R-PFA-75887"
],
"rhea":[
"21644",
"21645",
"21647",
"21646"
],
"sabiork":[
"99"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00615"
]
}
},
{
"id":"G3PD1ir",
"name":"Glycerol 3 phosphate dehydrogenase  NAD ",
"metabolites":{
"dhap_c":-1.0,
"glyc3p_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0008",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"G3PD1"
]
},
"annotation":{
"bigg.reaction":[
"G3PD1ir"
],
"biocyc":[
"META:1.1.1.8-RXN"
],
"ec-code":[
"1.1.1.8",
"1.1.1.94"
],
"kegg.reaction":[
"R00842"
],
"metanetx.reaction":[
"MNXR99876"
],
"reactome.reaction":[
"R-CFA-75889",
"R-HSA-75889",
"R-PFA-75889",
"R-XTR-75889",
"R-BTA-75889",
"R-DRE-75889",
"R-TGU-75889",
"R-GGA-75889",
"R-OSA-75889",
"R-SSC-75889",
"R-SPO-75889",
"R-DME-75889",
"R-SCE-75889",
"R-MMU-75889",
"R-CEL-75889",
"R-ATH-75889",
"R-RNO-75889"
],
"rhea":[
"11092",
"11093",
"11095",
"11094"
],
"sabiork":[
"1183"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00611"
]
}
},
{
"id":"GLYTA",
"name":"Glycine transaminase",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"glx_c":-1.0,
"gly_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3173",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLYTA"
]
},
"annotation":{
"bigg.reaction":[
"GLYTA"
],
"biocyc":[
"META:GLYCINE-AMINOTRANSFERASE-RXN"
],
"ec-code":[
"2.6.1.4",
"2.6.1.44"
],
"kegg.reaction":[
"R00372"
],
"metanetx.reaction":[
"MNXR100364"
],
"rhea":[
"14090",
"14091",
"14089",
"14092"
],
"sabiork":[
"839"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00275"
]
}
},
{
"id":"G3PD2",
"name":"Glycerol-3-phosphate dehydrogenase (NADP)",
"metabolites":{
"dhap_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":0.0,
"gene_reaction_rule":"Gmet_0008",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"G3PD2"
]
},
"annotation":{
"bigg.reaction":[
"G3PD2"
],
"ec-code":[
"1.1.1.94"
],
"kegg.reaction":[
"R00844"
],
"metanetx.reaction":[
"MNXR99877"
],
"rhea":[
"11096",
"11099",
"11098",
"11097"
],
"sabiork":[
"1184"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00612"
]
}
},
{
"id":"HEMEOS",
"name":"Heme O synthase",
"metabolites":{
"frdp_c":-1.0,
"h2o_c":-1.0,
"hemeO_c":1.0,
"pheme_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0253",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"HEMEOS"
]
},
"annotation":{
"bigg.reaction":[
"HEMEOS"
],
"ec-code":[
"2.5.1.-"
],
"kegg.reaction":[
"R07411"
],
"metanetx.reaction":[
"MNXR100596"
],
"reactome.reaction":[
"R-OSA-2995330",
"R-SPO-2995330",
"R-HSA-2995330",
"R-BTA-2995330",
"R-ATH-2995330",
"R-SSC-2995330",
"R-DDI-2995330",
"R-PFA-2995330",
"R-DRE-2995330",
"R-MMU-2995330",
"R-DME-2995330",
"R-RNO-2995330",
"R-TGU-2995330",
"R-SCE-2995330",
"R-XTR-2995330",
"R-CEL-2995330",
"R-GGA-2995330",
"R-CFA-2995330"
],
"rhea":[
"28073",
"28070",
"28071",
"28072"
],
"sbo":"SBO:0000176"
}
},
{
"id":"G3PD",
"name":"Glycerol-3-phosphate dehydrogenase (FAD)",
"metabolites":{
"dhap_c":1.0,
"fad_c":-1.0,
"fadh2_c":1.0,
"glyc3p_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":0.0,
"gene_reaction_rule":"Gmet_1677",
"objective_coefficient":-5.55111512312578e-17,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"G3PDr"
]
},
"annotation":{
"bigg.reaction":[
"G3PD"
],
"ec-code":[
"1.1.99.5",
"1.1.5.3"
],
"kegg.reaction":[
"R00848"
],
"metanetx.reaction":[
"MNXR99875"
],
"reactome.reaction":[
"R-ATH-188467",
"R-MMU-188467",
"R-DDI-188467",
"R-BTA-188467",
"R-SCE-188467",
"R-GGA-188467",
"R-SSC-188467",
"R-PFA-188467",
"R-OSA-188467",
"R-SPO-188467",
"R-DRE-188467",
"R-RNO-188467",
"R-CEL-188467",
"R-XTR-188467",
"R-CFA-188467",
"R-TGU-188467",
"R-HSA-188467",
"R-DME-188467"
],
"rhea":[
"31283",
"31285",
"31284",
"31286"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00616"
]
}
},
{
"id":"G5SADs",
"name":"L-glutamate 5-semialdehyde dehydratase (spontaneous)",
"metabolites":{
"1pyr5c_c":1.0,
"glu5sa_c":-1.0,
"h2o_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"s_0001",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"G5SADs"
]
},
"annotation":{
"bigg.reaction":[
"G5SADs"
],
"biocyc":[
"META:SPONTPRO-RXN"
],
"kegg.reaction":[
"R03314"
],
"metanetx.reaction":[
"MNXR99897"
],
"reactome.reaction":[
"R-HSA-70655",
"R-HSA-70667"
],
"rhea":[
"28237",
"28234",
"28235",
"28236"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11220",
"rxn02374"
]
}
},
{
"id":"G5SD",
"name":"Glutamate-5-semialdehyde dehydrogenase",
"metabolites":{
"glu5p_c":-1.0,
"glu5sa_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3199",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"G5SD"
]
},
"annotation":{
"bigg.reaction":[
"G5SD"
],
"biocyc":[
"META:GLUTSEMIALDEHYDROG-RXN"
],
"ec-code":[
"1.2.1.41"
],
"kegg.reaction":[
"R03313"
],
"metanetx.reaction":[
"MNXR99896"
],
"rhea":[
"19541",
"19543",
"19544",
"19542"
],
"sabiork":[
"3127"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02373"
]
}
},
{
"id":"G6PDH2r",
"name":"Glucose 6-phosphate dehydrogenase",
"metabolites":{
"6pgl_c":1.0,
"g6p_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2619",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"G6PDH2r"
]
},
"annotation":{
"bigg.reaction":[
"G6PDH2r"
],
"biocyc":[
"META:GLU6PDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.363",
"1.1.1.49"
],
"kegg.reaction":[
"R00835"
],
"metanetx.reaction":[
"MNXR99907"
],
"rhea":[
"15842",
"15843",
"15841",
"15844"
],
"sabiork":[
"1176",
"6509"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00604"
]
}
},
{
"id":"GLYTRS",
"name":"Glycyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gly_c":-1.0,
"glytrna_c":1.0,
"ppi_c":1.0,
"trnagly_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2941 and Gmet_2942",
"objective_coefficient":-0.0220732330531948,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GLYTRS"
]
},
"annotation":{
"bigg.reaction":[
"GLYTRS"
],
"ec-code":[
"6.1.1.14"
],
"kegg.reaction":[
"R03654"
],
"metanetx.reaction":[
"MNXR100365"
],
"reactome.reaction":[
"R-HSA-380240",
"R-HSA-380048"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06438"
]
}
},
{
"id":"GM1LIPA3ODAex",
"name":"Geobacter metallireducens Lipid A (variant 1) 3-O-deacetylase (n-C14:0) (extracellular membrane)",
"metabolites":{
"3httdca_e":1.0,
"gm1lipa_e":-1.0,
"gm1lipb_e":1.0,
"h2o_e":-1.0,
"h_e":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1704",
"objective_coefficient":-1.72928955665997,
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GM1LIPA3ODAex"
]
},
"annotation":{
"bigg.reaction":[
"GM1LIPA3ODAex"
],
"metanetx.reaction":[
"MNXR100372"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GM1LIPAabcpp",
"name":"Geobacter metallireucens modelified lipid A transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hghhlipa_c":-1.0,
"hghhlipa_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GM1LIPAabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GM1LIPAabcpp"
],
"metanetx.reaction":[
"MNXR100373"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GM1LIPAabctex",
"name":"G. metallireducens core lipid A transport via ABC system (periplasm to extracellular)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gm1lipa_e":1.0,
"gm1lipa_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1281 and Gmet_1282 and Gmet_1280 and Gmet_2474 and Gmet_2299 and Gmet_1249 and Gmet_1248",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GM1LIPAabctex"
]
},
"annotation":{
"bigg.reaction":[
"GM1LIPAabctex"
],
"metanetx.reaction":[
"MNXR100374"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GM2LIPAabcpp",
"name":"Geobacter metallireucens modelified lipid A transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hghhlipan_c":-1.0,
"hghhlipan_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GM2LIPAabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GM2LIPAabcpp"
],
"metanetx.reaction":[
"MNXR100375"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GM2LIPAabctex",
"name":"G. metallireducens core lipid A transport via ABC system (periplasm to extracellular)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gm2lipa_e":1.0,
"gm2lipa_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1281 and Gmet_1282 and Gmet_1280 and Gmet_2474 and Gmet_2299 and Gmet_1249 and Gmet_1248",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GM2LIPAabctex"
]
},
"annotation":{
"bigg.reaction":[
"GM2LIPAabctex"
],
"metanetx.reaction":[
"MNXR100376"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GMAND",
"name":"GDP-D-mannose dehydratase",
"metabolites":{
"gdpddman_c":1.0,
"gdpmann_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1488 or Gmet_1311",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GMAND"
]
},
"annotation":{
"bigg.reaction":[
"GMAND"
],
"biocyc":[
"META:GDPMANDEHYDRA-RXN"
],
"ec-code":[
"4.2.1.47"
],
"kegg.reaction":[
"R00888"
],
"metanetx.reaction":[
"MNXR100377"
],
"rhea":[
"23823",
"23822",
"23820",
"23821"
],
"sabiork":[
"588"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00642"
]
}
},
{
"id":"GMHEPAT",
"name":"D-glycero-D-manno-hepose 1-phosphate adenyltransferase",
"metabolites":{
"adphep_DD_c":1.0,
"atp_c":-1.0,
"gmhep1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0922",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GMHEPAT"
]
},
"annotation":{
"bigg.reaction":[
"GMHEPAT"
],
"biocyc":[
"META:RXN0-4342"
],
"ec-code":[
"2.7.7.70"
],
"kegg.reaction":[
"R05644"
],
"metanetx.reaction":[
"MNXR100378"
],
"rhea":[
"27468",
"27466",
"27467",
"27465"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13940",
"rxn03916"
]
}
},
{
"id":"GALUi",
"name":"UTP-glucose-1-phosphate uridylyltransferase (irreversible)",
"metabolites":{
"g1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0,
"udpg_c":1.0,
"utp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1159",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GALU"
]
},
"annotation":{
"bigg.reaction":[
"GALUi"
],
"biocyc":[
"META:GLUC1PURIDYLTRANS-RXN"
],
"ec-code":[
"2.7.7.9",
"2.7.7.64"
],
"kegg.reaction":[
"R00289"
],
"metanetx.reaction":[
"MNXR143121"
],
"reactome.reaction":[
"R-HSA-70286",
"R-DME-70286",
"R-BTA-70286",
"R-DDI-70286",
"R-CEL-70286",
"R-OSA-70286",
"R-RNO-70286",
"R-SCE-70286",
"R-SPO-70286",
"R-ATH-70286",
"R-DRE-70286",
"R-SSC-70286",
"R-XTR-70286",
"R-CFA-70286",
"R-MMU-70286",
"R-GGA-70286",
"R-TGU-70286"
],
"rhea":[
"19889",
"19892",
"19890",
"19891"
],
"sabiork":[
"8973",
"68"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00213"
]
}
},
{
"id":"GALURt2rpp",
"name":"D-galacturonate transport via proton symport, reversible (periplasm)",
"metabolites":{
"galur_c":1.0,
"galur_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3221",
"objective_coefficient":-0.00197670743759953,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"GALURt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GALURt2rpp"
],
"metanetx.reaction":[
"MNXR100020"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08588",
"rxn05673"
]
}
},
{
"id":"GALURtex",
"name":"D-galacturonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"galur_e":-1.0,
"galur_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"GALURtex"
]
},
"annotation":{
"bigg.reaction":[
"GALURtex"
],
"metanetx.reaction":[
"MNXR100021"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08589"
]
}
},
{
"id":"GAPD",
"name":"Glyceraldehyde-3-phosphate dehydrogenase",
"metabolites":{
"13dpg_c":1.0,
"g3p_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pi_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1946 or Gmet_1211",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"GAPD"
]
},
"annotation":{
"bigg.reaction":[
"GAPD"
],
"biocyc":[
"META:GAPOXNPHOSPHN-RXN"
],
"ec-code":[
"1.2.1.12",
"1.2.1.59"
],
"kegg.reaction":[
"R01061"
],
"metanetx.reaction":[
"MNXR100040"
],
"reactome.reaction":[
"R-ATH-70482",
"R-DME-70449",
"R-PFA-70482",
"R-SPO-70449",
"R-DRE-70449",
"R-CEL-70449",
"R-CEL-70482",
"R-CFA-70449",
"R-MMU-70482",
"R-HSA-70449",
"R-OSA-70482",
"R-GGA-352956",
"R-RNO-70449",
"R-SCE-70449",
"R-SSC-70482",
"R-ATH-70449",
"R-GGA-70482",
"R-OSA-70449",
"R-GGA-352921",
"R-DDI-70449",
"R-SPO-70482",
"R-TGU-70482",
"R-SCE-70482",
"R-HSA-70482",
"R-DME-70482",
"R-PFA-70449",
"R-XTR-70449",
"R-DRE-70482",
"R-XTR-70482",
"R-GGA-70449",
"R-RNO-70482",
"R-SSC-70449",
"R-DDI-70482",
"R-TGU-70449",
"R-MMU-70449",
"R-CFA-70482",
"R-BTA-70449",
"R-BTA-70482"
],
"rhea":[
"10303",
"10300",
"10302",
"10301"
],
"sabiork":[
"7844"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00781"
]
}
},
{
"id":"GMHEPK",
"name":"D-glycero-D-manno-heptose 7-phosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gmhep17bp_c":1.0,
"gmhep7p_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0922",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GMHEPK"
]
},
"annotation":{
"bigg.reaction":[
"GMHEPK"
],
"metanetx.reaction":[
"MNXR143147"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HEPT1",
"name":"Heptosyltransferase I (LPS core synthesis)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"h_c":1.0,
"hlipa_c":1.0,
"lipa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2331",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"HEPT1"
]
},
"annotation":{
"bigg.reaction":[
"HEPT1"
],
"ec-code":[
"2.4"
],
"metanetx.reaction":[
"MNXR100602"
],
"rhea":[
"28404",
"28405",
"28402",
"28403"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08710"
]
}
},
{
"id":"GMHEPPA",
"name":"D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase",
"metabolites":{
"gmhep17bp_c":-1.0,
"gmhep1p_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0923",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GMHEPPA"
]
},
"annotation":{
"bigg.reaction":[
"GMHEPPA"
],
"metanetx.reaction":[
"MNXR100380"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GMPS2",
"name":"GMP synthase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"gmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"ppi_c":1.0,
"xmp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2292",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GMPS2"
]
},
"annotation":{
"bigg.reaction":[
"GMPS2"
],
"biocyc":[
"META:GMP-SYN-GLUT-RXN"
],
"ec-code":[
"6.3.5.2"
],
"kegg.reaction":[
"R01231"
],
"metanetx.reaction":[
"MNXR100384"
],
"rhea":[
"11680",
"11682",
"11681",
"11683"
],
"sabiork":[
"215"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00917"
]
}
},
{
"id":"GARFT",
"name":"Phosphoribosylglycinamide formyltransferase",
"metabolites":{
"10fthf_c":-1.0,
"fgam_c":1.0,
"gar_c":-1.0,
"h_c":1.0,
"thf_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1845",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GARFT"
]
},
"annotation":{
"bigg.reaction":[
"GARFT"
],
"ec-code":[
"2.1.2.2"
],
"kegg.reaction":[
"R04325"
],
"metanetx.reaction":[
"MNXR99623"
],
"rhea":[
"15053",
"15054",
"15055",
"15056"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GART",
"name":"GAR transformylase-T",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fgam_c":1.0,
"for_c":-1.0,
"gar_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3193",
"objective_coefficient":-0.00494176859399878,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GART"
]
},
"annotation":{
"bigg.reaction":[
"GART"
],
"biocyc":[
"META:GARTRANSFORMYL2-RXN"
],
"ec-code":[
"2.1.2.-",
"2.1.2"
],
"kegg.reaction":[
"R06974"
],
"metanetx.reaction":[
"MNXR100042"
],
"rhea":[
"24830",
"24832",
"24831",
"24829"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04783"
]
}
},
{
"id":"GCALDD",
"name":"Glycolaldehyde dehydrogenase",
"metabolites":{
"gcald_c":-1.0,
"glyclt_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GCALDD"
]
},
"annotation":{
"bigg.reaction":[
"GCALDD"
],
"biocyc":[
"META:GLYCOLALD-DEHYDROG-RXN"
],
"ec-code":[
"1.2.1.21"
],
"kegg.reaction":[
"R01333"
],
"metanetx.reaction":[
"MNXR100060"
],
"rhea":[
"20004",
"20002",
"20001",
"20003"
],
"sabiork":[
"434"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00979"
]
}
},
{
"id":"GCCa",
"name":"Glycine-cleavage complex",
"metabolites":{
"alpro_c":1.0,
"co2_c":1.0,
"gly_c":-1.0,
"h_c":-1.0,
"lpro_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3154 and (Gmet_3152 and Gmet_3153)",
"subsystem":"Folate Metabolism",
"notes":{
"original_bigg_ids":[
"GCCa"
]
},
"annotation":{
"bigg.reaction":[
"GCCa"
],
"ec-code":[
"1.4.4.2"
],
"kegg.reaction":[
"R03425"
],
"metanetx.reaction":[
"MNXR100067"
],
"sabiork":[
"3223"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06377"
]
}
},
{
"id":"GCCb",
"name":"Glycine cleavage complex",
"metabolites":{
"alpro_c":-1.0,
"dhlpro_c":1.0,
"mlthf_c":1.0,
"nh4_c":1.0,
"thf_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3155",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GCCb"
]
},
"annotation":{
"bigg.reaction":[
"GCCb"
],
"ec-code":[
"2.1.2.10"
],
"kegg.reaction":[
"R04125"
],
"metanetx.reaction":[
"MNXR100068"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GND",
"name":"Phosphogluconate dehydrogenase",
"metabolites":{
"6pgc_c":-1.0,
"co2_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"ru5p__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2620",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"GND"
]
},
"annotation":{
"bigg.reaction":[
"GND"
],
"biocyc":[
"META:RXN-9952"
],
"ec-code":[
"1.1.1.44",
"1.1.1.351"
],
"kegg.reaction":[
"R01528"
],
"metanetx.reaction":[
"MNXR100389"
],
"reactome.reaction":[
"R-PFA-71299",
"R-GGA-71299",
"R-HSA-71299",
"R-SPO-71299",
"R-XTR-71299",
"R-ATH-71299",
"R-TGU-71299",
"R-OSA-71299",
"R-MMU-71299",
"R-DRE-71299",
"R-SCE-71299",
"R-SSC-71299",
"R-DDI-71299",
"R-CFA-71299",
"R-DME-71299",
"R-BTA-71299",
"R-CEL-71299"
],
"rhea":[
"10116",
"10117",
"10118",
"10119"
],
"sabiork":[
"108"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01115"
]
}
},
{
"id":"GOFUCR",
"name":"GDP-4-oxo-L-fucose reductase",
"metabolites":{
"gdpfuc_c":1.0,
"gdpofuc_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1312",
"objective_coefficient":-0.00395341487519907,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GOFUCR"
]
},
"annotation":{
"bigg.reaction":[
"GOFUCR"
],
"ec-code":[
"1.1.1.271"
],
"metanetx.reaction":[
"MNXR100393"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08666"
]
}
},
{
"id":"GRTT",
"name":"Geranyltranstransferase",
"metabolites":{
"frdp_c":1.0,
"grdp_c":-1.0,
"ipdp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1935 or Gmet_2455",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"GRTT"
]
},
"annotation":{
"bigg.reaction":[
"GRTT"
],
"biocyc":[
"META:FPPSYN-RXN"
],
"ec-code":[
"2.5.1.10"
],
"kegg.reaction":[
"R02003"
],
"metanetx.reaction":[
"MNXR99634"
],
"reactome.reaction":[
"R-BTA-191303",
"R-CFA-191303",
"R-CEL-191303",
"R-ATH-191303",
"R-DME-191303",
"R-OSA-191303",
"R-RNO-191303",
"R-GGA-191303",
"R-SCE-191303",
"R-PFA-191303",
"R-SPO-191303",
"R-SSC-191303",
"R-TGU-191303",
"R-HSA-191303",
"R-XTR-191303",
"R-DDI-191303",
"R-DRE-191303",
"R-MMU-191303"
],
"rhea":[
"19361",
"19364",
"19362",
"19363"
],
"sabiork":[
"2041"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01466"
]
}
},
{
"id":"GTPCI",
"name":"GTP cyclohydrolase I",
"metabolites":{
"ahdt_c":1.0,
"for_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3074",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTPCI"
]
},
"annotation":{
"bigg.reaction":[
"GTPCI"
],
"biocyc":[
"META:GTP-CYCLOHYDRO-I-RXN"
],
"ec-code":[
"3.5.4.16"
],
"kegg.reaction":[
"R00424"
],
"metanetx.reaction":[
"MNXR100453"
],
"reactome.reaction":[
"R-ATH-1474146",
"R-TGU-1474146",
"R-DRE-1474146",
"R-DDI-1474146",
"R-XTR-1474146",
"R-DME-1474146",
"R-MMU-1474146",
"R-CEL-1474146",
"R-PFA-1474146",
"R-RNO-1474146",
"R-HSA-1474146",
"R-BTA-1474146",
"R-SPO-1474146",
"R-GGA-1474146",
"R-OSA-1474146",
"R-CFA-1474146",
"R-SCE-1474146"
],
"rhea":[
"17476",
"17473",
"17474",
"17475"
],
"sabiork":[
"9177"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00299",
"rxn11232"
]
}
},
{
"id":"GCCc",
"name":"Glycine-cleavage complex",
"metabolites":{
"dhlpro_c":-1.0,
"h_c":1.0,
"lpro_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1896 or Gmet_2764",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GCCc"
]
},
"annotation":{
"bigg.reaction":[
"GCCc"
],
"ec-code":[
"1.8.1.4"
],
"kegg.reaction":[
"R03815"
],
"metanetx.reaction":[
"MNXR100069"
],
"sabiork":[
"9140"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06493"
]
}
},
{
"id":"GDMANE",
"name":"GDP-4-dehydro-6-deoxy-D-mannose epimerase",
"metabolites":{
"gdpddman_c":-1.0,
"gdpofuc_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1312",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GDMANE"
]
},
"annotation":{
"bigg.reaction":[
"GDMANE"
],
"ec-code":[
"5"
],
"metanetx.reaction":[
"MNXR100087"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08597"
]
}
},
{
"id":"GTPCII2",
"name":"GTP cyclohydrolase II (25drapp)",
"metabolites":{
"25drapp_c":1.0,
"for_c":1.0,
"gtp_c":-1.0,
"h2o_c":-3.0,
"h_c":2.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1626",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTPCII2"
]
},
"annotation":{
"bigg.reaction":[
"GTPCII2"
],
"biocyc":[
"META:GTP-CYCLOHYDRO-II-RXN"
],
"ec-code":[
"3.5.4.25"
],
"kegg.reaction":[
"R00425"
],
"metanetx.reaction":[
"MNXR100455"
],
"rhea":[
"23707",
"23705",
"23706",
"23704"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GDPDPK",
"name":"GDP diphosphokinase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gdp_c":-1.0,
"h_c":1.0,
"ppgpp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2325",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GDPDPK"
]
},
"annotation":{
"bigg.reaction":[
"GDPDPK"
],
"biocyc":[
"META:GDPPYPHOSKIN-RXN"
],
"ec-code":[
"2.7.6.5"
],
"metanetx.reaction":[
"MNXR100088"
],
"rhea":[
"28098",
"28101",
"28099",
"28100"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08598"
]
}
},
{
"id":"GTPDPK",
"name":"GTP diphosphokinase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gdptp_c":1.0,
"gtp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2325",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GTPDPK"
]
},
"annotation":{
"bigg.reaction":[
"GTPDPK"
],
"biocyc":[
"META:GTPPYPHOSKIN-RXN"
],
"ec-code":[
"2.7.6.5"
],
"kegg.reaction":[
"R00429"
],
"metanetx.reaction":[
"MNXR100457"
],
"rhea":[
"22091",
"22089",
"22088",
"22090"
],
"sabiork":[
"236"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00303"
]
}
},
{
"id":"HEPT1N",
"name":"Heptosyltransferase I (LPS core synthesis) (glucosediaminyl)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"h_c":1.0,
"hlipan_c":1.0,
"lipan_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2331",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"HEPT1N"
]
},
"annotation":{
"bigg.reaction":[
"HEPT1N"
],
"metanetx.reaction":[
"MNXR100603"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GUAPRT",
"name":"Guanine phosphoribosyltransferase",
"metabolites":{
"gmp_c":1.0,
"gua_c":-1.0,
"ppi_c":1.0,
"prpp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2716",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GUAPRTr"
]
},
"annotation":{
"bigg.reaction":[
"GUAPRT"
],
"biocyc":[
"META:GUANPRIBOSYLTRAN-RXN"
],
"ec-code":[
"2.4.2.8",
"2.4.2.7",
"2.4.2.22"
],
"kegg.reaction":[
"R01229"
],
"metanetx.reaction":[
"MNXR100409"
],
"rhea":[
"25427",
"25426",
"25424",
"25425"
],
"sabiork":[
"195"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00915"
]
}
},
{
"id":"GUAt2pp",
"name":"Guanine transport in via proton symport (periplasm)",
"metabolites":{
"gua_c":1.0,
"gua_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2715",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"GUAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GUAt2pp"
],
"metanetx.reaction":[
"MNXR100466"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08681",
"rxn05203"
]
}
},
{
"id":"GUAtex",
"name":"Guanine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gua_e":-1.0,
"gua_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"GUAtex"
]
},
"annotation":{
"bigg.reaction":[
"GUAtex"
],
"biocyc":[
"META:TRANS-RXN0-578"
],
"metanetx.reaction":[
"MNXR100465"
],
"sabiork":[
"12299"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10142",
"rxn08683",
"rxn08682",
"rxn09746"
]
}
},
{
"id":"GDPTPDP",
"name":"Guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase",
"metabolites":{
"gdptp_c":-1.0,
"gtp_c":1.0,
"h2o_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GDPTPDP"
]
},
"annotation":{
"bigg.reaction":[
"GDPTPDP"
],
"biocyc":[
"META:RXN0-6427"
],
"ec-code":[
"3.1.7.2"
],
"metanetx.reaction":[
"MNXR100094"
],
"rhea":[
"33058",
"33057",
"33056",
"33055"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GF6PTA",
"name":"Glutamine-fructose-6-phosphate transaminase",
"metabolites":{
"f6p_c":-1.0,
"gam6p_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1487 or Gmet_0104",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GF6PTA"
]
},
"annotation":{
"bigg.reaction":[
"GF6PTA"
],
"biocyc":[
"META:L-GLN-FRUCT-6-P-AMINOTRANS-RXN"
],
"ec-code":[
"2.6.1.16"
],
"metanetx.reaction":[
"MNXR100107"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GHBDHy",
"name":"Gamma-hydroxybutyrate dehydrogenase (NADPH)",
"metabolites":{
"ghb_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"sucsal_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3011",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"GHBDHy"
]
},
"annotation":{
"bigg.reaction":[
"GHBDHy"
],
"biocyc":[
"META:RXN-11002"
],
"ec-code":[
"1.1.1.co",
"1.1.1.-"
],
"kegg.reaction":[
"R09281"
],
"metanetx.reaction":[
"MNXR100141"
],
"rhea":[
"26381",
"26383",
"26382",
"26384"
],
"sabiork":[
"10705"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GHMT2r",
"name":"Glycine hydroxymethyltransferase, reversible",
"metabolites":{
"gly_c":1.0,
"h2o_c":1.0,
"mlthf_c":1.0,
"ser__L_c":-1.0,
"thf_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1605",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"GHMT2r"
]
},
"annotation":{
"bigg.reaction":[
"GHMT2r"
],
"ec-code":[
"2.1.2.1"
],
"kegg.reaction":[
"R00945"
],
"metanetx.reaction":[
"MNXR100142"
],
"rhea":[
"15481",
"15483",
"15484",
"15482"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GK1",
"name":"Guanylate kinase (GMP:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gdp_c":1.0,
"gmp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2327",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"GK1"
]
},
"annotation":{
"bigg.reaction":[
"GK1"
],
"biocyc":[
"META:GUANYL-KIN-RXN"
],
"ec-code":[
"2.7.4.8"
],
"kegg.reaction":[
"R00332"
],
"metanetx.reaction":[
"MNXR100144"
],
"rhea":[
"20783",
"20782",
"20780",
"20781"
],
"sabiork":[
"77"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00239"
]
}
},
{
"id":"GUI1",
"name":"Glucuronate isomerase (D-glucuronate)",
"metabolites":{
"fruur_c":1.0,
"glcur_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0451",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GUI1"
]
},
"annotation":{
"bigg.reaction":[
"GUI1"
],
"ec-code":[
"5.3.1.12"
],
"kegg.reaction":[
"R01482"
],
"metanetx.reaction":[
"MNXR100468"
],
"rhea":[
"13051",
"13050",
"13049",
"13052"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01080"
]
}
},
{
"id":"GUI2",
"name":"Glucuronate isomerase (D-galacturonate)",
"metabolites":{
"galur_c":-1.0,
"tagur_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0451",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GUI2"
]
},
"annotation":{
"bigg.reaction":[
"GUI2"
],
"ec-code":[
"5.3.1.12"
],
"kegg.reaction":[
"R01983"
],
"metanetx.reaction":[
"MNXR100469"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01457"
]
}
},
{
"id":"H2Otex",
"name":"H2O transport via diffusion (extracellular to periplasm)",
"metabolites":{
"h2o_e":-1.0,
"h2o_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"H2Otex"
]
},
"annotation":{
"bigg.reaction":[
"H2Otex"
],
"biocyc":[
"META:TRANS-RXN-145",
"META:TRANS-RXN0-547"
],
"metanetx.reaction":[
"MNXR98641"
],
"reactome.reaction":[
"R-ATH-507868",
"R-CFA-432054",
"R-CFA-432010",
"R-RNO-507868",
"R-OSA-432065",
"R-GGA-432010",
"R-SPO-445714",
"R-PFA-445714",
"R-CFA-432065",
"R-GGA-432067",
"R-TGU-432054",
"R-TGU-445714",
"R-OSA-507868",
"R-DRE-507868",
"R-SPO-507868",
"R-BTA-432054",
"R-GGA-507870",
"R-OSA-432010",
"R-DME-432065",
"R-DRE-432067",
"R-PFA-507868",
"R-SSC-432054",
"R-HSA-432065",
"R-OSA-507870",
"R-HSA-432054",
"R-SSC-432065",
"R-CEL-507868",
"R-XTR-507868",
"R-ATH-507870",
"R-SCE-432065",
"R-BTA-507870",
"R-DME-432010",
"R-CFA-445714",
"R-DRE-445714",
"R-BTA-507868",
"R-GGA-507868",
"R-RNO-432054",
"R-RNO-432010",
"R-SSC-432067",
"R-CEL-445714",
"R-DDI-432065",
"R-ATH-432010",
"R-SCE-432054",
"R-MMU-432065",
"R-MMU-445714",
"R-GGA-432065",
"R-HSA-432067",
"R-SSC-507870",
"R-SCE-432067",
"R-RNO-507870",
"R-DME-432054",
"R-ATH-432067",
"R-BTA-445714",
"R-DRE-507870",
"R-DME-507868",
"R-DME-507870",
"R-DRE-432010",
"R-MMU-432010",
"R-HSA-445714",
"R-OSA-432054",
"R-RNO-432067",
"R-TGU-432010",
"R-TGU-507868",
"R-DDI-432054",
"R-PFA-507870",
"R-HSA-507870",
"R-XTR-432067",
"R-HSA-432010",
"R-SSC-507868",
"R-SCE-507870",
"R-CEL-507870",
"R-DDI-507868",
"R-DRE-432054",
"R-XTR-507870",
"R-DDI-432010",
"R-BTA-432065",
"R-CFA-432067",
"R-OSA-432067",
"R-ATH-432065",
"R-GGA-445714",
"R-SCE-507868",
"R-TGU-432065",
"R-MMU-432067",
"R-TGU-507870",
"R-CFA-507870",
"R-RNO-432065",
"R-MMU-432054",
"R-MMU-507868",
"R-SPO-507870",
"R-SCE-432010",
"R-MMU-507870",
"R-SSC-445714",
"R-HSA-507868",
"R-DME-432067",
"R-SSC-432010",
"R-TGU-432067",
"R-GGA-432054",
"R-BTA-432010",
"R-SCE-445714",
"R-DDI-507870",
"R-ATH-432054",
"R-DDI-432067",
"R-XTR-445714",
"R-BTA-432067",
"R-CFA-507868",
"R-RNO-445714"
],
"rhea":[
"29668",
"29669",
"29667",
"29670"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08687",
"rxn08686",
"rxn09745",
"rxn09838",
"rxn09874",
"rxn09812",
"rxn09643",
"rxn05319"
]
}
},
{
"id":"HEPT2",
"name":"Heptosyltransferase II (LPS core synthesis)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"h_c":1.0,
"hhlipa_c":1.0,
"hlipa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2345",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"HEPT2"
]
},
"annotation":{
"bigg.reaction":[
"HEPT2"
],
"biocyc":[
"META:RXN0-5061"
],
"ec-code":[
"2"
],
"metanetx.reaction":[
"MNXR100604"
],
"rhea":[
"28539",
"28540",
"28541",
"28538"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08711"
]
}
},
{
"id":"H2Otpp",
"name":"H2O transport via diffusion (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h2o_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"H2Otpp"
]
},
"annotation":{
"bigg.reaction":[
"H2Otpp"
],
"biocyc":[
"META:TRANS-RXN-145",
"META:TRANS-RXN0-547"
],
"metanetx.reaction":[
"MNXR98641"
],
"reactome.reaction":[
"R-ATH-507868",
"R-CFA-432054",
"R-CFA-432010",
"R-RNO-507868",
"R-OSA-432065",
"R-GGA-432010",
"R-SPO-445714",
"R-PFA-445714",
"R-CFA-432065",
"R-GGA-432067",
"R-TGU-432054",
"R-TGU-445714",
"R-OSA-507868",
"R-DRE-507868",
"R-SPO-507868",
"R-BTA-432054",
"R-GGA-507870",
"R-OSA-432010",
"R-DME-432065",
"R-DRE-432067",
"R-PFA-507868",
"R-SSC-432054",
"R-HSA-432065",
"R-OSA-507870",
"R-HSA-432054",
"R-SSC-432065",
"R-CEL-507868",
"R-XTR-507868",
"R-ATH-507870",
"R-SCE-432065",
"R-BTA-507870",
"R-DME-432010",
"R-CFA-445714",
"R-DRE-445714",
"R-BTA-507868",
"R-GGA-507868",
"R-RNO-432054",
"R-RNO-432010",
"R-SSC-432067",
"R-CEL-445714",
"R-DDI-432065",
"R-ATH-432010",
"R-SCE-432054",
"R-MMU-432065",
"R-MMU-445714",
"R-GGA-432065",
"R-HSA-432067",
"R-SSC-507870",
"R-SCE-432067",
"R-RNO-507870",
"R-DME-432054",
"R-ATH-432067",
"R-BTA-445714",
"R-DRE-507870",
"R-DME-507868",
"R-DME-507870",
"R-DRE-432010",
"R-MMU-432010",
"R-HSA-445714",
"R-OSA-432054",
"R-RNO-432067",
"R-TGU-432010",
"R-TGU-507868",
"R-DDI-432054",
"R-PFA-507870",
"R-HSA-507870",
"R-XTR-432067",
"R-HSA-432010",
"R-SSC-507868",
"R-SCE-507870",
"R-CEL-507870",
"R-DDI-507868",
"R-DRE-432054",
"R-XTR-507870",
"R-DDI-432010",
"R-BTA-432065",
"R-CFA-432067",
"R-OSA-432067",
"R-ATH-432065",
"R-GGA-445714",
"R-SCE-507868",
"R-TGU-432065",
"R-MMU-432067",
"R-TGU-507870",
"R-CFA-507870",
"R-RNO-432065",
"R-MMU-432054",
"R-MMU-507868",
"R-SPO-507870",
"R-SCE-432010",
"R-MMU-507870",
"R-SSC-445714",
"R-HSA-507868",
"R-DME-432067",
"R-SSC-432010",
"R-TGU-432067",
"R-GGA-432054",
"R-BTA-432010",
"R-SCE-445714",
"R-DDI-507870",
"R-ATH-432054",
"R-DDI-432067",
"R-XTR-445714",
"R-BTA-432067",
"R-CFA-507868",
"R-RNO-445714"
],
"rhea":[
"29668",
"29669",
"29667",
"29670"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08687",
"rxn08686",
"rxn09745",
"rxn09838",
"rxn09874",
"rxn09812",
"rxn09643",
"rxn05319"
]
}
},
{
"id":"HEPT2N",
"name":"Heptosyltransferase II (LPS core synthesis) (glucosediaminyl)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"h_c":1.0,
"hhlipan_c":1.0,
"hlipan_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2345",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"HEPT2N"
]
},
"annotation":{
"bigg.reaction":[
"HEPT2N"
],
"metanetx.reaction":[
"MNXR100605"
],
"sbo":"SBO:0000176"
}
},
{
"id":"H2tex",
"name":"Hydrogen transport via diffusion (extracellular to periplasm)",
"metabolites":{
"h2_e":-1.0,
"h2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"H2tex"
]
},
"annotation":{
"bigg.reaction":[
"H2tex"
],
"metanetx.reaction":[
"MNXR100495"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10542",
"rxn08691",
"rxn08692"
]
}
},
{
"id":"HEPT5",
"name":"Heptosyltransferase (LPS core synthesis) (heptosyl-(1->3Hep2)-glucosyl-(1->4Hep1)-heptosyl-(1->3)-heptosyl-(1->5)-kdo2-lipidA)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"ghhlipa_c":-1.0,
"h_c":1.0,
"hghhlipa_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2341",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"HEPT5"
]
},
"annotation":{
"bigg.reaction":[
"HEPT5"
],
"metanetx.reaction":[
"MNXR100608"
],
"sbo":"SBO:0000176"
}
},
{
"id":"H2tpp",
"name":"Hydrogen transport diffusion (periplasm)",
"metabolites":{
"h2_c":1.0,
"h2_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"H2tpp"
]
},
"annotation":{
"bigg.reaction":[
"H2tpp"
],
"metanetx.reaction":[
"MNXR100495"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10542",
"rxn08691",
"rxn08692"
]
}
},
{
"id":"HACD1",
"name":"3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA)",
"metabolites":{
"3hbcoa_c":1.0,
"aacoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2072 or Gmet_2269",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD1"
]
},
"annotation":{
"bigg.reaction":[
"HACD1"
],
"biocyc":[
"META:RXN-11662"
],
"ec-code":[
"1.1.1.35"
],
"kegg.reaction":[
"R01975"
],
"metanetx.reaction":[
"MNXR100541"
],
"reactome.reaction":[
"R-HSA-77312",
"R-MMU-77312",
"R-OSA-77312",
"R-XTR-77312",
"R-ATH-77312",
"R-CFA-77312",
"R-RNO-77312",
"R-BTA-77312",
"R-SSC-77312",
"R-DRE-77312",
"R-DDI-77312",
"R-TGU-77312",
"R-CEL-77312",
"R-GGA-77312"
],
"rhea":[
"30801",
"30802",
"30799",
"30800"
],
"sabiork":[
"2018"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01451"
]
}
},
{
"id":"HACD2",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)",
"metabolites":{
"3hhcoa_c":1.0,
"3ohcoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2072 or Gmet_2269",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD2"
]
},
"annotation":{
"bigg.reaction":[
"HACD2"
],
"biocyc":[
"META:RXN-12570"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04748"
],
"metanetx.reaction":[
"MNXR100543"
],
"reactome.reaction":[
"R-DDI-77323",
"R-ATH-77323",
"R-RNO-77323",
"R-DRE-77323",
"R-SSC-77323",
"R-BTA-77323",
"R-HSA-77323",
"R-MMU-77323",
"R-OSA-77323",
"R-TGU-77323",
"R-CEL-77323",
"R-GGA-77323",
"R-XTR-77323",
"R-CFA-77323"
],
"rhea":[
"31145",
"31144",
"31143",
"31146"
],
"sabiork":[
"4404"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03249"
]
}
},
{
"id":"HACD3",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)",
"metabolites":{
"3hocoa_c":1.0,
"3oocoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2072 or Gmet_2269",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD3"
]
},
"annotation":{
"bigg.reaction":[
"HACD3"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04745"
],
"metanetx.reaction":[
"MNXR100544"
],
"reactome.reaction":[
"R-BTA-77331",
"R-DDI-77331",
"R-CFA-77331",
"R-GGA-77331",
"R-HSA-77331",
"R-RNO-77331",
"R-MMU-77331",
"R-TGU-77331",
"R-CEL-77331",
"R-SSC-77331",
"R-OSA-77331",
"R-XTR-77331",
"R-ATH-77331",
"R-DRE-77331"
],
"rhea":[
"31196",
"31198",
"31197",
"31195"
],
"sabiork":[
"4401"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03246"
]
}
},
{
"id":"HACD4",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)",
"metabolites":{
"3hdcoa_c":1.0,
"3odcoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2072 or Gmet_2269",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD4"
]
},
"annotation":{
"bigg.reaction":[
"HACD4"
],
"biocyc":[
"META:RXN-12490"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04743"
],
"metanetx.reaction":[
"MNXR100545"
],
"reactome.reaction":[
"R-BTA-77342",
"R-OSA-77342",
"R-ATH-77342",
"R-MMU-77342",
"R-CEL-77342",
"R-XTR-77342",
"R-SSC-77342",
"R-TGU-77342",
"R-CFA-77342",
"R-DRE-77342",
"R-GGA-77342",
"R-RNO-77342",
"R-HSA-77342",
"R-DDI-77342"
],
"rhea":[
"31190",
"31187",
"31189",
"31188"
],
"sabiork":[
"4399"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03244"
]
}
},
{
"id":"HACD5",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)",
"metabolites":{
"3hddcoa_c":1.0,
"3oddcoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2072 or Gmet_2269",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD5"
]
},
"annotation":{
"bigg.reaction":[
"HACD5"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04741"
],
"metanetx.reaction":[
"MNXR100546"
],
"reactome.reaction":[
"R-GGA-77254",
"R-TGU-77254",
"R-SSC-77254",
"R-HSA-77254",
"R-MMU-77254",
"R-RNO-77254",
"R-CFA-77254",
"R-OSA-77254",
"R-DDI-77254",
"R-DRE-77254",
"R-XTR-77254",
"R-ATH-77254",
"R-CEL-77254",
"R-BTA-77254"
],
"rhea":[
"31182",
"31181",
"31179",
"31180"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03242"
]
}
},
{
"id":"GLA",
"name":"UDP-galacturonate 4-epimerase",
"metabolites":{
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0,
"udpgalur_c":-1.0,
"udpglcur_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2330",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"GLA"
]
},
"annotation":{
"bigg.reaction":[
"GLA"
],
"metanetx.reaction":[
"MNXR100147"
],
"sbo":"SBO:0000176"
}
},
{
"id":"IOR2b",
"name":"Indolepyruvate ferredoxin oxidoreductase (phenylpyvurate)",
"metabolites":{
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0,
"phaccoa_c":1.0,
"phpyr_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1826 and Gmet_1827) or (Gmet_0948 and Gmet_0949) or (Gmet_1307 and Gmet_1308 and Gmet_1309 and Gmet_1306)",
"subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"IOR2b"
]
},
"annotation":{
"bigg.reaction":[
"IOR2b"
],
"metanetx.reaction":[
"MNXR143169"
],
"sbo":"SBO:0000176"
}
},
{
"id":"IOR3b",
"name":"Indolepyruvate ferredoxin oxidoreductase (hydroxyphenylpyvurate)",
"metabolites":{
"34hpp_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0,
"hphaccoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1826 and Gmet_1827) or (Gmet_0948 and Gmet_0949) or (Gmet_1307 and Gmet_1308 and Gmet_1309 and Gmet_1306)",
"subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"IOR3b"
]
},
"annotation":{
"bigg.reaction":[
"IOR3b"
],
"metanetx.reaction":[
"MNXR100857"
],
"sbo":"SBO:0000176"
}
},
{
"id":"IORb",
"name":"Indolepyruvate ferredoxin oxidoreductase",
"metabolites":{
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0,
"indaccoa_c":1.0,
"indpyr_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1826 and Gmet_1827) or (Gmet_0948 and Gmet_0949) or (Gmet_1307 and Gmet_1308 and Gmet_1309 and Gmet_1306)",
"subsystem":"Tyrosine, Tryptophan, and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"IORb"
]
},
"annotation":{
"bigg.reaction":[
"IORb"
],
"metanetx.reaction":[
"MNXR100858"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HACD6",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA)",
"metabolites":{
"3htdcoa_c":1.0,
"3otdcoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2072 or Gmet_2269",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD6"
]
},
"annotation":{
"bigg.reaction":[
"HACD6"
],
"biocyc":[
"META:RXN-12507"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04739"
],
"metanetx.reaction":[
"MNXR100547"
],
"reactome.reaction":[
"R-DME-77283",
"R-BTA-77283",
"R-SSC-77283",
"R-TGU-77283",
"R-HSA-77283",
"R-GGA-77283",
"R-CEL-77283",
"R-CFA-77283",
"R-RNO-77283",
"R-MMU-77283",
"R-XTR-77283"
],
"rhea":[
"31169",
"31167",
"31170",
"31168"
],
"sabiork":[
"4395"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06777"
]
}
},
{
"id":"HEPT5N",
"name":"Heptosyltransferase (LPS core synthesis) (glucosediamine) (heptosyl-(1->3Hep2)-glucosyl-(1->4Hep1)-heptosyl-(1->3)-heptosyl-(1->5)-kdo2-lipidA)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"ghhlipan_c":-1.0,
"h_c":1.0,
"hghhlipan_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2341",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"HEPT5N"
]
},
"annotation":{
"bigg.reaction":[
"HEPT5N"
],
"metanetx.reaction":[
"MNXR100609"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HACD7",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxohexadecanoyl-CoA)",
"metabolites":{
"3hhdcoa_c":1.0,
"3ohdcoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2072 or Gmet_2269",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD7"
]
},
"annotation":{
"bigg.reaction":[
"HACD7"
],
"biocyc":[
"META:RXN-14271"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04737"
],
"metanetx.reaction":[
"MNXR100548"
],
"reactome.reaction":[
"R-TGU-77303",
"R-CEL-77303",
"R-BTA-77303",
"R-MMU-77303",
"R-RNO-77303",
"R-SSC-77303",
"R-CFA-77303",
"R-HSA-77303",
"R-XTR-77303",
"R-GGA-77303",
"R-DME-77303"
],
"rhea":[
"31161",
"31160",
"31162",
"31159"
],
"sabiork":[
"4393"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03239"
]
}
},
{
"id":"HACD8",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxooctadecanoyl-CoA), peroxisomal",
"metabolites":{
"3hodcoa_c":1.0,
"3ohodcoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2072 or Gmet_2269",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD8"
]
},
"annotation":{
"bigg.reaction":[
"HACD8"
],
"ec-code":[
"1.1.1.35"
],
"metanetx.reaction":[
"MNXR100549"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08700"
]
}
},
{
"id":"HCITS",
"name":"Homocitrate synthase",
"metabolites":{
"accoa_c":-1.0,
"akg_c":-1.0,
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hcit_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0692",
"objective_coefficient":-0.0500765884191873,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"HCITS"
]
},
"annotation":{
"bigg.reaction":[
"HCITS"
],
"metanetx.reaction":[
"MNXR100572"
],
"sbo":"SBO:0000176"
}
},
{
"id":"IPDPS",
"name":"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)",
"metabolites":{
"h2mb4p_c":-1.0,
"h2o_c":1.0,
"h_c":-1.0,
"ipdp_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0866",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"IPDPS"
]
},
"annotation":{
"bigg.reaction":[
"IPDPS"
],
"ec-code":[
"1.17.1.2"
],
"metanetx.reaction":[
"MNXR100874"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08756"
]
}
},
{
"id":"HCO3E",
"name":"HCO3 equilibration reaction",
"metabolites":{
"co2_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hco3_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3517 or Gmet_0774 or Gmet_1242",
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"HCO3E"
]
},
"annotation":{
"bigg.reaction":[
"HCO3E"
],
"biocyc":[
"META:RXN0-5224",
"META:CARBODEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.1"
],
"kegg.reaction":[
"R10092",
"R00132"
],
"metanetx.reaction":[
"MNXR100482"
],
"reactome.reaction":[
"R-GGA-1237059",
"R-MMU-1237059",
"R-OSA-1237047",
"R-BTA-1237081",
"R-ATH-1475026",
"R-OSA-1475435",
"R-HSA-1237059",
"R-SSC-1475026",
"R-XTR-1475435",
"R-DME-1475435",
"R-DRE-1475436",
"R-DME-1237081",
"R-DME-1475017",
"R-DME-1475025",
"R-BTA-1475435",
"R-RNO-1475435",
"R-RNO-1237045",
"R-DRE-1237047",
"R-SSC-1237059",
"R-RNO-1475436",
"R-DRE-1475028",
"R-ATH-1475032",
"R-GGA-1237047",
"R-DRE-1475017",
"R-RNO-1237059",
"R-DME-1475032",
"R-MMU-1475025",
"R-XTR-1237081",
"R-DME-1475436",
"R-RNO-1475025",
"R-TGU-1475017",
"R-DME-1475028",
"R-GGA-1475032",
"R-RNO-1475028",
"R-OSA-1475028",
"R-DRE-1475435",
"R-GGA-1475022",
"R-MMU-1475435",
"R-TGU-1237081",
"R-HSA-1475028",
"R-GGA-1475028",
"R-MMU-1475032",
"R-OSA-1237081",
"R-SSC-1475436",
"R-ATH-1475435",
"R-ATH-1475436",
"R-ATH-1475017",
"R-DME-1237045",
"R-DRE-1475025",
"R-SSC-1475017",
"R-TGU-1475032",
"R-XTR-1475032",
"R-RNO-1475032",
"R-DME-1475026",
"R-GGA-1475025",
"R-HSA-1237047",
"R-TGU-1475026",
"R-ATH-1475028",
"R-XTR-1475028",
"R-RNO-1475022",
"R-GGA-1475436",
"R-CFA-1237047",
"R-DRE-1475026",
"R-CFA-1237081",
"R-CFA-1237045",
"R-OSA-1475032",
"R-DME-1475022",
"R-HSA-1475435",
"R-OSA-1237045",
"R-BTA-1237045",
"R-CEL-1237047",
"R-XTR-1475436",
"R-BTA-1237047",
"R-CEL-1475017",
"R-CFA-1475435",
"R-CEL-1237059",
"R-OSA-1475022",
"R-BTA-1237059",
"R-OSA-1475436",
"R-XTR-1475025",
"R-XTR-1475017",
"R-TGU-1475028",
"R-MMU-1237047",
"R-SSC-1475025",
"R-TGU-1475025",
"R-CFA-1475436",
"R-CEL-1237045",
"R-GGA-1475435",
"R-ATH-1475025",
"R-CEL-1237081",
"R-XTR-1475022",
"R-ATH-1237059",
"R-DRE-1475032",
"R-RNO-1475017",
"R-MMU-1475028",
"R-RNO-1475026",
"R-OSA-1475017",
"R-CFA-1475025",
"R-ATH-1475022",
"R-CFA-1475022",
"R-BTA-1475032",
"R-BTA-1475026",
"R-TGU-1237047",
"R-HSA-1237081",
"R-HSA-1475032",
"R-OSA-1475026",
"R-BTA-1475028",
"R-SSC-1237045",
"R-BTA-1475017",
"R-TGU-1237059",
"R-GGA-1475017",
"R-CFA-1475032",
"R-GGA-1475026",
"R-TGU-1475022",
"R-HSA-1475022",
"R-HSA-1237045",
"R-RNO-1237081",
"R-MMU-1475436",
"R-DRE-1237045",
"R-BTA-1475025",
"R-BTA-1475022",
"R-DME-1237059",
"R-XTR-1237047",
"R-CFA-1475026",
"R-SSC-1237047",
"R-SSC-1475028",
"R-XTR-1237059",
"R-TGU-1475435",
"R-ATH-1237047",
"R-CFA-1475028",
"R-MMU-1475022",
"R-CEL-1475025",
"R-DRE-1237059",
"R-HSA-1475025",
"R-OSA-1237059",
"R-DRE-1475022",
"R-OSA-1475025",
"R-DRE-1237081",
"R-MMU-1237045",
"R-XTR-1475026",
"R-CFA-1475017",
"R-HSA-1475436",
"R-HSA-1475026",
"R-MMU-1475017",
"R-MMU-1475026",
"R-RNO-1237047",
"R-BTA-1475436",
"R-TGU-1237045",
"R-SSC-1475022",
"R-ATH-1237045",
"R-SSC-1475032",
"R-MMU-1237081",
"R-DME-1237047",
"R-XTR-1237045",
"R-CFA-1237059",
"R-TGU-1475436",
"R-SSC-1237081",
"R-ATH-1237081",
"R-HSA-1475017",
"R-SSC-1475435"
],
"rhea":[
"10749",
"10748",
"10750",
"10751"
],
"sabiork":[
"703"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00102"
]
}
},
{
"id":"HEX1",
"name":"Hexokinase (D-glucose:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"g6p_c":1.0,
"glc__D_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1639",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"HEX1"
]
},
"annotation":{
"bigg.reaction":[
"HEX1"
],
"biocyc":[
"META:GLUCOKIN-RXN"
],
"ec-code":[
"2.7.1.1",
"2.7.1.2"
],
"kegg.reaction":[
"R00299"
],
"metanetx.reaction":[
"MNXR100612"
],
"rhea":[
"17827",
"17828",
"17826",
"17825"
],
"sabiork":[
"9175",
"793",
"6915"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00216"
]
}
},
{
"id":"HDCAtexi",
"name":"Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"hdca_e":-1.0,
"hdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1535",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"HDCAtexi"
]
},
"annotation":{
"bigg.reaction":[
"HDCAtexi"
],
"metanetx.reaction":[
"MNXR99101"
],
"rhea":[
"45257",
"45256",
"45258",
"45259"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08704",
"rxn09848",
"rxn09676"
]
}
},
{
"id":"IPMD",
"name":"3-isopropylmalate dehydrogenase",
"metabolites":{
"3c2hmp_c":-1.0,
"3c4mop_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0602",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"IPMD"
]
},
"annotation":{
"bigg.reaction":[
"IPMD"
],
"biocyc":[
"META:3-ISOPROPYLMALDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.85"
],
"kegg.reaction":[
"R04426"
],
"metanetx.reaction":[
"MNXR100878"
],
"rhea":[
"10894",
"10893",
"10895",
"10892"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03062"
]
}
},
{
"id":"IPPMIa",
"name":"3-isopropylmalate dehydratase",
"metabolites":{
"2ippm_c":1.0,
"3c2hmp_c":-1.0,
"h2o_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1268 and Gmet_1269",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"IPPMIa"
]
},
"annotation":{
"bigg.reaction":[
"IPPMIa"
],
"biocyc":[
"META:RXN-8991"
],
"ec-code":[
"4.2.1.33"
],
"kegg.reaction":[
"R04001"
],
"metanetx.reaction":[
"MNXR100827"
],
"rhea":[
"10679",
"10677",
"10678",
"10676"
],
"sabiork":[
"3736"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02811"
]
}
},
{
"id":"IPPMIb",
"name":"2-isopropylmalate hydratase",
"metabolites":{
"2ippm_c":-1.0,
"3c3hmp_c":1.0,
"h2o_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1268 and Gmet_1269",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"IPPMIb"
]
},
"annotation":{
"bigg.reaction":[
"IPPMIb"
],
"biocyc":[
"META:3-ISOPROPYLMALISOM-RXN"
],
"ec-code":[
"4.2.1.33"
],
"kegg.reaction":[
"R03968"
],
"metanetx.reaction":[
"MNXR100826"
],
"rhea":[
"16293",
"16295",
"16296",
"16294"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02789"
]
}
},
{
"id":"IPPS",
"name":"2-isopropylmalate synthase",
"metabolites":{
"3c3hmp_c":1.0,
"3mob_c":-1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1265",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"IPPS"
]
},
"annotation":{
"bigg.reaction":[
"IPPS"
],
"biocyc":[
"META:2-ISOPROPYLMALATESYN-RXN"
],
"ec-code":[
"2.3.3.13"
],
"kegg.reaction":[
"R01213"
],
"metanetx.reaction":[
"MNXR100879"
],
"rhea":[
"21527",
"21525",
"21524",
"21526"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00902"
]
}
},
{
"id":"HDCEAtexi",
"name":"Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"hdcea_e":-1.0,
"hdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1535",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"HDCEAtexi"
]
},
"annotation":{
"bigg.reaction":[
"HDCEAtexi"
],
"metanetx.reaction":[
"MNXR99102"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MOATN",
"name":"3-deoxy-D-manno-octulosonic acid transferase (glucosediaminyl)",
"metabolites":{
"ckdo_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"kdolipid4n_c":1.0,
"lipidAn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2348",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"MOATN"
]
},
"annotation":{
"bigg.reaction":[
"MOATN"
],
"metanetx.reaction":[
"MNXR101687"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ISETACabcpp",
"name":"Isethionate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"isetac_c":1.0,
"isetac_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0996 and Gmet_0997 and Gmet_0998) or (Gmet_1901 and Gmet_1899 and Gmet_1900)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ISETACabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ISETACabcpp"
],
"metanetx.reaction":[
"MNXR100880"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08758",
"rxn05594"
]
}
},
{
"id":"HEX4",
"name":"Hexokinase (D-mannose:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"man6p_c":1.0,
"man_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2805",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"HEX4"
]
},
"annotation":{
"bigg.reaction":[
"HEX4"
],
"biocyc":[
"META:MANNKIN-RXN"
],
"ec-code":[
"2.7.1.1",
"2.7.1.7"
],
"kegg.reaction":[
"R01326"
],
"metanetx.reaction":[
"MNXR95795"
],
"rhea":[
"11028",
"11030",
"11029",
"11031"
],
"sabiork":[
"575"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00975"
]
}
},
{
"id":"ISETACtex",
"name":"Isethionate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"isetac_e":-1.0,
"isetac_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"ISETACtex"
]
},
"annotation":{
"bigg.reaction":[
"ISETACtex"
],
"metanetx.reaction":[
"MNXR100881"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08759"
]
}
},
{
"id":"K2L4A3ODAex",
"name":"KDO(2)-Lipid IV(A) 3-O-deacetylase (n-C14:0) (extracellular membrane)",
"metabolites":{
"3httdca_e":1.0,
"h2o_e":-1.0,
"h_e":1.0,
"kdo2lipid4_e":-1.0,
"kdo2lipid4b_e":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1704",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"K2L4A3ODAex"
]
},
"annotation":{
"bigg.reaction":[
"K2L4A3ODAex"
],
"metanetx.reaction":[
"MNXR100898"
],
"sbo":"SBO:0000176"
}
},
{
"id":"K2L4Aabcpp",
"name":"KDO(2)-lipid IV A transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"kdo2lipid4_c":-1.0,
"kdo2lipid4_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"K2L4Aabcpp"
]
},
"annotation":{
"bigg.reaction":[
"K2L4Aabcpp"
],
"metanetx.reaction":[
"MNXR100899"
],
"rhea":[
"35248#1",
"35249#1",
"35247#1",
"35250#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08760"
]
}
},
{
"id":"MAN6PI",
"name":"Mannose-6-phosphate isomerase",
"metabolites":{
"f6p_c":1.0,
"man6p_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2471 or Gmet_3178",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"MAN6PI"
]
},
"annotation":{
"bigg.reaction":[
"MAN6PI"
],
"biocyc":[
"META:MANNPISOM-RXN"
],
"ec-code":[
"5.3.1.8"
],
"kegg.reaction":[
"R01819"
],
"metanetx.reaction":[
"MNXR101382"
],
"sbo":"SBO:0000176"
}
},
{
"id":"K2L4Aabctex",
"name":"KDO(2)-lipid IV A transport via ABC system (periplasm to extracellular)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"kdo2lipid4_e":1.0,
"kdo2lipid4_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1281 and Gmet_1282 and Gmet_1280 and Gmet_2474 and Gmet_2299 and Gmet_1249 and Gmet_1248",
"objective_coefficient":-1.05687957663654,
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"K2L4Aabctex"
]
},
"annotation":{
"bigg.reaction":[
"K2L4Aabctex"
],
"metanetx.reaction":[
"MNXR100900"
],
"sbo":"SBO:0000185"
}
},
{
"id":"HEX7",
"name":"Hexokinase (D-fructose:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"f6p_c":1.0,
"fru_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2805",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"HEX7"
]
},
"annotation":{
"bigg.reaction":[
"HEX7"
],
"ec-code":[
"2.7.1.1",
"2.7.1.4"
],
"kegg.reaction":[
"R00867"
],
"metanetx.reaction":[
"MNXR100614"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KARA1",
"name":"Ketol-acid reductoisomerase (2,3-dihydroxy-3-methylbutanoate)",
"metabolites":{
"23dhmb_c":-1.0,
"alac__S_c":1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1262",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"KARA1"
]
},
"annotation":{
"bigg.reaction":[
"KARA1"
],
"biocyc":[
"META:ACETOLACTREDUCTOISOM-RXN"
],
"ec-code":[
"1.1.1.86",
"1.1.1.383"
],
"kegg.reaction":[
"R04439"
],
"metanetx.reaction":[
"MNXR97523"
],
"rhea":[
"22070",
"22068",
"22069",
"22071"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KARA2",
"name":"Ketol-acid reductoisomerase (2-Acetolactate)",
"metabolites":{
"23dhmp_c":1.0,
"2ahbut_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1262",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"KARA2"
]
},
"annotation":{
"bigg.reaction":[
"KARA2"
],
"biocyc":[
"META:ACETOOHBUTREDUCTOISOM-RXN"
],
"ec-code":[
"1.1.1.86"
],
"metanetx.reaction":[
"MNXR100902"
],
"rhea":[
"13496",
"13494",
"13495",
"13493"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KAS14",
"name":"Beta-ketoacyl-ACP synthase",
"metabolites":{
"ACP_c":1.0,
"acACP_c":-1.0,
"actACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"objective_coefficient":-8.23993651088983e-18,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"KAS14"
]
},
"annotation":{
"bigg.reaction":[
"KAS14"
],
"biocyc":[
"META:3-OXOACYL-ACP-SYNTH-BASE-RXN"
],
"ec-code":[
"2.3.1.180",
"2.3.1.85",
"2.3.1.86",
"2.3.1.179",
"2.3.1.-",
"2.3.1.41"
],
"kegg.reaction":[
"R04355"
],
"metanetx.reaction":[
"MNXR100912"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05347"
]
}
},
{
"id":"KAS15",
"name":"Beta-ketoacyl-ACP synthase (2)",
"metabolites":{
"accoa_c":-1.0,
"actACP_c":1.0,
"co2_c":1.0,
"coa_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"KAS15"
]
},
"annotation":{
"bigg.reaction":[
"KAS15"
],
"biocyc":[
"META:2.3.1.180-RXN"
],
"ec-code":[
"2.3.1.180"
],
"kegg.reaction":[
"R10707"
],
"metanetx.reaction":[
"MNXR100913"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08766"
]
}
},
{
"id":"MBCOAi",
"name":"3-Methylbutanoyl-CoA:(acceptor) 2,3-oxidoreductase",
"metabolites":{
"3mb2coa_c":1.0,
"fad_c":-1.0,
"fadh2_c":1.0,
"ivcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3289",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MBCOA"
]
},
"annotation":{
"bigg.reaction":[
"MBCOAi"
],
"biocyc":[
"META:RXN-14264"
],
"ec-code":[
"1.3.99.10",
"1.3.8.7",
"1.3.8.4"
],
"kegg.reaction":[
"R04095"
],
"metanetx.reaction":[
"MNXR95318"
],
"reactome.reaction":[
"R-BTA-70745",
"R-OSA-70745",
"R-HSA-70745",
"R-DDI-70745",
"R-DRE-70745",
"R-XTR-70745",
"R-ATH-70745",
"R-GGA-70745",
"R-RNO-70745",
"R-MMU-70745",
"R-SSC-70745",
"R-CFA-70745",
"R-TGU-70745",
"R-CEL-70745",
"R-DME-70745"
],
"rhea":[
"12277",
"31063",
"12276",
"12278",
"31065",
"12279",
"31066",
"31064"
],
"sabiork":[
"3822"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02866"
]
}
},
{
"id":"MCCC",
"name":"Methylcrotonoyl-CoA carboxylase",
"metabolites":{
"3mb2coa_c":-1.0,
"3mgcoa_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"hco3_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3292 and Gmet_3290",
"objective_coefficient":-0.0131780495839967,
"subsystem":"Valine, leucine and isoleucine degradation",
"notes":{
"original_bigg_ids":[
"MCCC"
]
},
"annotation":{
"bigg.reaction":[
"MCCC"
],
"biocyc":[
"META:METHYLCROTONYL-COA-CARBOXYLASE-RXN"
],
"ec-code":[
"6.4.1.4"
],
"kegg.reaction":[
"R04138"
],
"metanetx.reaction":[
"MNXR101411"
],
"reactome.reaction":[
"R-BTA-508308",
"R-DRE-70773",
"R-DDI-508308",
"R-HSA-70773",
"R-CFA-508308",
"R-SSC-70773",
"R-RNO-508308",
"R-HSA-508308",
"R-GGA-508308",
"R-DME-70773",
"R-OSA-70773",
"R-DRE-508308",
"R-CEL-508308",
"R-ATH-70773",
"R-GGA-70773",
"R-TGU-70773",
"R-BTA-70773",
"R-CFA-70773",
"R-CEL-70773",
"R-OSA-508308",
"R-SSC-508308",
"R-XTR-508308",
"R-ATH-508308",
"R-TGU-508308",
"R-RNO-70773",
"R-DDI-70773",
"R-XTR-70773",
"R-DME-508308",
"R-MMU-508308",
"R-MMU-70773"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02889"
]
}
},
{
"id":"MCITD",
"name":"2-methylcitrate dehydratase",
"metabolites":{
"2mcacn_c":1.0,
"2mcit_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1123",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MCITD"
]
},
"annotation":{
"bigg.reaction":[
"MCITD"
],
"biocyc":[
"META:2-METHYLCITRATE-DEHYDRATASE-RXN"
],
"ec-code":[
"4.2.1.79"
],
"kegg.reaction":[
"R04424"
],
"metanetx.reaction":[
"MNXR101413"
],
"rhea":[
"17725",
"17728",
"17726",
"17727"
],
"sabiork":[
"4111"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03060"
]
}
},
{
"id":"MCITL2",
"name":"Methylisocitrate lyase",
"metabolites":{
"micit_c":-1.0,
"pyr_c":1.0,
"succ_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1122",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MCITL2"
]
},
"annotation":{
"bigg.reaction":[
"MCITL2"
],
"biocyc":[
"META:METHYLISOCITRATE-LYASE-RXN"
],
"ec-code":[
"4.1.3.30"
],
"kegg.reaction":[
"R00409"
],
"metanetx.reaction":[
"MNXR101415"
],
"rhea":[
"16812",
"16811",
"16810",
"16809"
],
"sabiork":[
"866"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00289"
]
}
},
{
"id":"MCITS",
"name":"2-methylcitrate synthase",
"metabolites":{
"2mcit_c":1.0,
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"oaa_c":-1.0,
"ppcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1124",
"objective_coefficient":-0.00658902479199819,
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MCITS"
]
},
"annotation":{
"bigg.reaction":[
"MCITS"
],
"biocyc":[
"META:2-METHYLCITRATE-SYNTHASE-RXN"
],
"ec-code":[
"2.3.3.5"
],
"kegg.reaction":[
"R00931"
],
"metanetx.reaction":[
"MNXR101417"
],
"rhea":[
"23781",
"23780",
"23783",
"23782"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00679"
]
}
},
{
"id":"MCOATA",
"name":"Malonyl-CoA-ACP transacylase",
"metabolites":{
"ACP_c":-1.0,
"coa_c":1.0,
"malACP_c":1.0,
"malcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1600 or Gmet_1691",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"MCOATA"
]
},
"annotation":{
"bigg.reaction":[
"MCOATA"
],
"biocyc":[
"META:MALONYL-COA-ACP-TRANSACYL-RXN"
],
"ec-code":[
"2.3.1.85",
"2.3.1.86",
"2.3.1.0",
"2.3.1.39",
"2.3.1.-"
],
"kegg.reaction":[
"R01626"
],
"metanetx.reaction":[
"MNXR101421"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05465"
]
}
},
{
"id":"KDOCT2",
"name":"3-deoxy-manno-octulosonate cytidylyltransferase",
"metabolites":{
"ckdo_c":1.0,
"ctp_c":-1.0,
"kdo_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1275",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"KDOCT2"
]
},
"annotation":{
"bigg.reaction":[
"KDOCT2"
],
"biocyc":[
"META:CPM-KDOSYNTH-RXN"
],
"ec-code":[
"2.7.7.38"
],
"metanetx.reaction":[
"MNXR100932"
],
"rhea":[
"23449",
"23448",
"23451",
"23450"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KDOPP",
"name":"3-deoxy-manno-octulosonate-8-phosphatase",
"metabolites":{
"h2o_c":-1.0,
"kdo8p_c":-1.0,
"kdo_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1279",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"KDOPP"
]
},
"annotation":{
"bigg.reaction":[
"KDOPP"
],
"biocyc":[
"META:KDO-8PPHOSPHAT-RXN"
],
"ec-code":[
"3.1.3.45"
],
"metanetx.reaction":[
"MNXR141191"
],
"rhea":[
"11501",
"11503",
"11502",
"11500"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KDOPS",
"name":"3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase",
"metabolites":{
"ara5p_c":-1.0,
"h2o_c":-1.0,
"kdo8p_c":1.0,
"pep_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1277",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"KDOPS"
]
},
"annotation":{
"bigg.reaction":[
"KDOPS"
],
"ec-code":[
"2.5.1.55"
],
"kegg.reaction":[
"R03254"
],
"metanetx.reaction":[
"MNXR141202"
],
"rhea":[
"14054",
"14053",
"14055",
"14056"
],
"sabiork":[
"3075"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02331"
]
}
},
{
"id":"Kt2pp",
"name":"Potassium transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"k_c":1.0,
"k_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0039 or Gmet_0038",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"Kt2pp"
]
},
"annotation":{
"bigg.reaction":[
"Kt2pp"
],
"biocyc":[
"META:TRANS-RXN-3"
],
"metanetx.reaction":[
"MNXR100951"
],
"rhea":[
"28490",
"28493",
"28491",
"28492"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05595",
"rxn08769"
]
}
},
{
"id":"MCSNAH",
"name":"5-Methylcytosine aminohydrolase",
"metabolites":{
"5mcsn_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0,
"thym_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3524",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"MCSNAH"
]
},
"annotation":{
"bigg.reaction":[
"MCSNAH"
],
"biocyc":[
"META:RXN-14197"
],
"ec-code":[
"3.5.4.1"
],
"kegg.reaction":[
"R01411"
],
"metanetx.reaction":[
"MNXR101425"
],
"rhea":[
"30759",
"30762",
"30760",
"30761"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01025"
]
}
},
{
"id":"HGR",
"name":"Mercury(II) reductase",
"metabolites":{
"h_c":1.0,
"hg0_c":1.0,
"hg2_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0177",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"HGR"
]
},
"annotation":{
"bigg.reaction":[
"HGR"
],
"metanetx.reaction":[
"MNXR100630"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MCTP1App",
"name":"Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"murein5p5p_p":-1.0,
"murein5px4p_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0928 or Gmet_2778",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MCTP1App"
]
},
"annotation":{
"bigg.reaction":[
"MCTP1App"
],
"metanetx.reaction":[
"MNXR101426"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08887"
]
}
},
{
"id":"Kt3pp",
"name":"Potassium transport out via proton antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"k_c":-1.0,
"k_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1105",
"objective_coefficient":-0.00395341487519905,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"Kt3pp"
]
},
"annotation":{
"bigg.reaction":[
"Kt3pp"
],
"biocyc":[
"META:TRANS-RXN-42"
],
"metanetx.reaction":[
"MNXR100939"
],
"rhea":[
"29470",
"29467",
"29468",
"29469"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05596",
"rxn08770"
]
}
},
{
"id":"Ktex",
"name":"Potassium transport via diffusion (extracellular to periplasm)",
"metabolites":{
"k_e":-1.0,
"k_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"Ktex"
]
},
"annotation":{
"bigg.reaction":[
"Ktex"
],
"biocyc":[
"META:TRANS-RXN-190",
"META:TRANS-RXN-186",
"META:TRANS-RXN-185",
"META:TRANS-RXN-143",
"META:TRANS-RXN-187"
],
"metanetx.reaction":[
"MNXR100950"
],
"reactome.reaction":[
"R-CEL-1296046",
"R-CFA-1299297",
"R-DRE-1296127",
"R-CEL-1296035",
"R-GGA-1299318",
"R-XTR-1296046",
"R-RNO-5678261",
"R-ATH-1296043",
"R-MMU-877187",
"R-SSC-1296037",
"R-BTA-1299359",
"R-TGU-1296024",
"R-TGU-1296127",
"R-TGU-5678261",
"R-RNO-1296348",
"R-DME-5577234",
"R-RNO-1299297",
"R-HSA-5577050",
"R-DRE-1296037",
"R-DRE-1296024",
"R-XTR-5577050",
"R-MMU-1296348",
"R-RNO-5578910",
"R-DRE-5578910",
"R-RNO-1296024",
"R-CFA-1369017",
"R-TGU-1296348",
"R-RNO-2534365",
"R-GGA-1296045",
"R-CFA-5678261",
"R-XTR-1369017",
"R-DRE-1296043",
"R-GGA-1013020",
"R-HSA-5577234",
"R-CEL-1299338",
"R-CFA-1296043",
"R-BTA-1296127",
"R-HSA-5578910",
"R-BTA-1299338",
"R-BTA-1299318",
"R-RNO-5577237",
"R-HSA-1299359",
"R-CEL-1299318",
"R-HSA-1299318",
"R-DRE-1299304",
"R-MMU-1013020",
"R-XTR-1296039",
"R-TGU-1296045",
"R-BTA-1296045",
"R-XTR-1296037",
"R-SSC-5678261",
"R-MMU-1299297",
"R-DME-1296348",
"R-HSA-5683209",
"R-BTA-5578910",
"R-CFA-1296046",
"R-DME-1296035",
"R-CFA-1299359",
"R-HSA-1296043",
"R-DRE-1296039",
"R-GGA-1296348",
"R-XTR-1296043",
"R-SSC-2534365",
"R-XTR-5678261",
"R-CEL-1013020",
"R-GGA-1296127",
"R-MMU-1296039",
"R-HSA-1299304",
"R-BTA-1299304",
"R-DME-1296043",
"R-BTA-1296024",
"R-RNO-1296037",
"R-CFA-1296024",
"R-CFA-1013020",
"R-HSA-1296046",
"R-CFA-1296037",
"R-CEL-1299297",
"R-BTA-5577237",
"R-DME-1296039",
"R-TGU-1299359",
"R-CFA-1296127",
"R-HSA-1369017",
"R-RNO-1296046",
"R-XTR-1299338",
"R-DRE-5678261",
"R-XTR-5577234",
"R-HSA-1296024",
"R-RNO-1296045",
"R-GGA-5578910",
"R-DRE-1299338",
"R-GGA-1296046",
"R-RNO-1369017",
"R-CEL-1296045",
"R-DRE-5577050",
"R-DRE-1013020",
"R-BTA-1299297",
"R-SSC-1299338",
"R-SSC-1369017",
"R-GGA-5577050",
"R-CEL-1299359",
"R-BTA-5678261",
"R-BTA-1296043",
"R-RNO-1296127",
"R-OSA-1296043",
"R-CFA-5577050",
"R-CFA-5577234",
"R-SSC-1296045",
"R-MMU-1299304",
"R-MMU-1369017",
"R-SSC-1299304",
"R-MMU-1296035",
"R-HSA-1296035",
"R-TGU-1296037",
"R-GGA-1296039",
"R-SSC-5578910",
"R-GGA-1296024",
"R-CFA-1299304",
"R-GGA-5577234",
"R-RNO-1299338",
"R-DME-1296127",
"R-HSA-877187",
"R-DRE-1369017",
"R-HSA-1296348",
"R-BTA-1296348",
"R-MMU-1296043",
"R-RNO-1013020",
"R-MMU-1296127",
"R-RNO-5577050",
"R-CFA-1296045",
"R-BTA-1296039",
"R-RNO-5577234",
"R-TGU-1299338",
"R-RNO-1296039",
"R-TGU-1296039",
"R-XTR-1296127",
"R-SSC-1296039",
"R-DME-1296046",
"R-MMU-1299359",
"R-CEL-1296348",
"R-BTA-1296046",
"R-RNO-1299318",
"R-MMU-1299338",
"R-DRE-877187",
"R-MMU-5577050",
"R-BTA-1296037",
"R-RNO-1299359",
"R-GGA-1296043",
"R-DME-1013020",
"R-HSA-1299338",
"R-XTR-1296348",
"R-XTR-1299318",
"R-GGA-1299338",
"R-DRE-5577234",
"R-SSC-1296046",
"R-XTR-5578910",
"R-CFA-1296035",
"R-CFA-1296348",
"R-CFA-5577237",
"R-SSC-1296024",
"R-CEL-5577234",
"R-CFA-5578910",
"R-DRE-1296035",
"R-SSC-1296043",
"R-CFA-1299338",
"R-GGA-877187",
"R-HSA-5678261",
"R-CFA-2534365",
"R-HSA-1296127",
"R-HSA-1013020",
"R-BTA-5577234",
"R-DRE-1296348",
"R-MMU-1296024",
"R-BTA-1296035",
"R-DME-1299318",
"R-MMU-1296037",
"R-DRE-1296045",
"R-DRE-5577237",
"R-TGU-5577234",
"R-SSC-1299359",
"R-MMU-5578910",
"R-SSC-1013020",
"R-MMU-1296045",
"R-HSA-1296045",
"R-XTR-1296045",
"R-TGU-1299304",
"R-RNO-877187",
"R-MMU-2534365",
"R-CFA-877187",
"R-DRE-1296046",
"R-DRE-1299359",
"R-TGU-1296046",
"R-DME-1299338",
"R-TGU-5578910",
"R-RNO-1296035",
"R-SSC-1296348",
"R-XTR-1299359",
"R-MMU-5678261",
"R-SSC-1296127",
"R-BTA-1013020",
"R-CEL-5578910",
"R-GGA-1296037",
"R-GGA-5577237",
"R-XTR-1299304",
"R-GGA-5678261",
"R-SSC-1299297",
"R-MMU-1296046",
"R-TGU-5577050",
"R-DME-5578910",
"R-BTA-5577050",
"R-RNO-1299304",
"R-TGU-1013020",
"R-GGA-1299359",
"R-XTR-1013020",
"R-MMU-5577234",
"R-MMU-5577237",
"R-TGU-1369017",
"R-RNO-1296043",
"R-TGU-1296043",
"R-XTR-1296035",
"R-HSA-1296037",
"R-SSC-1296035",
"R-SSC-877187",
"R-CFA-1299318",
"R-DME-1296045",
"R-GGA-1296035",
"R-HSA-1299297",
"R-CFA-1296039",
"R-BTA-2534365",
"R-DME-1299359",
"R-BTA-877187",
"R-HSA-2534365",
"R-GGA-1369017",
"R-XTR-5577237",
"R-HSA-5577237",
"R-SSC-5577234",
"R-HSA-1296039",
"R-CEL-1296039",
"R-XTR-877187",
"R-SSC-5577237",
"R-DRE-1299318",
"R-GGA-1299304",
"R-BTA-1369017",
"R-MMU-1299318"
],
"rhea":[
"29463",
"29464",
"29466",
"29465"
],
"sabiork":[
"7044"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05206",
"rxn08771"
]
}
},
{
"id":"MCTP1Bpp",
"name":"Murein crosslinking transpeptidase 1B:(A2pm->A2pm) (periplasm)",
"metabolites":{
"alaala_p":1.0,
"murein5p5p_p":-1.0,
"murein5px3p_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0928 or Gmet_2778",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MCTP1Bpp"
]
},
"annotation":{
"bigg.reaction":[
"MCTP1Bpp"
],
"metanetx.reaction":[
"MNXR143204"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08888"
]
}
},
{
"id":"MCTP2App",
"name":"Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)",
"metabolites":{
"ala__D_p":2.0,
"murein5p5p5p_p":-1.0,
"murein5px4px4p_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0928 or Gmet_2778",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MCTP2App"
]
},
"annotation":{
"bigg.reaction":[
"MCTP2App"
],
"metanetx.reaction":[
"MNXR143205"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08889"
]
}
},
{
"id":"LA4NTGM1pp",
"name":"4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane))",
"metabolites":{
"gm1lipa_p":1.0,
"hghhlipa_p":-1.0,
"uLa4n_p":-1.0,
"udcpp_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0887",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"LA4NTGM1pp"
]
},
"annotation":{
"bigg.reaction":[
"LA4NTGM1pp"
],
"metanetx.reaction":[
"MNXR100952"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LA4NTGM2pp",
"name":"4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane))",
"metabolites":{
"gm2lipa_p":1.0,
"hghhlipan_p":-1.0,
"uLa4n_p":-1.0,
"udcpp_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0887",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"LA4NTGM2pp"
]
},
"annotation":{
"bigg.reaction":[
"LA4NTGM2pp"
],
"metanetx.reaction":[
"MNXR100953"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HISTD",
"name":"Histidinol dehydrogenase",
"metabolites":{
"h2o_c":-1.0,
"h_c":3.0,
"his__L_c":1.0,
"histd_c":-1.0,
"nad_c":-2.0,
"nadh_c":2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0384",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"HISTD"
]
},
"annotation":{
"bigg.reaction":[
"HISTD"
],
"biocyc":[
"META:RXN-8001"
],
"ec-code":[
"1.1.1.23"
],
"kegg.reaction":[
"R01158"
],
"metanetx.reaction":[
"MNXR100587"
],
"rhea":[
"20641",
"20642",
"20643",
"20644"
],
"sabiork":[
"1398"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00859"
]
}
},
{
"id":"LACD",
"name":"Lactate dehydrogenase",
"metabolites":{
"dhlplarg_c":-1.0,
"lac__D_c":2.0,
"lplarg_c":1.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"pyr_c":-2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_3245 and Gmet_3246) and Gmet_0985",
"subsystem":"Anaplerotic Pathway",
"notes":{
"original_bigg_ids":[
"LACD"
]
},
"annotation":{
"bigg.reaction":[
"LACD"
],
"metanetx.reaction":[
"MNXR100998"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MDDCP1pp",
"name":"Murein D,D-carboxypeptidase (murein5px4p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4px4p_p":1.0,
"murein5px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP1pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP1pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR143206"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08890"
]
}
},
{
"id":"MDDCP2pp",
"name":"Murein D,D-carboxypeptidase (murein5px4px4p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4px4px4p_p":1.0,
"murein5px4px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP2pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP2pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR143207"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08891"
]
}
},
{
"id":"MDDCP3pp",
"name":"Murein D,D-carboxypeptidase (murein5p5p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein5p4p_p":1.0,
"murein5p5p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP3pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP3pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR101431"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08892"
]
}
},
{
"id":"MDDCP4pp",
"name":"Murein D,D-carboxypeptidase (murein5p4p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4p4p_p":1.0,
"murein5p4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP4pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP4pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR143208"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08893"
]
}
},
{
"id":"MDDCP5pp",
"name":"Murein D,D-carboxypeptidase (murein5p3p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4p3p_p":1.0,
"murein5p3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP5pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP5pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR143209"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08894"
]
}
},
{
"id":"MDDEP1pp",
"name":"Murein D,D-endopeptidase (murein4px4p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein4p4p_p":1.0,
"murein4px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MDDEP1pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDEP1pp"
],
"metanetx.reaction":[
"MNXR143210"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08895"
]
}
},
{
"id":"MDDEP2pp",
"name":"Murein D,D-endopeptidase (murein3px4p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein3px4p_p":-1.0,
"murein4p3p_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00395341487519907,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MDDEP2pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDEP2pp"
],
"metanetx.reaction":[
"MNXR101435"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08896"
]
}
},
{
"id":"LADGMDH",
"name":"L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase",
"metabolites":{
"26dap__M_c":1.0,
"LalaDgluMdap_c":-1.0,
"LalaDglu_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0131780495839969,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"LADGMDH"
]
},
"annotation":{
"bigg.reaction":[
"LADGMDH"
],
"metanetx.reaction":[
"MNXR101002"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08773"
]
}
},
{
"id":"LALGP",
"name":"L-alanyl-gamma-L-glutamate peptidase",
"metabolites":{
"LalaLglu_c":-1.0,
"ala__L_c":1.0,
"glu__L_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"LALGP"
]
},
"annotation":{
"bigg.reaction":[
"LALGP"
],
"biocyc":[
"META:RXN0-6981"
],
"ec-code":[
"3.4.13.18"
],
"metanetx.reaction":[
"MNXR101011"
],
"rhea":[
"29336",
"29337",
"29335",
"29338"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08775"
]
}
},
{
"id":"LCD",
"name":"Lactoyl coA dehydratase",
"metabolites":{
"h2o_c":1.0,
"laccoa_c":-1.0,
"pp2coa_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0545",
"objective_coefficient":-0.341640935465117,
"subsystem":"Anaplerotic Pathway",
"notes":{
"original_bigg_ids":[
"LCD"
]
},
"annotation":{
"bigg.reaction":[
"LCD"
],
"ec-code":[
"4.2.1.54"
],
"kegg.reaction":[
"R02963"
],
"metanetx.reaction":[
"MNXR101022"
],
"rhea":[
"21058",
"21059",
"21057",
"21056"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02123"
]
}
},
{
"id":"LCYSTabcpp",
"name":"L-cysteate transport via ABC system (periplasm)",
"metabolites":{
"Lcyst_c":1.0,
"Lcyst_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1901 and Gmet_1899 and Gmet_1900) or (Gmet_0996 and Gmet_0997 and Gmet_0998)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"LCYSTabcpp"
]
},
"annotation":{
"bigg.reaction":[
"LCYSTabcpp"
],
"metanetx.reaction":[
"MNXR101033"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05599"
]
}
},
{
"id":"LCYSTtex",
"name":"L-cysteate transport via ABC system  (extracellular to periplasm)",
"metabolites":{
"Lcyst_e":-1.0,
"Lcyst_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"LCYSTtex"
]
},
"annotation":{
"bigg.reaction":[
"LCYSTtex"
],
"metanetx.reaction":[
"MNXR101035"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MDDEP3pp",
"name":"Murein D,D-endopeptidase (murein5px4p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein5p4p_p":1.0,
"murein5px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MDDEP3pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDEP3pp"
],
"metanetx.reaction":[
"MNXR101436"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08897"
]
}
},
{
"id":"MDDEP4pp",
"name":"Murein D,D-endopeptidase (murein4px4px4p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein4px4p4p_p":1.0,
"murein4px4px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-1.2334654410621,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MDDEP4pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDEP4pp"
],
"metanetx.reaction":[
"MNXR143211"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08898"
]
}
},
{
"id":"MDH",
"name":"Malate dehydrogenase",
"metabolites":{
"h_c":1.0,
"mal__L_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"oaa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1360",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"MDH"
]
},
"annotation":{
"bigg.reaction":[
"MDH"
],
"biocyc":[
"META:MALATE-DEH-RXN"
],
"ec-code":[
"1.1.1.37",
"1.1.1.299"
],
"kegg.reaction":[
"R00342"
],
"metanetx.reaction":[
"MNXR101439"
],
"reactome.reaction":[
"R-BTA-70979",
"R-BTA-198508",
"R-SCE-70979",
"R-GGA-70979",
"R-MMU-71783",
"R-RNO-71783",
"R-DDI-198508",
"R-CFA-71783",
"R-CFA-198508",
"R-ATH-70979",
"R-DME-198508",
"R-TGU-71783",
"R-HSA-71783",
"R-BTA-71783",
"R-DRE-198508",
"R-SPO-70979",
"R-GGA-71783",
"R-TGU-198508",
"R-GGA-372422",
"R-CEL-71783",
"R-XTR-70979",
"R-RNO-198508",
"R-MMU-70979",
"R-SPO-71783",
"R-ATH-71783",
"R-MMU-198508",
"R-DME-70979",
"R-TGU-70979",
"R-CEL-198508",
"R-DME-71783",
"R-DRE-70979",
"R-OSA-71783",
"R-SSC-198508",
"R-GGA-372855",
"R-SSC-70979",
"R-OSA-70979",
"R-GGA-373047",
"R-GGA-198508",
"R-SSC-71783",
"R-HSA-70979",
"R-CFA-70979",
"R-XTR-71783",
"R-HSA-198508",
"R-XTR-198508",
"R-SCE-71783",
"R-RNO-70979",
"R-DRE-71783",
"R-CEL-70979"
],
"rhea":[
"21432",
"21433",
"21434",
"21435"
],
"sabiork":[
"113"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00248"
]
}
},
{
"id":"ME2",
"name":"Malic enzyme (NADP)",
"metabolites":{
"co2_c":1.0,
"mal__L_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1637",
"objective_coefficient":-0.00658902479199841,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ME2"
]
},
"annotation":{
"bigg.reaction":[
"ME2"
],
"biocyc":[
"META:MALIC-NADP-RXN"
],
"ec-code":[
"1.1.1.40"
],
"kegg.reaction":[
"R00216"
],
"metanetx.reaction":[
"MNXR101443"
],
"rhea":[
"18255",
"18256",
"18254",
"18253"
],
"sabiork":[
"142"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00161"
]
}
},
{
"id":"LDAPAT",
"name":"LL-diaminopimelate aminotransferase",
"metabolites":{
"26dap_LL_c":-1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"h2o_c":1.0,
"h_c":1.0,
"thdp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0213",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"LDAPAT"
]
},
"annotation":{
"bigg.reaction":[
"LDAPAT"
],
"biocyc":[
"META:RXN-7737"
],
"ec-code":[
"2.6.1.83"
],
"kegg.reaction":[
"R07613"
],
"metanetx.reaction":[
"MNXR97144"
],
"rhea":[
"23991",
"23990",
"23989",
"23988"
],
"sabiork":[
"12290"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07441"
]
}
},
{
"id":"LDGUNPD",
"name":"Linear diguanylate phosphodiesterase",
"metabolites":{
"5pg35pg_c":-1.0,
"gmp_c":2.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.0131780495839969,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"LDGUNPD"
]
},
"annotation":{
"bigg.reaction":[
"LDGUNPD"
],
"metanetx.reaction":[
"MNXR101036"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MECDPDH4",
"name":"2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase",
"metabolites":{
"2mecdp_c":-1.0,
"fdxo_42_c":1.0,
"fdxr_42_c":-1.0,
"h2mb4p_c":1.0,
"h2o_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1353",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MECDPDH4"
]
},
"annotation":{
"bigg.reaction":[
"MECDPDH4"
],
"metanetx.reaction":[
"MNXR101449"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HISTP",
"name":"Histidinol-phosphatase",
"metabolites":{
"h2o_c":-1.0,
"hisp_c":-1.0,
"histd_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0697",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"HISTP"
]
},
"annotation":{
"bigg.reaction":[
"HISTP"
],
"biocyc":[
"META:HISTIDPHOS-RXN"
],
"ec-code":[
"3.1.3.15"
],
"kegg.reaction":[
"R03013"
],
"metanetx.reaction":[
"MNXR100642"
],
"rhea":[
"14466",
"14467",
"14468",
"14465"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02160"
]
}
},
{
"id":"HISTRS",
"name":"Histidyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"his__L_c":-1.0,
"histrna_c":1.0,
"ppi_c":1.0,
"trnahis_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3259 or Gmet_1913",
"objective_coefficient":-0.100482628077976,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"HISTRS"
]
},
"annotation":{
"bigg.reaction":[
"HISTRS"
],
"ec-code":[
"6.1.1.21"
],
"kegg.reaction":[
"R03655"
],
"metanetx.reaction":[
"MNXR100643"
],
"reactome.reaction":[
"R-HSA-380234",
"R-HSA-379844"
],
"sabiork":[
"410"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06439"
]
}
},
{
"id":"MECDPS",
"name":"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase",
"metabolites":{
"2mecdp_c":1.0,
"2p4c2me_c":-1.0,
"cmp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0059",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MECDPS"
]
},
"annotation":{
"bigg.reaction":[
"MECDPS"
],
"biocyc":[
"META:RXN0-302"
],
"ec-code":[
"4.6.1.12"
],
"kegg.reaction":[
"R05637"
],
"metanetx.reaction":[
"MNXR101424"
],
"rhea":[
"23864",
"23867",
"23866",
"23865"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03910"
]
}
},
{
"id":"HKtpp",
"name":"H+/K+ gastric/non-gastric P-ATPase and ABC ATPase (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_p":1.0,
"k_c":1.0,
"k_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2433 and Gmet_2434 and Gmet_2435",
"objective_coefficient":-0.0026356099167994,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"HKtpp"
]
},
"annotation":{
"bigg.reaction":[
"HKtpp"
],
"biocyc":[
"META:3.6.3.12-RXN",
"META:TRANS-RXN-2",
"META:3.6.3.10-RXN"
],
"ec-code":[
"3.6.3.10",
"3.6.3.12"
],
"metanetx.reaction":[
"MNXR100657"
],
"rhea":[
"16777#1",
"16778#1",
"16779#1",
"16780#1"
],
"sabiork":[
"9646#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08762",
"rxn10168",
"rxn10558"
]
}
},
{
"id":"MEOHtex",
"name":"Methanol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"meoh_e":-1.0,
"meoh_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"MEOHtex"
]
},
"annotation":{
"bigg.reaction":[
"MEOHtex"
],
"biocyc":[
"META:TRANS-RXN0-459"
],
"metanetx.reaction":[
"MNXR101464"
],
"rhea":[
"34873",
"34872",
"34874",
"34871"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10570"
]
}
},
{
"id":"MEOHtrpp",
"name":"Methanol reversible transport via diffusion (periplasm)",
"metabolites":{
"meoh_c":1.0,
"meoh_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"MEOHtrpp"
]
},
"annotation":{
"bigg.reaction":[
"MEOHtrpp"
],
"biocyc":[
"META:TRANS-RXN0-459"
],
"metanetx.reaction":[
"MNXR101464"
],
"rhea":[
"34873",
"34872",
"34874",
"34871"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10570"
]
}
},
{
"id":"HMBS",
"name":"Hydroxymethylbilane synthase",
"metabolites":{
"h2o_c":-1.0,
"hmbil_c":1.0,
"nh4_c":4.0,
"ppbng_c":-4.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3234",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"HMBS"
]
},
"annotation":{
"bigg.reaction":[
"HMBS"
],
"biocyc":[
"META:OHMETHYLBILANESYN-RXN"
],
"ec-code":[
"2.5.1.61",
"4.3.1.8"
],
"kegg.reaction":[
"R00084"
],
"metanetx.reaction":[
"MNXR100658"
],
"reactome.reaction":[
"R-GGA-421439",
"R-XTR-189406",
"R-DRE-189406",
"R-BTA-189406",
"R-GGA-189406",
"R-MMU-189406",
"R-OSA-189406",
"R-PFA-189406",
"R-SSC-189406",
"R-SPO-189406",
"R-DDI-189406",
"R-DME-189406",
"R-SCE-189406",
"R-HSA-189406",
"R-RNO-189406",
"R-CFA-189406",
"R-ATH-189406",
"R-TGU-189406"
],
"rhea":[
"13187",
"13186",
"13185",
"13188"
],
"sabiork":[
"669"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00060"
]
}
},
{
"id":"MEPCT",
"name":"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase",
"metabolites":{
"2me4p_c":-1.0,
"4c2me_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0060",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MEPCT"
]
},
"annotation":{
"bigg.reaction":[
"MEPCT"
],
"biocyc":[
"META:2.7.7.60-RXN"
],
"ec-code":[
"2.7.7.60"
],
"kegg.reaction":[
"R05633"
],
"metanetx.reaction":[
"MNXR96807"
],
"rhea":[
"13430",
"13429",
"13432",
"13431"
],
"sabiork":[
"5231"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03907"
]
}
},
{
"id":"AHSERL2",
"name":"O acetylhomoserine  thiol  lyase",
"metabolites":{
"ac_c":1.0,
"achms_c":-1.0,
"h2s_c":-1.0,
"h_c":1.0,
"hcys__L_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1566 or Gmet_2390 or Gmet_0819",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"METACH"
]
},
"annotation":{
"bigg.reaction":[
"AHSERL2"
],
"biocyc":[
"META:ACETYLHOMOSER-CYS-RXN"
],
"ec-code":[
"2.5.1.49"
],
"kegg.reaction":[
"R01287"
],
"metanetx.reaction":[
"MNXR95631"
],
"rhea":[
"27824",
"27823",
"27822",
"27825"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00952"
]
}
},
{
"id":"LEUTA",
"name":"Leucine transaminase",
"metabolites":{
"4mop_c":1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"leu__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2853",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"LEUTA"
]
},
"annotation":{
"bigg.reaction":[
"LEUTA"
],
"biocyc":[
"META:BRANCHED-CHAINAMINOTRANSFERLEU-RXN"
],
"ec-code":[
"2.6.1.42",
"2.6.1.6",
"2.6.1.67"
],
"kegg.reaction":[
"R01090"
],
"metanetx.reaction":[
"MNXR96229"
],
"rhea":[
"18323",
"18324",
"18321",
"18322"
],
"sabiork":[
"1352"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00806"
]
}
},
{
"id":"LEUTRS",
"name":"Leucyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"leu__L_c":-1.0,
"leutrna_c":1.0,
"ppi_c":1.0,
"trnaleu_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2300",
"objective_coefficient":-0.0579834181695855,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"LEUTRS"
]
},
"annotation":{
"bigg.reaction":[
"LEUTRS"
],
"ec-code":[
"6.1.1.4"
],
"kegg.reaction":[
"R03657"
],
"metanetx.reaction":[
"MNXR101053"
],
"reactome.reaction":[
"R-HSA-379974",
"R-HSA-380200"
],
"sabiork":[
"412"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06441"
]
}
},
{
"id":"METAT",
"name":"Methionine adenosyltransferase",
"metabolites":{
"amet_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"met__L_c":-1.0,
"pi_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1290 or Gmet_2549",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"METAT"
]
},
"annotation":{
"bigg.reaction":[
"METAT"
],
"biocyc":[
"META:S-ADENMETSYN-RXN"
],
"ec-code":[
"2.5.1.6"
],
"kegg.reaction":[
"R00177"
],
"metanetx.reaction":[
"MNXR101407"
],
"reactome.reaction":[
"R-RNO-174391",
"R-SPO-174391",
"R-SCE-174391",
"R-XTR-174391",
"R-ATH-5603114",
"R-MMU-174391",
"R-CFA-174391",
"R-OSA-174391",
"R-MMU-5603114",
"R-DRE-5603114",
"R-DDI-5603114",
"R-ATH-174391",
"R-GGA-174391",
"R-DME-174391",
"R-DRE-174391",
"R-HSA-174391",
"R-PFA-174391",
"R-BTA-5603114",
"R-SSC-5603114",
"R-HSA-5603114",
"R-BTA-174391",
"R-OSA-5603114",
"R-DDI-174391",
"R-RNO-5603114",
"R-TGU-174391",
"R-CFA-5603114",
"R-XTR-5603114",
"R-CEL-174391",
"R-SSC-174391"
],
"rhea":[
"21082",
"21081",
"21080",
"21083"
],
"sabiork":[
"96"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00126"
]
}
},
{
"id":"METOX1s",
"name":"Methionine oxidation (spontaneous)",
"metabolites":{
"h2o2_c":-1.0,
"h2o_c":1.0,
"met__L_c":-1.0,
"metsox_S__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"s_0001",
"objective_coefficient":-0.00395341487519907,
"subsystem":"Spontaneous Reaction",
"notes":{
"original_bigg_ids":[
"METOX1s"
]
},
"annotation":{
"bigg.reaction":[
"METOX1s"
],
"metanetx.reaction":[
"MNXR101479"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08912",
"rxn09942"
]
}
},
{
"id":"LEUabcpp",
"name":"L-leucine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"leu__L_c":1.0,
"leu__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1819 and Gmet_1820 and Gmet_1821 and Gmet_1822 and Gmet_1823",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"LEUabcpp"
]
},
"annotation":{
"bigg.reaction":[
"LEUabcpp"
],
"biocyc":[
"META:ABC-35-RXN"
],
"metanetx.reaction":[
"MNXR101054"
],
"rhea":[
"29810#1",
"29808#1",
"29809#1",
"29807#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05161",
"rxn08784"
]
}
},
{
"id":"HMGL",
"name":"Hydroxymethylglutaryl-CoA lyase",
"metabolites":{
"acac_c":1.0,
"accoa_c":1.0,
"hmgcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3293",
"subsystem":"Valine, leucine and isoleucine degradation",
"notes":{
"original_bigg_ids":[
"HMGL"
]
},
"annotation":{
"bigg.reaction":[
"HMGL"
],
"ec-code":[
"4.1.3.4"
],
"metanetx.reaction":[
"MNXR100662"
],
"sabiork":[
"1564"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LEUtex",
"name":"L-leucine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"leu__L_e":-1.0,
"leu__L_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"LEUtex"
]
},
"annotation":{
"bigg.reaction":[
"LEUtex"
],
"biocyc":[
"META:RXN66-447"
],
"metanetx.reaction":[
"MNXR101057"
],
"sabiork":[
"13056"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08786",
"rxn11003"
]
}
},
{
"id":"LIPA3ODAex",
"name":"Lipid A 3-O-deacetylase (n-C14:0) (extracellular membrane)",
"metabolites":{
"3httdca_e":1.0,
"h2o_e":-1.0,
"h_e":1.0,
"lipa_e":-1.0,
"lipb_e":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1704",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"LIPA3ODAex"
]
},
"annotation":{
"bigg.reaction":[
"LIPA3ODAex"
],
"metanetx.reaction":[
"MNXR101076"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LIPAabcpp",
"name":"Lipid A transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"lipa_c":-1.0,
"lipa_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"LIPAabcpp"
]
},
"annotation":{
"bigg.reaction":[
"LIPAabcpp"
],
"metanetx.reaction":[
"MNXR101082"
],
"rhea":[
"35251#1",
"35254#1",
"35253#1",
"35252#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08787"
]
}
},
{
"id":"LIPAabctex",
"name":"Lipid A transport via ABC system (periplasm to extracellular)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"lipa_e":1.0,
"lipa_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1281 and Gmet_1282 and Gmet_1280 and Gmet_2474 and Gmet_2299 and Gmet_1249 and Gmet_1248",
"objective_coefficient":-1.34613776500527,
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"LIPAabctex"
]
},
"annotation":{
"bigg.reaction":[
"LIPAabctex"
],
"metanetx.reaction":[
"MNXR101083"
],
"sbo":"SBO:0000185"
}
},
{
"id":"METOX2s",
"name":"Methionine oxidation 2 (spontaneous)",
"metabolites":{
"h2o2_c":-1.0,
"h2o_c":1.0,
"met__L_c":-1.0,
"metsox_R__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"s_0001",
"objective_coefficient":-0.00395341487519907,
"subsystem":"Spontaneous Reaction",
"notes":{
"original_bigg_ids":[
"METOX2s"
]
},
"annotation":{
"bigg.reaction":[
"METOX2s"
],
"biocyc":[
"META:RXN0-7188"
],
"metanetx.reaction":[
"MNXR138590"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08913"
]
}
},
{
"id":"METS",
"name":"Methionine synthase",
"metabolites":{
"5mthf_c":-1.0,
"h_c":1.0,
"hcys__L_c":-1.0,
"met__L_c":1.0,
"thf_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0549",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"METS"
]
},
"annotation":{
"bigg.reaction":[
"METS"
],
"ec-code":[
"2.1.1.13"
],
"kegg.reaction":[
"R00946"
],
"metanetx.reaction":[
"MNXR101481"
],
"rhea":[
"11173",
"11175",
"11174",
"11172"
],
"sabiork":[
"1260"
],
"sbo":"SBO:0000176"
}
},
{
"id":"METSOXR1",
"name":"L-methionine-S-oxide reductase",
"metabolites":{
"h2o_c":1.0,
"met__L_c":1.0,
"metsox_S__L_c":-1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0268 or Gmet_0222",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"METSOXR1"
]
},
"annotation":{
"bigg.reaction":[
"METSOXR1"
],
"ec-code":[
"1.8.4.14",
"1.8.4.13"
],
"kegg.reaction":[
"R02025"
],
"metanetx.reaction":[
"MNXR101484"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06077",
"rxn08918"
]
}
},
{
"id":"METSOXR2",
"name":"L-methionine-R-sulfoxide reductase",
"metabolites":{
"h2o_c":1.0,
"met__L_c":1.0,
"metsox_R__L_c":-1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0222",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"METSOXR2"
]
},
"annotation":{
"bigg.reaction":[
"METSOXR2"
],
"biocyc":[
"META:1.8.4.14-RXN"
],
"ec-code":[
"1.8.4.14"
],
"kegg.reaction":[
"R07608"
],
"metanetx.reaction":[
"MNXR138594"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08919",
"rxn07439"
]
}
},
{
"id":"METTRS",
"name":"Methionyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"met__L_c":-1.0,
"mettrna_c":1.0,
"ppi_c":1.0,
"trnamet_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2321",
"objective_coefficient":-0.0846689685771796,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"METTRS"
]
},
"annotation":{
"bigg.reaction":[
"METTRS"
],
"ec-code":[
"6.1.1.10"
],
"kegg.reaction":[
"R03659"
],
"metanetx.reaction":[
"MNXR101488"
],
"sabiork":[
"355"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06443"
]
}
},
{
"id":"LPADSS",
"name":"Lipid A disaccaride synthase",
"metabolites":{
"h_c":1.0,
"lipidAds_c":1.0,
"lipidX_c":-1.0,
"u23ga_c":-1.0,
"udp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2350",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"LPADSS"
]
},
"annotation":{
"bigg.reaction":[
"LPADSS"
],
"biocyc":[
"META:LIPIDADISACCHARIDESYNTH-RXN"
],
"ec-code":[
"2.4.1.182"
],
"kegg.reaction":[
"R04606"
],
"metanetx.reaction":[
"MNXR101119"
],
"rhea":[
"22668",
"22669",
"22671",
"22670"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03159"
]
}
},
{
"id":"LPADSSN",
"name":"Lipid A disaccaride synthase (glucosediaminyl)",
"metabolites":{
"h_c":1.0,
"lipidAdsn_c":1.0,
"lipidXn_c":-1.0,
"u23gn_c":-1.0,
"udp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2350",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"LPADSSN"
]
},
"annotation":{
"bigg.reaction":[
"LPADSSN"
],
"metanetx.reaction":[
"MNXR101120"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MG2tex",
"name":"Magnesium (Mg+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mg2_e":-1.0,
"mg2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"MG2tex"
]
},
"annotation":{
"bigg.reaction":[
"MG2tex"
],
"biocyc":[
"META:TRANS-RXN-141"
],
"metanetx.reaction":[
"MNXR101507"
],
"reactome.reaction":[
"R-MMU-442661",
"R-OSA-5336466",
"R-BTA-5336453",
"R-SSC-442661",
"R-MMU-5336453",
"R-HSA-5339528",
"R-MMU-5336466",
"R-TGU-5339538",
"R-SCE-5336466",
"R-SCE-5339538",
"R-XTR-5336466",
"R-GGA-442661",
"R-ATH-5336453",
"R-BTA-5336466",
"R-RNO-5339538",
"R-SSC-5339538",
"R-SPO-5339528",
"R-DME-5339528",
"R-GGA-5339538",
"R-CEL-5336453",
"R-TGU-5336453",
"R-OSA-5336453",
"R-SCE-5339528",
"R-ATH-5336466",
"R-CFA-5336453",
"R-CEL-5339528",
"R-SPO-5339538",
"R-SSC-5336466",
"R-XTR-5339528",
"R-SSC-5339528",
"R-DRE-5339528",
"R-BTA-5339528",
"R-CFA-442661",
"R-CFA-5339538",
"R-DME-442661",
"R-DME-5339538",
"R-DRE-5339538",
"R-MMU-5339538",
"R-RNO-442661",
"R-RNO-5336453",
"R-DDI-5336466",
"R-RNO-5339528",
"R-HSA-442661",
"R-HSA-5336453",
"R-TGU-5336466",
"R-DRE-5336466",
"R-BTA-442661",
"R-DRE-5336453",
"R-HSA-5339538",
"R-HSA-5336454",
"R-TGU-5339528",
"R-GGA-5339528",
"R-XTR-5339538",
"R-MMU-5339528",
"R-DME-5336453",
"R-RNO-5336466",
"R-CFA-5336466",
"R-CEL-442661",
"R-SPO-5336466",
"R-GGA-5336453",
"R-BTA-5339538",
"R-TGU-442661",
"R-HSA-5336466",
"R-XTR-442661",
"R-CEL-5339538",
"R-MMU-5336430",
"R-DRE-442661",
"R-GGA-5336466",
"R-CFA-5339528"
],
"rhea":[
"29827",
"29828",
"29829",
"29830"
],
"sabiork":[
"12062"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05616",
"rxn08922",
"rxn08923"
]
}
},
{
"id":"MG2uabcpp",
"name":"Magnesium (Mg+2) ABC transporter (ubtake, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"mg2_c":1.0,
"mg2_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1614",
"objective_coefficient":-0.0046123173543989,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"MG2uabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MG2uabcpp"
],
"biocyc":[
"META:TRANS-RXN-250",
"META:3.6.3.2-RXN"
],
"ec-code":[
"3.6.3.2"
],
"metanetx.reaction":[
"MNXR101505"
],
"rhea":[
"10261#1",
"10262#1",
"10260#1",
"10263#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08924",
"rxn10571"
]
}
},
{
"id":"LPD5",
"name":"Dihydrolipoamide dehydrogenase",
"metabolites":{
"dhlplarg_c":-1.0,
"h_c":1.0,
"lplarg_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0985 and Gmet_2764) or (Gmet_0985 and Gmet_1896)",
"notes":{
"original_bigg_ids":[
"LPD5"
]
},
"annotation":{
"bigg.reaction":[
"LPD5"
],
"metanetx.reaction":[
"MNXR101133"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HMPK1",
"name":"Hydroxymethylpyrimidine kinase (ATP)",
"metabolites":{
"4ahmmp_c":-1.0,
"4ampm_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2909",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"HMPK1"
]
},
"annotation":{
"bigg.reaction":[
"HMPK1"
],
"ec-code":[
"2.7.1.49"
],
"metanetx.reaction":[
"MNXR143164"
],
"sabiork":[
"3265"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02484"
]
}
},
{
"id":"LYSTRS",
"name":"Lysyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"lys__L_c":-1.0,
"lystrna_c":1.0,
"ppi_c":1.0,
"trnalys_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2360",
"objective_coefficient":-0.0724792727119822,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"LYSTRS"
]
},
"annotation":{
"bigg.reaction":[
"LYSTRS"
],
"ec-code":[
"6.1.1.6"
],
"kegg.reaction":[
"R03658"
],
"metanetx.reaction":[
"MNXR101264"
],
"reactome.reaction":[
"R-HSA-380008",
"R-HSA-380233"
],
"sabiork":[
"414"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08857",
"rxn06442"
]
}
},
{
"id":"LYSt3pp",
"name":"L-lysine transport out via proton antiport (cytoplasm to periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"lys__L_c":-1.0,
"lys__L_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0798",
"objective_coefficient":-0.0698436627951828,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"LYSt3pp"
]
},
"annotation":{
"bigg.reaction":[
"LYSt3pp"
],
"metanetx.reaction":[
"MNXR101267"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05305",
"rxn08855",
"rxn13343"
]
}
},
{
"id":"LYStex",
"name":"L-lysine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"lys__L_e":-1.0,
"lys__L_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"LYStex"
]
},
"annotation":{
"bigg.reaction":[
"LYStex"
],
"biocyc":[
"META:TRANS-RXN0-569"
],
"metanetx.reaction":[
"MNXR101269"
],
"sabiork":[
"7984"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10834",
"rxn08856"
]
}
},
{
"id":"MGCH",
"name":"Methylglutaconyl-CoA hydratase",
"metabolites":{
"3mgcoa_c":-1.0,
"h2o_c":-1.0,
"hmgcoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3291",
"subsystem":"Valine, leucine and isoleucine degradation",
"notes":{
"original_bigg_ids":[
"MGCHr"
]
},
"annotation":{
"bigg.reaction":[
"MGCH"
],
"ec-code":[
"4.2.1.18"
],
"metanetx.reaction":[
"MNXR101513"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MGt2pp",
"name":"Magnesium transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"mg2_c":1.0,
"mg2_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1189 or Gmet_0134",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"MGt2pp"
]
},
"annotation":{
"bigg.reaction":[
"MGt2pp"
],
"metanetx.reaction":[
"MNXR101553"
],
"sbo":"SBO:0000185"
}
},
{
"id":"LacR",
"name":"Lactate racemase",
"metabolites":{
"lac__D_c":1.0,
"lac__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3244",
"subsystem":"Anaplerotic Pathway",
"notes":{
"original_bigg_ids":[
"LacR"
]
},
"annotation":{
"bigg.reaction":[
"LacR"
],
"biocyc":[
"META:LACTATE-RACEMASE-RXN"
],
"ec-code":[
"5.1.2.1"
],
"kegg.reaction":[
"R01450"
],
"metanetx.reaction":[
"MNXR101281"
],
"rhea":[
"10962",
"10963",
"10961",
"10960"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01057"
]
}
},
{
"id":"MICITDr",
"name":"2-methylisocitrate dehydratase",
"metabolites":{
"2mcacn_c":-1.0,
"h2o_c":-1.0,
"micit_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1016 or Gmet_1912 or Gmet_2763",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MICITD"
]
},
"annotation":{
"bigg.reaction":[
"MICITDr"
],
"biocyc":[
"META:4.2.1.99-RXN"
],
"ec-code":[
"4.2.1.99"
],
"kegg.reaction":[
"R04425"
],
"metanetx.reaction":[
"MNXR101580"
],
"rhea":[
"17943",
"17944",
"17942",
"17941"
],
"sabiork":[
"4112"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03061"
]
}
},
{
"id":"HMPK2",
"name":"Hydroxymethylpyrimidine kinase (CTP)",
"metabolites":{
"4ahmmp_c":-1.0,
"4ampm_c":1.0,
"cdp_c":1.0,
"ctp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2909",
"objective_coefficient":-2.77555756156289e-17,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"HMPK2"
]
},
"annotation":{
"bigg.reaction":[
"HMPK2"
],
"metanetx.reaction":[
"MNXR143165"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10625"
]
}
},
{
"id":"MLDCP1App",
"name":"Murein L,D-carboxypeptidase (murein5px4p) (periplasm)",
"metabolites":{
"alaala_p":1.0,
"h2o_p":-1.0,
"murein3px4p_p":1.0,
"murein5px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP1App"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP1App"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143237"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08926"
]
}
},
{
"id":"MLDCP1Bpp",
"name":"Murein L,D-carboxypeptidase (murein4p4p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4p3p_p":1.0,
"murein4p4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00790682975039812,
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP1Bpp"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP1Bpp"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143238"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08927"
]
}
},
{
"id":"MLDCP2App",
"name":"Murein L,D-carboxypeptidase (murein5p5p) (periplasm)",
"metabolites":{
"alaala_p":1.0,
"h2o_p":-1.0,
"murein5p3p_p":1.0,
"murein5p5p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00395341487519904,
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP2App"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP2App"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143239"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08928"
]
}
},
{
"id":"MLDCP2Bpp",
"name":"Murein L,D-carboxypeptidase (murein4p3p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein3p3p_p":1.0,
"murein4p3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP2Bpp"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP2Bpp"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143240"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08929"
]
}
},
{
"id":"MACPD",
"name":"Malonyl-ACP decarboxylase",
"metabolites":{
"acACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603 or Gmet_1599 or Gmet_3272",
"objective_coefficient":-0.00658902479199845,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"MACPD"
]
},
"annotation":{
"bigg.reaction":[
"MACPD"
],
"biocyc":[
"META:MALONYL-ACPDECARBOX-RXN"
],
"ec-code":[
"2.3.1",
"4.1.1.87"
],
"kegg.reaction":[
"R09482"
],
"metanetx.reaction":[
"MNXR101327"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08861"
]
}
},
{
"id":"MALCOAMT",
"name":"Malonyl-CoA methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"malcoa_c":-1.0,
"malcoame_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0844",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MALCOAMT"
]
},
"annotation":{
"bigg.reaction":[
"MALCOAMT"
],
"metanetx.reaction":[
"MNXR101337"
],
"rhea":[
"34900",
"34899",
"34902",
"34901"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MAN1PT",
"name":"Mannose 1 phosphate guanylyltransferase",
"metabolites":{
"gdpmann_c":1.0,
"gtp_c":-1.0,
"h_c":-1.0,
"man1p_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3178",
"objective_coefficient":-0.229627514001145,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"MAN1PT"
]
},
"annotation":{
"bigg.reaction":[
"MAN1PT"
],
"biocyc":[
"META:2.7.7.13-RXN"
],
"ec-code":[
"2.7.7.13"
],
"kegg.reaction":[
"R00885"
],
"metanetx.reaction":[
"MNXR101375"
],
"rhea":[
"15230",
"15232",
"15231",
"15229"
],
"sabiork":[
"8539",
"587"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00641"
]
}
},
{
"id":"MAN1PT2",
"name":"Mannose-1-phosphate guanylyltransferase (GDP)",
"metabolites":{
"gdp_c":-1.0,
"gdpmann_c":1.0,
"h_c":-1.0,
"man1p_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1104",
"objective_coefficient":-0.229627514001145,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"MAN1PT2"
]
},
"annotation":{
"bigg.reaction":[
"MAN1PT2"
],
"biocyc":[
"META:MANNPGUANYLTRANGDP-RXN"
],
"ec-code":[
"2.7.7.22"
],
"kegg.reaction":[
"R00883"
],
"metanetx.reaction":[
"MNXR101376"
],
"rhea":[
"12906",
"12908",
"12907",
"12905"
],
"sabiork":[
"9123"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00640"
]
}
},
{
"id":"UM4PCP",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase",
"metabolites":{
"ala__D_c":1.0,
"h2o_c":-1.0,
"ugmd_c":1.0,
"um4p_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"UM4PCP"
]
},
"annotation":{
"bigg.reaction":[
"UM4PCP"
],
"metanetx.reaction":[
"MNXR105116"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MLDCP3App",
"name":"Murein L,D-carboxypeptidase (murein5px3p) (periplasm)",
"metabolites":{
"alaala_p":1.0,
"h2o_p":-1.0,
"murein3px3p_p":1.0,
"murein5px3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP3App"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP3App"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143241"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08930"
]
}
},
{
"id":"MLDEP1pp",
"name":"Murein L,D-endopeptidase (murein3px3p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein3p3p_p":1.0,
"murein3px3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0348 or Gmet_1681 or Gmet_1750 or Gmet_1854 or Gmet_2529 or Gmet_2530 or Gmet_3012 or Gmet_1238 or Gmet_1350",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLDEP1pp"
]
},
"annotation":{
"bigg.reaction":[
"MLDEP1pp"
],
"metanetx.reaction":[
"MNXR143242"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08931"
]
}
},
{
"id":"MLDEP2pp",
"name":"Murein L,D-endopeptidase (murein5px3p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein5p3p_p":1.0,
"murein5px3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0348 or Gmet_1681 or Gmet_1750 or Gmet_1854 or Gmet_2529 or Gmet_2530 or Gmet_3012 or Gmet_1238 or Gmet_1350",
"objective_coefficient":-0.00395341487519907,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLDEP2pp"
]
},
"annotation":{
"bigg.reaction":[
"MLDEP2pp"
],
"metanetx.reaction":[
"MNXR143243"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08932"
]
}
},
{
"id":"MLTGY1pp",
"name":"Murein lytic transglycosylase (murein4p4p) (periplasm)",
"metabolites":{
"anhgm4p_p":2.0,
"murein4p4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1377 or Gmet_1953 or Gmet_2481 or Gmet_2556 or Gmet_3262",
"objective_coefficient":-2.46693088212419,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLTGY1pp"
]
},
"annotation":{
"bigg.reaction":[
"MLTGY1pp"
],
"metanetx.reaction":[
"MNXR143245"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08937"
]
}
},
{
"id":"MLTGY2pp",
"name":"Murein lytic transglycosylase (murein4p3p) (periplasm)",
"metabolites":{
"anhgm3p_p":1.0,
"anhgm4p_p":1.0,
"murein4p3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1377 or Gmet_1953 or Gmet_2481 or Gmet_2556 or Gmet_3262",
"objective_coefficient":-2.45902405237379,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLTGY2pp"
]
},
"annotation":{
"bigg.reaction":[
"MLTGY2pp"
],
"metanetx.reaction":[
"MNXR143246"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08938"
]
}
},
{
"id":"MOBDabcpp",
"name":"Molybdate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"mobd_c":1.0,
"mobd_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1903 and Gmet_1906 and Gmet_1905 and Gmet_1904) or (Gmet_0512 and Gmet_0513 and Gmet_0514)",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"MOBDabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MOBDabcpp"
],
"biocyc":[
"META:3.6.3.29-RXN",
"META:ABC-19-RXN"
],
"ec-code":[
"3.6.3.29"
],
"metanetx.reaction":[
"MNXR101689"
],
"rhea":[
"22020#1",
"22023#1",
"22021#1",
"22022#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05619",
"rxn08955"
]
}
},
{
"id":"MLTGY3pp",
"name":"Murein lytic transglycosylase (murein3p3p) (periplasm)",
"metabolites":{
"anhgm3p_p":2.0,
"murein3p3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1377 or Gmet_1953 or Gmet_2481 or Gmet_2556 or Gmet_3262",
"objective_coefficient":-2.45902405237379,
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLTGY3pp"
]
},
"annotation":{
"bigg.reaction":[
"MLTGY3pp"
],
"metanetx.reaction":[
"MNXR143247"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08939"
]
}
},
{
"id":"HMPK3",
"name":"Hydroxymethylpyrimidine kinase (UTP)",
"metabolites":{
"4ahmmp_c":-1.0,
"4ampm_c":1.0,
"h_c":1.0,
"udp_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2909",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"HMPK3"
]
},
"annotation":{
"bigg.reaction":[
"HMPK3"
],
"metanetx.reaction":[
"MNXR143166"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10622"
]
}
},
{
"id":"MLTGY4pp",
"name":"Murein lytic transglycosylase (murein4px4p4p) (periplasm)",
"metabolites":{
"anhgm4p_p":1.0,
"murein4px4p4p_p":-1.0,
"murein4px4p_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1377 or Gmet_1953 or Gmet_2481 or Gmet_2556 or Gmet_3262",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLTGY4pp"
]
},
"annotation":{
"bigg.reaction":[
"MLTGY4pp"
],
"metanetx.reaction":[
"MNXR143248"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08940"
]
}
},
{
"id":"MME",
"name":"Methylmalonyl-CoA epimerase",
"metabolites":{
"mmcoa__R_c":-1.0,
"mmcoa__S_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3253",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"MME"
]
},
"annotation":{
"bigg.reaction":[
"MME"
],
"biocyc":[
"META:METHYLMALONYL-COA-EPIM-RXN"
],
"ec-code":[
"5.1.99.1"
],
"kegg.reaction":[
"R02765"
],
"metanetx.reaction":[
"MNXR101657"
],
"reactome.reaction":[
"R-DRE-71020",
"R-RNO-71020",
"R-CFA-71020",
"R-GGA-71020",
"R-CEL-71020",
"R-BTA-71020",
"R-XTR-71020",
"R-DDI-71020",
"R-SSC-71020",
"R-HSA-71020",
"R-TGU-71020",
"R-MMU-71020"
],
"rhea":[
"20556",
"20555",
"20554",
"20553"
],
"sabiork":[
"2642"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01996"
]
}
},
{
"id":"MOBDtex",
"name":"Molybdate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mobd_e":-1.0,
"mobd_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"MOBDtex"
]
},
"annotation":{
"bigg.reaction":[
"MOBDtex"
],
"metanetx.reaction":[
"MNXR101690"
],
"rhea":[
"34909",
"34907",
"34910",
"34908"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08956"
]
}
},
{
"id":"MOCOS",
"name":"Molybdenum cofactor synthase",
"metabolites":{
"amp_c":1.0,
"cu2_c":1.0,
"h2o_c":1.0,
"h_c":-2.0,
"mobd_c":-1.0,
"moco_c":1.0,
"mptamp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1038 or Gmet_0336 or Gmet_1804",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MOCOS"
]
},
"annotation":{
"bigg.reaction":[
"MOCOS"
],
"metanetx.reaction":[
"MNXR138626"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOGDS",
"name":"Molybdopterin guanine dinucleotide synthase",
"metabolites":{
"gtp_c":-1.0,
"h_c":-1.0,
"moco_c":-1.0,
"mocogdp_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0300 or Gmet_1062",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MOGDS"
]
},
"annotation":{
"bigg.reaction":[
"MOGDS"
],
"metanetx.reaction":[
"MNXR138629"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOHMT",
"name":"3-methyl-2-oxobutanoate hydroxymethyltransferase",
"metabolites":{
"2dhp_c":1.0,
"3mob_c":-1.0,
"h2o_c":-1.0,
"mlthf_c":-1.0,
"thf_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1642",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MOHMT"
]
},
"annotation":{
"bigg.reaction":[
"MOHMT"
],
"ec-code":[
"2.1.2.11"
],
"kegg.reaction":[
"R01226"
],
"metanetx.reaction":[
"MNXR101702"
],
"rhea":[
"11824",
"11827",
"11825",
"11826"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOSDC",
"name":"2-methyl-3-oxosuccinate decarboxylation",
"metabolites":{
"2m3osuc_c":-1.0,
"2obut_c":1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"s_0001",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"MOSDC"
]
},
"annotation":{
"bigg.reaction":[
"MOSDC"
],
"ec-code":[
"4.1.1.3"
],
"metanetx.reaction":[
"MNXR101704"
],
"rhea":[
"25770",
"25769",
"25767",
"25768"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOTH1",
"name":"Maltooligosyltrehalose trehalohydrolase (maltosyltrehalose)",
"metabolites":{
"h2o_c":-1.0,
"malt_c":1.0,
"malttre_c":-1.0,
"tre_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3467",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MOTH1"
]
},
"annotation":{
"bigg.reaction":[
"MOTH1"
],
"metanetx.reaction":[
"MNXR101706"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MMM2",
"name":"Methylmalonyl-CoA mutase",
"metabolites":{
"mmcoa__R_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1574 and Gmet_3251) or (Gmet_2208 and Gmet_2209)",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"MMM2r"
]
},
"annotation":{
"bigg.reaction":[
"MMM2"
],
"biocyc":[
"META:METHYLMALONYL-COA-MUT-RXN"
],
"ec-code":[
"5.4.99.2"
],
"kegg.reaction":[
"R00833"
],
"metanetx.reaction":[
"MNXR101661"
],
"reactome.reaction":[
"R-HSA-71010",
"R-MMU-71010",
"R-XTR-71010",
"R-TGU-71010",
"R-RNO-71010",
"R-GGA-71010",
"R-CEL-71010",
"R-DDI-71010",
"R-SSC-71010",
"R-CFA-71010",
"R-BTA-71010",
"R-DRE-71010"
],
"rhea":[
"22891",
"22888",
"22890",
"22889"
],
"sabiork":[
"1174"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00602"
]
}
},
{
"id":"MNCYT",
"name":"Mn(IV) Reductase",
"metabolites":{
"mn2_e":1.0,
"mn4_e":-1.0,
"omcho_e":2.0,
"omchr_e":-2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0930",
"subsystem":"Metal Respiration",
"notes":{
"original_bigg_ids":[
"MNCYT"
]
},
"annotation":{
"bigg.reaction":[
"MNCYT"
],
"metanetx.reaction":[
"MNXR101672"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MNabc_1",
"name":"Manganese Mn2 transport via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"mn2_c":1.0,
"mn2_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0491 and Gmet_0493 and Gmet_0492",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"MNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MNabc_1"
],
"biocyc":[
"META:3.6.3.35-RXN"
],
"ec-code":[
"3.6.3.35"
],
"metanetx.reaction":[
"MNXR101680"
],
"rhea":[
"17365#1",
"17368#1",
"17366#1",
"17367#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05149"
]
}
},
{
"id":"MOTH2",
"name":"Maltooligosyltrehalose trehalohydrolase (maltotriosyltrehalose)",
"metabolites":{
"h2o_c":-1.0,
"malttr_c":1.0,
"malttrtre_c":-1.0,
"tre_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3467",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MOTH2"
]
},
"annotation":{
"bigg.reaction":[
"MOTH2"
],
"metanetx.reaction":[
"MNXR101707"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HMPK4",
"name":"Hydroxymethylpyrimidine kinase (GTP)",
"metabolites":{
"4ahmmp_c":-1.0,
"4ampm_c":1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2909",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"HMPK4"
]
},
"annotation":{
"bigg.reaction":[
"HMPK4"
],
"metanetx.reaction":[
"MNXR143167"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10620"
]
}
},
{
"id":"MOTH3",
"name":"Maltooligosyltrehalose trehalohydrolase (maltotetraosyltrehalose)",
"metabolites":{
"h2o_c":-1.0,
"maltttr_c":1.0,
"maltttrtre_c":-1.0,
"tre_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3467",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MOTH3"
]
},
"annotation":{
"bigg.reaction":[
"MOTH3"
],
"metanetx.reaction":[
"MNXR101708"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOTH4",
"name":"Maltooligosyltrehalose trehalohydrolase (maltopentaosyltrehalose)",
"metabolites":{
"h2o_c":-1.0,
"maltpt_c":1.0,
"maltpttre_c":-1.0,
"tre_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3467",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MOTH4"
]
},
"annotation":{
"bigg.reaction":[
"MOTH4"
],
"metanetx.reaction":[
"MNXR101709"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MNtex",
"name":"Manganese (Mn+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mn2_e":-1.0,
"mn2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"MNtex"
]
},
"annotation":{
"bigg.reaction":[
"MNtex"
],
"biocyc":[
"META:RXN0-16",
"META:TRANS-RXN0-487"
],
"metanetx.reaction":[
"MNXR101670"
],
"rhea":[
"28702",
"28699",
"28700",
"28701"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08952",
"rxn08947"
]
}
},
{
"id":"MOADSUx",
"name":"MoaD sulfuration (nadh, assumed)",
"metabolites":{
"amp_c":1.0,
"iscs_c":1.0,
"iscssh_c":-1.0,
"moadamp_c":-1.0,
"moadcosh_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1044 and Gmet_0992) or (Gmet_1044 and Gmet_0872)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MOADSUx"
]
},
"annotation":{
"bigg.reaction":[
"MOADSUx"
],
"metanetx.reaction":[
"MNXR101682"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOAT",
"name":"3-deoxy-D-manno-octulosonic acid transferase",
"metabolites":{
"ckdo_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"kdolipid4_c":1.0,
"lipidA_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2348",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"MOAT"
]
},
"annotation":{
"bigg.reaction":[
"MOAT"
],
"biocyc":[
"META:KDOTRANS-RXN"
],
"ec-code":[
"2.4.99.12"
],
"kegg.reaction":[
"R04658"
],
"metanetx.reaction":[
"MNXR101683"
],
"rhea":[
"28067",
"28068",
"28066",
"28069"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03182"
]
}
},
{
"id":"MOTS1",
"name":"Maltooligosyltrehalose synthase (maltotetraose)",
"metabolites":{
"malttre_c":1.0,
"maltttr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3468",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MOTS1"
]
},
"annotation":{
"bigg.reaction":[
"MOTS1"
],
"metanetx.reaction":[
"MNXR101711"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOTS2",
"name":"Maltooligosyltrehalose synthase (maltopentaose)",
"metabolites":{
"maltpt_c":-1.0,
"malttrtre_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3468",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MOTS2"
]
},
"annotation":{
"bigg.reaction":[
"MOTS2"
],
"metanetx.reaction":[
"MNXR101712"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOTS3",
"name":"Maltooligosyltrehalose synthase (maltohexaose)",
"metabolites":{
"malthx_c":-1.0,
"maltttrtre_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3468",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MOTS3"
]
},
"annotation":{
"bigg.reaction":[
"MOTS3"
],
"metanetx.reaction":[
"MNXR101713"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOTS4",
"name":"Maltooligosyltrehalose synthase (maltoheptaose)",
"metabolites":{
"malthp_c":-1.0,
"maltpttre_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3468",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MOTS4"
]
},
"annotation":{
"bigg.reaction":[
"MOTS4"
],
"metanetx.reaction":[
"MNXR101714"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOAT2",
"name":"3-deoxy-D-manno-octulosonic acid transferase",
"metabolites":{
"ckdo_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"kdo2lipid4_c":1.0,
"kdolipid4_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2348",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"MOAT2"
]
},
"annotation":{
"bigg.reaction":[
"MOAT2"
],
"biocyc":[
"META:KDOTRANS2-RXN"
],
"ec-code":[
"2.4.99.13"
],
"kegg.reaction":[
"R05074",
"R06285"
],
"metanetx.reaction":[
"MNXR101684"
],
"rhea":[
"28063",
"28062",
"28065",
"28064"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03439"
]
}
},
{
"id":"MOAT2N",
"name":"3-deoxy-D-manno-octulosonic acid transferase (glucosediaminyl)",
"metabolites":{
"ckdo_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"kdo2lipid4n_c":1.0,
"kdolipid4n_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2348",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"MOAT2N"
]
},
"annotation":{
"bigg.reaction":[
"MOAT2N"
],
"metanetx.reaction":[
"MNXR101685"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MPTAT",
"name":"Molybdopterin adenylyltransferase",
"metabolites":{
"atp_c":-1.0,
"h_c":-1.0,
"mpt_c":-1.0,
"mptamp_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1036",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MPTAT"
]
},
"annotation":{
"bigg.reaction":[
"MPTAT"
],
"biocyc":[
"META:RXN-8344"
],
"ec-code":[
"2.7.7.75"
],
"kegg.reaction":[
"R09726"
],
"metanetx.reaction":[
"MNXR101730"
],
"rhea":[
"31333",
"31334",
"31332",
"31331"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HMPSCD",
"name":"2-[hydroxy(phenyl)methyl]-succinyl-CoA dehydrogenase",
"metabolites":{
"h_c":1.0,
"hmpscoa_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"sbzcoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1530 and Gmet_1531",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"HMPSCD"
]
},
"annotation":{
"bigg.reaction":[
"HMPSCD"
],
"metanetx.reaction":[
"MNXR100668"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MPTG",
"name":"Murein polymerizing transglycosylase",
"metabolites":{
"h_c":2.0,
"murein5p5p_p":1.0,
"uaagmda_c":-2.0,
"udcpdp_c":2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0354 or Gmet_1671 or Gmet_0406",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MPTG"
]
},
"annotation":{
"bigg.reaction":[
"MPTG"
],
"metanetx.reaction":[
"MNXR143249"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MPTG2",
"name":"Murein polymerizing transglycosylase 2 (three linked units)",
"metabolites":{
"h_c":1.0,
"murein5p5p5p_p":1.0,
"murein5p5p_p":-1.0,
"uaagmda_c":-1.0,
"udcpdp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3403",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MPTG2"
]
},
"annotation":{
"bigg.reaction":[
"MPTG2"
],
"metanetx.reaction":[
"MNXR143250"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MPTS",
"name":"Molybdopterin synthase",
"metabolites":{
"cpmp_c":-1.0,
"cu2_c":-1.0,
"h_c":5.0,
"moadcoo_c":2.0,
"moadcosh_c":-2.0,
"mpt_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1044 and Gmet_0302) or (Gmet_1044 and Gmet_2094)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MPTS"
]
},
"annotation":{
"bigg.reaction":[
"MPTS"
],
"metanetx.reaction":[
"MNXR143253"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NH4t4pp",
"name":"Ammonium transport out via K+ antiport (periplasm)",
"metabolites":{
"k_c":-1.0,
"k_p":1.0,
"nh4_c":1.0,
"nh4_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0695 or Gmet_1738",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"NH4t4pp"
]
},
"annotation":{
"bigg.reaction":[
"NH4t4pp"
],
"metanetx.reaction":[
"MNXR101952"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10868"
]
}
},
{
"id":"MPTSS",
"name":"Molybdopterin synthase sulfurylase",
"metabolites":{
"atp_c":-1.0,
"h_c":-1.0,
"moadamp_c":1.0,
"moadcoo_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1043",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MPTSS"
]
},
"annotation":{
"bigg.reaction":[
"MPTSS"
],
"metanetx.reaction":[
"MNXR101736"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HOCCD",
"name":"6-hydroxycyclohex-1-ene-1-carbonyl CoA dehydrogenase",
"metabolites":{
"6hch1eccoa_c":-1.0,
"6occhcoa_c":1.0,
"h_c":5.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2151",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"HOCCD"
]
},
"annotation":{
"bigg.reaction":[
"HOCCD"
],
"biocyc":[
"META:HADTHAUERA-RXN"
],
"ec-code":[
"1.1.1.368"
],
"kegg.reaction":[
"R05581"
],
"metanetx.reaction":[
"MNXR100674"
],
"rhea":[
"18268",
"18267",
"18265",
"18266"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03863"
]
}
},
{
"id":"MSO3abcpp",
"name":"Methanesulfonate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"mso3_c":1.0,
"mso3_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0996 and Gmet_0997 and Gmet_0998) or (Gmet_1901 and Gmet_1899 and Gmet_1900)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"MSO3abcpp"
]
},
"annotation":{
"bigg.reaction":[
"MSO3abcpp"
],
"metanetx.reaction":[
"MNXR101741"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05621",
"rxn08959"
]
}
},
{
"id":"MSO3tex",
"name":"Methanesulfonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mso3_e":-1.0,
"mso3_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"MSO3tex"
]
},
"annotation":{
"bigg.reaction":[
"MSO3tex"
],
"metanetx.reaction":[
"MNXR101742"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08960"
]
}
},
{
"id":"NH4tex",
"name":"Ammonia transport via diffusion (extracellular to periplasm)",
"metabolites":{
"nh4_e":-1.0,
"nh4_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"NH4tex"
]
},
"annotation":{
"bigg.reaction":[
"NH4tex"
],
"biocyc":[
"META:TRANS-RXN0-206",
"META:RXN-9615",
"META:TRANS-RXN0-544"
],
"metanetx.reaction":[
"MNXR101950"
],
"reactome.reaction":[
"R-CEL-444416",
"R-SSC-444416",
"R-DDI-444416",
"R-MMU-444416",
"R-DRE-444416",
"R-GGA-444416",
"R-CFA-444416",
"R-HSA-444416",
"R-XTR-444416",
"R-BTA-444416",
"R-RNO-444416",
"R-TGU-444416",
"R-DME-444416"
],
"rhea":[
"28749",
"28748",
"28750",
"28747"
],
"sabiork":[
"11683"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13364",
"rxn09835",
"rxn05466",
"rxn08987",
"rxn08986",
"rxn09736"
]
}
},
{
"id":"NI2t4pp",
"name":"Nickel transport out via antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"k_c":1.0,
"k_p":-1.0,
"ni2_c":-1.0,
"ni2_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_3071) or ((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_3071)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"NI2t4pp"
]
},
"annotation":{
"bigg.reaction":[
"NI2t4pp"
],
"metanetx.reaction":[
"MNXR101957"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MTAP",
"name":"5  methylthioadenosine phosphorylase",
"metabolites":{
"5mdr1p_c":1.0,
"5mta_c":-1.0,
"ade_c":1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2684",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"MTAP"
]
},
"annotation":{
"bigg.reaction":[
"MTAP"
],
"biocyc":[
"META:5-METHYLTHIOADENOSINE-PHOSPHORYLASE-RXN"
],
"ec-code":[
"2.4.2.28"
],
"kegg.reaction":[
"R01402"
],
"metanetx.reaction":[
"MNXR101745"
],
"reactome.reaction":[
"R-DRE-1237160",
"R-SSC-1237160",
"R-BTA-1237160",
"R-XTR-1237160",
"R-DME-1237160",
"R-CEL-1237160",
"R-CFA-1237160",
"R-SCE-1237160",
"R-SPO-1237160",
"R-HSA-1237160",
"R-MMU-1237160",
"R-RNO-1237160",
"R-TGU-1237160",
"R-GGA-1237160"
],
"rhea":[
"11853",
"11855",
"11852",
"11854"
],
"sabiork":[
"1594"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01022"
]
}
},
{
"id":"MTHFC",
"name":"Methenyltetrahydrofolate cyclohydrolase",
"metabolites":{
"10fthf_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"methf_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0247 or Gmet_1162",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MTHFC"
]
},
"annotation":{
"bigg.reaction":[
"MTHFC"
],
"ec-code":[
"3.5.4.9",
"1.5.1.15"
],
"kegg.reaction":[
"R01655"
],
"metanetx.reaction":[
"MNXR101748"
],
"reactome.reaction":[
"R-DRE-6801462",
"R-SCE-6801462",
"R-OSA-6801462",
"R-SSC-6801462",
"R-ATH-6801462",
"R-MMU-6801462",
"R-RNO-6801462",
"R-CFA-6801462",
"R-DDI-6801462",
"R-GGA-6801462",
"R-HSA-6801462",
"R-TGU-6801462",
"R-BTA-6801462",
"R-DME-6801462",
"R-XTR-6801462"
],
"rhea":[
"23701",
"23700",
"23702",
"23703"
],
"sabiork":[
"74"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01211"
]
}
},
{
"id":"NI2tex",
"name":"Nickel transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ni2_e":-1.0,
"ni2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"NI2tex"
]
},
"annotation":{
"bigg.reaction":[
"NI2tex"
],
"biocyc":[
"META:TRANS-RXN-141B"
],
"metanetx.reaction":[
"MNXR101958"
],
"rhea":[
"29833",
"29831",
"29834",
"29832"
],
"sbo":"SBO:0000185"
}
},
{
"id":"HP5CD",
"name":"3-hydroxy-1-pyrroline-5-carboxylate dehydrogenase",
"metabolites":{
"1p3h5c_c":-1.0,
"4hglu_c":1.0,
"h2o_c":-2.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3512",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"HP5CD"
]
},
"annotation":{
"bigg.reaction":[
"HP5CD"
],
"ec-code":[
"1.5.1.12"
],
"metanetx.reaction":[
"MNXR100683"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03071"
]
}
},
{
"id":"NI2uabcpp",
"name":"Nickel transport via ABC system (uptake, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ni2_c":1.0,
"ni2_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2441 and Gmet_2439 and Gmet_2440",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"NI2uabcpp"
]
},
"annotation":{
"bigg.reaction":[
"NI2uabcpp"
],
"biocyc":[
"META:ABC-20-RXN",
"META:3.6.3.24-RXN"
],
"ec-code":[
"3.6.3.24"
],
"metanetx.reaction":[
"MNXR101959"
],
"rhea":[
"15557#1",
"15558#1",
"15560#1",
"15559#1"
],
"sbo":"SBO:0000185"
}
},
{
"id":"NIT1b",
"name":"Nitrogenase",
"metabolites":{
"adp_c":16.0,
"atp_c":-16.0,
"fdxo_42_c":4.0,
"fdxr_42_c":-4.0,
"h2_c":1.0,
"h2o_c":-16.0,
"h_c":6.0,
"n2_c":-1.0,
"nh4_c":2.0,
"pi_c":16.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0672 and Gmet_0673 and Gmet_0663 and Gmet_0669 and Gmet_0662 and Gmet_0664 and Gmet_0671",
"objective_coefficient":-0.113331226422373,
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NIT1b"
]
},
"annotation":{
"bigg.reaction":[
"NIT1b"
],
"metanetx.reaction":[
"MNXR101963"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MTHFD",
"name":"Methylenetetrahydrofolate dehydrogenase (NADP)",
"metabolites":{
"methf_c":1.0,
"mlthf_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0247 or Gmet_1162",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MTHFD"
]
},
"annotation":{
"bigg.reaction":[
"MTHFD"
],
"ec-code":[
"1.5.1.5"
],
"kegg.reaction":[
"R01220"
],
"metanetx.reaction":[
"MNXR101749"
],
"rhea":[
"22814",
"22813",
"22815",
"22812"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MTHFR",
"name":"5,10-methylenetetrahydrofolate reductase (FADH2)",
"metabolites":{
"5mthf_c":1.0,
"fad_c":1.0,
"fadh2_c":-1.0,
"h_c":-1.0,
"mlthf_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1160 or Gmet_0504",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MTHFR"
]
},
"annotation":{
"bigg.reaction":[
"MTHFR"
],
"ec-code":[
"1.7.99.5"
],
"metanetx.reaction":[
"MNXR101753"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MTHFR3",
"name":"5 10 methylenetetrahydrofolatereductase  NADPH ",
"metabolites":{
"5mthf_c":1.0,
"h_c":-2.0,
"mlthf_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0504 or Gmet_1160",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"MTHFR3"
]
},
"annotation":{
"bigg.reaction":[
"MTHFR3"
],
"ec-code":[
"1.5.1.20"
],
"kegg.reaction":[
"R01224"
],
"metanetx.reaction":[
"MNXR101752"
],
"rhea":[
"19817",
"19818",
"19820",
"19819"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NNAM",
"name":"Nicotinamidase",
"metabolites":{
"h2o_c":-1.0,
"nac_c":1.0,
"ncam_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2374",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"NNAM"
]
},
"annotation":{
"bigg.reaction":[
"NNAM"
],
"biocyc":[
"META:NICOTINAMID-RXN"
],
"ec-code":[
"3.5.1.19"
],
"kegg.reaction":[
"R01268"
],
"metanetx.reaction":[
"MNXR101977"
],
"rhea":[
"14545",
"14547",
"14546",
"14548"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00938"
]
}
},
{
"id":"HPPK2",
"name":"6-hydroxymethyl-dihydropterin pyrophosphokinase",
"metabolites":{
"6hmhpt_c":-1.0,
"6hmhptpp_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0495",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"HPPK2"
]
},
"annotation":{
"bigg.reaction":[
"HPPK2"
],
"biocyc":[
"META:H2PTERIDINEPYROPHOSPHOKIN-RXN"
],
"ec-code":[
"2.7.6.3"
],
"kegg.reaction":[
"R03503"
],
"metanetx.reaction":[
"MNXR100694"
],
"rhea":[
"11413",
"11412",
"11415",
"11414"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NNATr",
"name":"Nicotinate-nucleotide adenylyltransferase",
"metabolites":{
"atp_c":-1.0,
"dnad_c":1.0,
"h_c":-1.0,
"nicrnt_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3200",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"NNAT"
]
},
"annotation":{
"bigg.reaction":[
"NNATr"
],
"biocyc":[
"META:NICONUCADENYLYLTRAN-RXN"
],
"ec-code":[
"2.7.7.18",
"2.7.7.1"
],
"kegg.reaction":[
"R03005"
],
"metanetx.reaction":[
"MNXR101978"
],
"reactome.reaction":[
"R-MMU-197235",
"R-SCE-200474",
"R-BTA-200512",
"R-TGU-197235",
"R-TGU-200512",
"R-DDI-197235",
"R-HSA-200512",
"R-HSA-200474",
"R-ATH-197235",
"R-BTA-197235",
"R-HSA-197235",
"R-CEL-197235",
"R-ATH-200512",
"R-CFA-200512",
"R-RNO-197235",
"R-XTR-197235",
"R-DME-200512",
"R-XTR-200512",
"R-TGU-200474",
"R-MMU-200512",
"R-DDI-200512",
"R-SCE-200512",
"R-BTA-200474",
"R-RNO-200474",
"R-SCE-197235",
"R-OSA-200512",
"R-CFA-197235",
"R-ATH-200474",
"R-SSC-200512",
"R-SPO-197235",
"R-SPO-200474",
"R-GGA-200474",
"R-GGA-197235",
"R-SPO-200512",
"R-DME-200474",
"R-SSC-200474",
"R-OSA-197235",
"R-OSA-200474",
"R-RNO-200512",
"R-DRE-197235",
"R-GGA-200512",
"R-MMU-200474",
"R-CFA-200474",
"R-DRE-200474",
"R-DDI-200474",
"R-SSC-197235",
"R-DRE-200512"
],
"rhea":[
"22863",
"22861",
"22862",
"22860"
],
"sabiork":[
"2857"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02155"
]
}
},
{
"id":"NNDMBRT",
"name":"Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase",
"metabolites":{
"5prdmbz_c":1.0,
"dmbzid_c":-1.0,
"h_c":1.0,
"nac_c":1.0,
"nicrnt_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0467",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"NNDMBRT"
]
},
"annotation":{
"bigg.reaction":[
"NNDMBRT"
],
"biocyc":[
"META:DMBPPRIBOSYLTRANS-RXN"
],
"ec-code":[
"2.4.2.21"
],
"kegg.reaction":[
"R04148"
],
"metanetx.reaction":[
"MNXR101979"
],
"rhea":[
"11196",
"11197",
"11199",
"11198"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02897"
]
}
},
{
"id":"NNDPR",
"name":"Nicotinate-nucleotide diphosphorylase (carboxylating)",
"metabolites":{
"co2_c":1.0,
"h_c":-2.0,
"nicrnt_c":1.0,
"ppi_c":1.0,
"prpp_c":-1.0,
"quln_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1988",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"NNDPR"
]
},
"annotation":{
"bigg.reaction":[
"NNDPR"
],
"biocyc":[
"META:QUINOPRIBOTRANS-RXN"
],
"ec-code":[
"2.4.2.19"
],
"kegg.reaction":[
"R03348"
],
"metanetx.reaction":[
"MNXR101980"
],
"reactome.reaction":[
"R-CFA-197268",
"R-HSA-197268",
"R-SSC-197268",
"R-RNO-197268",
"R-XTR-197268",
"R-MMU-197268",
"R-ATH-197268",
"R-OSA-197268",
"R-SCE-197268",
"R-BTA-197268",
"R-DDI-197268",
"R-TGU-197268"
],
"rhea":[
"12735",
"12733",
"12734",
"12736"
],
"sabiork":[
"3155"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02402"
]
}
},
{
"id":"NO2tex",
"name":"Nitrite transport via diffusion (extracellular to periplasm)",
"metabolites":{
"no2_e":-1.0,
"no2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"NO2tex"
]
},
"annotation":{
"bigg.reaction":[
"NO2tex"
],
"biocyc":[
"META:TRANS-RXN-137"
],
"metanetx.reaction":[
"MNXR101912"
],
"rhea":[
"28983",
"28986",
"28984",
"28985"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10823",
"rxn08999"
]
}
},
{
"id":"MTI",
"name":"Maltose trehalose isomerase",
"metabolites":{
"malt_c":1.0,
"tre_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3469",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MTI"
]
},
"annotation":{
"bigg.reaction":[
"MTI"
],
"biocyc":[
"META:5.4.99.16-RXN"
],
"ec-code":[
"5.4.99.16"
],
"kegg.reaction":[
"R06218",
"R01557"
],
"metanetx.reaction":[
"MNXR101757"
],
"reactome.reaction":[
"R-MTU-868709"
],
"rhea":[
"15145",
"15147",
"15148",
"15146"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01134"
]
}
},
{
"id":"MTRI",
"name":"5-methylthioribose-1-phosphate isomerase",
"metabolites":{
"5mdr1p_c":-1.0,
"5mdru1p_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0072",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"MTRIi"
]
},
"annotation":{
"bigg.reaction":[
"MTRI"
],
"biocyc":[
"META:5.3.1.23-RXN"
],
"ec-code":[
"5.3.1.23"
],
"kegg.reaction":[
"R04420"
],
"metanetx.reaction":[
"MNXR101759"
],
"reactome.reaction":[
"R-BTA-1299507",
"R-RNO-1237096",
"R-GGA-1299507",
"R-DME-1299507",
"R-CEL-1237096",
"R-MMU-1237096",
"R-SSC-1299507",
"R-CFA-1237096",
"R-DDI-1299507",
"R-CFA-1299507",
"R-DRE-1237096",
"R-SPO-1237096",
"R-RNO-1299507",
"R-SPO-1299507",
"R-XTR-1237096",
"R-ATH-1299507",
"R-OSA-1237096",
"R-DME-1237096",
"R-SCE-1237096",
"R-HSA-1237096",
"R-DRE-1299507",
"R-GGA-1237096",
"R-SCE-1299507",
"R-CEL-1299507",
"R-DDI-1237096",
"R-OSA-1299507",
"R-MMU-1299507",
"R-HSA-1299507",
"R-SSC-1237096",
"R-XTR-1299507",
"R-BTA-1237096",
"R-ATH-1237096"
],
"rhea":[
"19991",
"19992",
"19990",
"19989"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03057"
]
}
},
{
"id":"N2OR",
"name":"Nitrous oxide reductase (nadh)",
"metabolites":{
"h2o_c":1.0,
"h_c":-1.0,
"n2_c":1.0,
"n2o_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2834",
"objective_coefficient":-0.00395341487519907,
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"N2OR"
]
},
"annotation":{
"bigg.reaction":[
"N2OR"
],
"ec-code":[
"1.7.99.6"
],
"metanetx.reaction":[
"MNXR101796"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11937"
]
}
},
{
"id":"N2tex",
"name":"Nitrogen exchange, diffusion (extra-organism to periplasm)",
"metabolites":{
"n2_e":-1.0,
"n2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"N2tex"
]
},
"annotation":{
"bigg.reaction":[
"N2tex"
],
"metanetx.reaction":[
"MNXR101799"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10577"
]
}
},
{
"id":"NO3R2pp",
"name":"Nitrate reductase (Menaquinol-8) (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h_c":-2.0,
"h_p":2.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"no2_c":1.0,
"no3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0328 and Gmet_0329 and Gmet_0330 and Gmet_0332 and Gmet_0331) or (Gmet_1019 and Gmet_1020 and Gmet_1021 and Gmet_1022 and Gmet_0331)",
"objective_coefficient":-0.00593012231279867,
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NO3R2pp"
]
},
"annotation":{
"bigg.reaction":[
"NO3R2pp"
],
"metanetx.reaction":[
"MNXR101988"
],
"rhea":[
"29141#1",
"29142#1",
"29140#1",
"29139#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09003",
"rxn10121"
]
}
},
{
"id":"NO3R3pp",
"name":"Nitrate reductase (Cytochrome c) periplasmic",
"metabolites":{
"ficytC_c":2.0,
"focytC_c":-2.0,
"h2o_c":1.0,
"h_c":-4.0,
"h_p":2.0,
"no2_c":1.0,
"no3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0328 and Gmet_0329 and Gmet_0330 and Gmet_0332 and Gmet_0331) or (Gmet_1019 and Gmet_1020 and Gmet_1021 and Gmet_1022 and Gmet_0331)",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NO3R3pp"
]
},
"annotation":{
"bigg.reaction":[
"NO3R3pp"
],
"metanetx.reaction":[
"MNXR138656"
],
"sbo":"SBO:0000185"
}
},
{
"id":"N2trpp",
"name":"Nitrogen exchange, diffusion (periplasm)",
"metabolites":{
"n2_c":1.0,
"n2_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"N2trpp"
]
},
"annotation":{
"bigg.reaction":[
"N2trpp"
],
"metanetx.reaction":[
"MNXR101799"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10577"
]
}
},
{
"id":"NO3t2pp",
"name":"Nitrate transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"no3_c":1.0,
"no3_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0333",
"objective_coefficient":-0.00790682975039829,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"NO3t2pp"
]
},
"annotation":{
"bigg.reaction":[
"NO3t2pp"
],
"metanetx.reaction":[
"MNXR101993"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05627"
]
}
},
{
"id":"NAD_H2",
"name":"NAD-linked hydrogenase",
"metabolites":{
"h2_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"(Gmet_1109 and Gmet_1110 and Gmet_1111 and Gmet_1112 and Gmet_1113) or (Gmet_3319 and Gmet_3320 and Gmet_3321 and Gmet_3323)",
"objective_coefficient":-0.00395341487519907,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"NAD_H2"
]
},
"annotation":{
"bigg.reaction":[
"NAD_H2"
],
"biocyc":[
"META:HYDROGEN-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.12.1.5",
"1.12.1.2"
],
"kegg.reaction":[
"R00700"
],
"metanetx.reaction":[
"MNXR101899"
],
"rhea":[
"24639",
"24637",
"24638",
"24636"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05887"
]
}
},
{
"id":"HSDy",
"name":"Homoserine dehydrogenase (NADPH)",
"metabolites":{
"aspsa_c":1.0,
"h_c":1.0,
"hom__L_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1629",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"HSDy"
]
},
"annotation":{
"bigg.reaction":[
"HSDy"
],
"ec-code":[
"1.1.1.3"
],
"kegg.reaction":[
"R01775"
],
"metanetx.reaction":[
"MNXR100734"
],
"rhea":[
"15761",
"15764",
"15763",
"15762"
],
"sabiork":[
"1868"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01302"
]
}
},
{
"id":"NADFADOR",
"name":"NAD:FAD oxidoreductase",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fdxo_42_c":1.0,
"fdxr_42_c":-1.0,
"nad_c":-2.0,
"nadh_c":2.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0683 and Gmet_0684) or (Gmet_2066 and Gmet_2067) or (Gmet_2257 and Gmet_2258) or (Gmet_2152 and Gmet_2153) or (Gmet_1525 and Gmet_1526) or (Gmet_2262 and Gmet_2263) or (Gmet_1712 and Gmet_1713) or (Gmet_2265 and Gmet_2266) or (Gmet_3300 and Gmet_3301)",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"NADFADOR"
]
},
"annotation":{
"bigg.reaction":[
"NADFADOR"
],
"metanetx.reaction":[
"MNXR101862"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NADH10",
"name":"NADH dehydrogenase (menaquinone-8 & 0 protons)",
"metabolites":{
"h_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0771",
"objective_coefficient":-0.00593012231279855,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"NADH10"
]
},
"annotation":{
"bigg.reaction":[
"NADH10"
],
"metanetx.reaction":[
"MNXR101863"
],
"rhea":[
"29243",
"29246",
"29244",
"29245"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08971"
]
}
},
{
"id":"NO3t7pp",
"name":"Nitrate transport in via nitrite antiport (periplasm)",
"metabolites":{
"no2_c":-1.0,
"no2_p":1.0,
"no3_c":1.0,
"no3_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0334",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"NO3t7pp"
]
},
"annotation":{
"bigg.reaction":[
"NO3t7pp"
],
"biocyc":[
"META:TRANS-RXN0-239"
],
"metanetx.reaction":[
"MNXR101995"
],
"rhea":[
"28746",
"28743",
"28744",
"28745"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09004",
"rxn10177"
]
}
},
{
"id":"NO3tex",
"name":"Nitrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"no3_e":-1.0,
"no3_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"NO3tex"
]
},
"annotation":{
"bigg.reaction":[
"NO3tex"
],
"metanetx.reaction":[
"MNXR101992"
],
"rhea":[
"34924",
"34926",
"34923",
"34925"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09005",
"rxn10935"
]
}
},
{
"id":"NORRDX",
"name":"Nitric oxide reductase (rubredoxin)",
"metabolites":{
"h2o_c":1.0,
"h_c":-2.0,
"n2o_c":1.0,
"no_c":-2.0,
"rdxo_c":2.0,
"rdxr_c":-2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_3171 and Gmet_3243) or (Gmet_3241 and Gmet_3243)",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NORRDX"
]
},
"annotation":{
"bigg.reaction":[
"NORRDX"
],
"metanetx.reaction":[
"MNXR102003"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NADH17pp",
"name":"NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm)",
"metabolites":{
"h_c":-4.0,
"h_p":3.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_3342 and Gmet_3343 and Gmet_3344 and Gmet_3345 and Gmet_3346 and Gmet_3347 and Gmet_3348 and Gmet_3349 and Gmet_3350 and Gmet_3351 and Gmet_3352 and Gmet_3353 and Gmet_3354 and Gmet_3355) or (Gmet_0152 and Gmet_0153 and Gmet_0154 and Gmet_0157 and Gmet_0159 and Gmet_0161 and Gmet_0163 and Gmet_0165 and Gmet_0167 and Gmet_0168 and Gmet_0171 and Gmet_0172)",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"NADH17pp"
]
},
"annotation":{
"bigg.reaction":[
"NADH17pp"
],
"ec-code":[
"1.6.5.3"
],
"metanetx.reaction":[
"MNXR101865"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08973"
]
}
},
{
"id":"NADK",
"name":"NAD kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0941",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"NADK"
]
},
"annotation":{
"bigg.reaction":[
"NADK"
],
"biocyc":[
"META:NAD-KIN-RXN"
],
"ec-code":[
"2.7.1.23"
],
"kegg.reaction":[
"R00104"
],
"metanetx.reaction":[
"MNXR101882"
],
"reactome.reaction":[
"R-DDI-197198",
"R-OSA-197198",
"R-TGU-197198",
"R-XTR-197198",
"R-SCE-197198",
"R-SPO-197198",
"R-DRE-197198",
"R-GGA-197198",
"R-ATH-197198",
"R-CFA-197198",
"R-DME-197198",
"R-MMU-197198",
"R-HSA-197198",
"R-RNO-197198",
"R-BTA-197198"
],
"rhea":[
"18631",
"18632",
"18629",
"18630"
],
"sabiork":[
"47"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00077"
]
}
},
{
"id":"HSERTA",
"name":"Homoserine O trans acetylase",
"metabolites":{
"accoa_c":-1.0,
"achms_c":1.0,
"coa_c":1.0,
"hom__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2783",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"HSERTA"
]
},
"annotation":{
"bigg.reaction":[
"HSERTA"
],
"biocyc":[
"META:HOMOSERINE-O-ACETYLTRANSFERASE-RXN"
],
"ec-code":[
"2.3.1.31"
],
"kegg.reaction":[
"R01776"
],
"metanetx.reaction":[
"MNXR100736"
],
"rhea":[
"13701",
"13703",
"13704",
"13702"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01303"
]
}
},
{
"id":"NADPC",
"name":"Nicotinamide adenine dinucleotide phosphate cyclase",
"metabolites":{
"campp_c":1.0,
"nadp_c":-1.0,
"nmn_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0945 or Gmet_1989",
"objective_coefficient":-0.146935252861564,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NADPC"
]
},
"annotation":{
"bigg.reaction":[
"NADPC"
],
"metanetx.reaction":[
"MNXR101889"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NADPHQR3",
"name":"NADPH Quinone Reductase (Menaquinone-8)",
"metabolites":{
"h_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_3022 and Gmet_3023) or Gmet_0771",
"objective_coefficient":-0.00593012231279855,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"NADPHQR3"
]
},
"annotation":{
"bigg.reaction":[
"NADPHQR3"
],
"metanetx.reaction":[
"MNXR101892"
],
"rhea":[
"29116",
"29115",
"29117",
"29118"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08978"
]
}
},
{
"id":"NORZpp",
"name":"Nitric Oxide reductase (cytochrome b) periplasmic",
"metabolites":{
"h2o_p":1.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"n2o_p":1.0,
"no_p":-2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3493",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NORZpp"
]
},
"annotation":{
"bigg.reaction":[
"NORZpp"
],
"metanetx.reaction":[
"MNXR102004"
],
"sbo":"SBO:0000185"
}
},
{
"id":"NPPDO",
"name":"2-nitropropane dioxygenase",
"metabolites":{
"acetone_c":2.0,
"h_c":2.0,
"n2ppn_c":-2.0,
"no2_c":2.0,
"o2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1293",
"objective_coefficient":-0.0276739041263934,
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NPPDO"
]
},
"annotation":{
"bigg.reaction":[
"NPPDO"
],
"ec-code":[
"1.13.11.32",
"1.13.12.16"
],
"metanetx.reaction":[
"MNXR102013"
],
"sabiork":[
"617"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00019",
"rxn12295"
]
}
},
{
"id":"NTPP1",
"name":"Nucleoside triphosphate pyrophosphorylase (dgtp)",
"metabolites":{
"dgmp_c":1.0,
"dgtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP1"
]
},
"annotation":{
"bigg.reaction":[
"NTPP1"
],
"biocyc":[
"META:RXN0-385"
],
"ec-code":[
"3.6.1.-",
"3.6.1.19",
"3.6.1.9"
],
"kegg.reaction":[
"R01855"
],
"metanetx.reaction":[
"MNXR102049"
],
"rhea":[
"28364",
"28363",
"28362",
"28365"
],
"sabiork":[
"302"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01351"
]
}
},
{
"id":"NTPP10",
"name":"Nucleoside triphosphate pyrophosphorylase (ditp)",
"metabolites":{
"dimp_c":1.0,
"ditp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1875",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP10"
]
},
"annotation":{
"bigg.reaction":[
"NTPP10"
],
"biocyc":[
"META:RXN0-1602"
],
"ec-code":[
"3.6.1.66",
"3.6.1.-"
],
"kegg.reaction":[
"R03531"
],
"metanetx.reaction":[
"MNXR102050"
],
"reactome.reaction":[
"R-SPO-2509838",
"R-MMU-2509838",
"R-BTA-2509838",
"R-ATH-2509838",
"R-HSA-2509838",
"R-OSA-2509838",
"R-RNO-2509838",
"R-SSC-2509838",
"R-SCE-2509838",
"R-DRE-2509838",
"R-DDI-2509838",
"R-GGA-2509838",
"R-PFA-2509838",
"R-DME-2509838",
"R-CEL-2509838",
"R-CFA-2509838",
"R-TGU-2509838"
],
"rhea":[
"28343",
"28342",
"28344",
"28345"
],
"sabiork":[
"9408"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02518"
]
}
},
{
"id":"NTPP11",
"name":"Nucleoside triphosphate pyrophosphorylase (xtp)",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0,
"xmp_c":1.0,
"xtp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1875",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP11"
]
},
"annotation":{
"bigg.reaction":[
"NTPP11"
],
"biocyc":[
"META:RXN0-1603"
],
"ec-code":[
"3.6.1.66",
"3.6.1.-"
],
"kegg.reaction":[
"R02720"
],
"metanetx.reaction":[
"MNXR102051"
],
"reactome.reaction":[
"R-BTA-2509831",
"R-CFA-2509831",
"R-SPO-2509831",
"R-PFA-2509831",
"R-RNO-2509831",
"R-SSC-2509831",
"R-DRE-2509831",
"R-MMU-2509831",
"R-OSA-2509831",
"R-GGA-2509831",
"R-SCE-2509831",
"R-HSA-2509831",
"R-CEL-2509831",
"R-TGU-2509831",
"R-DME-2509831",
"R-ATH-2509831",
"R-DDI-2509831"
],
"rhea":[
"28613",
"28610",
"28612",
"28611"
],
"sabiork":[
"357"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01962"
]
}
},
{
"id":"NADS1",
"name":"NAD synthase (nh3)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"dnad_c":-1.0,
"h_c":1.0,
"nad_c":1.0,
"nh4_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2862 and Gmet_2863",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"NADS1"
]
},
"annotation":{
"bigg.reaction":[
"NADS1"
],
"biocyc":[
"META:NAD-SYNTH-NH3-RXN"
],
"ec-code":[
"6.3.5.1",
"6.3.1.5"
],
"kegg.reaction":[
"R00189"
],
"metanetx.reaction":[
"MNXR101897"
],
"rhea":[
"21188",
"21190",
"21191",
"21189"
],
"sabiork":[
"13688"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00138"
]
}
},
{
"id":"NAMNPP",
"name":"Nicotinic acid mononucleotide pyrophosphorylase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"nac_c":-1.0,
"nicrnt_c":1.0,
"pi_c":1.0,
"ppi_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2373",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"NAMNPP"
]
},
"annotation":{
"bigg.reaction":[
"NAMNPP"
],
"biocyc":[
"META:NICOTINATEPRIBOSYLTRANS-RXN"
],
"ec-code":[
"6.3.4.21"
],
"kegg.reaction":[
"R01724"
],
"metanetx.reaction":[
"MNXR101909"
],
"rhea":[
"36164",
"36163",
"36166",
"36165"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08981"
]
}
},
{
"id":"NAt3_2pp",
"name":"Sodium proton antiporter (H:NA is 2) (periplasm)",
"metabolites":{
"h_c":2.0,
"h_p":-2.0,
"na1_c":-1.0,
"na1_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1089",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"NAt3_2pp"
]
},
"annotation":{
"bigg.reaction":[
"NAt3_2pp"
],
"biocyc":[
"META:TRANS-RXN-129"
],
"metanetx.reaction":[
"MNXR101915"
],
"rhea":[
"29252",
"29251",
"29254",
"29253"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10178",
"rxn08983"
]
}
},
{
"id":"NAtex",
"name":"Sodium transport via diffusion (extracellular to periplasm)",
"metabolites":{
"na1_e":-1.0,
"na1_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"NAtex"
]
},
"annotation":{
"bigg.reaction":[
"NAtex"
],
"biocyc":[
"META:TRANS-RXN-189"
],
"metanetx.reaction":[
"MNXR101804"
],
"reactome.reaction":[
"R-TGU-2671885",
"R-MMU-3295580",
"R-GGA-5576895",
"R-GGA-2672334",
"R-BTA-2672334",
"R-DRE-2671885",
"R-MMU-2730664",
"R-BTA-3295580",
"R-BTA-2730664",
"R-CFA-3295580",
"R-XTR-2672334",
"R-RNO-2671885",
"R-HSA-2671885",
"R-RNO-2730664",
"R-SSC-2671885",
"R-HSA-3295580",
"R-SSC-2672334",
"R-TGU-2672334",
"R-DRE-5576895",
"R-CEL-2730664",
"R-HSA-5576895",
"R-MMU-2672334",
"R-BTA-5576895",
"R-TGU-2730664",
"R-CFA-2672334",
"R-HSA-2730664",
"R-CFA-5576895",
"R-XTR-2671885",
"R-XTR-5576895",
"R-CFA-2730664",
"R-DME-2730664",
"R-XTR-3295580",
"R-GGA-3295580",
"R-BTA-2671885",
"R-DRE-3295580",
"R-MMU-2671885",
"R-SSC-3295580",
"R-CEL-3295580",
"R-GGA-2671885",
"R-GGA-2730664",
"R-HSA-2672334",
"R-SSC-5576895",
"R-CEL-2671885",
"R-DME-3295580",
"R-RNO-2672334",
"R-RNO-3295580",
"R-MMU-5576895",
"R-RNO-5576895",
"R-TGU-3295580",
"R-XTR-2730664",
"R-CFA-2671885"
],
"rhea":[
"34963",
"34966",
"34965",
"34964"
],
"sabiork":[
"12962"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08985",
"rxn10899"
]
}
},
{
"id":"NDPK1",
"name":"Nucleoside-diphosphate kinase (ATP:GDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gdp_c":-1.0,
"gtp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2686",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NDPK1"
]
},
"annotation":{
"bigg.reaction":[
"NDPK1"
],
"biocyc":[
"META:GDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R00330"
],
"metanetx.reaction":[
"MNXR96119"
],
"rhea":[
"27689",
"27686",
"27688",
"27687"
],
"sabiork":[
"138"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00237"
]
}
},
{
"id":"NTPP2",
"name":"Nucleoside triphosphate pyrophosphorylase (gtp)",
"metabolites":{
"gmp_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP2"
]
},
"annotation":{
"bigg.reaction":[
"NTPP2"
],
"biocyc":[
"META:RXN-14140"
],
"ec-code":[
"3.6.1.8",
"3.6.1.-",
"3.6.1.9"
],
"kegg.reaction":[
"R00426"
],
"metanetx.reaction":[
"MNXR102052"
],
"rhea":[
"29391",
"29392",
"29393",
"29394"
],
"sabiork":[
"301"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00301"
]
}
},
{
"id":"NTPP3",
"name":"Nucleoside triphosphate pyrophosphorylase (dctp)",
"metabolites":{
"dcmp_c":1.0,
"dctp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP3"
]
},
"annotation":{
"bigg.reaction":[
"NTPP3"
],
"biocyc":[
"META:DCTP-PYROPHOSPHATASE-RXN"
],
"ec-code":[
"3.6.1.9",
"3.6.1.12",
"3.6.1.65"
],
"kegg.reaction":[
"R01668"
],
"metanetx.reaction":[
"MNXR97203"
],
"rhea":[
"22637",
"22636",
"22639",
"22638"
],
"sabiork":[
"483"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01222"
]
}
},
{
"id":"NTPP4",
"name":"Nucleoside triphosphate pyrophosphorylase (ctp)",
"metabolites":{
"cmp_c":1.0,
"ctp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"objective_coefficient":-0.00658902479199841,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP4"
]
},
"annotation":{
"bigg.reaction":[
"NTPP4"
],
"biocyc":[
"META:RXN0-383"
],
"ec-code":[
"3.6.1.8",
"3.6.1.9",
"3.6.1.65"
],
"kegg.reaction":[
"R00515"
],
"metanetx.reaction":[
"MNXR102053"
],
"rhea":[
"27765",
"27763",
"27764",
"27762"
],
"sabiork":[
"454"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00367"
]
}
},
{
"id":"NDPK2",
"name":"Nucleoside-diphosphate kinase (ATP:UDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"udp_c":-1.0,
"utp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2686",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NDPK2"
]
},
"annotation":{
"bigg.reaction":[
"NDPK2"
],
"biocyc":[
"META:UDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R00156"
],
"metanetx.reaction":[
"MNXR101935"
],
"rhea":[
"25101",
"25098",
"25100",
"25099"
],
"sabiork":[
"199"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00117"
]
}
},
{
"id":"HSTPT",
"name":"Histidinol-phosphate transaminase",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"hisp_c":1.0,
"imacp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0385",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"HSTPT"
]
},
"annotation":{
"bigg.reaction":[
"HSTPT"
],
"biocyc":[
"META:HISTAMINOTRANS-RXN"
],
"ec-code":[
"2.6.1.9"
],
"kegg.reaction":[
"R03243"
],
"metanetx.reaction":[
"MNXR95852"
],
"rhea":[
"23747",
"23745",
"23744",
"23746"
],
"sabiork":[
"3064"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02320"
]
}
},
{
"id":"NDPK3",
"name":"Nucleoside-diphosphate kinase (ATP:CDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cdp_c":-1.0,
"ctp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2686",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NDPK3"
]
},
"annotation":{
"bigg.reaction":[
"NDPK3"
],
"biocyc":[
"META:CDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R00570"
],
"metanetx.reaction":[
"MNXR101936"
],
"rhea":[
"25240",
"25239",
"25237",
"25238"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00409"
]
}
},
{
"id":"NDPK4",
"name":"Nucleoside-diphosphate kinase (ATP:dTDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dtdp_c":-1.0,
"dttp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2686",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NDPK4"
]
},
"annotation":{
"bigg.reaction":[
"NDPK4"
],
"biocyc":[
"META:DTDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R02093"
],
"metanetx.reaction":[
"MNXR101937"
],
"rhea":[
"27682",
"27684",
"27683",
"27685"
],
"sabiork":[
"423"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01512"
]
}
},
{
"id":"NTPP5",
"name":"Nucleoside triphosphate pyrophosphorylase (datp)",
"metabolites":{
"damp_c":1.0,
"datp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP5"
]
},
"annotation":{
"bigg.reaction":[
"NTPP5"
],
"biocyc":[
"META:RXN0-384"
],
"ec-code":[
"3.6.1.19",
"3.6.1.9"
],
"metanetx.reaction":[
"MNXR97173"
],
"rhea":[
"28336",
"28337",
"28335",
"28334"
],
"sabiork":[
"10433"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09013"
]
}
},
{
"id":"NTPP6",
"name":"Nucleoside triphosphate pyrophosphorylase (atp)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP6"
]
},
"annotation":{
"bigg.reaction":[
"NTPP6"
],
"biocyc":[
"META:ATP-PYROPHOSPHATASE-RXN"
],
"ec-code":[
"3.6.1.8",
"3.6.1.9"
],
"kegg.reaction":[
"R00087"
],
"metanetx.reaction":[
"MNXR102054"
],
"rhea":[
"14248",
"14247",
"14245",
"14246"
],
"sabiork":[
"245"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05822",
"rxn00063"
]
}
},
{
"id":"NTPP7",
"name":"Nucleoside triphosphate pyrophosphorylase (dttp)",
"metabolites":{
"dtmp_c":1.0,
"dttp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"objective_coefficient":-0.0065890247919984,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP7"
]
},
"annotation":{
"bigg.reaction":[
"NTPP7"
],
"biocyc":[
"META:RXN0-5107"
],
"ec-code":[
"3.6.1.19",
"3.6.1.9"
],
"kegg.reaction":[
"R11323"
],
"metanetx.reaction":[
"MNXR97809"
],
"rhea":[
"28537",
"28534",
"28536",
"28535"
],
"sabiork":[
"10421"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09014"
]
}
},
{
"id":"NTPP8",
"name":"Nucleoside triphosphate pyrophosphorylase (utp)",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0,
"ump_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"objective_coefficient":-0.00658902479199845,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPP8"
]
},
"annotation":{
"bigg.reaction":[
"NTPP8"
],
"biocyc":[
"META:RXN-14139"
],
"ec-code":[
"3.6.1.8",
"3.6.1.9"
],
"kegg.reaction":[
"R00662"
],
"metanetx.reaction":[
"MNXR102055"
],
"rhea":[
"29397",
"29398",
"29395",
"29396"
],
"sabiork":[
"202"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00463"
]
}
},
{
"id":"NDPK5",
"name":"Nucleoside-diphosphate kinase (ATP:dGDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dgdp_c":-1.0,
"dgtp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2686",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NDPK5"
]
},
"annotation":{
"bigg.reaction":[
"NDPK5"
],
"biocyc":[
"META:DGDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R01857"
],
"metanetx.reaction":[
"MNXR96118"
],
"rhea":[
"27692",
"27690",
"27691",
"27693"
],
"sabiork":[
"183"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01353"
]
}
},
{
"id":"NDPK6",
"name":"Nucleoside-diphosphate kinase (ATP:dUDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dudp_c":-1.0,
"dutp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2686",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NDPK6"
]
},
"annotation":{
"bigg.reaction":[
"NDPK6"
],
"biocyc":[
"META:DUDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R02331"
],
"metanetx.reaction":[
"MNXR101938"
],
"rhea":[
"28584",
"28583",
"28582",
"28585"
],
"sabiork":[
"421"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01678"
]
}
},
{
"id":"HVCD",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-hydroxyacyl-CoA dehydrogenase (3-oxovaleryl-CoA))",
"metabolites":{
"3hptcoa_c":1.0,
"3optcoa_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2203 or Gmet_1717 or Gmet_2269 or Gmet_2072",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HVCD"
]
},
"annotation":{
"bigg.reaction":[
"HVCD"
],
"metanetx.reaction":[
"MNXR100745"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NDPK7",
"name":"Nucleoside-diphosphate kinase (ATP:dCDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dcdp_c":-1.0,
"dctp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2686",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NDPK7"
]
},
"annotation":{
"bigg.reaction":[
"NDPK7"
],
"biocyc":[
"META:DCDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R02326"
],
"metanetx.reaction":[
"MNXR101939"
],
"rhea":[
"27678",
"27681",
"27680",
"27679"
],
"sabiork":[
"422"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01673"
]
}
},
{
"id":"NDPK8",
"name":"Nucleoside-diphosphate kinase (ATP:dADP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dadp_c":-1.0,
"datp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2686",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NDPK8"
]
},
"annotation":{
"bigg.reaction":[
"NDPK8"
],
"biocyc":[
"META:DADPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R01137"
],
"metanetx.reaction":[
"MNXR101940"
],
"rhea":[
"27675",
"27674",
"27677",
"27676"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00839"
]
}
},
{
"id":"NTPTP1",
"name":"Nucleoside triphosphate tripolyhydrolase",
"metabolites":{
"dgsn_c":1.0,
"dgtp_c":-1.0,
"h2o_c":-1.0,
"pppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1762",
"objective_coefficient":-0.159783851205962,
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"NTPTP1"
]
},
"annotation":{
"bigg.reaction":[
"NTPTP1"
],
"biocyc":[
"META:DGTPTRIPHYDRO-RXN"
],
"ec-code":[
"3.1.5.1"
],
"kegg.reaction":[
"R01856"
],
"metanetx.reaction":[
"MNXR102057"
],
"rhea":[
"15196",
"15195",
"15193",
"15194"
],
"sabiork":[
"232"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01352"
]
}
},
{
"id":"NTRIR4pp",
"name":"Nitrite Reductase (Menaquinole-8, periplasm)",
"metabolites":{
"h2o_p":2.0,
"h_p":-2.0,
"mql8_c":-3.0,
"mqn8_c":3.0,
"nh4_p":1.0,
"no2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0294 and Gmet_0295) or (Gmet_0296 and Gmet_0295)",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NTRIR4pp"
]
},
"annotation":{
"bigg.reaction":[
"NTRIR4pp"
],
"metanetx.reaction":[
"MNXR102065"
],
"rhea":[
"29164",
"29166",
"29165",
"29163"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09019"
]
}
},
{
"id":"NTRIRfcpp",
"name":"Nitrite reductase (cytochrome) periplasmic",
"metabolites":{
"h2o_p":2.0,
"h_p":-8.0,
"nh4_p":1.0,
"no2_p":-1.0,
"ppco_p":6.0,
"ppcr_p":-6.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0294 or Gmet_0296",
"objective_coefficient":-0.00593012231279877,
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NTRIRfcpp"
]
},
"annotation":{
"bigg.reaction":[
"NTRIRfcpp"
],
"metanetx.reaction":[
"MNXR102067"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HXANt2pp",
"name":"Hypoxanthine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"hxan_c":1.0,
"hxan_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2715",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"HXANt2pp"
]
},
"annotation":{
"bigg.reaction":[
"HXANt2pp"
],
"metanetx.reaction":[
"MNXR100748"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05201"
]
}
},
{
"id":"OBDHc",
"name":"2-Oxobutanoate dehydrogenase, cytosolic",
"metabolites":{
"2obut_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"ppcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2509 and Gmet_2510 and Gmet_2511 and Gmet_2764) or (Gmet_2509 and Gmet_2510 and Gmet_2511 and Gmet_1896)",
"subsystem":"Valine, leucine and isoleucine degradation",
"notes":{
"original_bigg_ids":[
"OBDHc"
]
},
"annotation":{
"bigg.reaction":[
"OBDHc"
],
"biocyc":[
"META:RXN-7790"
],
"metanetx.reaction":[
"MNXR102133"
],
"rhea":[
"33226",
"33225",
"33223",
"33224"
],
"sabiork":[
"12886"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn12777"
]
}
},
{
"id":"OIVD3",
"name":"2-oxoisovalerate dehydrogenase (acylating; 3-methyl-2-oxopentanoate)",
"metabolites":{
"2mbcoa_c":1.0,
"3mop_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2509 and Gmet_2510 and Gmet_2511 and Gmet_2764) or (Gmet_2509 and Gmet_2510 and Gmet_2511 and Gmet_1896)",
"objective_coefficient":-5.55111512312578e-17,
"subsystem":"Valine, leucine and isoleucine degradation",
"notes":{
"original_bigg_ids":[
"OIVD3"
]
},
"annotation":{
"bigg.reaction":[
"OIVD3"
],
"biocyc":[
"META:2KETO-3METHYLVALERATE-RXN"
],
"ec-code":[
"1.2.1.25",
"1.2.1"
],
"metanetx.reaction":[
"MNXR102174"
],
"rhea":[
"30907",
"30908",
"30909",
"30910"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02269"
]
}
},
{
"id":"OMCDC",
"name":"2-Oxo-4-methyl-3-carboxypentanoate decarboxylation",
"metabolites":{
"3c4mop_c":-1.0,
"4mop_c":1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"s_0001",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"OMCDC"
]
},
"annotation":{
"bigg.reaction":[
"OMCDC"
],
"biocyc":[
"META:RXN-7800"
],
"ec-code":[
"1.1.1.85"
],
"kegg.reaction":[
"R01652"
],
"metanetx.reaction":[
"MNXR102180"
],
"rhea":[
"25078",
"25080",
"25081",
"25079"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01208"
]
}
},
{
"id":"OCBT",
"name":"Ornithine carbamoyltransferase",
"metabolites":{
"cbp_c":-1.0,
"citr__L_c":1.0,
"h_c":1.0,
"orn_c":-1.0,
"pi_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0205",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"OCBT"
]
},
"annotation":{
"bigg.reaction":[
"OCBT"
],
"biocyc":[
"META:RXN-13482",
"META:ORNCARBAMTRANSFER-RXN"
],
"ec-code":[
"2.1.3.3"
],
"kegg.reaction":[
"R01398"
],
"metanetx.reaction":[
"MNXR102137"
],
"reactome.reaction":[
"R-OSA-70560",
"R-ATH-70560",
"R-CFA-70560",
"R-HSA-70560",
"R-BTA-70560",
"R-DRE-70560",
"R-RNO-70560",
"R-GGA-70560",
"R-SPO-70560",
"R-TGU-70560",
"R-XTR-70560",
"R-SSC-70560",
"R-MMU-70560",
"R-GGA-187588",
"R-SCE-70560"
],
"rhea":[
"19514",
"19516",
"19513",
"19515"
],
"sabiork":[
"98"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01019"
]
}
},
{
"id":"OCDCAtexi",
"name":"Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ocdca_e":-1.0,
"ocdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1535",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"OCDCAtexi"
]
},
"annotation":{
"bigg.reaction":[
"OCDCAtexi"
],
"metanetx.reaction":[
"MNXR99109"
],
"rhea":[
"39807",
"39808",
"39809",
"39810"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09034",
"rxn09669"
]
}
},
{
"id":"OCDCEAtexi",
"name":"Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ocdcea_e":-1.0,
"ocdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1535",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"OCDCEAtexi"
]
},
"annotation":{
"bigg.reaction":[
"OCDCEAtexi"
],
"metanetx.reaction":[
"MNXR99110"
],
"rhea":[
"33658",
"33655",
"33656",
"33657"
],
"sabiork":[
"10346"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OCHCCH",
"name":"6-oxo-cyclohex-1-ene-carbonyl-CoA hydrolase",
"metabolites":{
"3hpimcoa_c":1.0,
"6occhcoa_c":-1.0,
"h2o_c":-2.0,
"h_c":-4.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2088",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"OCHCCH"
]
},
"annotation":{
"bigg.reaction":[
"OCHCCH"
],
"biocyc":[
"META:OAHTHAUERA-RXN"
],
"ec-code":[
"3.7.1.21"
],
"kegg.reaction":[
"R05594"
],
"metanetx.reaction":[
"MNXR102147"
],
"rhea":[
"39651",
"39652",
"39653",
"39654"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03873"
]
}
},
{
"id":"OMCPPCI",
"name":"Outer Membrane Cytochrome Periplasmic Cytochrome redox (electrons in)",
"metabolites":{
"omclo_e":1.0,
"omclr_e":-1.0,
"ppco_p":-1.0,
"ppcr_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"objective_coefficient":-0.00197670743759954,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"OMCPPCI"
]
},
"annotation":{
"bigg.reaction":[
"OMCPPCI"
],
"metanetx.reaction":[
"MNXR102181"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OMCPPCI2",
"name":"Outer Membrane Cytochrome Periplasmic Cytochrome redox (electrons in)",
"metabolites":{
"omclo_e":1.0,
"omclr_e":-1.0,
"ppc1o_p":-1.0,
"ppc1r_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"OMCPPCI2"
]
},
"annotation":{
"bigg.reaction":[
"OMCPPCI2"
],
"metanetx.reaction":[
"MNXR102182"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OCOAT1",
"name":"3-oxoacid CoA-transferase (Succinyl-CoA: acetoacetate)",
"metabolites":{
"aacoa_c":1.0,
"acac_c":-1.0,
"succ_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_3296 and Gmet_3297) or Gmet_2054 or Gmet_3294 or Gmet_3304",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"OCOAT1r"
]
},
"annotation":{
"bigg.reaction":[
"OCOAT1"
],
"biocyc":[
"META:RXNI-2"
],
"ec-code":[
"2.8.3.5"
],
"kegg.reaction":[
"R00410"
],
"metanetx.reaction":[
"MNXR102148"
],
"reactome.reaction":[
"R-DME-74177",
"R-DRE-74177",
"R-DDI-74177",
"R-CEL-74177",
"R-HSA-74177",
"R-TGU-74177",
"R-MMU-74177",
"R-SSC-74177",
"R-CFA-74177",
"R-XTR-74177",
"R-BTA-74177",
"R-RNO-74177",
"R-GGA-74177"
],
"rhea":[
"25481",
"25483",
"25482",
"25480"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00290"
]
}
},
{
"id":"OMCPPCO",
"name":"Outer Membrane Cytochrome Periplasmic Cytochrome redox (electrons Out)",
"metabolites":{
"omcho_e":-1.0,
"omchr_e":1.0,
"ppco_p":1.0,
"ppcr_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0930 and Gmet_2902",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"OMCPPCO"
]
},
"annotation":{
"bigg.reaction":[
"OMCPPCO"
],
"metanetx.reaction":[
"MNXR102183"
],
"sbo":"SBO:0000185"
}
},
{
"id":"HXPRT",
"name":"Hypoxanthine phosphoribosyltransferase (Hypoxanthine)",
"metabolites":{
"hxan_c":-1.0,
"imp_c":1.0,
"ppi_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2716",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"HXPRT"
]
},
"annotation":{
"bigg.reaction":[
"HXPRT"
],
"biocyc":[
"META:HYPOXANPRIBOSYLTRAN-RXN"
],
"ec-code":[
"2.4.2.8"
],
"kegg.reaction":[
"R01132"
],
"metanetx.reaction":[
"MNXR100752"
],
"rhea":[
"17976",
"17974",
"17973",
"17975"
],
"sabiork":[
"81"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00836"
]
}
},
{
"id":"OMPDC",
"name":"Orotidine-5'-phosphate decarboxylase",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"orot5p_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1355",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"OMPDC"
]
},
"annotation":{
"bigg.reaction":[
"OMPDC"
],
"biocyc":[
"META:OROTPDECARB-RXN"
],
"ec-code":[
"4.1.1.23"
],
"kegg.reaction":[
"R00965"
],
"metanetx.reaction":[
"MNXR102190"
],
"reactome.reaction":[
"R-TGU-73564",
"R-GGA-419461",
"R-SSC-73564",
"R-HSA-73564",
"R-SPO-73564",
"R-DRE-73564",
"R-DDI-73564",
"R-GGA-73564",
"R-CFA-73564",
"R-PFA-73564",
"R-ATH-73564",
"R-OSA-73564",
"R-BTA-73564",
"R-RNO-73564",
"R-MMU-73564",
"R-SCE-73564",
"R-CEL-73564",
"R-DME-73564",
"R-XTR-73564"
],
"rhea":[
"11597",
"11599",
"11596",
"11598"
],
"sabiork":[
"463"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00710"
]
}
},
{
"id":"OCOAT2r",
"name":"3-oxoacid CoA-transferase (Succinyl-CoA: 3-methylbutanoate)",
"metabolites":{
"3mb_c":-1.0,
"ivcoa_c":1.0,
"succ_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2054 or Gmet_3294 or Gmet_3304",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"OCOAT2r"
]
},
"annotation":{
"bigg.reaction":[
"OCOAT2r"
],
"metanetx.reaction":[
"MNXR102149"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OCOAT3r",
"name":"3-oxoacid CoA-transferase (Succinyl-CoA: 4-hydroxybutanoate)",
"metabolites":{
"4hbutcoa_c":1.0,
"ghb_c":-1.0,
"succ_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2054 or Gmet_3294 or Gmet_3304",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"OCOAT3r"
]
},
"annotation":{
"bigg.reaction":[
"OCOAT3r"
],
"metanetx.reaction":[
"MNXR102150"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OCTDPS",
"name":"Octaprenyl pyrophosphate synthase",
"metabolites":{
"frdp_c":-1.0,
"ipdp_c":-5.0,
"octdp_c":1.0,
"ppi_c":5.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2455",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"OCTDPS"
]
},
"annotation":{
"bigg.reaction":[
"OCTDPS"
],
"biocyc":[
"META:RXN-8992"
],
"ec-code":[
"2.5.1.90"
],
"kegg.reaction":[
"R09248"
],
"metanetx.reaction":[
"MNXR102153"
],
"rhea":[
"27801",
"27799",
"27800",
"27798"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09037"
]
}
},
{
"id":"OGCOAAT",
"name":"Oxopimelylcoa:glutarylcoa acyltransferase",
"metabolites":{
"3opimcoa_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"glutcoa_c":1.0,
"h_c":5.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2058",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"OGCOAAT"
]
},
"annotation":{
"bigg.reaction":[
"OGCOAAT"
],
"biocyc":[
"META:RXN-8032"
],
"ec-code":[
"2.3.1",
"2.3.1.16"
],
"kegg.reaction":[
"R05586"
],
"metanetx.reaction":[
"MNXR102157"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03866"
]
}
},
{
"id":"OOR2r",
"name":"2-ketoglutarate ferredoxin oxidoreductase",
"metabolites":{
"akg_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0,
"succoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1361 and Gmet_1362 and Gmet_1363 and Gmet_1364",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"OOR2r"
]
},
"annotation":{
"bigg.reaction":[
"OOR2r"
],
"metanetx.reaction":[
"MNXR102195"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OPMEACPD",
"name":"3-Oxo-pimeloyl-[ACP] methyl ester dehydratase",
"metabolites":{
"epmeACP_c":1.0,
"h2o_c":1.0,
"hpmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"OPMEACPD"
]
},
"annotation":{
"bigg.reaction":[
"OPMEACPD"
],
"biocyc":[
"META:RXN-11481"
],
"ec-code":[
"4.2.1.59"
],
"kegg.reaction":[
"R10121"
],
"metanetx.reaction":[
"MNXR102206"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OPMEACPR",
"name":"3-Oxo-pimeloyl-[ACP] methyl ester reductase",
"metabolites":{
"h_c":-1.0,
"hpmeACP_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"opmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1601 or Gmet_1694",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"OPMEACPR"
]
},
"annotation":{
"bigg.reaction":[
"OPMEACPR"
],
"metanetx.reaction":[
"MNXR102207"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OGMEACPD",
"name":"3-Oxo-glutaryl-[ACP] methyl ester dehydratase",
"metabolites":{
"egmeACP_c":1.0,
"h2o_c":1.0,
"hgmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"OGMEACPD"
]
},
"annotation":{
"bigg.reaction":[
"OGMEACPD"
],
"biocyc":[
"META:RXN-11477"
],
"ec-code":[
"4.2.1.59"
],
"kegg.reaction":[
"R10117"
],
"metanetx.reaction":[
"MNXR102159"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HYD4pp",
"name":"Hydrogenase (menaquinole, no proton translocation) (periplasm)",
"metabolites":{
"h2_p":1.0,
"mql8_c":-1.0,
"mqn8_c":1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"(Gmet_3329 and Gmet_3330 and Gmet_3331 and Gmet_3332) and (Gmet_0116 and Gmet_0117 and Gmet_0118 and Gmet_0119 and Gmet_0120 and Gmet_3156)",
"objective_coefficient":0.00197670743759948,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"HYD4pp"
]
},
"annotation":{
"bigg.reaction":[
"HYD4pp"
],
"metanetx.reaction":[
"MNXR100756"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OGMEACPR",
"name":"3-Oxo-glutaryl-[ACP] methyl ester reductase",
"metabolites":{
"h_c":-1.0,
"hgmeACP_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"ogmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1694 or Gmet_1601",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"OGMEACPR"
]
},
"annotation":{
"bigg.reaction":[
"OGMEACPR"
],
"metanetx.reaction":[
"MNXR102160"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OGMEACPS",
"name":"3-Oxo-glutaryl-[ACP] methyl ester synthase",
"metabolites":{
"co2_c":1.0,
"coa_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"malcoame_c":-1.0,
"ogmeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1599 or Gmet_3272",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"OGMEACPS"
]
},
"annotation":{
"bigg.reaction":[
"OGMEACPS"
],
"metanetx.reaction":[
"MNXR102161"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OHPBAT",
"name":"O-Phospho-4-hydroxy-L-threonine:2-oxoglutarate aminotransferase",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"ohpb_c":-1.0,
"phthr_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3173",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"OHPBAT"
]
},
"annotation":{
"bigg.reaction":[
"OHPBAT"
],
"biocyc":[
"META:PSERTRANSAMPYR-RXN"
],
"ec-code":[
"2.6.1.52"
],
"kegg.reaction":[
"R05085"
],
"metanetx.reaction":[
"MNXR102169"
],
"rhea":[
"16576",
"16575",
"16574",
"16573"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03445"
]
}
},
{
"id":"OPMEACPS",
"name":"3-Oxo-pimeloyl-[ACP] methyl ester synthase",
"metabolites":{
"ACP_c":1.0,
"co2_c":1.0,
"gmeACP_c":-1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"opmeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1695 or Gmet_1603",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"OPMEACPS"
]
},
"annotation":{
"bigg.reaction":[
"OPMEACPS"
],
"metanetx.reaction":[
"MNXR102208"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ORNTAC",
"name":"Ornithine transacetylase",
"metabolites":{
"acglu_c":1.0,
"acorn_c":-1.0,
"glu__L_c":-1.0,
"orn_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0952",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ORNTAC"
]
},
"annotation":{
"bigg.reaction":[
"ORNTAC"
],
"biocyc":[
"META:GLUTAMATE-N-ACETYLTRANSFERASE-RXN"
],
"ec-code":[
"2.3.1.35"
],
"kegg.reaction":[
"R02282"
],
"metanetx.reaction":[
"MNXR102221"
],
"rhea":[
"15349",
"15350",
"15351",
"15352"
],
"sabiork":[
"2247"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01636"
]
}
},
{
"id":"ORPT",
"name":"Orotate phosphoribosyltransferase",
"metabolites":{
"orot5p_c":-1.0,
"orot_c":1.0,
"ppi_c":-1.0,
"prpp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1938",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"ORPT"
]
},
"annotation":{
"bigg.reaction":[
"ORPT"
],
"biocyc":[
"META:OROPRIBTRANS-RXN"
],
"ec-code":[
"2.4.2.10"
],
"kegg.reaction":[
"R01870"
],
"metanetx.reaction":[
"MNXR102231"
],
"reactome.reaction":[
"R-SSC-73567",
"R-CFA-73567",
"R-GGA-73567",
"R-PFA-73567",
"R-XTR-73567",
"R-BTA-73567",
"R-SCE-73567",
"R-CEL-73567",
"R-SPO-73567",
"R-DRE-73567",
"R-MMU-73567",
"R-GGA-419462",
"R-DDI-73567",
"R-HSA-73567",
"R-ATH-73567",
"R-TGU-73567",
"R-OSA-73567",
"R-DME-73567",
"R-RNO-73567"
],
"rhea":[
"10381",
"10383",
"10382",
"10380"
],
"sabiork":[
"401"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01362"
]
}
},
{
"id":"OIVD1r",
"name":"2-oxoisovalerate dehydrogenase (acylating; 4-methyl-2-oxopentaoate)",
"metabolites":{
"4mop_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"ivcoa_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2509 and Gmet_2510 and Gmet_2511 and Gmet_2764) or (Gmet_2509 and Gmet_2510 and Gmet_2511 and Gmet_1896)",
"objective_coefficient":-5.55111512312578e-17,
"subsystem":"Valine, leucine and isoleucine degradation",
"notes":{
"original_bigg_ids":[
"OIVD1"
]
},
"annotation":{
"bigg.reaction":[
"OIVD1r"
],
"biocyc":[
"META:2KETO-4METHYL-PENTANOATE-DEHYDROG-RXN"
],
"ec-code":[
"1.2.1.25",
"1.2.1"
],
"kegg.reaction":[
"R01651"
],
"metanetx.reaction":[
"MNXR102172"
],
"rhea":[
"25179",
"25180",
"25177",
"25178"
],
"sabiork":[
"1788"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01207"
]
}
},
{
"id":"OXFOt4pp",
"name":"Oxalate:Formate antiporter (periplasm)",
"metabolites":{
"for_c":-1.0,
"for_p":1.0,
"oxa_c":1.0,
"oxa_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2465",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"OXFOt4pp"
]
},
"annotation":{
"bigg.reaction":[
"OXFOt4pp"
],
"biocyc":[
"META:TRANS-RXN-213"
],
"metanetx.reaction":[
"MNXR102242"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OXFOtex",
"name":"Oxalate:Formate antiporter (extracellular to periplasm)",
"metabolites":{
"oxa_e":-1.0,
"oxa_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"OXFOtex"
]
},
"annotation":{
"bigg.reaction":[
"OXFOtex"
],
"metanetx.reaction":[
"MNXR102238"
],
"sabiork":[
"14090"
],
"sbo":"SBO:0000185"
}
},
{
"id":"P5CD",
"name":"1-pyrroline-5-carboxylate dehydrogenase",
"metabolites":{
"1pyr5c_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-2.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3512",
"objective_coefficient":-0.00658902479199841,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"P5CD"
]
},
"annotation":{
"bigg.reaction":[
"P5CD"
],
"biocyc":[
"META:PYRROLINECARBDEHYDROG-RXN"
],
"ec-code":[
"1.5.1.12",
"1.2.1.88"
],
"kegg.reaction":[
"R00707"
],
"metanetx.reaction":[
"MNXR102301"
],
"rhea":[
"16417",
"16418",
"16419",
"16420"
],
"sabiork":[
"1083"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00503"
]
}
},
{
"id":"P5CR",
"name":"Pyrroline-5-carboxylate reductase",
"metabolites":{
"1pyr5c_c":-1.0,
"h_c":-2.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"pro__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0899",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"P5CR"
]
},
"annotation":{
"bigg.reaction":[
"P5CR"
],
"ec-code":[
"1.5.1.2"
],
"kegg.reaction":[
"R01251"
],
"metanetx.reaction":[
"MNXR102302"
],
"reactome.reaction":[
"R-DDI-6783955",
"R-DRE-6783955",
"R-TGU-6783955",
"R-PFA-6783955",
"R-CEL-6783955",
"R-MMU-6783955",
"R-RNO-6783955",
"R-HSA-6783955",
"R-SCE-6783955",
"R-ATH-6783955",
"R-SPO-6783955",
"R-OSA-6783955",
"R-CFA-6783955",
"R-DME-6783955",
"R-GGA-6783955",
"R-BTA-6783955"
],
"rhea":[
"14111",
"14112",
"14109",
"14110"
],
"sabiork":[
"1470"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00931"
]
}
},
{
"id":"OIVD2",
"name":"2-oxoisovalerate dehydrogenase (acylating; 3-methyl-2-oxobutanoate)",
"metabolites":{
"3mob_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"ibcoa_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2509 and Gmet_2510 and Gmet_2511 and Gmet_2764) or (Gmet_2509 and Gmet_2510 and Gmet_2511 and Gmet_1896)",
"subsystem":"Valine, leucine and isoleucine degradation",
"notes":{
"original_bigg_ids":[
"OIVD2"
]
},
"annotation":{
"bigg.reaction":[
"OIVD2"
],
"biocyc":[
"META:1.2.1.25-RXN"
],
"ec-code":[
"1.2.1.25"
],
"kegg.reaction":[
"R01210"
],
"metanetx.reaction":[
"MNXR102173"
],
"rhea":[
"13997",
"13999",
"13998",
"14000"
],
"sabiork":[
"1443"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00899"
]
}
},
{
"id":"PA120abcpp",
"name":"Phosphatidate transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa120_c":-1.0,
"pa120_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.341311484225515,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA120abcpp"
],
"metanetx.reaction":[
"MNXR102304"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09053"
]
}
},
{
"id":"HYXNtex",
"name":"Hypoxanthine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"hxan_e":-1.0,
"hxan_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"HYXNtex"
]
},
"annotation":{
"bigg.reaction":[
"HYXNtex"
],
"biocyc":[
"META:TRANS-RXN0-579",
"META:TRANS-RXN0-562"
],
"metanetx.reaction":[
"MNXR100749"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10143",
"rxn08737",
"rxn08738"
]
}
},
{
"id":"PA140abcpp",
"name":"Phosphatidate transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa140_c":-1.0,
"pa140_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.329451239599919,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA140abcpp"
],
"metanetx.reaction":[
"MNXR102305"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09054"
]
}
},
{
"id":"PA141abcpp",
"name":"Phosphatidate transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa141_c":-1.0,
"pa141_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.329451239599918,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA141abcpp"
],
"metanetx.reaction":[
"MNXR102306"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09055"
]
}
},
{
"id":"PA160abcpp",
"name":"Phosphatidate transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa160_c":-1.0,
"pa160_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.370303193310308,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA160abcpp"
],
"metanetx.reaction":[
"MNXR102307"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09056"
]
}
},
{
"id":"PA161abcpp",
"name":"Phosphatidate transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa161_c":-1.0,
"pa161_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.36239636355991,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA161abcpp"
],
"metanetx.reaction":[
"MNXR102308"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09057"
]
}
},
{
"id":"PGMT",
"name":"Phosphoglucomutase",
"metabolites":{
"g1p_c":-1.0,
"g6p_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0135 or Gmet_0990",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PGMT"
]
},
"annotation":{
"bigg.reaction":[
"PGMT"
],
"biocyc":[
"META:RXN-16999",
"META:PHOSPHOGLUCMUT-RXN"
],
"ec-code":[
"5.4.2.2",
"5.4.2.8",
"5.4.2.5"
],
"kegg.reaction":[
"R08639"
],
"metanetx.reaction":[
"MNXR102548"
],
"sabiork":[
"12817",
"7674"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00704"
]
}
},
{
"id":"PGP120abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp120_c":-1.0,
"pgp120_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP120abcpp"
],
"metanetx.reaction":[
"MNXR102550"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PGP140abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp140_c":-1.0,
"pgp140_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.00197670743759956,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP140abcpp"
],
"metanetx.reaction":[
"MNXR102551"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PGP141abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp141_c":-1.0,
"pgp141_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP141abcpp"
],
"metanetx.reaction":[
"MNXR102552"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PA180abcpp",
"name":"Phosphatidate transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa180_c":-1.0,
"pa180_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.424333196604695,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA180abcpp"
],
"metanetx.reaction":[
"MNXR102309"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09058"
]
}
},
{
"id":"PA181abcpp",
"name":"Phosphatidate transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa181_c":-1.0,
"pa181_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.416426366854297,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA181abcpp"
],
"metanetx.reaction":[
"MNXR102310"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09059"
]
}
},
{
"id":"PACCOAL",
"name":"Phenylacetate-CoA ligase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"pac_c":-1.0,
"phaccoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1818 or Gmet_1825 or Gmet_0950",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PACCOAL"
]
},
"annotation":{
"bigg.reaction":[
"PACCOAL"
],
"biocyc":[
"META:RXN-10819"
],
"ec-code":[
"6.2.1.30"
],
"kegg.reaction":[
"R02539"
],
"metanetx.reaction":[
"MNXR102315"
],
"reactome.reaction":[
"R-SCE-177157",
"R-SSC-177157",
"R-DDI-177157",
"R-CFA-177157",
"R-MMU-177157",
"R-BTA-177157",
"R-HSA-177157",
"R-RNO-177157"
],
"rhea":[
"20959",
"20958",
"20956",
"20957"
],
"sabiork":[
"2458"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01842"
]
}
},
{
"id":"PGP160abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp160_c":-1.0,
"pgp160_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.00197670743759956,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP160abcpp"
],
"metanetx.reaction":[
"MNXR102553"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09097"
]
}
},
{
"id":"PGP161abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp161_c":-1.0,
"pgp161_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.00197670743759956,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP161abcpp"
],
"metanetx.reaction":[
"MNXR102554"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09098"
]
}
},
{
"id":"PACCOAL2",
"name":"Phenylacetate-CoA ligase (hydroxyphenylacetate)",
"metabolites":{
"4hphac_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"hphaccoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1818 or Gmet_1825 or Gmet_0950",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PACCOAL2"
]
},
"annotation":{
"bigg.reaction":[
"PACCOAL2"
],
"ec-code":[
"6.2.1.-"
],
"metanetx.reaction":[
"MNXR102316"
],
"sbo":"SBO:0000176"
}
},
{
"id":"Htex",
"name":"Proton transport via diffusion (extracellular to periplasm)",
"metabolites":{
"h_e":-1.0,
"h_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"Htex"
]
},
"annotation":{
"bigg.reaction":[
"Htex"
],
"biocyc":[
"META:RXN-14452"
],
"metanetx.reaction":[
"MNXR100765"
],
"reactome.reaction":[
"R-HSA-2534378",
"R-DDI-74723",
"R-BTA-170026",
"R-CFA-170026",
"R-SCE-74723",
"R-DRE-74723",
"R-HSA-170026",
"R-TGU-2534378",
"R-HSA-74723",
"R-CFA-2534378",
"R-TGU-74723",
"R-OSA-170026",
"R-RNO-2534378",
"R-GGA-2534378",
"R-MMU-2534378",
"R-BTA-2534378",
"R-SSC-2534378",
"R-DRE-170026",
"R-TGU-170026",
"R-GGA-170026",
"R-SCE-170026",
"R-DRE-2534378",
"R-BTA-74723",
"R-SPO-74723",
"R-XTR-74723",
"R-RNO-74723",
"R-XTR-2534378",
"R-MMU-74723",
"R-CFA-74723",
"R-GGA-74723",
"R-CEL-170026",
"R-MMU-170026",
"R-ATH-74723",
"R-DME-74723",
"R-PFA-74723",
"R-SSC-74723",
"R-XTR-170026",
"R-SSC-170026",
"R-CEL-74723",
"R-ATH-170026",
"R-RNO-170026",
"R-DME-170026"
],
"rhea":[
"34980",
"34981",
"34982",
"34979"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11009",
"rxn08730"
]
}
},
{
"id":"PACCOAL3",
"name":"Phenylacetate-CoA ligase (indoleacetate)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ind3ac_c":-1.0,
"indaccoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1818 or Gmet_1825 or Gmet_0950",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PACCOAL3"
]
},
"annotation":{
"bigg.reaction":[
"PACCOAL3"
],
"metanetx.reaction":[
"MNXR102317"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10586"
]
}
},
{
"id":"PANTS",
"name":"Pantothenate synthase",
"metabolites":{
"ala_B_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pant__R_c":-1.0,
"pnto__R_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1643",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PANTS"
]
},
"annotation":{
"bigg.reaction":[
"PANTS"
],
"biocyc":[
"META:PANTOATE-BETA-ALANINE-LIG-RXN"
],
"ec-code":[
"6.3.2.1"
],
"kegg.reaction":[
"R02473"
],
"metanetx.reaction":[
"MNXR102345"
],
"rhea":[
"10914",
"10913",
"10915",
"10912"
],
"sabiork":[
"2406"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01791"
]
}
},
{
"id":"PGP180abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp180_c":-1.0,
"pgp180_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP180abcpp"
],
"metanetx.reaction":[
"MNXR102555"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09099"
]
}
},
{
"id":"PGP181abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp181_c":-1.0,
"pgp181_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.00197670743759951,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP181abcpp"
],
"metanetx.reaction":[
"MNXR102558"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PAPPT3",
"name":"Phospho-N-acetylmuramoyl-pentapeptide-transferase (meso-2,6-diaminopimelate)",
"metabolites":{
"uagmda_c":1.0,
"udcpp_c":-1.0,
"ugmda_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0409",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"PAPPT3"
]
},
"annotation":{
"bigg.reaction":[
"PAPPT3"
],
"ec-code":[
"2.7.8.13"
],
"metanetx.reaction":[
"MNXR102373"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03904"
]
}
},
{
"id":"PGPP120",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C14:0)",
"metabolites":{
"h2o_c":-1.0,
"pg120_c":1.0,
"pgp120_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP120"
]
},
"annotation":{
"bigg.reaction":[
"PGPP120"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102560"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PBUTT",
"name":"Phosphate butyryltransferase",
"metabolites":{
"btcoa_c":-1.0,
"butpi_c":1.0,
"coa_c":1.0,
"pi_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2098",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PBUTT"
]
},
"annotation":{
"bigg.reaction":[
"PBUTT"
],
"biocyc":[
"META:PHOSPHATE-BUTYRYLTRANSFERASE-RXN"
],
"ec-code":[
"2.3.1.19"
],
"kegg.reaction":[
"R01174"
],
"metanetx.reaction":[
"MNXR102390"
],
"rhea":[
"20894",
"20895",
"20892",
"20893"
],
"sabiork":[
"1411"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00871"
]
}
},
{
"id":"PGPP120pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)",
"metabolites":{
"h2o_p":-1.0,
"pg120_p":1.0,
"pgp120_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"objective_coefficient":-0.00197670743759953,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP120pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP120pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102560"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP140",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C14:0)",
"metabolites":{
"h2o_c":-1.0,
"pg140_c":1.0,
"pgp140_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP140"
]
},
"annotation":{
"bigg.reaction":[
"PGPP140"
],
"metanetx.reaction":[
"MNXR102561"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP140pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)",
"metabolites":{
"h2o_p":-1.0,
"pg140_p":1.0,
"pgp140_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP140pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP140pp"
],
"metanetx.reaction":[
"MNXR102561"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP141",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C14:1)",
"metabolites":{
"h2o_c":-1.0,
"pg141_c":1.0,
"pgp141_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP141"
]
},
"annotation":{
"bigg.reaction":[
"PGPP141"
],
"metanetx.reaction":[
"MNXR102562"
],
"sbo":"SBO:0000176"
}
},
{
"id":"I2FE2SR",
"name":"ISC [2Fe-2S] regeneration",
"metabolites":{
"2fe1s_c":-1.0,
"h_c":4.0,
"iscs_c":1.0,
"iscssh_c":-1.0,
"iscu_2fe2s_c":1.0,
"iscu_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0992 and Gmet_0991) or (Gmet_0872 and Gmet_0991)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"I2FE2SR"
]
},
"annotation":{
"bigg.reaction":[
"I2FE2SR"
],
"metanetx.reaction":[
"MNXR100766"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP141pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:1)",
"metabolites":{
"h2o_p":-1.0,
"pg141_p":1.0,
"pgp141_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"objective_coefficient":-0.00197670743759953,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP141pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP141pp"
],
"metanetx.reaction":[
"MNXR102562"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP160",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C16:0)",
"metabolites":{
"h2o_c":-1.0,
"pg160_c":1.0,
"pgp160_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP160"
]
},
"annotation":{
"bigg.reaction":[
"PGPP160"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102563"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09104"
]
}
},
{
"id":"PGPP160pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C16:0)",
"metabolites":{
"h2o_p":-1.0,
"pg160_p":1.0,
"pgp160_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP160pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP160pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102563"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09104"
]
}
},
{
"id":"PC",
"name":"Pyruvate carboxylase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"hco3_c":-1.0,
"oaa_c":1.0,
"pi_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0816",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PC"
]
},
"annotation":{
"bigg.reaction":[
"PC"
],
"biocyc":[
"META:PYRUVATE-CARBOXYLASE-RXN"
],
"ec-code":[
"6.4.1.1"
],
"kegg.reaction":[
"R00344"
],
"metanetx.reaction":[
"MNXR102391"
],
"rhea":[
"20847",
"20844",
"20845",
"20846"
],
"sabiork":[
"105"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00250"
]
}
},
{
"id":"PCMEH2pp",
"name":"P-cresol methylhydroxylase (membrane bound, enzyme)",
"metabolites":{
"4crsol_p":-1.0,
"4hba_p":1.0,
"h2o_p":-1.0,
"h_p":2.0,
"ppco_p":-2.0,
"ppcr_p":2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2119 and Gmet_2120 and Gmet_2121 and Gmet_2122 and Gmet_2123 and Gmet_2125 and Gmet_2126",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"PCMEH2pp"
]
},
"annotation":{
"bigg.reaction":[
"PCMEH2pp"
],
"metanetx.reaction":[
"MNXR102413"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PCMEH3pp",
"name":"P-cresol methylhydroxylase / 4-hydroxybenzyl alcohol dehydrogenase(membrane bound, enzyme)",
"metabolites":{
"4hba_p":-1.0,
"4hbald_p":1.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2119 and Gmet_2120 and Gmet_2121 and Gmet_2122 and Gmet_2123 and Gmet_2125 and Gmet_2126",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"PCMEH3pp"
]
},
"annotation":{
"bigg.reaction":[
"PCMEH3pp"
],
"metanetx.reaction":[
"MNXR102414"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PGPP161",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C16:1)",
"metabolites":{
"h2o_c":-1.0,
"pg161_c":1.0,
"pgp161_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP161"
]
},
"annotation":{
"bigg.reaction":[
"PGPP161"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102565"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09105"
]
}
},
{
"id":"PDE1",
"name":"3',5'-cyclic-nucleotide phosphodiesterase",
"metabolites":{
"amp_c":1.0,
"camp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"PDE1"
]
},
"annotation":{
"bigg.reaction":[
"PDE1"
],
"biocyc":[
"META:RXN0-5038"
],
"ec-code":[
"3.1.4.53",
"3.1.4.17"
],
"kegg.reaction":[
"R00191"
],
"metanetx.reaction":[
"MNXR95886"
],
"reactome.reaction":[
"R-MMU-111955",
"R-CFA-111955",
"R-SSC-162425",
"R-DME-111962",
"R-CEL-162425",
"R-DRE-418553",
"R-TGU-111962",
"R-HSA-418553",
"R-RNO-162425",
"R-HSA-111962",
"R-HSA-111955",
"R-RNO-111962",
"R-BTA-111955",
"R-BTA-111962",
"R-SSC-111962",
"R-GGA-111955",
"R-XTR-111962",
"R-RNO-418553",
"R-GGA-418553",
"R-MMU-418553",
"R-XTR-162425",
"R-PFA-418553",
"R-BTA-418553",
"R-BTA-162425",
"R-TGU-111955",
"R-XTR-418553",
"R-CEL-111955",
"R-MMU-162425",
"R-SSC-418553",
"R-CEL-418553",
"R-CFA-111962",
"R-DRE-162425",
"R-CEL-111962",
"R-TGU-162425",
"R-DDI-418553",
"R-SSC-111955",
"R-DME-418553",
"R-XTR-111955",
"R-MMU-111962",
"R-GGA-111962",
"R-TGU-418553",
"R-DME-111955",
"R-RNO-111955",
"R-DRE-111955",
"R-DRE-111962",
"R-DDI-111955",
"R-HSA-162425",
"R-GGA-162425",
"R-CFA-162425",
"R-CFA-418553"
],
"rhea":[
"25278",
"25280",
"25277",
"25279"
],
"sabiork":[
"292"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00140"
]
}
},
{
"id":"I2FE2SS",
"name":"ISC [2Fe-2S] Synthesis",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":-2.0,
"h_c":6.0,
"iscs_c":2.0,
"iscssh_c":-2.0,
"iscu_2fe2s_c":1.0,
"iscu_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0992 and Gmet_0991) or (Gmet_0872 and Gmet_0991)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"I2FE2SS"
]
},
"annotation":{
"bigg.reaction":[
"I2FE2SS"
],
"metanetx.reaction":[
"MNXR100767"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PDH",
"name":"Pyruvate dehydrogenase",
"metabolites":{
"accoa_c":1.0,
"co2_c":1.0,
"coa_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1896 and (Gmet_2753 and Gmet_2760) and Gmet_2752) or (Gmet_2764 and (Gmet_2753 and Gmet_2760) and Gmet_2752)",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PDH"
]
},
"annotation":{
"bigg.reaction":[
"PDH"
],
"biocyc":[
"META:PYRUVDEH-RXN"
],
"ec-code":[
"1.2.1",
"1.8.1.4",
"1.2.1.51",
"1.2.4.1",
"2.3.1.12"
],
"kegg.reaction":[
"R00209"
],
"metanetx.reaction":[
"MNXR102425"
],
"reactome.reaction":[
"R-RNO-71397",
"R-OSA-71397",
"R-GGA-373177",
"R-DME-71397",
"R-TGU-71397",
"R-XTR-71397",
"R-CFA-71397",
"R-BTA-71397",
"R-HSA-71397",
"R-GGA-71397",
"R-SPO-71397",
"R-CEL-71397",
"R-DDI-71397",
"R-DRE-71397",
"R-SSC-71397",
"R-SCE-71397",
"R-ATH-71397",
"R-MMU-71397"
],
"rhea":[
"28043",
"28045",
"28044",
"28042"
],
"sabiork":[
"523"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00154"
]
}
},
{
"id":"PDX5PO2",
"name":"Pyridoxine 5'-phosphate oxidase (anaerboic",
"metabolites":{
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pdx5p_c":-1.0,
"pydx5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PDX5PO2"
]
},
"annotation":{
"bigg.reaction":[
"PDX5PO2"
],
"metanetx.reaction":[
"MNXR102437"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09071"
]
}
},
{
"id":"PGPP161pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C16:1)",
"metabolites":{
"h2o_p":-1.0,
"pg161_p":1.0,
"pgp161_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP161pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP161pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102565"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09105"
]
}
},
{
"id":"PGPP180",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C18:0)",
"metabolites":{
"h2o_c":-1.0,
"pg180_c":1.0,
"pgp180_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP180"
]
},
"annotation":{
"bigg.reaction":[
"PGPP180"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102566"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09106"
]
}
},
{
"id":"PGPP180pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:0)",
"metabolites":{
"h2o_p":-1.0,
"pg180_p":1.0,
"pgp180_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"objective_coefficient":-0.00197670743759959,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP180pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP180pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102566"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09106"
]
}
},
{
"id":"PDX5PS",
"name":"Pyridoxine 5'-phosphate synthase",
"metabolites":{
"co2_c":1.0,
"dxyl5p_c":-1.0,
"h2o_c":2.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pdx5p_c":1.0,
"phthr_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3404 and Gmet_1885",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PDX5PS"
]
},
"annotation":{
"bigg.reaction":[
"PDX5PS"
],
"metanetx.reaction":[
"MNXR102439"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09072"
]
}
},
{
"id":"PGPP181",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C18:1)",
"metabolites":{
"h2o_c":-1.0,
"pg181_c":1.0,
"pgp181_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP181"
]
},
"annotation":{
"bigg.reaction":[
"PGPP181"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102567"
],
"sbo":"SBO:0000176"
}
},
{
"id":"I2FE2SS2",
"name":"ISC [2Fe-2S] Synthesis II",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":-2.0,
"h_c":6.0,
"iscs_c":2.0,
"iscssh_c":-2.0,
"iscu_2fe2s2_c":1.0,
"iscu_2fe2s_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0992 and Gmet_0991) or (Gmet_0872 and Gmet_0991)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"I2FE2SS2"
]
},
"annotation":{
"bigg.reaction":[
"I2FE2SS2"
],
"metanetx.reaction":[
"MNXR100768"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP181pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:1)",
"metabolites":{
"h2o_p":-1.0,
"pg181_p":1.0,
"pgp181_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0195",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP181pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP181pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102567"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGSA120",
"name":"Phosphatidylglycerol synthase (n-C12:0)",
"metabolites":{
"cdpdddecg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp120_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1952 or Gmet_0822",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA120"
]
},
"annotation":{
"bigg.reaction":[
"PGSA120"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102589"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PE120abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe120_c":-1.0,
"pe120_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE120abcpp"
],
"metanetx.reaction":[
"MNXR102441"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PE140abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe140_c":-1.0,
"pe140_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE140abcpp"
],
"metanetx.reaction":[
"MNXR102442"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PE141abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe141_c":-1.0,
"pe141_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.0046123173543989,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE141abcpp"
],
"metanetx.reaction":[
"MNXR102443"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PGSA140",
"name":"Phosphatidylglycerol synthase (n-C14:0)",
"metabolites":{
"cdpdtdecg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp140_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1952 or Gmet_0822",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA140"
]
},
"annotation":{
"bigg.reaction":[
"PGSA140"
],
"metanetx.reaction":[
"MNXR102590"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGSA141",
"name":"Phosphatidylglycerol synthase (n-C14:1)",
"metabolites":{
"cdpdtdec7eg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp141_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1952 or Gmet_0822",
"objective_coefficient":-0.367008680914309,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA141"
]
},
"annotation":{
"bigg.reaction":[
"PGSA141"
],
"metanetx.reaction":[
"MNXR102591"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PE160abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe160_c":-1.0,
"pe160_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE160abcpp"
],
"metanetx.reaction":[
"MNXR102444"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09076"
]
}
},
{
"id":"PE161abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe161_c":-1.0,
"pe161_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE161abcpp"
],
"metanetx.reaction":[
"MNXR102445"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PE180abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe180_c":-1.0,
"pe180_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.0046123173543989,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE180abcpp"
],
"metanetx.reaction":[
"MNXR102450"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09078"
]
}
},
{
"id":"PE181abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe181_c":-1.0,
"pe181_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE181abcpp"
],
"metanetx.reaction":[
"MNXR102459"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PGSA160",
"name":"Phosphatidylglycerol synthase (n-C16:0)",
"metabolites":{
"cdpdhdecg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp160_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1952 or Gmet_0822",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA160"
]
},
"annotation":{
"bigg.reaction":[
"PGSA160"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102592"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09111"
]
}
},
{
"id":"PGSA161",
"name":"Phosphatidylglycerol synthase (n-C16:1)",
"metabolites":{
"cdpdhdec9eg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp161_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1952 or Gmet_0822",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA161"
]
},
"annotation":{
"bigg.reaction":[
"PGSA161"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102594"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09112"
]
}
},
{
"id":"PGSA180",
"name":"Phosphatidylglycerol synthase (n-C18:0)",
"metabolites":{
"cdpdodecg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp180_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1952 or Gmet_0822",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA180"
]
},
"annotation":{
"bigg.reaction":[
"PGSA180"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102595"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09113"
]
}
},
{
"id":"PGSA181",
"name":"Phosphatidylglycerol synthase (n-C18:1)",
"metabolites":{
"cdpdodec11eg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp181_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1952 or Gmet_0822",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA181"
]
},
"annotation":{
"bigg.reaction":[
"PGSA181"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102596"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PEPCK_re",
"name":"Phosphoenolpyruvate carboxykinase (GTP)",
"metabolites":{
"co2_c":1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"oaa_c":-1.0,
"pep_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3169 or Gmet_2638",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PEPCK"
]
},
"annotation":{
"bigg.reaction":[
"PEPCK_re"
],
"biocyc":[
"META:4.1.1.32-RXN"
],
"ec-code":[
"4.1.1.32"
],
"kegg.reaction":[
"R00431"
],
"metanetx.reaction":[
"MNXR102487"
],
"reactome.reaction":[
"R-XTR-70241",
"R-GGA-70241",
"R-RNO-70241",
"R-DME-372819",
"R-CFA-372819",
"R-DME-70241",
"R-HSA-70241",
"R-BTA-372819",
"R-DDI-372819",
"R-CFA-70241",
"R-TGU-70241",
"R-BTA-70241",
"R-GGA-372741",
"R-RNO-372819",
"R-DDI-70241",
"R-CEL-70241",
"R-DRE-70241",
"R-MMU-372819",
"R-XTR-372819",
"R-CEL-372819",
"R-GGA-372724",
"R-SSC-372819",
"R-HSA-372819",
"R-SSC-70241",
"R-MMU-70241"
],
"rhea":[
"10388",
"10389",
"10390",
"10391"
],
"sabiork":[
"106"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00305"
]
}
},
{
"id":"I2FE2ST",
"name":"ISC [2Fe-2S] Transfer",
"metabolites":{
"2fe2s_c":1.0,
"h_c":-4.0,
"iscu_2fe2s_c":-1.0,
"iscu_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0992 and Gmet_0991) or (Gmet_0872 and Gmet_0991)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"I2FE2ST"
]
},
"annotation":{
"bigg.reaction":[
"I2FE2ST"
],
"metanetx.reaction":[
"MNXR100769"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PERD",
"name":"Erythronate 4-phosphate (4per) dehydrogenase",
"metabolites":{
"4per_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"ohpb_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2378",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PERD"
]
},
"annotation":{
"bigg.reaction":[
"PERD"
],
"biocyc":[
"META:ERYTHRON4PDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.290"
],
"kegg.reaction":[
"R04210"
],
"metanetx.reaction":[
"MNXR102495"
],
"rhea":[
"18831",
"18830",
"18832",
"18829"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02939"
]
}
},
{
"id":"PFK",
"name":"Phosphofructokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"f6p_c":-1.0,
"fdp_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1640 or Gmet_0938",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PFK"
]
},
"annotation":{
"bigg.reaction":[
"PFK"
],
"ec-code":[
"2.7.1.11"
],
"metanetx.reaction":[
"MNXR102507"
],
"rhea":[
"16111",
"16109",
"16110",
"16112"
],
"sbo":"SBO:0000176"
}
},
{
"id":"VNDH_2",
"name":"4-hydroxybenzaldehyde dehydrogenase",
"metabolites":{
"4hbald_c":-1.0,
"4hbz_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2131",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"PHBEALD"
]
},
"annotation":{
"bigg.reaction":[
"VNDH_2"
],
"biocyc":[
"META:HYDROXYBENZALDEHYDE-OXIDATION-NAD-RXN"
],
"ec-code":[
"1.2.1.64",
"1.2.1.28"
],
"kegg.reaction":[
"R01293"
],
"metanetx.reaction":[
"MNXR105209"
],
"rhea":[
"20308",
"20305",
"20306",
"20307"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00957"
]
}
},
{
"id":"PHENOLt2pp",
"name":"Phenol transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"phenol_c":1.0,
"phenol_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PHENOLt2pp"
]
},
"annotation":{
"bigg.reaction":[
"PHENOLt2pp"
],
"metanetx.reaction":[
"MNXR102626"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PHENOLtex",
"name":"Phenol transport via diffusion (extra-organism to periplasm)",
"metabolites":{
"phenol_e":1.0,
"phenol_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2107 or (Gmet_1832 or Gmet_2727)",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"PHENOLtex"
]
},
"annotation":{
"bigg.reaction":[
"PHENOLtex"
],
"metanetx.reaction":[
"MNXR102627"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PG120abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg120_c":-1.0,
"pg120_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG120abcpp"
],
"metanetx.reaction":[
"MNXR102516"
],
"sbo":"SBO:0000185"
}
},
{
"id":"I4FE4SR",
"name":"ISC [4Fe-4S] Reduction",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"h_c":-2.0,
"iscu_2fe2s2_c":-1.0,
"iscu_4fe4s_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0992 and Gmet_0991) or (Gmet_0872 and Gmet_0991)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"I4FE4SR"
]
},
"annotation":{
"bigg.reaction":[
"I4FE4SR"
],
"metanetx.reaction":[
"MNXR100770"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PG140abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg140_c":-1.0,
"pg140_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG140abcpp"
],
"metanetx.reaction":[
"MNXR102517"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PG141abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg141_c":-1.0,
"pg141_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG141abcpp"
],
"metanetx.reaction":[
"MNXR102518"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PHEPC",
"name":"Phenylphosphate carboxylase",
"metabolites":{
"4hbz_c":1.0,
"co2_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"pphos_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2102",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"PHEPC"
]
},
"annotation":{
"bigg.reaction":[
"PHEPC"
],
"biocyc":[
"META:PHENYLPCARB-RXN"
],
"ec-code":[
"6.4.1.-"
],
"kegg.reaction":[
"R05603"
],
"metanetx.reaction":[
"MNXR102629"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03882"
]
}
},
{
"id":"I4FE4ST",
"name":"ISC [4Fe-4S] Transfer",
"metabolites":{
"4fe4s_c":1.0,
"h_c":-4.0,
"iscu_4fe4s_c":-1.0,
"iscu_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0992 and Gmet_0991) or (Gmet_0872 and Gmet_0991)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"I4FE4ST"
]
},
"annotation":{
"bigg.reaction":[
"I4FE4ST"
],
"metanetx.reaction":[
"MNXR100771"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PHEPS",
"name":"Phenylphosphate synthase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"phenol_c":-1.0,
"pi_c":1.0,
"pphos_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2100 and Gmet_2101",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"PHEPS"
]
},
"annotation":{
"bigg.reaction":[
"PHEPS"
],
"ec-code":[
"2.7.9.-"
],
"kegg.reaction":[
"R05625"
],
"metanetx.reaction":[
"MNXR102630"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn12009"
]
}
},
{
"id":"PG160abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg160_c":-1.0,
"pg160_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG160abcpp"
],
"metanetx.reaction":[
"MNXR102519"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09088"
]
}
},
{
"id":"PG161abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg161_c":-1.0,
"pg161_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG161abcpp"
],
"metanetx.reaction":[
"MNXR102520"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09089"
]
}
},
{
"id":"PG180abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg180_c":-1.0,
"pg180_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG180abcpp"
],
"metanetx.reaction":[
"MNXR102521"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09090"
]
}
},
{
"id":"IBTMr",
"name":"Isobutyryl-CoA mutase",
"metabolites":{
"btcoa_c":-1.0,
"ibcoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2208 and Gmet_2209) or (Gmet_1574 and Gmet_3251)",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"IBTMr"
]
},
"annotation":{
"bigg.reaction":[
"IBTMr"
],
"biocyc":[
"META:ISOBUTYRYL-COA-MUTASE-RXN"
],
"ec-code":[
"5.4.99.13"
],
"kegg.reaction":[
"R01181"
],
"metanetx.reaction":[
"MNXR100777"
],
"rhea":[
"13144",
"13142",
"13141",
"13143"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00877"
]
}
},
{
"id":"PG181abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg181_c":-1.0,
"pg181_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG181abcpp"
],
"metanetx.reaction":[
"MNXR102524"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PGAMT",
"name":"Phosphoglucosamine mutase",
"metabolites":{
"gam1p_c":-1.0,
"gam6p_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1886",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"PGAMT"
]
},
"annotation":{
"bigg.reaction":[
"PGAMT"
],
"biocyc":[
"META:5.4.2.10-RXN"
],
"ec-code":[
"5.4.2.10"
],
"kegg.reaction":[
"R02060"
],
"metanetx.reaction":[
"MNXR102526"
],
"rhea":[
"23427",
"23425",
"23426",
"23424"
],
"sabiork":[
"2077"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01485"
]
}
},
{
"id":"PHETA1",
"name":"Phenylalanine transaminase",
"metabolites":{
"akg_c":-1.0,
"glu__L_c":1.0,
"phe__L_c":-1.0,
"phpyr_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3325 or Gmet_3433 or Gmet_0732",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PHETA1"
]
},
"annotation":{
"bigg.reaction":[
"PHETA1"
],
"biocyc":[
"META:PHEAMINOTRANS-RXN",
"META:RXN-10814"
],
"ec-code":[
"2.6.1.57",
"2.6.1.5",
"2.6.1.9",
"2.6.1.1"
],
"kegg.reaction":[
"R00694"
],
"metanetx.reaction":[
"MNXR126234"
],
"rhea":[
"25153",
"25155",
"25152",
"25154"
],
"sabiork":[
"1074"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00493"
]
}
},
{
"id":"PHETRS",
"name":"Phenylalanyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"phe__L_c":-1.0,
"phetrna_c":1.0,
"ppi_c":1.0,
"trnaphe_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1415 and Gmet_1416",
"objective_coefficient":-0.113990128901572,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PHETRS"
]
},
"annotation":{
"bigg.reaction":[
"PHETRS"
],
"ec-code":[
"6.1.1.20"
],
"kegg.reaction":[
"R03660"
],
"metanetx.reaction":[
"MNXR102634"
],
"reactome.reaction":[
"R-HSA-379848",
"R-HSA-380203"
],
"sabiork":[
"409"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06444"
]
}
},
{
"id":"PICH",
"name":"Phenylitaconyl-CoA hydratase",
"metabolites":{
"h2o_c":-1.0,
"hmpscoa_c":1.0,
"phitcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1524",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"PICH"
]
},
"annotation":{
"bigg.reaction":[
"PICH"
],
"ec-code":[
"4.2.1.-"
],
"kegg.reaction":[
"R05599"
],
"metanetx.reaction":[
"MNXR102822"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03878"
]
}
},
{
"id":"PIt2rpp",
"name":"Phosphate reversible transport via symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"pi_c":1.0,
"pi_p":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3131",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PIt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"PIt2rpp"
],
"biocyc":[
"META:TRANS-RXN-114"
],
"metanetx.reaction":[
"MNXR102872"
],
"rhea":[
"29939",
"29941",
"29940",
"29942"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05312",
"rxn09833",
"rxn09811",
"rxn09872",
"rxn09723",
"rxn09120"
]
}
},
{
"id":"PIt7ipp",
"name":"Phosphate transport in via three Na+ symporter (periplasm)",
"metabolites":{
"na1_c":3.0,
"na1_p":-3.0,
"pi_c":1.0,
"pi_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1829",
"objective_coefficient":-0.00988353718799763,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PIt7ipp"
]
},
"annotation":{
"bigg.reaction":[
"PIt7ipp"
],
"metanetx.reaction":[
"MNXR102874"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05313"
]
}
},
{
"id":"PGCD",
"name":"Phosphoglycerate dehydrogenase",
"metabolites":{
"3pg_c":-1.0,
"3php_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2378",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PGCD"
]
},
"annotation":{
"bigg.reaction":[
"PGCD"
],
"biocyc":[
"META:PGLYCDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.95"
],
"kegg.reaction":[
"R01513"
],
"metanetx.reaction":[
"MNXR102527"
],
"reactome.reaction":[
"R-DME-977348",
"R-RNO-977348",
"R-ATH-977348",
"R-GGA-977348",
"R-DDI-977348",
"R-HSA-977348",
"R-SCE-977348",
"R-SPO-977348",
"R-OSA-977348",
"R-SSC-977348",
"R-CEL-977348",
"R-MMU-977348",
"R-DRE-977348",
"R-BTA-977348",
"R-CFA-977348",
"R-XTR-977348"
],
"rhea":[
"12644",
"12643",
"12642",
"12641"
],
"sabiork":[
"8970"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01101"
]
}
},
{
"id":"PGI",
"name":"Glucose-6-phosphate isomerase",
"metabolites":{
"f6p_c":1.0,
"g6p_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2458",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PGI"
]
},
"annotation":{
"bigg.reaction":[
"PGI"
],
"biocyc":[
"META:PGLUCISOM-RXN"
],
"ec-code":[
"5.3.1.9"
],
"metanetx.reaction":[
"MNXR102535"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGK",
"name":"Phosphoglycerate kinase",
"metabolites":{
"13dpg_c":1.0,
"3pg_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1947",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PGK"
]
},
"annotation":{
"bigg.reaction":[
"PGK"
],
"biocyc":[
"META:PHOSGLYPHOS-RXN"
],
"ec-code":[
"2.7.2.3"
],
"kegg.reaction":[
"R01512"
],
"metanetx.reaction":[
"MNXR102538"
],
"reactome.reaction":[
"R-ATH-71850",
"R-DME-71850",
"R-GGA-71850",
"R-SPO-71850",
"R-OSA-71850",
"R-GGA-353039",
"R-GGA-353023",
"R-BTA-71850",
"R-CFA-70486",
"R-MMU-71850",
"R-DME-70486",
"R-PFA-71850",
"R-SPO-70486",
"R-SCE-70486",
"R-PFA-70486",
"R-SSC-70486",
"R-ATH-70486",
"R-DRE-70486",
"R-HSA-70486",
"R-OSA-70486",
"R-XTR-71850",
"R-MMU-70486",
"R-RNO-70486",
"R-TGU-70486",
"R-DRE-71850",
"R-SSC-71850",
"R-SCE-71850",
"R-CFA-71850",
"R-XTR-70486",
"R-DDI-70486",
"R-DDI-71850",
"R-RNO-71850",
"R-BTA-70486",
"R-CEL-70486",
"R-HSA-71850",
"R-CEL-71850",
"R-GGA-70486",
"R-TGU-71850"
],
"rhea":[
"14801",
"14804",
"14802",
"14803"
],
"sabiork":[
"7644"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01100"
]
}
},
{
"id":"PGL",
"name":"6-phosphogluconolactonase",
"metabolites":{
"6pgc_c":1.0,
"6pgl_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2618",
"objective_coefficient":-0.00329451239599909,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PGL"
]
},
"annotation":{
"bigg.reaction":[
"PGL"
],
"biocyc":[
"META:6PGLUCONOLACT-RXN"
],
"ec-code":[
"3.1.1.31"
],
"kegg.reaction":[
"R02035"
],
"metanetx.reaction":[
"MNXR102539"
],
"reactome.reaction":[
"R-OSA-71296",
"R-CFA-71296",
"R-CEL-71296",
"R-GGA-71296",
"R-MMU-71296",
"R-SSC-71296",
"R-BTA-71296",
"R-ATH-71296",
"R-DME-71296",
"R-DRE-71296",
"R-SCE-71296",
"R-HSA-71296",
"R-XTR-71296",
"R-RNO-71296",
"R-DDI-71296",
"R-SPO-71296"
],
"rhea":[
"12559",
"12556",
"12557",
"12558"
],
"sabiork":[
"109"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01476"
]
}
},
{
"id":"PItex",
"name":"Phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pi_e":-1.0,
"pi_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"PItex"
]
},
"annotation":{
"bigg.reaction":[
"PItex"
],
"biocyc":[
"META:TRANS-RXN0-470"
],
"metanetx.reaction":[
"MNXR102871"
],
"rhea":[
"32824",
"32826",
"32825",
"32823"
],
"sabiork":[
"10985"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10838",
"rxn09722",
"rxn09121",
"rxn13178"
]
}
},
{
"id":"PIuabcpp",
"name":"Phosphate transport via ABC system (uptake, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":2.0,
"pi_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2703 and Gmet_2704 and Gmet_2702 and Gmet_2701",
"objective_coefficient":-0.0046123173543989,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PIuabcpp"
]
},
"annotation":{
"bigg.reaction":[
"PIuabcpp"
],
"biocyc":[
"META:ABC-27-RXN"
],
"ec-code":[
"3.6.3.27"
],
"metanetx.reaction":[
"MNXR102870"
],
"rhea":[
"24441#1",
"24442#1",
"24443#1",
"24440#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05145",
"rxn09122"
]
}
},
{
"id":"PGLUSYN",
"name":"Poly glutamate synthesis Reaction",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glu__D_c":-1.0,
"pi_c":1.0,
"polglu_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3529",
"objective_coefficient":-0.0461231735439885,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"PGLUSYN"
]
},
"annotation":{
"bigg.reaction":[
"PGLUSYN"
],
"metanetx.reaction":[
"MNXR102542"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PMANM",
"name":"Phosphomannomutase",
"metabolites":{
"man1p_c":-1.0,
"man6p_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0135 or Gmet_0990",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PMANM"
]
},
"annotation":{
"bigg.reaction":[
"PMANM"
],
"biocyc":[
"META:PHOSMANMUT-RXN"
],
"ec-code":[
"5.4.2.8"
],
"kegg.reaction":[
"R01818"
],
"metanetx.reaction":[
"MNXR101729"
],
"reactome.reaction":[
"R-MMU-446201",
"R-SPO-446201",
"R-SSC-446201",
"R-RNO-446201",
"R-DDI-446201",
"R-SCE-446201",
"R-GGA-446201",
"R-OSA-446201",
"R-ATH-446201",
"R-DME-446201",
"R-PFA-446201",
"R-TGU-446201",
"R-XTR-446201",
"R-BTA-446201",
"R-CEL-446201",
"R-HSA-446201",
"R-CFA-446201",
"R-DRE-446201"
],
"rhea":[
"11141",
"11143",
"11142",
"11140"
],
"sabiork":[
"69"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01329"
]
}
},
{
"id":"PGM",
"name":"Phosphoglycerate mutase",
"metabolites":{
"2pg_c":-1.0,
"3pg_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1653 or Gmet_1428 or Gmet_3203",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PGM"
]
},
"annotation":{
"bigg.reaction":[
"PGM"
],
"biocyc":[
"META:3PGAREARR-RXN",
"META:RXN-15513"
],
"ec-code":[
"5.4.2.1",
"5.4.2.11",
"5.4.2.12"
],
"kegg.reaction":[
"R01518"
],
"metanetx.reaction":[
"MNXR102547"
],
"reactome.reaction":[
"R-XTR-71654",
"R-SSC-71654",
"R-DME-71445",
"R-XTR-71445",
"R-RNO-71445",
"R-GGA-71654",
"R-SSC-71445",
"R-GGA-71445",
"R-DDI-71654",
"R-SPO-71654",
"R-MMU-71445",
"R-BTA-71445",
"R-CFA-71445",
"R-PFA-71445",
"R-GGA-352994",
"R-TGU-71654",
"R-SPO-71445",
"R-HSA-71445",
"R-ATH-71654",
"R-MMU-71654",
"R-BTA-71654",
"R-GGA-353014",
"R-DRE-71654",
"R-HSA-71654",
"R-CFA-71654",
"R-OSA-71654",
"R-DDI-71445",
"R-RNO-71654",
"R-DRE-71445",
"R-OSA-71445",
"R-PFA-71654",
"R-DME-71654",
"R-TGU-71445",
"R-SCE-71445",
"R-ATH-71445",
"R-SCE-71654"
],
"rhea":[
"15902",
"15903",
"15901",
"15904"
],
"sabiork":[
"7641"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01106"
]
}
},
{
"id":"IBTtex",
"name":"Isobutyrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ibt_e":-1.0,
"ibt_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"IBTtex"
]
},
"annotation":{
"bigg.reaction":[
"IBTtex"
],
"metanetx.reaction":[
"MNXR100778"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PMDPHT",
"name":"Pyrimidine phosphatase",
"metabolites":{
"4r5au_c":1.0,
"5aprbu_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PMDPHT"
]
},
"annotation":{
"bigg.reaction":[
"PMDPHT"
],
"biocyc":[
"META:RIBOPHOSPHAT-RXN"
],
"ec-code":[
"3.1.3.104",
"3.1.3.-"
],
"kegg.reaction":[
"R07280"
],
"metanetx.reaction":[
"MNXR96145"
],
"rhea":[
"25197",
"25200",
"25198",
"25199"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05039"
]
}
},
{
"id":"PMEACPE",
"name":"Pimeloyl-[ACP] methyl ester esterase",
"metabolites":{
"h2o_c":-1.0,
"meoh_c":1.0,
"pimACP_c":1.0,
"pmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0843",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PMEACPE"
]
},
"annotation":{
"bigg.reaction":[
"PMEACPE"
],
"biocyc":[
"META:RXN-11483"
],
"ec-code":[
"3.1.1.85"
],
"kegg.reaction":[
"R09725"
],
"metanetx.reaction":[
"MNXR103041"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PMPK",
"name":"Phosphomethylpyrimidine kinase",
"metabolites":{
"2mahmp_c":1.0,
"4ampm_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2909",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PMPK"
]
},
"annotation":{
"bigg.reaction":[
"PMPK"
],
"ec-code":[
"2.7.4.7"
],
"metanetx.reaction":[
"MNXR143305"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03108"
]
}
},
{
"id":"PNTK",
"name":"Pantothenate kinase",
"metabolites":{
"4ppan_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pnto__R_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1986",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PNTK"
]
},
"annotation":{
"bigg.reaction":[
"PNTK"
],
"biocyc":[
"META:PANTOTHENATE-KIN-RXN"
],
"ec-code":[
"2.7.1.33"
],
"kegg.reaction":[
"R03018"
],
"metanetx.reaction":[
"MNXR103050"
],
"reactome.reaction":[
"R-MMU-199203",
"R-XTR-199203",
"R-HSA-196857",
"R-TGU-196857",
"R-BTA-199203",
"R-DRE-199203",
"R-CFA-199203",
"R-SSC-199203",
"R-CFA-196857",
"R-TGU-199203",
"R-SSC-196857",
"R-PFA-199203",
"R-MMU-196857",
"R-SCE-196857",
"R-RNO-199203",
"R-GGA-199203",
"R-DME-199203",
"R-DRE-196857",
"R-BTA-196857",
"R-HSA-199203",
"R-XTR-196857",
"R-GGA-196857",
"R-DME-196857",
"R-PFA-196857",
"R-SCE-199203",
"R-RNO-196857"
],
"rhea":[
"16376",
"16375",
"16373",
"16374"
],
"sabiork":[
"2868"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn12510"
]
}
},
{
"id":"PPCK",
"name":"Phosphoenolpyruvate carboxykinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"co2_c":1.0,
"oaa_c":-1.0,
"pep_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3169 or Gmet_2638",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PPCK"
]
},
"annotation":{
"bigg.reaction":[
"PPCK"
],
"biocyc":[
"META:PEPCARBOXYKIN-RXN"
],
"ec-code":[
"4.1.1.49"
],
"kegg.reaction":[
"R00341"
],
"metanetx.reaction":[
"MNXR103099"
],
"rhea":[
"18620",
"18618",
"18617",
"18619"
],
"sabiork":[
"151"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00247"
]
}
},
{
"id":"POR",
"name":"Pyruvate synthase",
"metabolites":{
"accoa_c":1.0,
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0,
"pyr_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3419",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"POR"
]
},
"annotation":{
"bigg.reaction":[
"POR"
],
"metanetx.reaction":[
"MNXR103060"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ICDHyr",
"name":"Isocitrate dehydrogenase (NADP)",
"metabolites":{
"akg_c":1.0,
"co2_c":1.0,
"icit_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1359",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"ICDHyr"
]
},
"annotation":{
"bigg.reaction":[
"ICDHyr"
],
"ec-code":[
"1.1.1.42"
],
"kegg.reaction":[
"R00267"
],
"metanetx.reaction":[
"MNXR100781"
],
"rhea":[
"19629",
"19630",
"19631",
"19632"
],
"sabiork":[
"269"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00198"
]
}
},
{
"id":"POR3b",
"name":"Pyruvate synthase",
"metabolites":{
"2obut_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0,
"ppcoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1307 and Gmet_1308 and Gmet_1309 and Gmet_1306",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"POR3b"
]
},
"annotation":{
"bigg.reaction":[
"POR3b"
],
"metanetx.reaction":[
"MNXR103063"
],
"sbo":"SBO:0000176"
}
},
{
"id":"POR5",
"name":"Pyruvate synthase",
"metabolites":{
"accoa_c":1.0,
"co2_c":1.0,
"coa_c":-1.0,
"flxr_c":2.0,
"flxso_c":-2.0,
"h_c":1.0,
"pyr_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3419",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"POR5"
]
},
"annotation":{
"bigg.reaction":[
"POR5"
],
"metanetx.reaction":[
"MNXR103064"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPCOAC",
"name":"Propionyl-CoA carboxylase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"hco3_c":-1.0,
"mmcoa__S_c":1.0,
"pi_c":1.0,
"ppcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3248 and Gmet_3249",
"objective_coefficient":2.77555756156289e-17,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PPCOAC"
]
},
"annotation":{
"bigg.reaction":[
"PPCOAC"
],
"biocyc":[
"META:PROPIONYL-COA-CARBOXY-RXN"
],
"ec-code":[
"6.4.1.3"
],
"kegg.reaction":[
"R01859"
],
"metanetx.reaction":[
"MNXR103100"
],
"rhea":[
"23721",
"23723",
"23720",
"23722"
],
"sabiork":[
"1929"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01355"
]
}
},
{
"id":"PPCSCT",
"name":"Propanoyl-CoA: succinate CoA-transferase",
"metabolites":{
"ppa_c":1.0,
"ppcoa_c":-1.0,
"succ_c":-1.0,
"succoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1125",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PPCSCTr"
]
},
"annotation":{
"bigg.reaction":[
"PPCSCT"
],
"ec-code":[
"2.8.3.1"
],
"metanetx.reaction":[
"MNXR103103"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPA",
"name":"Inorganic diphosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":2.0,
"ppi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0503 or Gmet_0880 or Gmet_1419",
"objective_coefficient":-0.00658902479199845,
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"PPA"
]
},
"annotation":{
"bigg.reaction":[
"PPA"
],
"biocyc":[
"META:INORGPYROPHOSPHAT-RXN"
],
"ec-code":[
"3.6.1.1"
],
"kegg.reaction":[
"R00004"
],
"metanetx.reaction":[
"MNXR100808"
],
"reactome.reaction":[
"R-GGA-6788912",
"R-HSA-449937",
"R-RNO-449937",
"R-DME-449937",
"R-RNO-71732",
"R-SSC-449937",
"R-HSA-71732",
"R-SCE-449937",
"R-SSC-71732",
"R-GGA-71732",
"R-DRE-6788912",
"R-TGU-6788912",
"R-DRE-71732",
"R-PFA-71732",
"R-BTA-6788912",
"R-CEL-71732",
"R-SPO-71732",
"R-MMU-449937",
"R-ATH-449937",
"R-CFA-6788912",
"R-DRE-449937",
"R-MMU-71732",
"R-OSA-71732",
"R-XTR-449937",
"R-CFA-71732",
"R-ATH-71732",
"R-SSC-6788912",
"R-CEL-449937",
"R-OSA-449937",
"R-BTA-449937",
"R-XTR-6788912",
"R-GGA-449937",
"R-BTA-71732",
"R-DDI-71732",
"R-HSA-6788912",
"R-SCE-71732",
"R-SPO-449937",
"R-TGU-449937",
"R-CEL-6788912",
"R-MMU-6788912",
"R-PFA-449937",
"R-TGU-71732",
"R-XTR-71732",
"R-CFA-449937",
"R-RNO-6788912",
"R-DME-71732",
"R-DDI-449937"
],
"rhea":[
"24577",
"24576",
"24579",
"24578"
],
"sabiork":[
"76"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00001",
"rxn11226"
]
}
},
{
"id":"PPA2",
"name":"Inorganic triphosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ppi_c":1.0,
"pppi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0880 or Gmet_0503 or Gmet_1419",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"PPA2"
]
},
"annotation":{
"bigg.reaction":[
"PPA2"
],
"biocyc":[
"META:TRIPHOSPHATASE-RXN"
],
"ec-code":[
"3.6.1.25"
],
"kegg.reaction":[
"R00138"
],
"metanetx.reaction":[
"MNXR103069"
],
"rhea":[
"14158",
"14160",
"14157",
"14159"
],
"sabiork":[
"707"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00106"
]
}
},
{
"id":"PPDK",
"name":"Pyruvate,phosphate dikinase.",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pep_c":1.0,
"pi_c":-1.0,
"ppi_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2940",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PPDK"
]
},
"annotation":{
"bigg.reaction":[
"PPDK"
],
"biocyc":[
"META:PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN"
],
"ec-code":[
"2.7.9.1"
],
"kegg.reaction":[
"R00206"
],
"metanetx.reaction":[
"MNXR103107"
],
"rhea":[
"10758",
"10756",
"10757",
"10759"
],
"sabiork":[
"147"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00151"
]
}
},
{
"id":"ICYSDS",
"name":"ISC Cysteine desulfuration",
"metabolites":{
"ala__L_c":1.0,
"cys__L_c":-1.0,
"iscs_c":-1.0,
"iscssh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0992 or Gmet_0872",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"ICYSDS"
]
},
"annotation":{
"bigg.reaction":[
"ICYSDS"
],
"metanetx.reaction":[
"MNXR100790"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPGPPDP",
"name":"Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase",
"metabolites":{
"gdp_c":1.0,
"h2o_c":-1.0,
"ppgpp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2399",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"PPGPPDP"
]
},
"annotation":{
"bigg.reaction":[
"PPGPPDP"
],
"biocyc":[
"META:PPGPPSYN-RXN"
],
"ec-code":[
"3.1.7.2"
],
"kegg.reaction":[
"R00336"
],
"metanetx.reaction":[
"MNXR103109"
],
"rhea":[
"14254",
"14255",
"14256",
"14253"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00242"
]
}
},
{
"id":"PPK2",
"name":"Polyphosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ppi_c":-1.0,
"pppi_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1092 or Gmet_0133",
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"PPK2r"
]
},
"annotation":{
"bigg.reaction":[
"PPK2"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPAAFDOR",
"name":"Propanal:ferredoxin oxidoreductase",
"metabolites":{
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h2o_c":-1.0,
"h_c":3.0,
"ppa_c":1.0,
"ppal_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1045",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PPAAFDOR"
]
},
"annotation":{
"bigg.reaction":[
"PPAAFDOR"
],
"metanetx.reaction":[
"MNXR103070"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPAKr",
"name":"Propionate kinase",
"metabolites":{
"adp_c":-1.0,
"atp_c":1.0,
"ppa_c":1.0,
"ppap_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1034 or Gmet_0149",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PPAKr"
]
},
"annotation":{
"bigg.reaction":[
"PPAKr"
],
"ec-code":[
"2.7.2.15"
],
"metanetx.reaction":[
"MNXR95897"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPA_1pp",
"name":"Inorganic diphosphatase (one proton translocation) (periplasm)",
"metabolites":{
"h2o_c":-1.0,
"h_p":1.0,
"pi_c":2.0,
"ppi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3239",
"objective_coefficient":-0.00461231735439892,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PPA_1pp"
]
},
"annotation":{
"bigg.reaction":[
"PPA_1pp"
],
"biocyc":[
"META:INORGPYROPHOSPHAT-RXN"
],
"ec-code":[
"3.6.1.1"
],
"kegg.reaction":[
"R00004"
],
"metanetx.reaction":[
"MNXR100808"
],
"reactome.reaction":[
"R-GGA-6788912",
"R-HSA-449937",
"R-RNO-449937",
"R-DME-449937",
"R-RNO-71732",
"R-SSC-449937",
"R-HSA-71732",
"R-SCE-449937",
"R-SSC-71732",
"R-GGA-71732",
"R-DRE-6788912",
"R-TGU-6788912",
"R-DRE-71732",
"R-PFA-71732",
"R-BTA-6788912",
"R-CEL-71732",
"R-SPO-71732",
"R-MMU-449937",
"R-ATH-449937",
"R-CFA-6788912",
"R-DRE-449937",
"R-MMU-71732",
"R-OSA-71732",
"R-XTR-449937",
"R-CFA-71732",
"R-ATH-71732",
"R-SSC-6788912",
"R-CEL-449937",
"R-OSA-449937",
"R-BTA-449937",
"R-XTR-6788912",
"R-GGA-449937",
"R-BTA-71732",
"R-DDI-71732",
"R-HSA-6788912",
"R-SCE-71732",
"R-SPO-449937",
"R-TGU-449937",
"R-CEL-6788912",
"R-MMU-6788912",
"R-PFA-449937",
"R-TGU-71732",
"R-XTR-71732",
"R-CFA-449937",
"R-RNO-6788912",
"R-DME-71732",
"R-DDI-449937"
],
"rhea":[
"24577",
"24576",
"24579",
"24578"
],
"sabiork":[
"76"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn00001",
"rxn11226"
]
}
},
{
"id":"PPK",
"name":"Polyphosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"pi_c":-1.0,
"ppi_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0133 or Gmet_1092",
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"PPKr"
]
},
"annotation":{
"bigg.reaction":[
"PPK"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPM",
"name":"Phosphopentomutase",
"metabolites":{
"r1p_c":-1.0,
"r5p_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0990 or Gmet_0135",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PPM"
]
},
"annotation":{
"bigg.reaction":[
"PPM"
],
"biocyc":[
"META:RXN-14456"
],
"ec-code":[
"5.4.2.7",
"5.4.2.2",
"5.4.2"
],
"metanetx.reaction":[
"MNXR103115"
],
"sabiork":[
"2261"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPNCL",
"name":"Phosphopantothenate-cysteine ligase",
"metabolites":{
"4ppan_c":-1.0,
"4ppcys_c":1.0,
"cdp_c":1.0,
"ctp_c":-1.0,
"cys__L_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2673",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPNCL"
]
},
"annotation":{
"bigg.reaction":[
"PPNCL"
],
"ec-code":[
"6.3.2.5"
],
"metanetx.reaction":[
"MNXR103118"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10003"
]
}
},
{
"id":"PPAt2pp",
"name":"H+/Propionate symporter (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ppa_c":1.0,
"ppa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PPAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"PPAt2pp"
],
"metanetx.reaction":[
"MNXR103092"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PPAt4pp",
"name":"Na+/Propionate symporter (periplasm)",
"metabolites":{
"na1_c":1.0,
"na1_p":-1.0,
"ppa_c":1.0,
"ppa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"objective_coefficient":-0.00197670743759953,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PPAt4pp"
]
},
"annotation":{
"bigg.reaction":[
"PPAt4pp"
],
"metanetx.reaction":[
"MNXR103093"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PPAtex",
"name":"Propionate transport via diffusion",
"metabolites":{
"ppa_e":-1.0,
"ppa_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"PPAtex"
]
},
"annotation":{
"bigg.reaction":[
"PPAtex"
],
"metanetx.reaction":[
"MNXR103094"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PPBNGS",
"name":"Porphobilinogen synthase",
"metabolites":{
"5aop_c":-2.0,
"h2o_c":2.0,
"h_c":1.0,
"ppbng_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0189",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPBNGS"
]
},
"annotation":{
"bigg.reaction":[
"PPBNGS"
],
"biocyc":[
"META:PORPHOBILSYNTH-RXN"
],
"ec-code":[
"4.2.1.24"
],
"kegg.reaction":[
"R00036"
],
"metanetx.reaction":[
"MNXR103095"
],
"reactome.reaction":[
"R-GGA-421472",
"R-DME-189439",
"R-SCE-189439",
"R-RNO-189439",
"R-HSA-189439",
"R-BTA-189439",
"R-MMU-189439",
"R-TGU-189439",
"R-OSA-189439",
"R-DDI-189439",
"R-ATH-189439",
"R-DRE-189439",
"R-PFA-189439",
"R-XTR-189439",
"R-GGA-189439",
"R-CFA-189439",
"R-SPO-189439"
],
"rhea":[
"24064",
"24066",
"24067",
"24065"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00029"
]
}
},
{
"id":"PPND",
"name":"Prephenate dehydrogenase",
"metabolites":{
"34hpp_c":1.0,
"co2_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pphn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0863",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PPND"
]
},
"annotation":{
"bigg.reaction":[
"PPND"
],
"biocyc":[
"META:PREPHENATEDEHYDROG-RXN"
],
"ec-code":[
"1.3.1.12"
],
"kegg.reaction":[
"R01728"
],
"metanetx.reaction":[
"MNXR103121"
],
"rhea":[
"13872",
"13870",
"13869",
"13871"
],
"sabiork":[
"1839"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01268"
]
}
},
{
"id":"PPNDH",
"name":"Prephenate dehydratase",
"metabolites":{
"co2_c":1.0,
"h2o_c":1.0,
"h_c":-1.0,
"phpyr_c":1.0,
"pphn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0862 or Gmet_1955",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PPNDH"
]
},
"annotation":{
"bigg.reaction":[
"PPNDH"
],
"biocyc":[
"META:PREPHENATEDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.91",
"4.2.1.51"
],
"kegg.reaction":[
"R01373"
],
"metanetx.reaction":[
"MNXR126086"
],
"rhea":[
"21648",
"21649",
"21650",
"21651"
],
"sabiork":[
"1575"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01000"
]
}
},
{
"id":"PPC",
"name":"Phosphoenolpyruvate carboxylase",
"metabolites":{
"co2_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"oaa_c":1.0,
"pep_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0304",
"objective_coefficient":5.63785129692462e-18,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PPC"
]
},
"annotation":{
"bigg.reaction":[
"PPC"
],
"ec-code":[
"4.1.1.31"
],
"kegg.reaction":[
"R00345"
],
"metanetx.reaction":[
"MNXR103096"
],
"rhea":[
"23073",
"23072",
"23075",
"23074"
],
"sabiork":[
"150"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00251"
]
}
},
{
"id":"IG3PS",
"name":"Imidazole-glycerol-3-phosphate synthase",
"metabolites":{
"aicar_c":1.0,
"eig3p_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h_c":1.0,
"prlp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0387 and Gmet_0389",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"IG3PS"
]
},
"annotation":{
"bigg.reaction":[
"IG3PS"
],
"biocyc":[
"META:GLUTAMIDOTRANS-RXN"
],
"ec-code":[
"4.1.3.-",
"4.3.2.M2",
"2.4.2.-"
],
"kegg.reaction":[
"R04558"
],
"metanetx.reaction":[
"MNXR100811"
],
"rhea":[
"24796",
"24794",
"24793",
"24795"
],
"sabiork":[
"4234"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03135"
]
}
},
{
"id":"PPCCYTC1pp",
"name":"Periplasmic Cytochromes Intracellular cytochrome electron transfer (proton coupled, 1 H+ in)",
"metabolites":{
"ficytC_c":1.0,
"focytC_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ppco_p":-1.0,
"ppcr_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3091 and Gmet_2902",
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"PPCCYTC1pp"
]
},
"annotation":{
"bigg.reaction":[
"PPCCYTC1pp"
],
"metanetx.reaction":[
"MNXR138713"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PPCDC",
"name":"Phosphopantothenoylcysteine decarboxylase",
"metabolites":{
"4ppcys_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"pan4p_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2673",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPCDC"
]
},
"annotation":{
"bigg.reaction":[
"PPCDC"
],
"biocyc":[
"META:P-PANTOCYSDECARB-RXN"
],
"ec-code":[
"4.1.1.36"
],
"kegg.reaction":[
"R03269"
],
"metanetx.reaction":[
"MNXR103098"
],
"reactome.reaction":[
"R-BTA-196840",
"R-HSA-196840",
"R-SSC-196840",
"R-CFA-196840",
"R-GGA-196840",
"R-XTR-196840",
"R-ATH-196840",
"R-SCE-196840",
"R-PFA-196840",
"R-MMU-196840",
"R-OSA-196840",
"R-DRE-196840",
"R-DDI-196840",
"R-DME-196840",
"R-TGU-196840",
"R-RNO-196840",
"R-CEL-196840"
],
"rhea":[
"16793",
"16796",
"16794",
"16795"
],
"sabiork":[
"3090"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02341"
]
}
},
{
"id":"PPOHt2pp",
"name":"Propanol transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ppoh_c":1.0,
"ppoh_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PPOHt2pp"
]
},
"annotation":{
"bigg.reaction":[
"PPOHt2pp"
],
"metanetx.reaction":[
"MNXR103124"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PPOHtex",
"name":"Propanol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ppoh_e":-1.0,
"ppoh_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"PPOHtex"
]
},
"annotation":{
"bigg.reaction":[
"PPOHtex"
],
"metanetx.reaction":[
"MNXR103125"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PPPGO2",
"name":"Protoporphyrinogen oxidase (anaerobic, menaquinone)",
"metabolites":{
"mql8_c":3.0,
"mqn8_c":-3.0,
"ppp9_c":1.0,
"pppg9_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2953",
"objective_coefficient":-0.0177903669383961,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPPGO2"
]
},
"annotation":{
"bigg.reaction":[
"PPPGO2"
],
"metanetx.reaction":[
"MNXR103129"
],
"rhea":[
"30575",
"30576",
"30578",
"30577"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPPGO4",
"name":"Protoporphyrinogen oxidase (anaerobic, FAD)",
"metabolites":{
"fad_c":-3.0,
"fadh2_c":3.0,
"ppp9_c":1.0,
"pppg9_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3551",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPPGO4"
]
},
"annotation":{
"bigg.reaction":[
"PPPGO4"
],
"metanetx.reaction":[
"MNXR103131"
],
"sbo":"SBO:0000176"
}
},
{
"id":"IGPDH",
"name":"Imidazoleglycerol-phosphate dehydratase",
"metabolites":{
"eig3p_c":-1.0,
"h2o_c":1.0,
"imacp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0386",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"IGPDH"
]
},
"annotation":{
"bigg.reaction":[
"IGPDH"
],
"biocyc":[
"META:IMIDPHOSDEHYD-RXN"
],
"ec-code":[
"4.2.1.19"
],
"kegg.reaction":[
"R03457"
],
"metanetx.reaction":[
"MNXR100813"
],
"rhea":[
"11041",
"11043",
"11040",
"11042"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02473"
]
}
},
{
"id":"PPS",
"name":"Phosphoenolpyruvate synthase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pep_c":1.0,
"pi_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0770",
"objective_coefficient":-0.00658902479199841,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PPS"
]
},
"annotation":{
"bigg.reaction":[
"PPS"
],
"biocyc":[
"META:PEPSYNTH-RXN"
],
"ec-code":[
"2.7.9.2"
],
"kegg.reaction":[
"R00199"
],
"metanetx.reaction":[
"MNXR103140"
],
"rhea":[
"11364",
"11367",
"11366",
"11365"
],
"sabiork":[
"148"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00147"
]
}
},
{
"id":"IGPS",
"name":"Indole-3-glycerol-phosphate synthase",
"metabolites":{
"2cpr5p_c":-1.0,
"3ig3p_c":1.0,
"co2_c":1.0,
"h2o_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2494",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"IGPS"
]
},
"annotation":{
"bigg.reaction":[
"IGPS"
],
"biocyc":[
"META:IGPSYN-RXN"
],
"ec-code":[
"4.1.1.48"
],
"kegg.reaction":[
"R03508"
],
"metanetx.reaction":[
"MNXR100814"
],
"rhea":[
"23476",
"23479",
"23477",
"23478"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02507"
]
}
},
{
"id":"PRAGSr",
"name":"Phosphoribosylglycinamide synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gar_c":1.0,
"gly_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"pram_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2904",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"PRAGS"
]
},
"annotation":{
"bigg.reaction":[
"PRAGSr"
],
"biocyc":[
"META:GLYRIBONUCSYN-RXN"
],
"ec-code":[
"6.3.4.13"
],
"kegg.reaction":[
"R04144"
],
"metanetx.reaction":[
"MNXR103139"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02895"
]
}
},
{
"id":"RBFSb",
"name":"Riboflavin synthase",
"metabolites":{
"4r5au_c":1.0,
"dmlz_c":-2.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1625 and Gmet_1627",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"RBFSb"
]
},
"annotation":{
"bigg.reaction":[
"RBFSb"
],
"biocyc":[
"META:RIBOFLAVIN-SYN-RXN"
],
"ec-code":[
"2.5.1.9"
],
"kegg.reaction":[
"R00066"
],
"metanetx.reaction":[
"MNXR103430"
],
"rhea":[
"20773",
"20774",
"20775",
"20772"
],
"sabiork":[
"653"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00048"
]
}
},
{
"id":"RBK",
"name":"Ribokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"r5p_c":1.0,
"rib__D_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2812",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"RBK"
]
},
"annotation":{
"bigg.reaction":[
"RBK"
],
"ec-code":[
"2.7.1.15"
],
"metanetx.reaction":[
"MNXR103431"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RDXR",
"name":"Rubredoxin oxidoreductase",
"metabolites":{
"h_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"rdxo_c":-2.0,
"rdxr_c":2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_3171 and Gmet_1148) or (Gmet_3241 and Gmet_1148)",
"objective_coefficient":-0.00790682975039814,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"RDXR"
]
},
"annotation":{
"bigg.reaction":[
"RDXR"
],
"metanetx.reaction":[
"MNXR103444"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PRAIi",
"name":"Phosphoribosylanthranilate isomerase (irreversible)",
"metabolites":{
"2cpr5p_c":1.0,
"pran_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2492",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PRAI"
]
},
"annotation":{
"bigg.reaction":[
"PRAIi"
],
"biocyc":[
"META:PRAISOM-RXN"
],
"ec-code":[
"5.3.1.24"
],
"kegg.reaction":[
"R03509"
],
"metanetx.reaction":[
"MNXR103156"
],
"rhea":[
"21543",
"21542",
"21540",
"21541"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02508"
]
}
},
{
"id":"ILETA",
"name":"Isoleucine transaminase",
"metabolites":{
"3mop_c":1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"ile__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2853",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ILETA"
]
},
"annotation":{
"bigg.reaction":[
"ILETA"
],
"biocyc":[
"META:BRANCHED-CHAINAMINOTRANSFERILEU-RXN"
],
"ec-code":[
"2.6.1.42"
],
"kegg.reaction":[
"R02199"
],
"metanetx.reaction":[
"MNXR96228"
],
"rhea":[
"24803",
"24802",
"24804",
"24801"
],
"sabiork":[
"9086"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01575"
]
}
},
{
"id":"PRAIS",
"name":"Phosphoribosylaminoimidazole synthase",
"metabolites":{
"adp_c":1.0,
"air_c":1.0,
"atp_c":-1.0,
"fpram_c":-1.0,
"h_c":2.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1844",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"PRAIS"
]
},
"annotation":{
"bigg.reaction":[
"PRAIS"
],
"ec-code":[
"6.3.3.1"
],
"metanetx.reaction":[
"MNXR138720"
],
"rhea":[
"23033",
"23032",
"23034",
"23035"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RNDR1",
"name":"Ribonucleoside-diphosphate reductase (ADP)",
"metabolites":{
"adp_c":-1.0,
"dadp_c":1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1297",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"RNDR1"
]
},
"annotation":{
"bigg.reaction":[
"RNDR1"
],
"biocyc":[
"META:ADPREDUCT-RXN"
],
"ec-code":[
"1.17.4.1"
],
"kegg.reaction":[
"R02017"
],
"metanetx.reaction":[
"MNXR104060"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05231"
]
}
},
{
"id":"RNDR2",
"name":"Ribonucleoside-diphosphate reductase (GDP)",
"metabolites":{
"dgdp_c":1.0,
"gdp_c":-1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1297",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"RNDR2"
]
},
"annotation":{
"bigg.reaction":[
"RNDR2"
],
"biocyc":[
"META:GDPREDUCT-RXN"
],
"ec-code":[
"1.17.4.1"
],
"kegg.reaction":[
"R02019"
],
"metanetx.reaction":[
"MNXR104062"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05233"
]
}
},
{
"id":"ILETRS",
"name":"Isoleucyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ile__L_c":-1.0,
"iletrna_c":1.0,
"ppi_c":1.0,
"trnaile_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0351",
"objective_coefficient":-0.0579834181695853,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"ILETRS"
]
},
"annotation":{
"bigg.reaction":[
"ILETRS"
],
"ec-code":[
"6.1.1.5"
],
"kegg.reaction":[
"R03656"
],
"metanetx.reaction":[
"MNXR100820"
],
"reactome.reaction":[
"R-HSA-380176",
"R-HSA-379893"
],
"sabiork":[
"413"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06440"
]
}
},
{
"id":"RNDR3",
"name":"Ribonucleoside-diphosphate reductase (CDP)",
"metabolites":{
"cdp_c":-1.0,
"dcdp_c":1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1297",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"RNDR3"
]
},
"annotation":{
"bigg.reaction":[
"RNDR3"
],
"biocyc":[
"META:CDPREDUCT-RXN"
],
"ec-code":[
"1.17.4.1"
],
"kegg.reaction":[
"R02024"
],
"metanetx.reaction":[
"MNXR104064"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06076"
]
}
},
{
"id":"RNDR4",
"name":"Ribonucleoside-diphosphate reductase (UDP)",
"metabolites":{
"dudp_c":1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0,
"udp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1297",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"RNDR4"
]
},
"annotation":{
"bigg.reaction":[
"RNDR4"
],
"biocyc":[
"META:UDPREDUCT-RXN"
],
"ec-code":[
"1.17.4.1"
],
"kegg.reaction":[
"R02018"
],
"metanetx.reaction":[
"MNXR104066"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06075"
]
}
},
{
"id":"PRAMPC",
"name":"Phosphoribosyl-AMP cyclohydrolase",
"metabolites":{
"h2o_c":-1.0,
"prbamp_c":-1.0,
"prfp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1897",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PRAMPC"
]
},
"annotation":{
"bigg.reaction":[
"PRAMPC"
],
"biocyc":[
"META:HISTCYCLOHYD-RXN"
],
"ec-code":[
"3.5.4.19"
],
"kegg.reaction":[
"R04037"
],
"metanetx.reaction":[
"MNXR103154"
],
"rhea":[
"20049",
"20050",
"20051",
"20052"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02835"
]
}
},
{
"id":"PRASCSi",
"name":"Phosphoribosylaminoimidazolesuccinocarboxamide synthase",
"metabolites":{
"25aics_c":1.0,
"5aizc_c":-1.0,
"adp_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0916",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"PRASCS"
]
},
"annotation":{
"bigg.reaction":[
"PRASCSi"
],
"biocyc":[
"META:SAICARSYN-RXN"
],
"ec-code":[
"6.3.2.6"
],
"kegg.reaction":[
"R04591"
],
"metanetx.reaction":[
"MNXR108987"
],
"reactome.reaction":[
"R-TGU-73805",
"R-DME-73805",
"R-GGA-419223",
"R-GGA-73805",
"R-CEL-73805",
"R-HSA-73805",
"R-BTA-73805",
"R-XTR-73805",
"R-DRE-73805",
"R-RNO-73805",
"R-CFA-73805",
"R-MMU-73805",
"R-SSC-73805"
],
"rhea":[
"22631",
"22628",
"22629",
"22630"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ILEabcpp",
"name":"L-isoleucine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ile__L_c":1.0,
"ile__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1819 and Gmet_1820 and Gmet_1821 and Gmet_1822 and Gmet_1823",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ILEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ILEabcpp"
],
"biocyc":[
"META:ABC-15-RXN"
],
"metanetx.reaction":[
"MNXR100821"
],
"rhea":[
"29820#1",
"29819#1",
"29821#1",
"29822#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08745",
"rxn05179"
]
}
},
{
"id":"PRATPP",
"name":"Phosphoribosyl-ATP pyrophosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0,
"prbamp_c":1.0,
"prbatp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1897 or Gmet_0390",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PRATPP"
]
},
"annotation":{
"bigg.reaction":[
"PRATPP"
],
"biocyc":[
"META:HISTPRATPHYD-RXN"
],
"ec-code":[
"3.6.1.31"
],
"kegg.reaction":[
"R04035"
],
"metanetx.reaction":[
"MNXR103155"
],
"rhea":[
"22829",
"22828",
"22830",
"22831"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02834"
]
}
},
{
"id":"PRFGS",
"name":"Phosphoribosylformylglycinamidine synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fgam_c":-1.0,
"fpram_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1940 and Gmet_1941",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"PRFGS"
]
},
"annotation":{
"bigg.reaction":[
"PRFGS"
],
"ec-code":[
"6.3.5.3"
],
"metanetx.reaction":[
"MNXR138721"
],
"reactome.reaction":[
"R-DME-73812",
"R-DDI-73812",
"R-DRE-73812",
"R-GGA-73812",
"R-MMU-73812",
"R-RNO-73812",
"R-SCE-73812",
"R-SSC-73812",
"R-XTR-73812",
"R-HSA-73812",
"R-BTA-73812",
"R-ATH-73812",
"R-GGA-419144",
"R-CEL-73812",
"R-CFA-73812",
"R-SPO-73812",
"R-OSA-73812"
],
"rhea":[
"17132",
"17129",
"17131",
"17130"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PRMICI",
"name":"1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase",
"metabolites":{
"prfp_c":-1.0,
"prlp_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0388",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PRMICI"
]
},
"annotation":{
"bigg.reaction":[
"PRMICI"
],
"biocyc":[
"META:PRIBFAICARPISOM-RXN"
],
"ec-code":[
"5.3.1.16"
],
"kegg.reaction":[
"R04640"
],
"metanetx.reaction":[
"MNXR103169"
],
"rhea":[
"15471",
"15472",
"15469",
"15470"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03175"
]
}
},
{
"id":"PRO1y",
"name":"Proline oxidase (L-proline, NADP)",
"metabolites":{
"1pyr5c_c":1.0,
"h_c":2.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"pro__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3512",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PRO1y"
]
},
"annotation":{
"bigg.reaction":[
"PRO1y"
],
"ec-code":[
"1.5.1.2"
],
"kegg.reaction":[
"R01251"
],
"metanetx.reaction":[
"MNXR102302"
],
"reactome.reaction":[
"R-DDI-6783955",
"R-DRE-6783955",
"R-TGU-6783955",
"R-PFA-6783955",
"R-CEL-6783955",
"R-MMU-6783955",
"R-RNO-6783955",
"R-HSA-6783955",
"R-SCE-6783955",
"R-ATH-6783955",
"R-SPO-6783955",
"R-OSA-6783955",
"R-CFA-6783955",
"R-DME-6783955",
"R-GGA-6783955",
"R-BTA-6783955"
],
"rhea":[
"14111",
"14112",
"14109",
"14110"
],
"sabiork":[
"1470"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00931"
]
}
},
{
"id":"ROO",
"name":"Rubredoxin oxygen reductase",
"metabolites":{
"h2o_c":2.0,
"h_c":-4.0,
"o2_c":-1.0,
"rdxo_c":4.0,
"rdxr_c":-4.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_3171 and Gmet_3243) or (Gmet_3241 and Gmet_3243)",
"objective_coefficient":-0.0158136595007962,
"subsystem":"Energy Metabolism",
"notes":{
"original_bigg_ids":[
"ROO"
]
},
"annotation":{
"bigg.reaction":[
"ROO"
],
"metanetx.reaction":[
"MNXR104082"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RPE",
"name":"Ribulose 5-phosphate 3-epimerase",
"metabolites":{
"ru5p__D_c":-1.0,
"xu5p__D_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0067",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"RPE"
]
},
"annotation":{
"bigg.reaction":[
"RPE"
],
"biocyc":[
"META:RIBULP3EPIM-RXN"
],
"ec-code":[
"5.1.3.1"
],
"kegg.reaction":[
"R01529"
],
"metanetx.reaction":[
"MNXR104083"
],
"reactome.reaction":[
"R-SPO-71303",
"R-CFA-199803",
"R-ATH-71303",
"R-SCE-71303",
"R-CFA-71303",
"R-DME-199803",
"R-XTR-199803",
"R-SSC-199803",
"R-GGA-199803",
"R-TGU-71303",
"R-OSA-199803",
"R-SSC-71303",
"R-MMU-71303",
"R-OSA-71303",
"R-HSA-71303",
"R-MMU-199803",
"R-XTR-71303",
"R-SPO-199803",
"R-SCE-199803",
"R-DDI-71303",
"R-RNO-71303",
"R-DME-71303",
"R-HSA-199803",
"R-DRE-71303",
"R-PFA-199803",
"R-CEL-199803",
"R-RNO-199803",
"R-PFA-71303",
"R-CEL-71303",
"R-TGU-199803",
"R-GGA-71303",
"R-DDI-199803",
"R-BTA-71303",
"R-ATH-199803",
"R-DRE-199803",
"R-BTA-199803"
],
"rhea":[
"13677",
"13680",
"13678",
"13679"
],
"sabiork":[
"62"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01116"
]
}
},
{
"id":"RPI",
"name":"Ribose-5-phosphate isomerase",
"metabolites":{
"r5p_c":-1.0,
"ru5p__D_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2621 or Gmet_1604",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"RPI"
]
},
"annotation":{
"bigg.reaction":[
"RPI"
],
"ec-code":[
"5.3.1.6"
],
"metanetx.reaction":[
"MNXR104084"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RZ5PP",
"name":"Alpha-ribazole 5-phosphate phosphatase",
"metabolites":{
"5prdmbz_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0,
"rdmbzi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0469",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"RZ5PP"
]
},
"annotation":{
"bigg.reaction":[
"RZ5PP"
],
"biocyc":[
"META:RXN-16788",
"META:RIBAZOLEPHOSPHAT-RXN"
],
"ec-code":[
"3.1.3.73"
],
"kegg.reaction":[
"R04594"
],
"metanetx.reaction":[
"MNXR104116"
],
"rhea":[
"24457",
"24456",
"24459",
"24458"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03150"
]
}
},
{
"id":"S7PI",
"name":"Sedoheptulose 7-phosphate isomerase",
"metabolites":{
"gmhep7p_c":1.0,
"s7p_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0920",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"S7PIr"
]
},
"annotation":{
"bigg.reaction":[
"S7PI"
],
"biocyc":[
"META:RXN0-4301"
],
"ec-code":[
"5.3.1.28"
],
"kegg.reaction":[
"R05645",
"R09768"
],
"metanetx.reaction":[
"MNXR139387"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13947",
"rxn03917",
"rxn13937"
]
}
},
{
"id":"SADT2",
"name":"Sulfate adenyltransferase",
"metabolites":{
"aps_c":1.0,
"atp_c":-1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0,
"ppi_c":1.0,
"so4_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2859 and Gmet_2860",
"objective_coefficient":-0.0171314644591959,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"SADT2"
]
},
"annotation":{
"bigg.reaction":[
"SADT2"
],
"ec-code":[
"2.7.7.4"
],
"metanetx.reaction":[
"MNXR104241"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11356",
"rxn09240"
]
}
},
{
"id":"SELCYSLY3",
"name":"Selenocysteine lyase (nadph)",
"metabolites":{
"ala__L_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"selcys_c":-1.0,
"seln_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2006 or Gmet_1300",
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"SELCYSLY3"
]
},
"annotation":{
"bigg.reaction":[
"SELCYSLY3"
],
"metanetx.reaction":[
"MNXR104313"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PROTRS",
"name":"Prolyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"pro__L_c":-1.0,
"protrna_c":1.0,
"trnapro_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1354",
"objective_coefficient":-0.0586423206487855,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PROTRS"
]
},
"annotation":{
"bigg.reaction":[
"PROTRS"
],
"ec-code":[
"6.1.1.15"
],
"kegg.reaction":[
"R03661"
],
"metanetx.reaction":[
"MNXR103208"
],
"reactome.reaction":[
"R-HSA-380198",
"R-HSA-379865"
],
"sabiork":[
"404"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06445"
]
}
},
{
"id":"PRPPS",
"name":"Phosphoribosylpyrophosphate synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"prpp_c":1.0,
"r5p_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2848",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PRPPS"
]
},
"annotation":{
"bigg.reaction":[
"PRPPS"
],
"ec-code":[
"2.7.6.1"
],
"metanetx.reaction":[
"MNXR103215"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PS120abcpp",
"name":"Phosphatidylserine transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ps120_c":-1.0,
"ps120_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PS120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PS120abcpp"
],
"metanetx.reaction":[
"MNXR103218"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PS140abcpp",
"name":"Phosphatidylserine transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ps140_c":-1.0,
"ps140_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.361078558601511,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PS140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PS140abcpp"
],
"metanetx.reaction":[
"MNXR103219"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SELCYSS",
"name":"Selenocysteine synthase",
"metabolites":{
"h_c":1.0,
"pi_c":1.0,
"sectrna_c":1.0,
"selnp_c":-1.0,
"sertrna_sec_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0061",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"SELCYSS"
]
},
"annotation":{
"bigg.reaction":[
"SELCYSS"
],
"ec-code":[
"2.9.1.1"
],
"kegg.reaction":[
"R08219"
],
"metanetx.reaction":[
"MNXR104314"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09244"
]
}
},
{
"id":"PS141abcpp",
"name":"Phosphatidylserine transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ps141_c":-1.0,
"ps141_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PS141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PS141abcpp"
],
"metanetx.reaction":[
"MNXR103220"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SELNPS",
"name":"Selenophosphate synthase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0,
"seln_c":-1.0,
"selnp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2907",
"objective_coefficient":-0.0112013421463973,
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"SELNPS"
]
},
"annotation":{
"bigg.reaction":[
"SELNPS"
],
"biocyc":[
"META:2.7.9.3-RXN"
],
"ec-code":[
"2.7.9.3"
],
"kegg.reaction":[
"R03595"
],
"metanetx.reaction":[
"MNXR104322"
],
"rhea":[
"18740",
"18739",
"18737",
"18738"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02569"
]
}
},
{
"id":"ILEtex",
"name":"L-isoleucine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ile__L_e":-1.0,
"ile__L_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"ILEtex"
]
},
"annotation":{
"bigg.reaction":[
"ILEtex"
],
"metanetx.reaction":[
"MNXR100824"
],
"sabiork":[
"13467"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08747",
"rxn13323",
"rxn10933"
]
}
},
{
"id":"SERAT",
"name":"Serine O-acetyltransferase",
"metabolites":{
"accoa_c":-1.0,
"acser_c":1.0,
"coa_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0870",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"SERAT"
]
},
"annotation":{
"bigg.reaction":[
"SERAT"
],
"biocyc":[
"META:SERINE-O-ACETTRAN-RXN"
],
"ec-code":[
"2.3.1.30"
],
"kegg.reaction":[
"R00586"
],
"metanetx.reaction":[
"MNXR104275"
],
"reactome.reaction":[
"R-MTU-936615"
],
"rhea":[
"24560",
"24563",
"24562",
"24561"
],
"sabiork":[
"986"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00423"
]
}
},
{
"id":"SERD_L",
"name":"L-serine deaminase",
"metabolites":{
"nh4_c":1.0,
"pyr_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3072",
"objective_coefficient":-0.00658902479199893,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"SERD_L"
]
},
"annotation":{
"bigg.reaction":[
"SERD_L"
],
"biocyc":[
"META:4.3.1.17-RXN"
],
"ec-code":[
"4.3.1.15",
"4.3.1.19",
"4.3.1.17"
],
"kegg.reaction":[
"R00220",
"R00223"
],
"metanetx.reaction":[
"MNXR104339"
],
"rhea":[
"19170",
"19169",
"19171",
"19172"
],
"sabiork":[
"745"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00165"
]
}
},
{
"id":"SERTRS",
"name":"Seryl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"ser__L_c":-1.0,
"sertrna_c":1.0,
"trnaser_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3528",
"objective_coefficient":-0.0316273190015927,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"SERTRS"
]
},
"annotation":{
"bigg.reaction":[
"SERTRS"
],
"ec-code":[
"6.1.1.11"
],
"kegg.reaction":[
"R03662"
],
"metanetx.reaction":[
"MNXR104350"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06446"
]
}
},
{
"id":"PS160abcpp",
"name":"Phosphatidylserine transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ps160_c":-1.0,
"ps160_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.401930512311901,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PS160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PS160abcpp"
],
"metanetx.reaction":[
"MNXR103221"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PS161abcpp",
"name":"Phosphatidylserine transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ps161_c":-1.0,
"ps161_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.394023682561503,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PS161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PS161abcpp"
],
"metanetx.reaction":[
"MNXR103222"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PS180abcpp",
"name":"Phosphatidylserine transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ps180_c":-1.0,
"ps180_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PS180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PS180abcpp"
],
"metanetx.reaction":[
"MNXR103223"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PS181abcpp",
"name":"Phosphatidylserine transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ps181_c":-1.0,
"ps181_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2349",
"objective_coefficient":-0.448053685855889,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PS181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PS181abcpp"
],
"metanetx.reaction":[
"MNXR103224"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PSCVT",
"name":"3-phosphoshikimate 1-carboxyvinyltransferase",
"metabolites":{
"3psme_c":1.0,
"pep_c":-1.0,
"pi_c":1.0,
"skm5p_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0864",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PSCVT"
]
},
"annotation":{
"bigg.reaction":[
"PSCVT"
],
"biocyc":[
"META:2.5.1.19-RXN"
],
"ec-code":[
"2.5.1.19"
],
"kegg.reaction":[
"R03460"
],
"metanetx.reaction":[
"MNXR103226"
],
"reactome.reaction":[
"R-MTU-964886"
],
"rhea":[
"21259",
"21257",
"21256",
"21258"
],
"sabiork":[
"3254"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02476"
]
}
},
{
"id":"SHCHCC",
"name":"Sirohydrochlorin cobaltochelatase",
"metabolites":{
"cobalt2_c":-1.0,
"copre2_c":1.0,
"dscl_c":-1.0,
"h_c":3.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0476",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"SHCHCC"
]
},
"annotation":{
"bigg.reaction":[
"SHCHCC"
],
"biocyc":[
"META:RXN-8759"
],
"ec-code":[
"4.99.1.3"
],
"metanetx.reaction":[
"MNXR97796"
],
"rhea":[
"26269",
"26270",
"26272",
"26271"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10600"
]
}
},
{
"id":"SHCHD2",
"name":"Sirohydrochlorin dehydrogenase (NAD)",
"metabolites":{
"dscl_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"scl_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3231",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"SHCHD2"
]
},
"annotation":{
"bigg.reaction":[
"SHCHD2"
],
"biocyc":[
"META:DIMETHUROPORDEHYDROG-RXN"
],
"ec-code":[
"1.3.1.76"
],
"kegg.reaction":[
"R03947"
],
"metanetx.reaction":[
"MNXR104373"
],
"rhea":[
"15613",
"15614",
"15615",
"15616"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02774"
]
}
},
{
"id":"IMPC",
"name":"IMP cyclohydrolase",
"metabolites":{
"fprica_c":1.0,
"h2o_c":-1.0,
"imp_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2905",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"IMPC"
]
},
"annotation":{
"bigg.reaction":[
"IMPC"
],
"biocyc":[
"META:IMPCYCLOHYDROLASE-RXN"
],
"ec-code":[
"2.1.2.3",
"3.5.4.10"
],
"kegg.reaction":[
"R01127"
],
"metanetx.reaction":[
"MNXR100783"
],
"reactome.reaction":[
"R-SCE-73797",
"R-TGU-73797",
"R-GGA-419253",
"R-OSA-73797",
"R-GGA-73797",
"R-XTR-73797",
"R-RNO-73797",
"R-DDI-73797",
"R-SPO-73797",
"R-HSA-73797",
"R-BTA-73797",
"R-CFA-73797",
"R-MMU-73797",
"R-SSC-73797",
"R-ATH-73797",
"R-DME-73797",
"R-DRE-73797"
],
"rhea":[
"18446",
"18445",
"18447",
"18448"
],
"sabiork":[
"123"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00832"
]
}
},
{
"id":"SHCHF",
"name":"Sirohydrochlorin ferrochelatase",
"metabolites":{
"fe2_c":-1.0,
"h_c":3.0,
"scl_c":-1.0,
"sheme_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3231",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"SHCHF"
]
},
"annotation":{
"bigg.reaction":[
"SHCHF"
],
"biocyc":[
"META:SIROHEME-FERROCHELAT-RXN"
],
"ec-code":[
"4.99.1.4"
],
"kegg.reaction":[
"R02864"
],
"metanetx.reaction":[
"MNXR104375"
],
"rhea":[
"24360",
"24361",
"24362",
"24363"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02056"
]
}
},
{
"id":"SHK3Dr",
"name":"Shikimate dehydrogenase",
"metabolites":{
"3dhsk_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"skm_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1392",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"SHK3Dr"
]
},
"annotation":{
"bigg.reaction":[
"SHK3Dr"
],
"biocyc":[
"META:SHIKIMATE-5-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.25",
"1.1.1.282"
],
"kegg.reaction":[
"R02413"
],
"metanetx.reaction":[
"MNXR104378"
],
"reactome.reaction":[
"R-MTU-964842"
],
"rhea":[
"17739",
"17738",
"17737",
"17740"
],
"sabiork":[
"2351"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01740"
]
}
},
{
"id":"SHKK",
"name":"Shikimate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"skm5p_c":1.0,
"skm_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0977",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"SHKK"
]
},
"annotation":{
"bigg.reaction":[
"SHKK"
],
"biocyc":[
"META:SHIKIMATE-KINASE-RXN"
],
"ec-code":[
"2.7.1.71"
],
"kegg.reaction":[
"R02412"
],
"metanetx.reaction":[
"MNXR104379"
],
"reactome.reaction":[
"R-MTU-964939"
],
"rhea":[
"13121",
"13122",
"13123",
"13124"
],
"sabiork":[
"2350"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01739"
]
}
},
{
"id":"SO3abcpp",
"name":"Sulfite transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"so3_c":1.0,
"so3_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1903 and Gmet_1906 and Gmet_1905 and Gmet_1904",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"SO3abcpp"
]
},
"annotation":{
"bigg.reaction":[
"SO3abcpp"
],
"metanetx.reaction":[
"MNXR104458"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SO3tex",
"name":"Sulfite transport via diffusion (extracellular to periplasm)",
"metabolites":{
"so3_e":-1.0,
"so3_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"SO3tex"
]
},
"annotation":{
"bigg.reaction":[
"SO3tex"
],
"metanetx.reaction":[
"MNXR104460"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12453",
"rxn09260"
]
}
},
{
"id":"PSD120",
"name":"Phosphatidylserine decarboxylase (n-C12:0)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe120_c":1.0,
"ps120_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1483 or Gmet_1263",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD120"
]
},
"annotation":{
"bigg.reaction":[
"PSD120"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103229"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSD140",
"name":"Phosphatidylserine decarboxylase (n-C14:0)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe140_c":1.0,
"ps140_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1483 or Gmet_1263",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD140"
]
},
"annotation":{
"bigg.reaction":[
"PSD140"
],
"metanetx.reaction":[
"MNXR103230"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSD141",
"name":"Phosphatidylserine decarboxylase (n-C14:1)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe141_c":1.0,
"ps141_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1483 or Gmet_1263",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD141"
]
},
"annotation":{
"bigg.reaction":[
"PSD141"
],
"metanetx.reaction":[
"MNXR103231"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSD160",
"name":"Phosphatidylserine decarboxylase (n-C16:0)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe160_c":1.0,
"ps160_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1483 or Gmet_1263",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD160"
]
},
"annotation":{
"bigg.reaction":[
"PSD160"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103232"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09200"
]
}
},
{
"id":"PSD161",
"name":"Phosphatidylserine decarboxylase (n-C16:1)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe161_c":1.0,
"ps161_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1483 or Gmet_1263",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD161"
]
},
"annotation":{
"bigg.reaction":[
"PSD161"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103233"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSD180",
"name":"Phosphatidylserine decarboxylase (n-C18:0)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe180_c":1.0,
"ps180_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1263 or Gmet_1483",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD180"
]
},
"annotation":{
"bigg.reaction":[
"PSD180"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103234"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09202"
]
}
},
{
"id":"PSD181",
"name":"Phosphatidylserine decarboxylase (n-C18:1)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe181_c":1.0,
"ps181_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1263 or Gmet_1483",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD181"
]
},
"annotation":{
"bigg.reaction":[
"PSD181"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103235"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSERT",
"name":"Phosphoserine transaminase",
"metabolites":{
"3php_c":-1.0,
"akg_c":1.0,
"glu__L_c":-1.0,
"pser__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3173",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PSERT"
]
},
"annotation":{
"bigg.reaction":[
"PSERT"
],
"biocyc":[
"META:PSERTRANSAM-RXN"
],
"ec-code":[
"2.6.1.52"
],
"kegg.reaction":[
"R04173"
],
"metanetx.reaction":[
"MNXR103225"
],
"reactome.reaction":[
"R-DRE-977333",
"R-DDI-977333",
"R-CEL-977333",
"R-BTA-977333",
"R-HSA-977333",
"R-SPO-977333",
"R-XTR-977333",
"R-CFA-977333",
"R-DME-977333",
"R-GGA-977333",
"R-MMU-977333",
"R-SCE-977333",
"R-RNO-977333",
"R-ATH-977333",
"R-OSA-977333",
"R-TGU-977333",
"R-SSC-977333"
],
"rhea":[
"14331",
"14329",
"14330",
"14332"
],
"sabiork":[
"3893"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02914"
]
}
},
{
"id":"SO4tex",
"name":"Sulfate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"so4_e":-1.0,
"so4_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"SO4tex"
]
},
"annotation":{
"bigg.reaction":[
"SO4tex"
],
"metanetx.reaction":[
"MNXR104469"
],
"reactome.reaction":[
"R-TGU-8875871",
"R-DRE-8875871",
"R-GGA-8875871",
"R-BTA-8875871",
"R-SCE-8875871",
"R-HSA-8875871",
"R-SPO-8875871",
"R-XTR-8875871",
"R-MMU-8875871",
"R-RNO-8875871",
"R-SSC-8875871",
"R-PFA-8875871",
"R-ATH-8875871",
"R-CFA-8875871",
"R-OSA-8875871",
"R-DME-8875871"
],
"rhea":[
"34983",
"34984",
"34986",
"34985"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09261",
"rxn05238"
]
}
},
{
"id":"SPMS",
"name":"Spermidine synthase",
"metabolites":{
"5mta_c":1.0,
"ametam_c":-1.0,
"h_c":1.0,
"ptrc_c":-1.0,
"spmd_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0583",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"SPMS"
]
},
"annotation":{
"bigg.reaction":[
"SPMS"
],
"biocyc":[
"META:SPERMIDINESYN-RXN"
],
"ec-code":[
"2.5.1.16"
],
"kegg.reaction":[
"R01920"
],
"metanetx.reaction":[
"MNXR95860"
],
"rhea":[
"12724",
"12721",
"12722",
"12723"
],
"sabiork":[
"1974"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01406"
]
}
},
{
"id":"PSP_L",
"name":"Phosphoserine phosphatase (L-serine)",
"metabolites":{
"h2o_c":-1.0,
"pi_c":1.0,
"pser__L_c":-1.0,
"ser__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1630",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PSP_L"
]
},
"annotation":{
"bigg.reaction":[
"PSP_L"
],
"biocyc":[
"META:RXN0-5114"
],
"ec-code":[
"3.1.3.3"
],
"kegg.reaction":[
"R00582"
],
"metanetx.reaction":[
"MNXR103260"
],
"reactome.reaction":[
"R-MMU-977324",
"R-CFA-977324",
"R-DME-977324",
"R-DRE-977324",
"R-SCE-977324",
"R-GGA-977324",
"R-BTA-977324",
"R-SSC-977324",
"R-HSA-977324",
"R-DDI-977324",
"R-SPO-977324",
"R-ATH-977324",
"R-XTR-977324",
"R-CEL-977324",
"R-OSA-977324",
"R-RNO-977324",
"R-TGU-977324"
],
"rhea":[
"21208",
"21211",
"21210",
"21209"
],
"sabiork":[
"10330",
"983"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00420"
]
}
},
{
"id":"IMPD",
"name":"IMP dehydrogenase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"imp_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"xmp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2293",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"IMPD"
]
},
"annotation":{
"bigg.reaction":[
"IMPD"
],
"biocyc":[
"META:IMP-DEHYDROG-RXN"
],
"ec-code":[
"1.1.1.205"
],
"kegg.reaction":[
"R01130"
],
"metanetx.reaction":[
"MNXR100830"
],
"reactome.reaction":[
"R-BTA-73794",
"R-GGA-421222",
"R-CFA-73794",
"R-GGA-73794",
"R-SCE-73794",
"R-XTR-73794",
"R-SPO-73794",
"R-DME-73794",
"R-TGU-73794",
"R-DRE-73794",
"R-PFA-73794",
"R-ATH-73794",
"R-MMU-73794",
"R-OSA-73794",
"R-RNO-73794",
"R-DDI-73794",
"R-HSA-73794",
"R-SSC-73794"
],
"rhea":[
"11711",
"11710",
"11708",
"11709"
],
"sabiork":[
"128"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00834"
]
}
},
{
"id":"PSSA120",
"name":"Phosphatidylserine syntase (n-C12:0)",
"metabolites":{
"cdpdddecg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps120_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1264",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA120"
]
},
"annotation":{
"bigg.reaction":[
"PSSA120"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103266"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSSA140",
"name":"Phosphatidylserine syntase (n-C14:0)",
"metabolites":{
"cdpdtdecg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps140_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1264",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA140"
]
},
"annotation":{
"bigg.reaction":[
"PSSA140"
],
"metanetx.reaction":[
"MNXR103267"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SPODM",
"name":"Superoxide dismutase",
"metabolites":{
"h2o2_c":1.0,
"h_c":-2.0,
"o2_c":1.0,
"o2s_c":-2.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2410",
"subsystem":"Other",
"notes":{
"original_bigg_ids":[
"SPODM"
]
},
"annotation":{
"bigg.reaction":[
"SPODM"
],
"biocyc":[
"META:SUPEROX-DISMUT-RXN"
],
"ec-code":[
"1.15.1.1"
],
"kegg.reaction":[
"R00275"
],
"metanetx.reaction":[
"MNXR104498"
],
"rhea":[
"20696",
"20699",
"20698",
"20697"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSSA141",
"name":"Phosphatidylserine syntase (n-C14:1)",
"metabolites":{
"cdpdtdec7eg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps141_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1264",
"objective_coefficient":-0.354489533809513,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA141"
]
},
"annotation":{
"bigg.reaction":[
"PSSA141"
],
"metanetx.reaction":[
"MNXR103268"
],
"sbo":"SBO:0000176"
}
},
{
"id":"THRTRS",
"name":"Threonyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"thr__L_c":-1.0,
"thrtrna_c":1.0,
"trnathr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1411",
"objective_coefficient":-0.0500765884191879,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"THRTRS"
]
},
"annotation":{
"bigg.reaction":[
"THRTRS"
],
"ec-code":[
"6.1.1.3"
],
"kegg.reaction":[
"R03663"
],
"metanetx.reaction":[
"MNXR104848"
],
"reactome.reaction":[
"R-HSA-380002",
"R-HSA-380201"
],
"sabiork":[
"391"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06447"
]
}
},
{
"id":"PSSA160",
"name":"Phosphatidylserine syntase (n-C16:0)",
"metabolites":{
"cdpdhdecg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps160_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1264",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA160"
]
},
"annotation":{
"bigg.reaction":[
"PSSA160"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103269"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09208"
]
}
},
{
"id":"PSSA161",
"name":"Phosphatidylserine syntase (n-C16:1)",
"metabolites":{
"cdpdhdec9eg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps161_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1264",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA161"
]
},
"annotation":{
"bigg.reaction":[
"PSSA161"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103270"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSSA180",
"name":"Phosphatidylserine syntase (n-C18:0)",
"metabolites":{
"cdpdodecg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps180_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1264",
"objective_coefficient":-0.449371490814289,
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA180"
]
},
"annotation":{
"bigg.reaction":[
"PSSA180"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103271"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09210"
]
}
},
{
"id":"PSSA181",
"name":"Phosphatidylserine syntase (n-C18:1)",
"metabolites":{
"cdpdodec11eg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps181_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1264",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA181"
]
},
"annotation":{
"bigg.reaction":[
"PSSA181"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103272"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SSALy",
"name":"Succinate-semialdehyde dehydrogenase (NADP)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"succ_c":1.0,
"sucsal_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3395",
"objective_coefficient":-0.00658902479199819,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"SSALy"
]
},
"annotation":{
"bigg.reaction":[
"SSALy"
],
"biocyc":[
"META:SUCCSEMIALDDEHYDROG-RXN"
],
"ec-code":[
"1.2.1.79",
"1.2.1.16"
],
"kegg.reaction":[
"R00714"
],
"metanetx.reaction":[
"MNXR104541"
],
"rhea":[
"13216",
"13215",
"13214",
"13213"
],
"sabiork":[
"1086"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00509"
]
}
},
{
"id":"SSCOARy",
"name":"Succinyl-coA reductase (NADPH)",
"metabolites":{
"coa_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"succoa_c":-1.0,
"sucsal_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3395",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"SSCOARy"
]
},
"annotation":{
"bigg.reaction":[
"SSCOARy"
],
"biocyc":[
"META:RXN-8891"
],
"ec-code":[
"1.2.1.76"
],
"kegg.reaction":[
"R09280"
],
"metanetx.reaction":[
"MNXR104542"
],
"rhea":[
"26453",
"26451",
"26452",
"26450"
],
"sbo":"SBO:0000176"
}
},
{
"id":"STPT1",
"name":"Phosphoserine:homoserine phosphotransferase",
"metabolites":{
"hom__L_c":-1.0,
"phom_c":1.0,
"pser__L_c":-1.0,
"ser__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1630",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"STPT1"
]
},
"annotation":{
"bigg.reaction":[
"STPT1"
],
"metanetx.reaction":[
"MNXR104599"
],
"sbo":"SBO:0000176"
}
},
{
"id":"STPT2",
"name":"Threonine phosphotransferase",
"metabolites":{
"pser__L_c":-1.0,
"ser__L_c":1.0,
"thr__L_c":-1.0,
"thrp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1630",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"STPT2"
]
},
"annotation":{
"bigg.reaction":[
"STPT2"
],
"metanetx.reaction":[
"MNXR104600"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SUCBZT1",
"name":"Succinyl:benzoate CoA transferase",
"metabolites":{
"benzcoa_c":1.0,
"bz_c":-1.0,
"h_c":-4.0,
"succ_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2142",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"SUCBZT1"
]
},
"annotation":{
"bigg.reaction":[
"SUCBZT1"
],
"metanetx.reaction":[
"MNXR104614"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PTA2",
"name":"Phosphate acetyltransferase",
"metabolites":{
"coa_c":1.0,
"pi_c":-1.0,
"ppap_c":1.0,
"ppcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1035",
"objective_coefficient":2.85795692667179e-16,
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PTA2r"
]
},
"annotation":{
"bigg.reaction":[
"PTA2"
],
"biocyc":[
"META:PTAALT-RXN"
],
"ec-code":[
"2.3.1.8",
"2.3.1.222"
],
"kegg.reaction":[
"R00921"
],
"metanetx.reaction":[
"MNXR102416"
],
"rhea":[
"28046",
"28049",
"28048",
"28047"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00670"
]
}
},
{
"id":"PTAr",
"name":"Phosphotransacetylase",
"metabolites":{
"accoa_c":-1.0,
"actp_c":1.0,
"coa_c":1.0,
"pi_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1035",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PTAr"
]
},
"annotation":{
"bigg.reaction":[
"PTAr"
],
"biocyc":[
"META:PHOSACETYLTRANS-RXN"
],
"ec-code":[
"2.3.1.8"
],
"kegg.reaction":[
"R00230"
],
"metanetx.reaction":[
"MNXR103319"
],
"rhea":[
"19521",
"19523",
"19522",
"19524"
],
"sabiork":[
"72"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00173"
]
}
},
{
"id":"SUCBZT2",
"name":"Succinyl:4-hydroxybenzoate CoA transferase",
"metabolites":{
"4hbz_c":-1.0,
"4hbzcoa_c":1.0,
"succ_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2142",
"subsystem":"Aromatic Compound degradation",
"notes":{
"original_bigg_ids":[
"SUCBZT2"
]
},
"annotation":{
"bigg.reaction":[
"SUCBZT2"
],
"metanetx.reaction":[
"MNXR104615"
],
"sbo":"SBO:0000176"
}
},
{
"id":"THZPSN3",
"name":"Thiazole phosphate synthesis",
"metabolites":{
"4mpetz_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"co2_c":1.0,
"dhgly_c":-1.0,
"dxyl5p_c":-1.0,
"h2o_c":2.0,
"h_c":-1.0,
"iscs_c":1.0,
"iscssh_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0992 and Gmet_2935 and Gmet_2855 and Gmet_2933) or (Gmet_0992 and Gmet_2935 and Gmet_1568 and Gmet_2933) or (Gmet_0992 and Gmet_2935 and Gmet_2855 and Gmet_1567) or (Gmet_0992 and Gmet_2935 and Gmet_1568 and Gmet_1567) or (Gmet_0872 and Gmet_2935 and Gmet_2855 and Gmet_2933) or (Gmet_0872 and Gmet_2935 and Gmet_1568 and Gmet_2933) or (Gmet_0872 and Gmet_2935 and Gmet_2855 and Gmet_1567) or (Gmet_0872 and Gmet_2935 and Gmet_1568 and Gmet_1567)",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"THZPSN3"
]
},
"annotation":{
"bigg.reaction":[
"THZPSN3"
],
"metanetx.reaction":[
"MNXR104861"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SUCOAACTr",
"name":"Succinyl-CoA:acetate CoA transferase",
"metabolites":{
"ac_c":-1.0,
"accoa_c":1.0,
"succ_c":1.0,
"succoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3044 or Gmet_1730",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"SUCOAACTr"
]
},
"annotation":{
"bigg.reaction":[
"SUCOAACTr"
],
"biocyc":[
"META:RXN-8807"
],
"ec-code":[
"2.8.3.18"
],
"kegg.reaction":[
"R10343"
],
"metanetx.reaction":[
"MNXR104636"
],
"rhea":[
"35714",
"35711",
"35712",
"35713"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SUCOAS",
"name":"Succinyl-CoA synthetase (ADP-forming)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"pi_c":1.0,
"succ_c":-1.0,
"succoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2260 and Gmet_2261) or (Gmet_0729 and Gmet_0730) or (Gmet_2068 and Gmet_2069)",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"SUCOAS"
]
},
"annotation":{
"bigg.reaction":[
"SUCOAS"
],
"biocyc":[
"META:SUCCCOASYN-RXN"
],
"ec-code":[
"6.2.1.5"
],
"kegg.reaction":[
"R00405"
],
"metanetx.reaction":[
"MNXR104635"
],
"reactome.reaction":[
"R-BTA-70997",
"R-GGA-372977",
"R-PFA-70997",
"R-GGA-373134",
"R-TGU-70997",
"R-XTR-70997",
"R-SSC-70997",
"R-HSA-70997",
"R-DRE-70997",
"R-SCE-70997",
"R-SPO-70997",
"R-DDI-70997",
"R-CFA-70997",
"R-OSA-70997",
"R-GGA-70997",
"R-RNO-70997",
"R-ATH-70997",
"R-MMU-70997"
],
"rhea":[
"17664",
"17663",
"17662",
"17661"
],
"sabiork":[
"260"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00285"
]
}
},
{
"id":"SULFACabcpp",
"name":"Sulfoacetate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"sulfac_c":1.0,
"sulfac_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0996 and Gmet_0997 and Gmet_0998) or (Gmet_1901 and Gmet_1899 and Gmet_1900)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"SULFACabcpp"
]
},
"annotation":{
"bigg.reaction":[
"SULFACabcpp"
],
"metanetx.reaction":[
"MNXR104645"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05656",
"rxn09277"
]
}
},
{
"id":"SULFACtex",
"name":"Sulfoaceate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"sulfac_e":-1.0,
"sulfac_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"SULFACtex"
]
},
"annotation":{
"bigg.reaction":[
"SULFACtex"
],
"metanetx.reaction":[
"MNXR104646"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09278"
]
}
},
{
"id":"SULR2pp",
"name":"Sulfite reductase (menaquinol) periplasmic",
"metabolites":{
"h2o_p":3.0,
"h2s_p":1.0,
"h_p":-2.0,
"mql8_c":-3.0,
"mqn8_c":3.0,
"so3_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0294 and Gmet_0295) or (Gmet_0296 and Gmet_0295)",
"subsystem":"Sulfur Metabolism",
"notes":{
"original_bigg_ids":[
"SULR2pp"
]
},
"annotation":{
"bigg.reaction":[
"SULR2pp"
],
"metanetx.reaction":[
"MNXR104651"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SULR3",
"name":"Sulfite reductase (ferredoxin dependent)",
"metabolites":{
"fdxo_42_c":3.0,
"fdxr_42_c":-3.0,
"h2o_c":3.0,
"h2s_c":1.0,
"h_c":-8.0,
"so3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2520 or (Gmet_1570 and Gmet_3222)",
"objective_coefficient":7.28583859910259e-17,
"subsystem":"Sulfur Metabolism",
"notes":{
"original_bigg_ids":[
"SULR3"
]
},
"annotation":{
"bigg.reaction":[
"SULR3"
],
"metanetx.reaction":[
"MNXR104652"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SULR",
"name":"Sulfite reductase (NADPH2)",
"metabolites":{
"h2o_c":3.0,
"h2s_c":1.0,
"h_c":-5.0,
"nadp_c":3.0,
"nadph_c":-3.0,
"so3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1570 and Gmet_3222",
"subsystem":"Sulfur Metabolism",
"notes":{
"original_bigg_ids":[
"SULRi"
]
},
"annotation":{
"bigg.reaction":[
"SULR"
],
"biocyc":[
"META:SULFITE-REDUCT-RXN"
],
"ec-code":[
"1.8.1.2"
],
"kegg.reaction":[
"R00858"
],
"metanetx.reaction":[
"MNXR104650"
],
"rhea":[
"13802",
"13803",
"13804",
"13801"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00623"
]
}
},
{
"id":"SULRpp",
"name":"Sulfite reductase (cytochrome) periplasmic",
"metabolites":{
"h2o_p":3.0,
"h2s_p":1.0,
"h_p":-8.0,
"ppco_p":6.0,
"ppcr_p":-6.0,
"so3_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0294 or Gmet_0296",
"objective_coefficient":-0.00593012231279877,
"subsystem":"Sulfur Metabolism",
"notes":{
"original_bigg_ids":[
"SULRpp"
]
},
"annotation":{
"bigg.reaction":[
"SULRpp"
],
"metanetx.reaction":[
"MNXR104654"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SULabcpp",
"name":"Sulfate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"so4_c":1.0,
"so4_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1903 and Gmet_1906 and Gmet_1905 and Gmet_1904",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"SULabcpp"
]
},
"annotation":{
"bigg.reaction":[
"SULabcpp"
],
"biocyc":[
"META:3.6.3.25-RXN",
"META:ABC-70-RXN"
],
"ec-code":[
"3.6.3.25"
],
"metanetx.reaction":[
"MNXR104655"
],
"rhea":[
"10192#1",
"10193#1",
"10194#1",
"10195#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09276",
"rxn05153"
]
}
},
{
"id":"PTAtex",
"name":"Pentanoate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pta_e":-1.0,
"pta_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"PTAtex"
]
},
"annotation":{
"bigg.reaction":[
"PTAtex"
],
"metanetx.reaction":[
"MNXR103320"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PTPATi",
"name":"Pantetheine-phosphate adenylyltransferase",
"metabolites":{
"atp_c":-1.0,
"dpcoa_c":1.0,
"h_c":-1.0,
"pan4p_c":-1.0,
"ppi_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1759",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"PTPAT"
]
},
"annotation":{
"bigg.reaction":[
"PTPATi"
],
"biocyc":[
"META:PANTEPADENYLYLTRAN-RXN"
],
"ec-code":[
"2.7.7.3"
],
"kegg.reaction":[
"R03035"
],
"metanetx.reaction":[
"MNXR95892"
],
"reactome.reaction":[
"R-CFA-196754",
"R-ATH-196754",
"R-SSC-196754",
"R-DDI-196754",
"R-XTR-196754",
"R-CEL-196754",
"R-RNO-196754",
"R-PFA-196754",
"R-GGA-196754",
"R-HSA-196754",
"R-SCE-196754",
"R-DRE-196754",
"R-TGU-196754",
"R-OSA-196754",
"R-MMU-196754",
"R-BTA-196754",
"R-DME-196754"
],
"rhea":[
"19803",
"19802",
"19801",
"19804"
],
"sabiork":[
"2884",
"12078"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02175"
]
}
},
{
"id":"PUNP1",
"name":"Purine-nucleoside phosphorylase (Adenosine)",
"metabolites":{
"ade_c":1.0,
"adn_c":-1.0,
"pi_c":-1.0,
"r1p_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1274",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"PUNP1"
]
},
"annotation":{
"bigg.reaction":[
"PUNP1"
],
"biocyc":[
"META:ADENPHOSPHOR-RXN"
],
"ec-code":[
"2.4.2.1"
],
"kegg.reaction":[
"R01561"
],
"metanetx.reaction":[
"MNXR103343"
],
"rhea":[
"27644",
"27645",
"27643",
"27642"
],
"sabiork":[
"133"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01138"
]
}
},
{
"id":"PUTA3",
"name":"PUTA3",
"metabolites":{
"glu5sa_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3512",
"objective_coefficient":-0.00658902479199841,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"PUTA3"
]
},
"annotation":{
"bigg.reaction":[
"PUTA3"
],
"biocyc":[
"META:RXN-14116"
],
"ec-code":[
"1.5.1.12",
"1.2.1.88"
],
"kegg.reaction":[
"R00245"
],
"metanetx.reaction":[
"MNXR103352"
],
"reactome.reaction":[
"R-GGA-70679",
"R-DRE-70679",
"R-XTR-70679",
"R-HSA-70679",
"R-CFA-70679",
"R-SCE-70679",
"R-BTA-70679",
"R-DME-70679",
"R-DDI-70679",
"R-RNO-70679",
"R-SSC-70679",
"R-TGU-70679",
"R-MMU-70679",
"R-SPO-70679",
"R-CEL-70679"
],
"rhea":[
"30237",
"30236",
"30235",
"30238"
],
"sabiork":[
"756"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00183"
]
}
},
{
"id":"PYK",
"name":"Pyruvate kinase",
"metabolites":{
"adp_c":-1.0,
"atp_c":1.0,
"h_c":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0122",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"PYK"
]
},
"annotation":{
"bigg.reaction":[
"PYK"
],
"biocyc":[
"META:PEPDEPHOS-RXN"
],
"ec-code":[
"2.7.1.40"
],
"kegg.reaction":[
"R00200"
],
"metanetx.reaction":[
"MNXR103371"
],
"reactome.reaction":[
"R-SSC-71670",
"R-GGA-353056",
"R-DRE-71670",
"R-OSA-71670",
"R-SPO-71670",
"R-DDI-71670",
"R-SCE-71670",
"R-CEL-71670",
"R-PFA-71670",
"R-HSA-71670",
"R-TGU-71670",
"R-DME-71670",
"R-ATH-71670",
"R-BTA-71670",
"R-MMU-71670",
"R-RNO-71670",
"R-GGA-71670",
"R-CFA-71670",
"R-XTR-71670"
],
"rhea":[
"18160",
"18159",
"18158",
"18157"
],
"sabiork":[
"9"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00148"
]
}
},
{
"id":"PYRt2rpp",
"name":"Pyruvate reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"pyr_c":1.0,
"pyr_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PYRt2pp"
]
},
"annotation":{
"bigg.reaction":[
"PYRt2rpp"
],
"metanetx.reaction":[
"MNXR103385"
],
"reactome.reaction":[
"R-RNO-372347",
"R-HSA-372342",
"R-GGA-372359"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05469",
"rxn09832",
"rxn09717",
"rxn09217"
]
}
},
{
"id":"PYRt4pp",
"name":"Pyruvate transport via sodium symport",
"metabolites":{
"na1_c":1.0,
"na1_p":-1.0,
"pyr_c":1.0,
"pyr_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3031 or Gmet_0739 or Gmet_3288",
"objective_coefficient":-0.00197670743759952,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PYRt4pp"
]
},
"annotation":{
"bigg.reaction":[
"PYRt4pp"
],
"metanetx.reaction":[
"MNXR103387"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PYRtex",
"name":"Pyruvate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pyr_e":-1.0,
"pyr_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"PYRtex"
]
},
"annotation":{
"bigg.reaction":[
"PYRtex"
],
"biocyc":[
"META:TRANS-RXN0-506",
"META:TRANS-RXN0-570"
],
"metanetx.reaction":[
"MNXR103384"
],
"sabiork":[
"12168"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10929",
"rxn09218"
]
}
},
{
"id":"QULNS",
"name":"Quinolinate synthase",
"metabolites":{
"dhap_c":-1.0,
"h2o_c":2.0,
"iasp_c":-1.0,
"pi_c":1.0,
"quln_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3544",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"QULNS"
]
},
"annotation":{
"bigg.reaction":[
"QULNS"
],
"biocyc":[
"META:QUINOLINATE-SYNTHA-RXN"
],
"ec-code":[
"2.5.1.72"
],
"kegg.reaction":[
"R04292"
],
"metanetx.reaction":[
"MNXR103400"
],
"rhea":[
"25889",
"25891",
"25890",
"25888"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02988"
]
}
},
{
"id":"RBFK",
"name":"Riboflavin kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fmn_c":1.0,
"h_c":1.0,
"ribflv_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1388",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"RBFK"
]
},
"annotation":{
"bigg.reaction":[
"RBFK"
],
"biocyc":[
"META:RIBOFLAVINKIN-RXN"
],
"ec-code":[
"2.7.1.26"
],
"kegg.reaction":[
"R00549"
],
"metanetx.reaction":[
"MNXR103429"
],
"reactome.reaction":[
"R-TGU-196964",
"R-RNO-196964",
"R-SPO-196964",
"R-CEL-196964",
"R-HSA-196964",
"R-MMU-196964",
"R-DME-196964",
"R-BTA-196964",
"R-SSC-196964",
"R-CFA-196964",
"R-GGA-196964",
"R-XTR-196964",
"R-SCE-196964",
"R-DRE-196964",
"R-PFA-196964"
],
"rhea":[
"14360",
"14359",
"14358",
"14357"
],
"sabiork":[
"277"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00392"
]
}
},
{
"id":"RBFSa",
"name":"Riboflavin synthase",
"metabolites":{
"4r5au_c":-1.0,
"db4p_c":-1.0,
"dmlz_c":1.0,
"h2o_c":2.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1625 and Gmet_1627",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"RBFSa"
]
},
"annotation":{
"bigg.reaction":[
"RBFSa"
],
"ec-code":[
"2.5.1.9",
"2.5.1.78"
],
"kegg.reaction":[
"R04457"
],
"metanetx.reaction":[
"MNXR97501"
],
"sabiork":[
"8561"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03080"
]
}
},
{
"id":"T2DECAI",
"name":"Trans-2-decenoyl-ACP isomerase",
"metabolites":{
"cdec3eACP_c":1.0,
"tdec2eACP_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2354 or Gmet_1697",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"T2DECAI"
]
},
"annotation":{
"bigg.reaction":[
"T2DECAI"
],
"metanetx.reaction":[
"MNXR104659"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TALA",
"name":"Transaldolase",
"metabolites":{
"e4p_c":1.0,
"f6p_c":1.0,
"g3p_c":-1.0,
"s7p_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0497",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"TALA"
]
},
"annotation":{
"bigg.reaction":[
"TALA"
],
"biocyc":[
"META:TRANSALDOL-RXN"
],
"ec-code":[
"2.2.1.2"
],
"kegg.reaction":[
"R01827"
],
"metanetx.reaction":[
"MNXR104715"
],
"rhea":[
"17056",
"17055",
"17054",
"17053"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TAURabcpp",
"name":"Taurine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"taur_c":1.0,
"taur_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0996 and Gmet_0997 and Gmet_0998) or (Gmet_1901 and Gmet_1899 and Gmet_1900)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"TAURabcpp"
]
},
"annotation":{
"bigg.reaction":[
"TAURabcpp"
],
"biocyc":[
"META:ABC-64-RXN",
"META:3.6.3.36-RXN"
],
"ec-code":[
"3.6.3.36"
],
"metanetx.reaction":[
"MNXR104732"
],
"rhea":[
"14614#1",
"14615#1",
"14613#1",
"14616#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09285",
"rxn05172"
]
}
},
{
"id":"TAURtex",
"name":"Taurine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"taur_e":-1.0,
"taur_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"TAURtex"
]
},
"annotation":{
"bigg.reaction":[
"TAURtex"
],
"metanetx.reaction":[
"MNXR104733"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09286",
"rxn13402"
]
}
},
{
"id":"TCFERCYT",
"name":"Tc(VII)Fe reductase",
"metabolites":{
"fe2_e":-3.0,
"fe3_e":3.0,
"tc4_e":1.0,
"tc7_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0930",
"subsystem":"Metal Respiration",
"notes":{
"original_bigg_ids":[
"TCFERCYT"
]
},
"annotation":{
"bigg.reaction":[
"TCFERCYT"
],
"metanetx.reaction":[
"MNXR104740"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UPLA4FNF",
"name":"Undecaprenyl phosphate-L-Ara4FN formylase",
"metabolites":{
"for_c":1.0,
"h2o_c":-1.0,
"uLa4fn_c":-1.0,
"uLa4n_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0882",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UPLA4FNF"
]
},
"annotation":{
"bigg.reaction":[
"UPLA4FNF"
],
"metanetx.reaction":[
"MNXR105132"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09363"
]
}
},
{
"id":"UPLA4FNT",
"name":"Undecaprenyl phosphate-L-Ara4FN transferase",
"metabolites":{
"uLa4fn_c":1.0,
"udcpp_c":-1.0,
"udpLa4fn_c":-1.0,
"udp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0885",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UPLA4FNT"
]
},
"annotation":{
"bigg.reaction":[
"UPLA4FNT"
],
"metanetx.reaction":[
"MNXR105133"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UPP3MT",
"name":"Uroporphyrinogen methyltransferase",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"dscl_c":1.0,
"h_c":1.0,
"uppg3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3235",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"UPP3MT"
]
},
"annotation":{
"bigg.reaction":[
"UPP3MT"
],
"biocyc":[
"META:RXN-13403"
],
"ec-code":[
"2.1.1.107"
],
"kegg.reaction":[
"R03194"
],
"metanetx.reaction":[
"MNXR105137"
],
"rhea":[
"32462",
"32461",
"32459",
"32460"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02287"
]
}
},
{
"id":"UPP3S",
"name":"Uroporphyrinogen-III synthase",
"metabolites":{
"h2o_c":1.0,
"hmbil_c":-1.0,
"uppg3_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3235",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"UPP3S"
]
},
"annotation":{
"bigg.reaction":[
"UPP3S"
],
"biocyc":[
"META:UROGENIIISYN-RXN"
],
"ec-code":[
"4.2.1.75"
],
"kegg.reaction":[
"R03165"
],
"metanetx.reaction":[
"MNXR105139"
],
"reactome.reaction":[
"R-MMU-189488",
"R-DME-189488",
"R-RNO-189488",
"R-SCE-189488",
"R-DRE-189488",
"R-CFA-189488",
"R-TGU-189488",
"R-SSC-189488",
"R-HSA-189488",
"R-GGA-189488",
"R-GGA-421482",
"R-XTR-189488",
"R-BTA-189488",
"R-SPO-189488"
],
"rhea":[
"18966",
"18968",
"18965",
"18967"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02264"
]
}
},
{
"id":"UPPDC1",
"name":"Uroporphyrinogen decarboxylase (uroporphyrinogen III)",
"metabolites":{
"co2_c":4.0,
"cpppg3_c":1.0,
"h_c":-4.0,
"uppg3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0016",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"UPPDC1"
]
},
"annotation":{
"bigg.reaction":[
"UPPDC1"
],
"biocyc":[
"META:UROGENDECARBOX-RXN"
],
"ec-code":[
"4.1.1.37"
],
"kegg.reaction":[
"R03197"
],
"metanetx.reaction":[
"MNXR105140"
],
"reactome.reaction":[
"R-GGA-421515",
"R-DME-189425",
"R-BTA-189425",
"R-SSC-189425",
"R-DDI-189425",
"R-RNO-189425",
"R-SPO-189425",
"R-OSA-189425",
"R-GGA-189425",
"R-HSA-189425",
"R-SCE-189425",
"R-MMU-189425",
"R-PFA-189425",
"R-XTR-189425",
"R-TGU-189425",
"R-CFA-189425",
"R-DRE-189425",
"R-ATH-189425"
],
"rhea":[
"19868",
"19865",
"19867",
"19866"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02288"
]
}
},
{
"id":"TCURCYT",
"name":"Tc(VII)U reductase",
"metabolites":{
"tc4_e":2.0,
"tc7_e":-2.0,
"u4_e":-3.0,
"u6_e":3.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0930",
"subsystem":"Metal Respiration",
"notes":{
"original_bigg_ids":[
"TCURCYT"
]
},
"annotation":{
"bigg.reaction":[
"TCURCYT"
],
"metanetx.reaction":[
"MNXR104746"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TDPDRE",
"name":"DTDP-4-dehydrorhamnose 3,5-epimerase",
"metabolites":{
"dtdp4d6dg_c":-1.0,
"dtdp4d6dm_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0925",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDPDREr"
]
},
"annotation":{
"bigg.reaction":[
"TDPDRE"
],
"biocyc":[
"META:DTDPDEHYDRHAMEPIM-RXN"
],
"ec-code":[
"5.1.3.13"
],
"kegg.reaction":[
"R06514"
],
"metanetx.reaction":[
"MNXR104759"
],
"rhea":[
"16970",
"16969",
"16972",
"16971"
],
"sabiork":[
"2651"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02000"
]
}
},
{
"id":"TDPDRR",
"name":"DTDP-4-dehydrorhamnose reductase",
"metabolites":{
"dtdp4d6dm_c":-1.0,
"dtdprmn_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2472",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDPDRRr"
]
},
"annotation":{
"bigg.reaction":[
"TDPDRR"
],
"biocyc":[
"META:DTDPDEHYRHAMREDUCT-RXN"
],
"ec-code":[
"1.1.1.133"
],
"kegg.reaction":[
"R02777"
],
"metanetx.reaction":[
"MNXR104760"
],
"rhea":[
"21796",
"21797",
"21798",
"21799"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02003"
]
}
},
{
"id":"TDPGDH",
"name":"DTDPglucose 4,6-dehydratase",
"metabolites":{
"dtdp4d6dg_c":1.0,
"dtdpglu_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2473",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDPGDH"
]
},
"annotation":{
"bigg.reaction":[
"TDPGDH"
],
"biocyc":[
"META:DTDPGLUCDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.46"
],
"kegg.reaction":[
"R06513"
],
"metanetx.reaction":[
"MNXR104761"
],
"rhea":[
"17221",
"17222",
"17224",
"17223"
],
"sabiork":[
"2648"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01997"
]
}
},
{
"id":"TDSK",
"name":"Tetraacyldisaccharide 4'kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"lipidA_c":1.0,
"lipidAds_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2347",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"TDSK"
]
},
"annotation":{
"bigg.reaction":[
"TDSK"
],
"biocyc":[
"META:TETRAACYLDISACC4KIN-RXN"
],
"ec-code":[
"2.7.1.130"
],
"kegg.reaction":[
"R04657"
],
"metanetx.reaction":[
"MNXR104762"
],
"rhea":[
"20702",
"20701",
"20703",
"20700"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03181"
]
}
},
{
"id":"UPPRT",
"name":"Uracil phosphoribosyltransferase",
"metabolites":{
"ppi_c":1.0,
"prpp_c":-1.0,
"ump_c":1.0,
"ura_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1768",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"UPPRT"
]
},
"annotation":{
"bigg.reaction":[
"UPPRT"
],
"biocyc":[
"META:URACIL-PRIBOSYLTRANS-RXN"
],
"ec-code":[
"2.4.2.9"
],
"kegg.reaction":[
"R00966"
],
"metanetx.reaction":[
"MNXR105142"
],
"rhea":[
"13018",
"13019",
"13020",
"13017"
],
"sabiork":[
"10227",
"86"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00711"
]
}
},
{
"id":"TDSKN",
"name":"Tetraacyldisaccharide 4'kinase (glucosediaminyl)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"lipidAdsn_c":-1.0,
"lipidAn_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2347",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"TDSKN"
]
},
"annotation":{
"bigg.reaction":[
"TDSKN"
],
"metanetx.reaction":[
"MNXR104763"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TKT1",
"name":"Transketolase",
"metabolites":{
"g3p_c":1.0,
"r5p_c":-1.0,
"s7p_c":1.0,
"xu5p__D_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0551 and Gmet_0552) or Gmet_0178",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"TKT1"
]
},
"annotation":{
"bigg.reaction":[
"TKT1"
],
"ec-code":[
"2.2.1.1"
],
"metanetx.reaction":[
"MNXR104868"
],
"sbo":"SBO:0000176"
}
},
{
"id":"THRA2",
"name":"L-allo-Threonine Aldolase",
"metabolites":{
"acald_c":1.0,
"athr__L_c":-1.0,
"gly_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0270",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"THRA2i"
]
},
"annotation":{
"bigg.reaction":[
"THRA2"
],
"sbo":"SBO:0000176"
}
},
{
"id":"THRA",
"name":"Threonine aldolase",
"metabolites":{
"acald_c":1.0,
"gly_c":1.0,
"thr__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3503",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"THRAr"
]
},
"annotation":{
"bigg.reaction":[
"THRA"
],
"biocyc":[
"META:THREONINE-ALDOLASE-RXN"
],
"ec-code":[
"4.1.2.5",
"4.1.2.48"
],
"kegg.reaction":[
"R00751"
],
"metanetx.reaction":[
"MNXR104833"
],
"rhea":[
"19625",
"19626",
"19627",
"19628"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00541"
]
}
},
{
"id":"URCYT",
"name":"U(VI) reductase",
"metabolites":{
"omcho_e":2.0,
"omchr_e":-2.0,
"u4_e":1.0,
"u6_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0930",
"subsystem":"Metal Respiration",
"notes":{
"original_bigg_ids":[
"URCYT"
]
},
"annotation":{
"bigg.reaction":[
"URCYT"
],
"metanetx.reaction":[
"MNXR105151"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UMPK",
"name":"UMP kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"udp_c":1.0,
"ump_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1252",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"URIDK1"
]
},
"annotation":{
"bigg.reaction":[
"UMPK"
],
"biocyc":[
"META:RXN-12002"
],
"ec-code":[
"2.7.4.4",
"2.7.4.22",
"2.7.4.14"
],
"kegg.reaction":[
"R00158"
],
"metanetx.reaction":[
"MNXR105118"
],
"rhea":[
"24400",
"24402",
"24401",
"24403"
],
"sabiork":[
"201"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00119"
]
}
},
{
"id":"USHD",
"name":"UDP-sugar hydrolase",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"lipidX_c":1.0,
"u23ga_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2776",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"USHD"
]
},
"annotation":{
"bigg.reaction":[
"USHD"
],
"biocyc":[
"META:LIPIDXSYNTHESIS-RXN"
],
"ec-code":[
"3.6.1.54"
],
"kegg.reaction":[
"R04549"
],
"metanetx.reaction":[
"MNXR105170"
],
"rhea":[
"25216",
"25215",
"25214",
"25213"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03130"
]
}
},
{
"id":"THRD_L",
"name":"L-threonine deaminase",
"metabolites":{
"2obut_c":1.0,
"nh4_c":1.0,
"thr__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3072",
"objective_coefficient":-0.0164725619799964,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"THRD_L"
]
},
"annotation":{
"bigg.reaction":[
"THRD_L"
],
"biocyc":[
"META:THREDEHYD-RXN"
],
"ec-code":[
"4.3.1.19"
],
"kegg.reaction":[
"R00996"
],
"metanetx.reaction":[
"MNXR104714"
],
"rhea":[
"22108",
"22111",
"22109",
"22110"
],
"sabiork":[
"1290"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00737"
]
}
},
{
"id":"TKT2",
"name":"Transketolase",
"metabolites":{
"e4p_c":-1.0,
"f6p_c":1.0,
"g3p_c":1.0,
"xu5p__D_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_0551 and Gmet_0552) or Gmet_0178",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"TKT2"
]
},
"annotation":{
"bigg.reaction":[
"TKT2"
],
"biocyc":[
"META:2TRANSKETO-RXN"
],
"ec-code":[
"2.2.1.1"
],
"kegg.reaction":[
"R01830"
],
"metanetx.reaction":[
"MNXR104869"
],
"rhea":[
"27627",
"27628",
"27626",
"27629"
],
"sbo":"SBO:0000176"
}
},
{
"id":"THRPDC",
"name":"L threonine phosphate decarboxylase",
"metabolites":{
"applp_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"thrp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0487",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"THRPD"
]
},
"annotation":{
"bigg.reaction":[
"THRPDC"
],
"biocyc":[
"META:4.1.1.81-RXN"
],
"ec-code":[
"4.1.1.81"
],
"kegg.reaction":[
"R06530"
],
"metanetx.reaction":[
"MNXR104843"
],
"rhea":[
"11495",
"11492",
"11494",
"11493"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04385"
]
}
},
{
"id":"USHDN",
"name":"UDP-N-2,N-3-di-(3-hydroxyacyl)glucosediamine pyrophosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"lipidXn_c":1.0,
"u23gn_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2776",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"USHDN"
]
},
"annotation":{
"bigg.reaction":[
"USHDN"
],
"metanetx.reaction":[
"MNXR105171"
],
"sbo":"SBO:0000176"
}
},
{
"id":"VACOAI",
"name":"Vinylacetyl-CoA Delta-isomerase",
"metabolites":{
"b2coa_c":1.0,
"vaccoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2215",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"VACOAI"
]
},
"annotation":{
"bigg.reaction":[
"VACOAI"
],
"biocyc":[
"META:VINYLACETYL-COA-DELTA-ISOMERASE-RXN"
],
"ec-code":[
"5.3.3.3"
],
"kegg.reaction":[
"R03031"
],
"metanetx.reaction":[
"MNXR105181"
],
"rhea":[
"10575",
"10572",
"10574",
"10573"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02171"
]
}
},
{
"id":"THRS",
"name":"Threonine synthase",
"metabolites":{
"h2o_c":-1.0,
"phom_c":-1.0,
"pi_c":1.0,
"thr__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1631",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"THRS"
]
},
"annotation":{
"bigg.reaction":[
"THRS"
],
"biocyc":[
"META:THRESYN-RXN"
],
"ec-code":[
"4.2.3.1"
],
"kegg.reaction":[
"R01466"
],
"metanetx.reaction":[
"MNXR104846"
],
"rhea":[
"10842",
"10841",
"10840",
"10843"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01069"
]
}
},
{
"id":"TMDS",
"name":"Thymidylate synthase",
"metabolites":{
"dhf_c":1.0,
"dtmp_c":1.0,
"dump_c":-1.0,
"mlthf_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0378",
"subsystem":"Nucleotide Metabolism",
"notes":{
"original_bigg_ids":[
"TMDS"
]
},
"annotation":{
"bigg.reaction":[
"TMDS"
],
"ec-code":[
"2.1.1.45"
],
"kegg.reaction":[
"R02101"
],
"metanetx.reaction":[
"MNXR104889"
],
"rhea":[
"12106",
"12104",
"12107",
"12105"
],
"sbo":"SBO:0000176"
}
},
{
"id":"VALTA",
"name":"Valine transaminase",
"metabolites":{
"3mob_c":1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"val__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2853",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"VALTA"
]
},
"annotation":{
"bigg.reaction":[
"VALTA"
],
"biocyc":[
"META:BRANCHED-CHAINAMINOTRANSFERVAL-RXN"
],
"ec-code":[
"2.6.1.42",
"2.6.1.6"
],
"kegg.reaction":[
"R01214"
],
"metanetx.reaction":[
"MNXR96230"
],
"rhea":[
"24813",
"24816",
"24814",
"24815"
],
"sabiork":[
"1446"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00903"
]
}
},
{
"id":"TMPK",
"name":"Thiamine-phosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"thmmp_c":-1.0,
"thmpp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3213",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"TMPK"
]
},
"annotation":{
"bigg.reaction":[
"TMPK"
],
"biocyc":[
"META:THI-P-KIN-RXN"
],
"ec-code":[
"2.7.4.16"
],
"kegg.reaction":[
"R00617"
],
"metanetx.reaction":[
"MNXR104907"
],
"rhea":[
"15913",
"15916",
"15915",
"15914"
],
"sabiork":[
"1007"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00438"
]
}
},
{
"id":"VALTRS",
"name":"Valyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaval_c":-1.0,
"val__L_c":-1.0,
"valtrna_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0956",
"objective_coefficient":-0.0494176859399879,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"VALTRS"
]
},
"annotation":{
"bigg.reaction":[
"VALTRS"
],
"ec-code":[
"6.1.1.9"
],
"kegg.reaction":[
"R03665"
],
"metanetx.reaction":[
"MNXR105186"
],
"reactome.reaction":[
"R-HSA-380042",
"R-HSA-380199"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06449"
]
}
},
{
"id":"VALabcpp",
"name":"L-valine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"val__L_c":1.0,
"val__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1819 and Gmet_1820 and Gmet_1821 and Gmet_1822 and Gmet_1823",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"VALabcpp"
]
},
"annotation":{
"bigg.reaction":[
"VALabcpp"
],
"biocyc":[
"META:ABC-36-RXN"
],
"metanetx.reaction":[
"MNXR105187"
],
"rhea":[
"29805#2",
"29803#2",
"29806#2",
"29804#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05168",
"rxn09373"
]
}
},
{
"id":"VALtex",
"name":"L-valine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"val__L_e":-1.0,
"val__L_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"VALtex"
]
},
"annotation":{
"bigg.reaction":[
"VALtex"
],
"biocyc":[
"META:TRANS-RXN0-269"
],
"metanetx.reaction":[
"MNXR105190"
],
"rhea":[
"29706",
"29703",
"29705",
"29704"
],
"sabiork":[
"13468"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05245",
"rxn09375"
]
}
},
{
"id":"TMPPP",
"name":"Thiamine-phosphate diphosphorylase",
"metabolites":{
"2mahmp_c":-1.0,
"4mpetz_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0,
"thmmp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2909",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"TMPPP"
]
},
"annotation":{
"bigg.reaction":[
"TMPPP"
],
"biocyc":[
"META:THI-P-SYN-RXN"
],
"ec-code":[
"2.5.1.3"
],
"kegg.reaction":[
"R03223"
],
"metanetx.reaction":[
"MNXR104908"
],
"rhea":[
"22328",
"22329",
"22331",
"22330"
],
"sabiork":[
"3049"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02305"
]
}
},
{
"id":"VANCYT",
"name":"Vanadium(V) reductase",
"metabolites":{
"omcho_e":1.0,
"omchr_e":-1.0,
"v4_e":1.0,
"v5_e":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0930",
"subsystem":"Metal Respiration",
"notes":{
"original_bigg_ids":[
"VANCYT"
]
},
"annotation":{
"bigg.reaction":[
"VANCYT"
],
"metanetx.reaction":[
"MNXR105191"
],
"sbo":"SBO:0000176"
}
},
{
"id":"VCACT",
"name":"Acetyl-CoA C-acyltransferase (3-oxovaleryl-CoA)",
"metabolites":{
"3optcoa_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"ppcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2074 or Gmet_0144 or Gmet_2197 or Gmet_2213 or Gmet_2268 or Gmet_1719 or Gmet_3302",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"VCACT"
]
},
"annotation":{
"bigg.reaction":[
"VCACT"
],
"metanetx.reaction":[
"MNXR105195"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TOLt2pp",
"name":"Toluene transport in via proton symport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"tol_c":1.0,
"tol_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"TOLt2pp"
]
},
"annotation":{
"bigg.reaction":[
"TOLt2pp"
],
"metanetx.reaction":[
"MNXR104916"
],
"sbo":"SBO:0000185"
}
},
{
"id":"VCOAD",
"name":"Acyl-CoA dehydrogenase (pentanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"pt2coa_c":1.0,
"ptcoa_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1715 or Gmet_2199 or Gmet_3306 or Gmet_2270 or Gmet_2211 or Gmet_3307 or Gmet_1710 or Gmet_2198",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"VCOAD"
]
},
"annotation":{
"bigg.reaction":[
"VCOAD"
],
"metanetx.reaction":[
"MNXR105196"
],
"rhea":[
"43456",
"43458",
"43457",
"43459"
],
"sbo":"SBO:0000176"
}
},
{
"id":"VECOAH",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxypentanoyl-CoA)",
"metabolites":{
"3hptcoa_c":-1.0,
"h2o_c":1.0,
"pt2coa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1716 or Gmet_2071 or Gmet_2196 or Gmet_2224 or Gmet_2057 or Gmet_1572 or Gmet_2207 or Gmet_3305 or Gmet_2212 or Gmet_2195 or Gmet_3284 or Gmet_1575 or Gmet_2204",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"VECOAH"
]
},
"annotation":{
"bigg.reaction":[
"VECOAH"
],
"metanetx.reaction":[
"MNXR105198"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TOLtex",
"name":"Toluene  outer membrane porin transport",
"metabolites":{
"tol_e":-1.0,
"tol_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"TOLtex"
]
},
"annotation":{
"bigg.reaction":[
"TOLtex"
],
"metanetx.reaction":[
"MNXR104917"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12814",
"rxn12815"
]
}
},
{
"id":"VOR1b",
"name":"4-methyl-2-oxopentaoate dehydrogenase (ferredoxin)",
"metabolites":{
"4mop_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0,
"ivcoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1307 and Gmet_1308 and Gmet_1309 and Gmet_1306",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"VOR1b"
]
},
"annotation":{
"bigg.reaction":[
"VOR1b"
],
"metanetx.reaction":[
"MNXR105214"
],
"sbo":"SBO:0000176"
}
},
{
"id":"VOR2b",
"name":"3-methyl-2-oxobutanoate dehydrogenase (ferredoxin)",
"metabolites":{
"3mob_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0,
"ibcoa_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1307 and Gmet_1308 and Gmet_1309 and Gmet_1306",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"VOR2b"
]
},
"annotation":{
"bigg.reaction":[
"VOR2b"
],
"metanetx.reaction":[
"MNXR105215"
],
"sbo":"SBO:0000176"
}
},
{
"id":"VOR3b",
"name":"3-methyl-2-oxopentanoate dehydrogenase (ferredoxin)",
"metabolites":{
"2mbcoa_c":1.0,
"3mop_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"fdxo_42_c":-1.0,
"fdxr_42_c":1.0,
"h_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1307 and Gmet_1308 and Gmet_1309 and Gmet_1306",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"VOR3b"
]
},
"annotation":{
"bigg.reaction":[
"VOR3b"
],
"metanetx.reaction":[
"MNXR105216"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TPI",
"name":"Triose-phosphate isomerase",
"metabolites":{
"dhap_c":-1.0,
"g3p_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1948",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"TPI"
]
},
"annotation":{
"bigg.reaction":[
"TPI"
],
"biocyc":[
"META:TRIOSEPISOMERIZATION-RXN"
],
"ec-code":[
"5.3.1.1"
],
"kegg.reaction":[
"R01015"
],
"metanetx.reaction":[
"MNXR104918"
],
"reactome.reaction":[
"R-RNO-70481",
"R-MMU-70481",
"R-XTR-70481",
"R-SSC-70481",
"R-GGA-352927",
"R-SCE-70454",
"R-CEL-70481",
"R-PFA-70454",
"R-XTR-70454",
"R-BTA-70481",
"R-BTA-70454",
"R-GGA-352914",
"R-ATH-70481",
"R-CFA-70454",
"R-OSA-70454",
"R-HSA-70481",
"R-DRE-70454",
"R-DME-70481",
"R-OSA-70481",
"R-DRE-70481",
"R-ATH-70454",
"R-HSA-70454",
"R-SSC-70454",
"R-DDI-70454",
"R-SCE-70481",
"R-CFA-70481",
"R-PFA-70481",
"R-DDI-70481",
"R-SPO-70454",
"R-SPO-70481",
"R-RNO-70454",
"R-MMU-70454",
"R-CEL-70454",
"R-GGA-70481",
"R-GGA-70454",
"R-DME-70454"
],
"rhea":[
"18587",
"18588",
"18586",
"18585"
],
"sabiork":[
"4"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00747"
]
}
},
{
"id":"WCOS",
"name":"Tungsten pterin cofactor synthase",
"metabolites":{
"amp_c":1.0,
"cu2_c":1.0,
"h2o_c":1.0,
"h_c":-2.0,
"mptamp_c":-1.0,
"tungs_c":-1.0,
"wco_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1038 or Gmet_0336 or Gmet_1804",
"objective_coefficient":-0.235557636313944,
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"WCOS"
]
},
"annotation":{
"bigg.reaction":[
"WCOS"
],
"metanetx.reaction":[
"MNXR138920"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TRDR",
"name":"Thioredoxin reductase (NADPH)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"trdox_c":-1.0,
"trdrd_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3070",
"subsystem":"Central Metabolism",
"notes":{
"original_bigg_ids":[
"TRDR"
]
},
"annotation":{
"bigg.reaction":[
"TRDR"
],
"biocyc":[
"META:THIOREDOXIN-REDUCT-NADPH-RXN"
],
"ec-code":[
"1.8.1.9",
"1.6.4.5"
],
"kegg.reaction":[
"R02016"
],
"metanetx.reaction":[
"MNXR104766"
],
"sabiork":[
"489"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05289"
]
}
},
{
"id":"ZN2t4pp",
"name":"Zinc transport out via antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"k_c":1.0,
"k_p":-1.0,
"zn2_c":-1.0,
"zn2_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_3071) or ((Gmet_3507 and Gmet_3508 and Gmet_3509) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_0858) or ((Gmet_1547 and Gmet_1548 and Gmet_1549) and Gmet_3071)",
"objective_coefficient":-0.00658902479199843,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ZN2t4pp"
]
},
"annotation":{
"bigg.reaction":[
"ZN2t4pp"
],
"metanetx.reaction":[
"MNXR105279"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05315"
]
}
},
{
"id":"TRPS1",
"name":"Tryptophan synthase (indoleglycerol phosphate)",
"metabolites":{
"3ig3p_c":-1.0,
"g3p_c":1.0,
"h2o_c":1.0,
"ser__L_c":-1.0,
"trp__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_2477 and Gmet_2493) or (Gmet_2477 and Gmet_2482)",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"TRPS1"
]
},
"annotation":{
"bigg.reaction":[
"TRPS1"
],
"biocyc":[
"META:TRYPSYN-RXN"
],
"ec-code":[
"4.2.1.20"
],
"kegg.reaction":[
"R02722"
],
"metanetx.reaction":[
"MNXR104343"
],
"rhea":[
"10535",
"10533",
"10534",
"10532"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01964"
]
}
},
{
"id":"ZNabcpp",
"name":"Zinc (Zn+2) transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"zn2_c":1.0,
"zn2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0491 and Gmet_0493 and Gmet_0492",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"ZNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ZNabcpp"
],
"biocyc":[
"META:ABC-63-RXN"
],
"ec-code":[
"3.6.3.5"
],
"metanetx.reaction":[
"MNXR105281"
],
"rhea":[
"29796",
"29798",
"29797",
"29795"
],
"sabiork":[
"13430#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05150",
"rxn09392"
]
}
},
{
"id":"Zn2tex",
"name":"Zinc (Zn+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"zn2_e":-1.0,
"zn2_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"Zn2tex"
]
},
"annotation":{
"bigg.reaction":[
"Zn2tex"
],
"biocyc":[
"META:RXN0-12"
],
"metanetx.reaction":[
"MNXR105280"
],
"reactome.reaction":[
"R-RNO-442359",
"R-TGU-437085",
"R-TGU-437139",
"R-DRE-442393",
"R-HSA-437084",
"R-PFA-437136",
"R-CFA-442422",
"R-BTA-437139",
"R-SSC-442393",
"R-HSA-437129",
"R-XTR-435366",
"R-RNO-442422",
"R-RNO-437136",
"R-SCE-437085",
"R-DME-442422",
"R-DDI-442422",
"R-MMU-435366",
"R-RNO-442317",
"R-DDI-437136",
"R-CEL-442393",
"R-SSC-437139",
"R-CEL-442422",
"R-ATH-437085",
"R-MMU-437136",
"R-MMU-442317",
"R-DRE-442422",
"R-MMU-437139",
"R-SPO-435366",
"R-DME-437136",
"R-OSA-442393",
"R-XTR-437085",
"R-OSA-442422",
"R-CEL-435366",
"R-DRE-442317",
"R-BTA-442317",
"R-DDI-435366",
"R-SSC-442422",
"R-HSA-442387",
"R-HSA-437139",
"R-SCE-435366",
"R-MMU-437085",
"R-ATH-442422",
"R-HSA-442405",
"R-GGA-435366",
"R-CEL-442317",
"R-SSC-442317",
"R-DRE-442387",
"R-DRE-437085",
"R-MMU-437092",
"R-SCE-442422",
"R-CFA-442393",
"R-BTA-442393",
"R-SSC-437136",
"R-TGU-442422",
"R-BTA-442387",
"R-OSA-437085",
"R-RNO-442393",
"R-SCE-442393",
"R-RNO-437139",
"R-SSC-437085",
"R-XTR-442317",
"R-XTR-442393",
"R-GGA-437136",
"R-SCE-437136",
"R-XTR-437136",
"R-HSA-437085",
"R-ATH-442393",
"R-XTR-437139",
"R-BTA-437085",
"R-GGA-442317",
"R-GGA-437085",
"R-CEL-442387",
"R-SSC-435366",
"R-TGU-442387",
"R-SCE-437139",
"R-CEL-437136",
"R-MMU-442387",
"R-MMU-442422",
"R-BTA-442422",
"R-RNO-435366",
"R-RNO-442387",
"R-CFA-437085",
"R-DME-442317",
"R-HSA-435366",
"R-DRE-437139",
"R-TGU-437136",
"R-TGU-435366",
"R-SCE-442387",
"R-HSA-442422",
"R-ATH-437136",
"R-HSA-442317",
"R-HSA-442393",
"R-CEL-437139",
"R-HSA-442345",
"R-GGA-442387",
"R-CFA-442317",
"R-GGA-442422",
"R-DRE-437136",
"R-MMU-442319",
"R-MMU-442393",
"R-GGA-437139",
"R-OSA-437136",
"R-BTA-435366",
"R-CEL-437085",
"R-XTR-442387",
"R-SSC-442387",
"R-DRE-435366",
"R-DDI-437085",
"R-MMU-437145",
"R-CFA-442387",
"R-SPO-442393",
"R-TGU-442317",
"R-DME-442393",
"R-XTR-442422",
"R-SCE-442317",
"R-SPO-437085",
"R-CFA-435366",
"R-RNO-437085",
"R-CFA-437139",
"R-HSA-435375",
"R-RNO-437094",
"R-CFA-437136",
"R-HSA-437136",
"R-DME-435366"
],
"rhea":[
"29353",
"29351",
"29352",
"29354"
],
"sabiork":[
"13042"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09391",
"rxn09390"
]
}
},
{
"id":"TRPTA",
"name":"Tryptophan transaminase",
"metabolites":{
"akg_c":-1.0,
"glu__L_c":1.0,
"indpyr_c":1.0,
"trp__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3325 or Gmet_3433 or Gmet_0732",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"TRPTA"
]
},
"annotation":{
"bigg.reaction":[
"TRPTA"
],
"biocyc":[
"META:TRYPTOPHAN-AMINOTRANSFERASE-RXN"
],
"ec-code":[
"2.6.1.27"
],
"kegg.reaction":[
"R00684"
],
"metanetx.reaction":[
"MNXR104947"
],
"rhea":[
"14095",
"14094",
"14096",
"14093"
],
"sabiork":[
"1064"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00483"
]
}
},
{
"id":"TRPTRS",
"name":"Tryptophanyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnatrp_c":-1.0,
"trp__L_c":-1.0,
"trptrna_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1960",
"objective_coefficient":-0.156159887570362,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"TRPTRS"
]
},
"annotation":{
"bigg.reaction":[
"TRPTRS"
],
"ec-code":[
"6.1.1.2"
],
"kegg.reaction":[
"R03664"
],
"metanetx.reaction":[
"MNXR104948"
],
"reactome.reaction":[
"R-HSA-379977",
"R-HSA-380222"
],
"sabiork":[
"408"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06448"
]
}
},
{
"id":"TSULabcpp",
"name":"Thiosulfate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"tsul_c":1.0,
"tsul_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1903 and Gmet_1906 and Gmet_1905 and Gmet_1904",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"TSULabcpp"
]
},
"annotation":{
"bigg.reaction":[
"TSULabcpp"
],
"biocyc":[
"META:ABC-7-RXN"
],
"ec-code":[
"3.6.3.25"
],
"metanetx.reaction":[
"MNXR104964"
],
"rhea":[
"29872#1",
"29873#1",
"29874#1",
"29871#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05176",
"rxn09329"
]
}
},
{
"id":"TSULtex",
"name":"Thiosulfate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tsul_e":-1.0,
"tsul_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"TSULtex"
]
},
"annotation":{
"bigg.reaction":[
"TSULtex"
],
"metanetx.reaction":[
"MNXR104966"
],
"rhea":[
"32808",
"32810",
"32807",
"32809"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09330"
]
}
},
{
"id":"TTDCAtexi",
"name":"Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ttdca_e":-1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1535",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TTDCAtexi"
]
},
"annotation":{
"bigg.reaction":[
"TTDCAtexi"
],
"metanetx.reaction":[
"MNXR99092"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TTDCEAtexi",
"name":"Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ttdcea_e":-1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1535",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TTDCEAtexi"
]
},
"annotation":{
"bigg.reaction":[
"TTDCEAtexi"
],
"metanetx.reaction":[
"MNXR99096"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TUNGSabcpp",
"name":"Tungstate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"tungs_c":1.0,
"tungs_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"(Gmet_1903 and Gmet_1906 and Gmet_1905 and Gmet_1904) or (Gmet_0512 and Gmet_0513 and Gmet_0514) or (Gmet_1041 and Gmet_1040 and Gmet_1039)",
"objective_coefficient":-0.00658902479199844,
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"TUNGSabcpp"
]
},
"annotation":{
"bigg.reaction":[
"TUNGSabcpp"
],
"biocyc":[
"META:TRANS-RXN-242B"
],
"ec-code":[
"3.6.3.55"
],
"metanetx.reaction":[
"MNXR104978"
],
"rhea":[
"35030#2",
"35028#2",
"35027#2",
"35029#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09333",
"rxn13756"
]
}
},
{
"id":"TUNGStex",
"name":"Tungstate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tungs_e":-1.0,
"tungs_p":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1832 or Gmet_2727",
"subsystem":"Transport, Outer Membrane",
"notes":{
"original_bigg_ids":[
"TUNGStex"
]
},
"annotation":{
"bigg.reaction":[
"TUNGStex"
],
"metanetx.reaction":[
"MNXR104979"
],
"rhea":[
"32842",
"32841",
"32840",
"32839"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09334"
]
}
},
{
"id":"TYRL",
"name":"Tyrosine lyase",
"metabolites":{
"4crsol_c":1.0,
"amet_c":-1.0,
"dad_5_c":1.0,
"dhgly_c":1.0,
"h_c":1.0,
"met__L_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"tyr__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2934",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"TYRL"
]
},
"annotation":{
"bigg.reaction":[
"TYRL"
],
"biocyc":[
"META:RXN-11319"
],
"ec-code":[
"4.1.99.19"
],
"metanetx.reaction":[
"MNXR104993"
],
"rhea":[
"26361",
"26363",
"26362",
"26364"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TYRTA",
"name":"Tyrosine transaminase",
"metabolites":{
"34hpp_c":1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"tyr__L_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3325 or Gmet_3433 or Gmet_0732",
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"TYRTA"
]
},
"annotation":{
"bigg.reaction":[
"TYRTA"
],
"biocyc":[
"META:TYROSINE-AMINOTRANSFERASE-RXN"
],
"ec-code":[
"2.6.1.57",
"2.6.1.5",
"2.6.1.9",
"2.6.1.1"
],
"kegg.reaction":[
"R00734"
],
"metanetx.reaction":[
"MNXR105000"
],
"reactome.reaction":[
"R-BTA-517444",
"R-ATH-517444",
"R-DRE-71155",
"R-MMU-517444",
"R-TGU-517444",
"R-CEL-517444",
"R-DRE-517444",
"R-BTA-71155",
"R-HSA-517444",
"R-CFA-71155",
"R-OSA-71155",
"R-XTR-71155",
"R-SSC-71155",
"R-SCE-71155",
"R-SCE-517444",
"R-XTR-517444",
"R-HSA-71155",
"R-DME-517444",
"R-RNO-517444",
"R-ATH-71155",
"R-GGA-517444",
"R-MMU-71155",
"R-DDI-517444",
"R-CFA-517444",
"R-OSA-517444",
"R-SSC-517444",
"R-DME-71155",
"R-GGA-71155",
"R-TGU-71155",
"R-CEL-71155",
"R-DDI-71155",
"R-RNO-71155"
],
"rhea":[
"15094",
"15096",
"15093",
"15095"
],
"sabiork":[
"1097"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00527"
]
}
},
{
"id":"TYRTRS",
"name":"Tyrosyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnatyr_c":-1.0,
"tyr__L_c":-1.0,
"tyrtrna_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1182",
"objective_coefficient":-0.110036714026373,
"subsystem":"Amino Acid Metabolism",
"notes":{
"original_bigg_ids":[
"TYRTRS"
]
},
"annotation":{
"bigg.reaction":[
"TYRTRS"
],
"ec-code":[
"6.1.1.1"
],
"kegg.reaction":[
"R02918"
],
"metanetx.reaction":[
"MNXR105001"
],
"reactome.reaction":[
"R-HSA-379980",
"R-HSA-380170"
],
"sabiork":[
"354"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06280"
]
}
},
{
"id":"U23GAAT",
"name":"UDP-3-O-(3-hydroxymyristoyl)glucosamine acyltransferase",
"metabolites":{
"3hmrsACP_c":-1.0,
"ACP_c":1.0,
"h_c":1.0,
"u23ga_c":1.0,
"u3hga_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2355",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"U23GAAT"
]
},
"annotation":{
"bigg.reaction":[
"U23GAAT"
],
"biocyc":[
"META:UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN"
],
"ec-code":[
"2.3.1.191"
],
"kegg.reaction":[
"R04550"
],
"metanetx.reaction":[
"MNXR105007"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06723"
]
}
},
{
"id":"U23GAATN",
"name":"UDP-3-N-(3-hydroxymyristoyl)glucosediamine 2-N-acyltransferase",
"metabolites":{
"3hmrsACP_c":-1.0,
"ACP_c":1.0,
"h_c":1.0,
"u23gn_c":1.0,
"u3hgn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2355",
"objective_coefficient":-0.868598193205184,
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"U23GAATN"
]
},
"annotation":{
"bigg.reaction":[
"U23GAATN"
],
"metanetx.reaction":[
"MNXR105008"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UAAGDS",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase",
"metabolites":{
"26dap__M_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uamag_c":-1.0,
"ugmd_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0407",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAAGDS"
]
},
"annotation":{
"bigg.reaction":[
"UAAGDS"
],
"ec-code":[
"6.3.2.13"
],
"metanetx.reaction":[
"MNXR105013"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UACGAMDH",
"name":"UDP-N-acetylglucosamine 3-dehydrogenase, NAD-dependent",
"metabolites":{
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"uacgam_c":-1.0,
"uacgamo_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2352",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UACGAMDH"
]
},
"annotation":{
"bigg.reaction":[
"UACGAMDH"
],
"metanetx.reaction":[
"MNXR105018"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UACGAMOAT",
"name":"UDP-2-acetamido-2-deoxy-alpha-D-ribo-hexopyranos-3-ulose 3-aminotransferase",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"uacgamo_c":-1.0,
"uacgnn_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2351",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UACGAMOAT"
]
},
"annotation":{
"bigg.reaction":[
"UACGAMOAT"
],
"metanetx.reaction":[
"MNXR105019"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UACMAMO",
"name":"UDP-N-acetyl-D-mannosamine oxidoreductase",
"metabolites":{
"h2o_c":-1.0,
"h_c":3.0,
"nad_c":-2.0,
"nadh_c":2.0,
"uacmam_c":-1.0,
"uacmamu_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1994",
"objective_coefficient":-0.197011841280751,
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UACMAMO"
]
},
"annotation":{
"bigg.reaction":[
"UACMAMO"
],
"biocyc":[
"META:UDPMANNACADEHYDROG-RXN"
],
"ec-code":[
"1.1.1.336"
],
"kegg.reaction":[
"R03317"
],
"metanetx.reaction":[
"MNXR141283"
],
"rhea":[
"25782",
"25780",
"25783",
"25781"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02377"
]
}
},
{
"id":"UAG2E",
"name":"UDP-N-acetylglucosamine 2-epimerase",
"metabolites":{
"uacgam_c":-1.0,
"uacmam_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1489 or Gmet_1504",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAG2E"
]
},
"annotation":{
"bigg.reaction":[
"UAG2E"
],
"biocyc":[
"META:UDPGLCNACEPIM-RXN"
],
"ec-code":[
"5.1.3.14"
],
"kegg.reaction":[
"R00420"
],
"metanetx.reaction":[
"MNXR141025"
],
"rhea":[
"17214",
"17215",
"17213",
"17216"
],
"sabiork":[
"875"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00297"
]
}
},
{
"id":"UAGAAT",
"name":"UDP-N-acetylglucosamine acyltransferase",
"metabolites":{
"3hmrsACP_c":-1.0,
"ACP_c":1.0,
"u3aga_c":1.0,
"uacgam_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2353 or Gmet_2567",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UAGAAT"
]
},
"annotation":{
"bigg.reaction":[
"UAGAAT"
],
"biocyc":[
"META:UDPNACETYLGLUCOSAMACYLTRANS-RXN"
],
"ec-code":[
"2.3.1.129"
],
"kegg.reaction":[
"R04567"
],
"metanetx.reaction":[
"MNXR105028"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06729"
]
}
},
{
"id":"UAGAATN",
"name":"UDP-2-N-acetylglucose-2,3-diamine acyltransferase",
"metabolites":{
"3hmrsACP_c":-1.0,
"ACP_c":1.0,
"h_c":1.0,
"u3agn_c":1.0,
"uacgnn_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2353 or Gmet_2567",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UAGAATN"
]
},
"annotation":{
"bigg.reaction":[
"UAGAATN"
],
"metanetx.reaction":[
"MNXR105029"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UAGCVT",
"name":"UDP-N-acetylglucosamine 1-carboxyvinyltransferase",
"metabolites":{
"pep_c":-1.0,
"pi_c":1.0,
"uaccg_c":1.0,
"uacgam_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0382",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAGCVT"
]
},
"annotation":{
"bigg.reaction":[
"UAGCVT"
],
"biocyc":[
"META:UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN"
],
"ec-code":[
"2.5.1.7"
],
"kegg.reaction":[
"R00660"
],
"metanetx.reaction":[
"MNXR105032"
],
"rhea":[
"18681",
"18682",
"18683",
"18684"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00461"
]
}
},
{
"id":"UAGDP",
"name":"UDP-N-acetylglucosamine diphosphorylase",
"metabolites":{
"acgam1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0,
"uacgam_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0103",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAGDP"
]
},
"annotation":{
"bigg.reaction":[
"UAGDP"
],
"ec-code":[
"2.7.7.23"
],
"metanetx.reaction":[
"MNXR105033"
],
"reactome.reaction":[
"R-CFA-446204",
"R-DME-446204",
"R-HSA-446204",
"R-PFA-446204",
"R-XTR-446204",
"R-ATH-446204",
"R-OSA-446204",
"R-TGU-446204",
"R-DDI-446204",
"R-SCE-446204",
"R-GGA-446204",
"R-SSC-446204",
"R-DRE-446204",
"R-MMU-446204",
"R-RNO-446204",
"R-CEL-446204",
"R-SPO-446204",
"R-BTA-446204"
],
"sabiork":[
"870"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00293"
]
}
},
{
"id":"UAGPT3",
"name":"UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase",
"metabolites":{
"h_c":1.0,
"uaagmda_c":1.0,
"uacgam_c":-1.0,
"uagmda_c":-1.0,
"udp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0412",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAGPT3"
]
},
"annotation":{
"bigg.reaction":[
"UAGPT3"
],
"biocyc":[
"META:NACGLCTRANS-RXN"
],
"ec-code":[
"2.4.1.227"
],
"kegg.reaction":[
"R05032",
"R06174"
],
"metanetx.reaction":[
"MNXR139325"
],
"rhea":[
"31228",
"31227",
"31229",
"31230"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03408"
]
}
},
{
"id":"UAMAGS",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glu__D_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uama_c":-1.0,
"uamag_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0410",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAMAGS"
]
},
"annotation":{
"bigg.reaction":[
"UAMAGS"
],
"biocyc":[
"META:UDP-NACMURALA-GLU-LIG-RXN"
],
"ec-code":[
"6.3.2.9"
],
"kegg.reaction":[
"R02783"
],
"metanetx.reaction":[
"MNXR105038"
],
"rhea":[
"16430",
"16429",
"16431",
"16432"
],
"sabiork":[
"2659"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02008",
"rxn11252"
]
}
},
{
"id":"UAMAS",
"name":"UDP-N-acetylmuramoyl-L-alanine synthetase",
"metabolites":{
"adp_c":1.0,
"ala__L_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uama_c":1.0,
"uamr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0413",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAMAS"
]
},
"annotation":{
"bigg.reaction":[
"UAMAS"
],
"biocyc":[
"META:UDP-NACMUR-ALA-LIG-RXN"
],
"ec-code":[
"6.3.2.8"
],
"kegg.reaction":[
"R03193"
],
"metanetx.reaction":[
"MNXR141024"
],
"rhea":[
"23372",
"23374",
"23373",
"23375"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11251",
"rxn02286"
]
}
},
{
"id":"UAPGR",
"name":"UDP-N-acetylenolpyruvoylglucosamine reductase",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"uaccg_c":-1.0,
"uamr_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0414",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAPGR"
]
},
"annotation":{
"bigg.reaction":[
"UAPGR"
],
"biocyc":[
"META:UDPNACETYLMURAMATEDEHYDROG-RXN"
],
"ec-code":[
"1.3.1.98"
],
"kegg.reaction":[
"R03192"
],
"metanetx.reaction":[
"MNXR141027"
],
"rhea":[
"12251",
"12250",
"12248",
"12249"
],
"sabiork":[
"3021"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02285"
]
}
},
{
"id":"UDCPDP",
"name":"Undecaprenyl-diphosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"udcpdp_c":-1.0,
"udcpp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3133 or Gmet_0690",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPDP"
]
},
"annotation":{
"bigg.reaction":[
"UDCPDP"
],
"metanetx.reaction":[
"MNXR105042"
],
"rhea":[
"17069",
"17070",
"17072",
"17071"
],
"sabiork":[
"5225"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPDPS",
"name":"Undecaprenyl diphosphate synthase",
"metabolites":{
"frdp_c":-1.0,
"ipdp_c":-8.0,
"ppi_c":8.0,
"udcpdp_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1254",
"subsystem":"Vitamins and Cofactor Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPDPS"
]
},
"annotation":{
"bigg.reaction":[
"UDCPDPS"
],
"biocyc":[
"META:RXN-9138"
],
"ec-code":[
"2.5.1",
"2.5.1.M1",
"2.5.1.31"
],
"metanetx.reaction":[
"MNXR105043"
],
"sabiork":[
"12133"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPDPpp",
"name":"Undecaprenyl-diphosphatase (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"h_p":1.0,
"pi_p":1.0,
"udcpdp_p":-1.0,
"udcpp_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0690 or Gmet_3133",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPDPpp"
]
},
"annotation":{
"bigg.reaction":[
"UDCPDPpp"
],
"metanetx.reaction":[
"MNXR105042"
],
"rhea":[
"17069",
"17070",
"17072",
"17071"
],
"sabiork":[
"5225"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPPtppi",
"name":"Undecaprenyl phosphate transport (cytoplasm to periplasm)",
"metabolites":{
"udcpp_c":1.0,
"udcpp_p":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UDCPPtppi"
]
},
"annotation":{
"bigg.reaction":[
"UDCPPtppi"
],
"metanetx.reaction":[
"MNXR105045"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09346"
]
}
},
{
"id":"UDPG4E",
"name":"UDPglucose 4-epimerase",
"metabolites":{
"udpg_c":-1.0,
"udpgal_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2329 or Gmet_1486",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UDPG4E"
]
},
"annotation":{
"bigg.reaction":[
"UDPG4E"
],
"biocyc":[
"META:UDPGLUCEPIM-RXN"
],
"ec-code":[
"5.1.3.2"
],
"kegg.reaction":[
"R00291"
],
"metanetx.reaction":[
"MNXR143428"
],
"reactome.reaction":[
"R-CEL-70369",
"R-SSC-70369",
"R-ATH-70369",
"R-TGU-70369",
"R-HSA-70369",
"R-DRE-70369",
"R-RNO-70369",
"R-DDI-70369",
"R-BTA-70369",
"R-SCE-70369",
"R-DME-70369",
"R-SPO-70369",
"R-CFA-70369",
"R-MMU-70369",
"R-GGA-70369",
"R-XTR-70369",
"R-OSA-70369"
],
"rhea":[
"22170",
"22168",
"22169",
"22171"
],
"sabiork":[
"70",
"8974"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00214"
]
}
},
{
"id":"UDPGD",
"name":"UDPglucose 6-dehydrogenase",
"metabolites":{
"h2o_c":-1.0,
"h_c":3.0,
"nad_c":-2.0,
"nadh_c":2.0,
"udpg_c":-1.0,
"udpglcur_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1430",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDPGD"
]
},
"annotation":{
"bigg.reaction":[
"UDPGD"
],
"biocyc":[
"META:UGD-RXN"
],
"ec-code":[
"1.1.1.22"
],
"kegg.reaction":[
"R00286"
],
"metanetx.reaction":[
"MNXR141783"
],
"reactome.reaction":[
"R-TGU-173597",
"R-SSC-173597",
"R-OSA-173597",
"R-RNO-173597",
"R-GGA-173597",
"R-MMU-173597",
"R-XTR-173597",
"R-DRE-173597",
"R-CEL-173597",
"R-CFA-173597",
"R-BTA-173597",
"R-DME-173597",
"R-ATH-173597",
"R-HSA-173597"
],
"rhea":[
"23598",
"23599",
"23597",
"23596"
],
"sabiork":[
"8582",
"784"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00211"
]
}
},
{
"id":"UDPGDC",
"name":"UDP-glucuronate C-4'' decarboxylase",
"metabolites":{
"co2_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"udpLa4o_c":1.0,
"udpglcur_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0883",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UDPGDC"
]
},
"annotation":{
"bigg.reaction":[
"UDPGDC"
],
"biocyc":[
"META:RXN0-1861"
],
"ec-code":[
"1.1.1.305"
],
"kegg.reaction":[
"R07658"
],
"metanetx.reaction":[
"MNXR105064"
],
"rhea":[
"24703",
"24705",
"24704",
"24702"
],
"sabiork":[
"12883"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07473",
"rxn09351"
]
}
},
{
"id":"UDPGLDC",
"name":"UDP-D-glucuronate decarboxylase",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"udpglcur_c":-1.0,
"udpxyl_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_1431",
"objective_coefficient":-0.171973547071158,
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UDPGLDC"
]
},
"annotation":{
"bigg.reaction":[
"UDPGLDC"
],
"biocyc":[
"META:UDP-GLUCURONATE-DECARBOXYLASE-RXN"
],
"ec-code":[
"4.1.1.35"
],
"kegg.reaction":[
"R01384"
],
"metanetx.reaction":[
"MNXR105068"
],
"rhea":[
"23916",
"23919",
"23918",
"23917"
],
"sabiork":[
"9400"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01007"
]
}
},
{
"id":"UDPKAAT",
"name":"UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"udpLa4n_c":1.0,
"udpLa4o_c":-1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0886",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UDPKAAT"
]
},
"annotation":{
"bigg.reaction":[
"UDPKAAT"
],
"biocyc":[
"META:RXN0-1863"
],
"ec-code":[
"2.6.1.87"
],
"kegg.reaction":[
"R07659"
],
"metanetx.reaction":[
"MNXR105074"
],
"rhea":[
"24712",
"24710",
"24711",
"24713"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07474"
]
}
},
{
"id":"UGLT",
"name":"UDPglucose--hexose-1-phosphate uridylyltransferase",
"metabolites":{
"g1p_c":1.0,
"gal1p_c":-1.0,
"udpg_c":-1.0,
"udpgal_c":1.0
},
"lower_bound":-999999.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_3176",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UGLT"
]
},
"annotation":{
"bigg.reaction":[
"UGLT"
],
"biocyc":[
"META:GALACTURIDYLYLTRANS-RXN"
],
"ec-code":[
"2.7.7.12"
],
"kegg.reaction":[
"R00955"
],
"metanetx.reaction":[
"MNXR143436"
],
"reactome.reaction":[
"R-GGA-70361",
"R-DRE-70361",
"R-HSA-70361",
"R-XTR-70361",
"R-SPO-70361",
"R-SSC-70361",
"R-BTA-70361",
"R-ATH-70361",
"R-MMU-70361",
"R-RNO-70361",
"R-CFA-70361",
"R-DME-70361",
"R-OSA-70361",
"R-SCE-70361",
"R-TGU-70361",
"R-CEL-70361"
],
"rhea":[
"13989",
"13991",
"13992",
"13990"
],
"sabiork":[
"1268",
"8526"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00701"
]
}
},
{
"id":"UGMDDS",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase",
"metabolites":{
"adp_c":1.0,
"alaala_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ugmd_c":-1.0,
"ugmda_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0408",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UGMDDS"
]
},
"annotation":{
"bigg.reaction":[
"UGMDDS"
],
"ec-code":[
"6.3.2.10"
],
"metanetx.reaction":[
"MNXR105094"
],
"sabiork":[
"4284"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UHGADA",
"name":"UDP-3-O-acetylglucosamine deacetylase",
"metabolites":{
"ac_c":1.0,
"h2o_c":-1.0,
"u3aga_c":-1.0,
"u3hga_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2607",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UHGADA"
]
},
"annotation":{
"bigg.reaction":[
"UHGADA"
],
"biocyc":[
"META:UDPACYLGLCNACDEACETYL-RXN"
],
"ec-code":[
"3.5.1.108"
],
"kegg.reaction":[
"R04587"
],
"metanetx.reaction":[
"MNXR105110"
],
"rhea":[
"25212",
"25209",
"25211",
"25210"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03146"
]
}
},
{
"id":"UHGADAN",
"name":"UDP-3-N-2-N-acetylglucosediamine deacetylase",
"metabolites":{
"ac_c":1.0,
"h2o_c":-1.0,
"u3agn_c":-1.0,
"u3hgn_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_2607",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"UHGADAN"
]
},
"annotation":{
"bigg.reaction":[
"UHGADAN"
],
"metanetx.reaction":[
"MNXR105111"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ULA4NFT",
"name":"UDP-L-Ara4N formyltransferase",
"metabolites":{
"10fthf_c":-1.0,
"h_c":1.0,
"thf_c":1.0,
"udpLa4fn_c":1.0,
"udpLa4n_c":-1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"Gmet_0884",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"ULA4NFT"
]
},
"annotation":{
"bigg.reaction":[
"ULA4NFT"
],
"ec-code":[
"2.1.2.13"
],
"kegg.reaction":[
"R07660"
],
"metanetx.reaction":[
"MNXR105113"
],
"rhea":[
"24708",
"24706",
"24709",
"24707"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ULA4Ntppi",
"name":"Transport (cytoplasm to periplasm)",
"metabolites":{
"uLa4n_c":-1.0,
"uLa4n_p":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis / Recycling",
"notes":{
"original_bigg_ids":[
"ULA4Ntppi"
]
},
"annotation":{
"bigg.reaction":[
"ULA4Ntppi"
],
"metanetx.reaction":[
"MNXR105114"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09357"
]
}
},
{
"id":"UM3PL",
"name":"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase",
"metabolites":{
"LalaDgluMdap_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uamr_c":-1.0,
"ugmd_c":1.0
},
"lower_bound":0.0,
"upper_bound":999999.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"UM3PL"
]
},
"annotation":{
"bigg.reaction":[
"UM3PL"
],
"metanetx.reaction":[
"MNXR143440"
],
"sbo":"SBO:0000176"
}
}
],
"genes":[
{
"id":"Gmet_0608",
"name":"argC",
"notes":{
"original_bigg_ids":[
"Gmet_0608"
]
},
"annotation":{
"ncbigi":[
"78193084"
],
"refseq_locus_tag":[
"Gmet_0608"
],
"refseq_name":[
"argC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1294",
"name":"ahcY",
"notes":{
"original_bigg_ids":[
"Gmet_1294"
]
},
"annotation":{
"ncbigi":[
"78193763"
],
"refseq_locus_tag":[
"Gmet_1294"
],
"refseq_name":[
"ahcY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2905",
"name":"purH",
"notes":{
"original_bigg_ids":[
"Gmet_2905"
]
},
"annotation":{
"ncbigi":[
"78195356"
],
"refseq_locus_tag":[
"Gmet_2905"
],
"refseq_name":[
"purH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1053",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1053"
]
},
"annotation":{
"ncbigi":[
"78193526"
],
"refseq_locus_tag":[
"Gmet_1053"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1046",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1046"
]
},
"annotation":{
"ncbigi":[
"78193519"
],
"refseq_locus_tag":[
"Gmet_1046"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1904",
"name":"cysW",
"notes":{
"original_bigg_ids":[
"Gmet_1904"
]
},
"annotation":{
"ncbigi":[
"78194366"
],
"refseq_locus_tag":[
"Gmet_1904"
],
"refseq_name":[
"cysW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2903",
"name":"purE",
"notes":{
"original_bigg_ids":[
"Gmet_2903"
]
},
"annotation":{
"ncbigi":[
"78195354"
],
"refseq_locus_tag":[
"Gmet_2903"
],
"refseq_name":[
"purE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2769",
"name":"sucA",
"notes":{
"original_bigg_ids":[
"Gmet_2769"
]
},
"annotation":{
"ncbigi":[
"78195220"
],
"refseq_locus_tag":[
"Gmet_2769"
],
"refseq_name":[
"sucA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2764",
"name":"lpdA-1",
"notes":{
"original_bigg_ids":[
"Gmet_2764"
]
},
"annotation":{
"ncbigi":[
"78195215"
],
"refseq_locus_tag":[
"Gmet_2764"
],
"refseq_name":[
"lpdA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1613",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1613"
]
},
"annotation":{
"ncbigi":[
"78194077"
],
"refseq_locus_tag":[
"Gmet_1613"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1896",
"name":"lpdA-2",
"notes":{
"original_bigg_ids":[
"Gmet_1896"
]
},
"annotation":{
"ncbigi":[
"78194358"
],
"refseq_locus_tag":[
"Gmet_1896"
],
"refseq_name":[
"lpdA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2732",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2732"
]
},
"annotation":{
"ncbigi":[
"78195183"
],
"refseq_locus_tag":[
"Gmet_2732"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2766",
"name":"sucB",
"notes":{
"original_bigg_ids":[
"Gmet_2766"
]
},
"annotation":{
"ncbigi":[
"78195217"
],
"refseq_locus_tag":[
"Gmet_2766"
],
"refseq_name":[
"sucB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2731",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2731"
]
},
"annotation":{
"ncbigi":[
"78195182"
],
"refseq_locus_tag":[
"Gmet_2731"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0415",
"name":"ddl/ftsQ",
"notes":{
"original_bigg_ids":[
"Gmet_0415"
]
},
"annotation":{
"ncbigi":[
"78192891"
],
"refseq_locus_tag":[
"Gmet_0415"
],
"refseq_name":[
"ddl/ftsQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2689",
"name":"gltA",
"notes":{
"original_bigg_ids":[
"Gmet_2689"
]
},
"annotation":{
"ncbigi":[
"78195140"
],
"refseq_locus_tag":[
"Gmet_2689"
],
"refseq_name":[
"gltA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1099",
"name":"ald",
"notes":{
"original_bigg_ids":[
"Gmet_1099"
]
},
"annotation":{
"ncbigi":[
"78193572"
],
"refseq_locus_tag":[
"Gmet_1099"
],
"refseq_name":[
"ald"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2908",
"name":"alr",
"notes":{
"original_bigg_ids":[
"Gmet_2908"
]
},
"annotation":{
"ncbigi":[
"78195359"
],
"refseq_locus_tag":[
"Gmet_2908"
],
"refseq_name":[
"alr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3173",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3173"
]
},
"annotation":{
"ncbigi":[
"78195619"
],
"refseq_locus_tag":[
"Gmet_3173"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0201",
"name":"alaS",
"notes":{
"original_bigg_ids":[
"Gmet_0201"
]
},
"annotation":{
"ncbigi":[
"78192680"
],
"refseq_locus_tag":[
"Gmet_0201"
],
"refseq_name":[
"alaS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0789",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0789"
]
},
"annotation":{
"ncbigi":[
"78193264"
],
"refseq_locus_tag":[
"Gmet_0789"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3524",
"name":"tadA",
"notes":{
"original_bigg_ids":[
"Gmet_3524"
]
},
"annotation":{
"ncbigi":[
"78195962"
],
"refseq_locus_tag":[
"Gmet_3524"
],
"refseq_name":[
"tadA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0086",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0086"
]
},
"annotation":{
"ncbigi":[
"78192568"
],
"refseq_locus_tag":[
"Gmet_0086"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2727",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2727"
]
},
"annotation":{
"ncbigi":[
"78195178"
],
"refseq_locus_tag":[
"Gmet_2727"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1832",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1832"
]
},
"annotation":{
"ncbigi":[
"78194294"
],
"refseq_locus_tag":[
"Gmet_1832"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1697",
"name":"fabZ-1",
"notes":{
"original_bigg_ids":[
"Gmet_1697"
]
},
"annotation":{
"ncbigi":[
"403378059"
],
"refseq_locus_tag":[
"Gmet_1697"
],
"refseq_name":[
"fabZ-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2391",
"name":"malQ",
"notes":{
"original_bigg_ids":[
"Gmet_2391"
]
},
"annotation":{
"ncbigi":[
"78194849"
],
"refseq_locus_tag":[
"Gmet_2391"
],
"refseq_name":[
"malQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0903",
"name":"nspC",
"notes":{
"original_bigg_ids":[
"Gmet_0903"
]
},
"annotation":{
"ncbigi":[
"78193378"
],
"refseq_locus_tag":[
"Gmet_0903"
],
"refseq_name":[
"nspC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0902",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0902"
]
},
"annotation":{
"ncbigi":[
"78193377"
],
"refseq_locus_tag":[
"Gmet_0902"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1580",
"name":"bioA",
"notes":{
"original_bigg_ids":[
"Gmet_1580"
]
},
"annotation":{
"ncbigi":[
"78194045"
],
"refseq_locus_tag":[
"Gmet_1580"
],
"refseq_name":[
"bioA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2224",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2224"
]
},
"annotation":{
"ncbigi":[
"78194684"
],
"refseq_locus_tag":[
"Gmet_2224"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2354",
"name":"fabZ-2",
"notes":{
"original_bigg_ids":[
"Gmet_2354"
]
},
"annotation":{
"ncbigi":[
"78194812"
],
"refseq_locus_tag":[
"Gmet_2354"
],
"refseq_name":[
"fabZ-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1167",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1167"
]
},
"annotation":{
"ncbigi":[
"78193638"
],
"refseq_locus_tag":[
"Gmet_1167"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1717",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1717"
]
},
"annotation":{
"ncbigi":[
"78194181"
],
"refseq_locus_tag":[
"Gmet_1717"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2207",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2207"
]
},
"annotation":{
"ncbigi":[
"78194667"
],
"refseq_locus_tag":[
"Gmet_2207"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2910",
"name":"thiC-1",
"notes":{
"original_bigg_ids":[
"Gmet_2910"
]
},
"annotation":{
"ncbigi":[
"78195361"
],
"refseq_locus_tag":[
"Gmet_2910"
],
"refseq_name":[
"thiC-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1716",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1716"
]
},
"annotation":{
"ncbigi":[
"78194180"
],
"refseq_locus_tag":[
"Gmet_1716"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2072",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2072"
]
},
"annotation":{
"ncbigi":[
"78194534"
],
"refseq_locus_tag":[
"Gmet_2072"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2495",
"name":"trpD",
"notes":{
"original_bigg_ids":[
"Gmet_2495"
]
},
"annotation":{
"ncbigi":[
"78194951"
],
"refseq_locus_tag":[
"Gmet_2495"
],
"refseq_name":[
"trpD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2269",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2269"
]
},
"annotation":{
"ncbigi":[
"78194728"
],
"refseq_locus_tag":[
"Gmet_2269"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3284",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3284"
]
},
"annotation":{
"ncbigi":[
"78195730"
],
"refseq_locus_tag":[
"Gmet_3284"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2497",
"name":"trpE",
"notes":{
"original_bigg_ids":[
"Gmet_2497"
]
},
"annotation":{
"ncbigi":[
"78194953"
],
"refseq_locus_tag":[
"Gmet_2497"
],
"refseq_name":[
"trpE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2203",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2203"
]
},
"annotation":{
"ncbigi":[
"78194663"
],
"refseq_locus_tag":[
"Gmet_2203"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2496",
"name":"trpG",
"notes":{
"original_bigg_ids":[
"Gmet_2496"
]
},
"annotation":{
"ncbigi":[
"78194952"
],
"refseq_locus_tag":[
"Gmet_2496"
],
"refseq_name":[
"trpG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0842",
"name":"bioF",
"notes":{
"original_bigg_ids":[
"Gmet_0842"
]
},
"annotation":{
"ncbigi":[
"403377991"
],
"refseq_locus_tag":[
"Gmet_0842"
],
"refseq_name":[
"bioF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2195",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2195"
]
},
"annotation":{
"ncbigi":[
"78194655"
],
"refseq_locus_tag":[
"Gmet_2195"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3020",
"name":"plsY",
"notes":{
"original_bigg_ids":[
"Gmet_3020"
]
},
"annotation":{
"ncbigi":[
"78195468"
],
"refseq_locus_tag":[
"Gmet_3020"
],
"refseq_name":[
"plsY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2729",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2729"
]
},
"annotation":{
"ncbigi":[
"78195180"
],
"refseq_locus_tag":[
"Gmet_2729"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3031",
"name":"aplD",
"notes":{
"original_bigg_ids":[
"Gmet_3031"
]
},
"annotation":{
"ncbigi":[
"78195479"
],
"refseq_locus_tag":[
"Gmet_3031"
],
"refseq_name":[
"aplD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1575",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1575"
]
},
"annotation":{
"ncbigi":[
"78194040"
],
"refseq_locus_tag":[
"Gmet_1575"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1624",
"name":"ribD",
"notes":{
"original_bigg_ids":[
"Gmet_1624"
]
},
"annotation":{
"ncbigi":[
"78194088"
],
"refseq_locus_tag":[
"Gmet_1624"
],
"refseq_name":[
"ribD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1572",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1572"
]
},
"annotation":{
"ncbigi":[
"78194037"
],
"refseq_locus_tag":[
"Gmet_1572"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2858",
"name":"apr",
"notes":{
"original_bigg_ids":[
"Gmet_2858"
]
},
"annotation":{
"ncbigi":[
"78195309"
],
"refseq_locus_tag":[
"Gmet_2858"
],
"refseq_name":[
"apr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2057",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2057"
]
},
"annotation":{
"ncbigi":[
"78194519"
],
"refseq_locus_tag":[
"Gmet_2057"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3288",
"name":"aplB",
"notes":{
"original_bigg_ids":[
"Gmet_3288"
]
},
"annotation":{
"ncbigi":[
"78195734"
],
"refseq_locus_tag":[
"Gmet_3288"
],
"refseq_name":[
"aplB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0904",
"name":"speA",
"notes":{
"original_bigg_ids":[
"Gmet_0904"
]
},
"annotation":{
"ncbigi":[
"78193379"
],
"refseq_locus_tag":[
"Gmet_0904"
],
"refseq_name":[
"speA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0209",
"name":"argH",
"notes":{
"original_bigg_ids":[
"Gmet_0209"
]
},
"annotation":{
"ncbigi":[
"78192688"
],
"refseq_locus_tag":[
"Gmet_0209"
],
"refseq_name":[
"argH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0739",
"name":"aplA",
"notes":{
"original_bigg_ids":[
"Gmet_0739"
]
},
"annotation":{
"ncbigi":[
"403377983"
],
"refseq_locus_tag":[
"Gmet_0739"
],
"refseq_name":[
"aplA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2071",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2071"
]
},
"annotation":{
"ncbigi":[
"78194533"
],
"refseq_locus_tag":[
"Gmet_2071"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0206",
"name":"argG",
"notes":{
"original_bigg_ids":[
"Gmet_0206"
]
},
"annotation":{
"ncbigi":[
"78192685"
],
"refseq_locus_tag":[
"Gmet_0206"
],
"refseq_name":[
"argG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2212",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2212"
]
},
"annotation":{
"ncbigi":[
"78194672"
],
"refseq_locus_tag":[
"Gmet_2212"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1434",
"name":"argS",
"notes":{
"original_bigg_ids":[
"Gmet_1434"
]
},
"annotation":{
"ncbigi":[
"78193901"
],
"refseq_locus_tag":[
"Gmet_1434"
],
"refseq_name":[
"argS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0602",
"name":"leuB",
"notes":{
"original_bigg_ids":[
"Gmet_0602"
]
},
"annotation":{
"ncbigi":[
"78193078"
],
"refseq_locus_tag":[
"Gmet_0602"
],
"refseq_name":[
"leuB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0603",
"name":"asd-2",
"notes":{
"original_bigg_ids":[
"Gmet_0603"
]
},
"annotation":{
"ncbigi":[
"78193079"
],
"refseq_locus_tag":[
"Gmet_0603"
],
"refseq_name":[
"asd-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1694",
"name":"fabG-1",
"notes":{
"original_bigg_ids":[
"Gmet_1694"
]
},
"annotation":{
"ncbigi":[
"78194158"
],
"refseq_locus_tag":[
"Gmet_1694"
],
"refseq_name":[
"fabG-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0604",
"name":"asd-1",
"notes":{
"original_bigg_ids":[
"Gmet_0604"
]
},
"annotation":{
"ncbigi":[
"78193080"
],
"refseq_locus_tag":[
"Gmet_0604"
],
"refseq_name":[
"asd-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3305",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3305"
]
},
"annotation":{
"ncbigi":[
"78195751"
],
"refseq_locus_tag":[
"Gmet_3305"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2024",
"name":"asnB-2",
"notes":{
"original_bigg_ids":[
"Gmet_2024"
]
},
"annotation":{
"ncbigi":[
"78194486"
],
"refseq_locus_tag":[
"Gmet_2024"
],
"refseq_name":[
"asnB-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2196",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2196"
]
},
"annotation":{
"ncbigi":[
"78194656"
],
"refseq_locus_tag":[
"Gmet_2196"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2204",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2204"
]
},
"annotation":{
"ncbigi":[
"78194664"
],
"refseq_locus_tag":[
"Gmet_2204"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1601",
"name":"fabG-2",
"notes":{
"original_bigg_ids":[
"Gmet_1601"
]
},
"annotation":{
"ncbigi":[
"78194066"
],
"refseq_locus_tag":[
"Gmet_1601"
],
"refseq_name":[
"fabG-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1695",
"name":"fabF-1",
"notes":{
"original_bigg_ids":[
"Gmet_1695"
]
},
"annotation":{
"ncbigi":[
"78194159"
],
"refseq_locus_tag":[
"Gmet_1695"
],
"refseq_name":[
"fabF-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2172",
"name":"asnB-1",
"notes":{
"original_bigg_ids":[
"Gmet_2172"
]
},
"annotation":{
"ncbigi":[
"78194634"
],
"refseq_locus_tag":[
"Gmet_2172"
],
"refseq_name":[
"asnB-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1603",
"name":"fabF-2",
"notes":{
"original_bigg_ids":[
"Gmet_1603"
]
},
"annotation":{
"ncbigi":[
"78194068"
],
"refseq_locus_tag":[
"Gmet_1603"
],
"refseq_name":[
"fabF-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2412",
"name":"asnS",
"notes":{
"original_bigg_ids":[
"Gmet_2412"
]
},
"annotation":{
"ncbigi":[
"78194870"
],
"refseq_locus_tag":[
"Gmet_2412"
],
"refseq_name":[
"asnS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3272",
"name":"fabH-1",
"notes":{
"original_bigg_ids":[
"Gmet_3272"
]
},
"annotation":{
"ncbigi":[
"78195718"
],
"refseq_locus_tag":[
"Gmet_3272"
],
"refseq_name":[
"fabH-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1276",
"name":"pyrG",
"notes":{
"original_bigg_ids":[
"Gmet_1276"
]
},
"annotation":{
"ncbigi":[
"78193745"
],
"refseq_locus_tag":[
"Gmet_1276"
],
"refseq_name":[
"pyrG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0520",
"name":"arsB",
"notes":{
"original_bigg_ids":[
"Gmet_0520"
]
},
"annotation":{
"ncbigi":[
"78192996"
],
"refseq_locus_tag":[
"Gmet_0520"
],
"refseq_name":[
"arsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2772",
"name":"copA",
"notes":{
"original_bigg_ids":[
"Gmet_2772"
]
},
"annotation":{
"ncbigi":[
"78195223"
],
"refseq_locus_tag":[
"Gmet_2772"
],
"refseq_name":[
"copA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3131",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3131"
]
},
"annotation":{
"ncbigi":[
"78195578"
],
"refseq_locus_tag":[
"Gmet_3131"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1599",
"name":"fabH-2",
"notes":{
"original_bigg_ids":[
"Gmet_1599"
]
},
"annotation":{
"ncbigi":[
"78194064"
],
"refseq_locus_tag":[
"Gmet_1599"
],
"refseq_name":[
"fabH-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2215",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2215"
]
},
"annotation":{
"ncbigi":[
"78194675"
],
"refseq_locus_tag":[
"Gmet_2215"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1644",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1644"
]
},
"annotation":{
"ncbigi":[
"78194108"
],
"refseq_locus_tag":[
"Gmet_1644"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0491",
"name":"acdA",
"notes":{
"original_bigg_ids":[
"Gmet_0491"
]
},
"annotation":{
"ncbigi":[
"78192967"
],
"refseq_locus_tag":[
"Gmet_0491"
],
"refseq_name":[
"acdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1769",
"name":"pyrB",
"notes":{
"original_bigg_ids":[
"Gmet_1769"
]
},
"annotation":{
"ncbigi":[
"78194233"
],
"refseq_locus_tag":[
"Gmet_1769"
],
"refseq_name":[
"pyrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0492",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0492"
]
},
"annotation":{
"ncbigi":[
"78192968"
],
"refseq_locus_tag":[
"Gmet_0492"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0493",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0493"
]
},
"annotation":{
"ncbigi":[
"78192969"
],
"refseq_locus_tag":[
"Gmet_0493"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2136",
"name":"pcmT",
"notes":{
"original_bigg_ids":[
"Gmet_2136"
]
},
"annotation":{
"ncbigi":[
"78194598"
],
"refseq_locus_tag":[
"Gmet_2136"
],
"refseq_name":[
"pcmT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1880",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1880"
]
},
"annotation":{
"ncbigi":[
"78194342"
],
"refseq_locus_tag":[
"Gmet_1880"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2135",
"name":"pcmS",
"notes":{
"original_bigg_ids":[
"Gmet_2135"
]
},
"annotation":{
"ncbigi":[
"78194597"
],
"refseq_locus_tag":[
"Gmet_2135"
],
"refseq_name":[
"pcmS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2134",
"name":"pcmR",
"notes":{
"original_bigg_ids":[
"Gmet_2134"
]
},
"annotation":{
"ncbigi":[
"78194596"
],
"refseq_locus_tag":[
"Gmet_2134"
],
"refseq_name":[
"pcmR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1954",
"name":"nadB",
"notes":{
"original_bigg_ids":[
"Gmet_1954"
]
},
"annotation":{
"ncbigi":[
"78194416"
],
"refseq_locus_tag":[
"Gmet_1954"
],
"refseq_name":[
"nadB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3082",
"name":"aspA",
"notes":{
"original_bigg_ids":[
"Gmet_3082"
]
},
"annotation":{
"ncbigi":[
"78195529"
],
"refseq_locus_tag":[
"Gmet_3082"
],
"refseq_name":[
"aspA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0471",
"name":"thiC-2",
"notes":{
"original_bigg_ids":[
"Gmet_0471"
]
},
"annotation":{
"ncbigi":[
"78192947"
],
"refseq_locus_tag":[
"Gmet_0471"
],
"refseq_name":[
"thiC-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0250",
"name":"coxC",
"notes":{
"original_bigg_ids":[
"Gmet_0250"
]
},
"annotation":{
"ncbigi":[
"78192728"
],
"refseq_locus_tag":[
"Gmet_0250"
],
"refseq_name":[
"coxC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0252",
"name":"coxB",
"notes":{
"original_bigg_ids":[
"Gmet_0252"
]
},
"annotation":{
"ncbigi":[
"78192730"
],
"refseq_locus_tag":[
"Gmet_0252"
],
"refseq_name":[
"coxB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3433",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3433"
]
},
"annotation":{
"ncbigi":[
"78195878"
],
"refseq_locus_tag":[
"Gmet_3433"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0249",
"name":"coxA",
"notes":{
"original_bigg_ids":[
"Gmet_0249"
]
},
"annotation":{
"ncbigi":[
"78192727"
],
"refseq_locus_tag":[
"Gmet_0249"
],
"refseq_name":[
"coxA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0251",
"name":"coxD",
"notes":{
"original_bigg_ids":[
"Gmet_0251"
]
},
"annotation":{
"ncbigi":[
"78192729"
],
"refseq_locus_tag":[
"Gmet_0251"
],
"refseq_name":[
"coxD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1657",
"name":"queD",
"notes":{
"original_bigg_ids":[
"Gmet_1657"
]
},
"annotation":{
"ncbigi":[
"78194121"
],
"refseq_locus_tag":[
"Gmet_1657"
],
"refseq_name":[
"queD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3325",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3325"
]
},
"annotation":{
"ncbigi":[
"78195771"
],
"refseq_locus_tag":[
"Gmet_3325"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1278",
"name":"kdsD",
"notes":{
"original_bigg_ids":[
"Gmet_1278"
]
},
"annotation":{
"ncbigi":[
"78193747"
],
"refseq_locus_tag":[
"Gmet_1278"
],
"refseq_name":[
"kdsD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0470",
"name":"cbiA",
"notes":{
"original_bigg_ids":[
"Gmet_0470"
]
},
"annotation":{
"ncbigi":[
"78192946"
],
"refseq_locus_tag":[
"Gmet_0470"
],
"refseq_name":[
"cbiA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0732",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0732"
]
},
"annotation":{
"ncbigi":[
"78193207"
],
"refseq_locus_tag":[
"Gmet_0732"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1300",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1300"
]
},
"annotation":{
"ncbigi":[
"78193769"
],
"refseq_locus_tag":[
"Gmet_1300"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1719",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1719"
]
},
"annotation":{
"ncbigi":[
"78194183"
],
"refseq_locus_tag":[
"Gmet_1719"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2078",
"name":"bamJ",
"notes":{
"original_bigg_ids":[
"Gmet_2078"
]
},
"annotation":{
"ncbigi":[
"78194540"
],
"refseq_locus_tag":[
"Gmet_2078"
],
"refseq_name":[
"bamJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2074",
"name":"bamN",
"notes":{
"original_bigg_ids":[
"Gmet_2074"
]
},
"annotation":{
"ncbigi":[
"78194536"
],
"refseq_locus_tag":[
"Gmet_2074"
],
"refseq_name":[
"bamN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1357",
"name":"aspS",
"notes":{
"original_bigg_ids":[
"Gmet_1357"
]
},
"annotation":{
"ncbigi":[
"78193824"
],
"refseq_locus_tag":[
"Gmet_1357"
],
"refseq_name":[
"aspS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2197",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2197"
]
},
"annotation":{
"ncbigi":[
"78194657"
],
"refseq_locus_tag":[
"Gmet_2197"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2268",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2268"
]
},
"annotation":{
"ncbigi":[
"78194727"
],
"refseq_locus_tag":[
"Gmet_2268"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2988",
"name":"cysK-1",
"notes":{
"original_bigg_ids":[
"Gmet_2988"
]
},
"annotation":{
"ncbigi":[
"78195436"
],
"refseq_locus_tag":[
"Gmet_2988"
],
"refseq_name":[
"cysK-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0521",
"name":"arsC",
"notes":{
"original_bigg_ids":[
"Gmet_0521"
]
},
"annotation":{
"ncbigi":[
"78192997"
],
"refseq_locus_tag":[
"Gmet_0521"
],
"refseq_name":[
"arsC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"s_0001",
"name":"",
"notes":{
"original_bigg_ids":[
"s_0001"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0264",
"name":"cysM",
"notes":{
"original_bigg_ids":[
"Gmet_0264"
]
},
"annotation":{
"ncbigi":[
"78192742"
],
"refseq_locus_tag":[
"Gmet_0264"
],
"refseq_name":[
"cysM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2213",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2213"
]
},
"annotation":{
"ncbigi":[
"78194673"
],
"refseq_locus_tag":[
"Gmet_2213"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0383",
"name":"hisGS",
"notes":{
"original_bigg_ids":[
"Gmet_0383"
]
},
"annotation":{
"ncbigi":[
"78192859"
],
"refseq_locus_tag":[
"Gmet_0383"
],
"refseq_name":[
"hisGS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0144",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0144"
]
},
"annotation":{
"ncbigi":[
"78192626"
],
"refseq_locus_tag":[
"Gmet_0144"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1558",
"name":"cysK-2",
"notes":{
"original_bigg_ids":[
"Gmet_1558"
]
},
"annotation":{
"ncbigi":[
"78194025"
],
"refseq_locus_tag":[
"Gmet_1558"
],
"refseq_name":[
"cysK-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1898",
"name":"hisGL",
"notes":{
"original_bigg_ids":[
"Gmet_1898"
]
},
"annotation":{
"ncbigi":[
"78194360"
],
"refseq_locus_tag":[
"Gmet_1898"
],
"refseq_name":[
"hisGL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3410",
"name":"atpF",
"notes":{
"original_bigg_ids":[
"Gmet_3410"
]
},
"annotation":{
"ncbigi":[
"78195855"
],
"refseq_locus_tag":[
"Gmet_3410"
],
"refseq_name":[
"atpF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0699",
"name":"metC-2",
"notes":{
"original_bigg_ids":[
"Gmet_0699"
]
},
"annotation":{
"ncbigi":[
"78193174"
],
"refseq_locus_tag":[
"Gmet_0699"
],
"refseq_name":[
"metC-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3302",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3302"
]
},
"annotation":{
"ncbigi":[
"78195748"
],
"refseq_locus_tag":[
"Gmet_3302"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1045",
"name":"aorA",
"notes":{
"original_bigg_ids":[
"Gmet_1045"
]
},
"annotation":{
"ncbigi":[
"78193518"
],
"refseq_locus_tag":[
"Gmet_1045"
],
"refseq_name":[
"aorA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3360",
"name":"atpE",
"notes":{
"original_bigg_ids":[
"Gmet_3360"
]
},
"annotation":{
"ncbigi":[
"78195805"
],
"refseq_locus_tag":[
"Gmet_3360"
],
"refseq_name":[
"atpE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0698",
"name":"metC-1",
"notes":{
"original_bigg_ids":[
"Gmet_0698"
]
},
"annotation":{
"ncbigi":[
"78193173"
],
"refseq_locus_tag":[
"Gmet_0698"
],
"refseq_name":[
"metC-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3359",
"name":"atpB",
"notes":{
"original_bigg_ids":[
"Gmet_3359"
]
},
"annotation":{
"ncbigi":[
"78195804"
],
"refseq_locus_tag":[
"Gmet_3359"
],
"refseq_name":[
"atpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0466",
"name":"cobU",
"notes":{
"original_bigg_ids":[
"Gmet_0466"
]
},
"annotation":{
"ncbigi":[
"78192942"
],
"refseq_locus_tag":[
"Gmet_0466"
],
"refseq_name":[
"cobU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3408",
"name":"atpA",
"notes":{
"original_bigg_ids":[
"Gmet_3408"
]
},
"annotation":{
"ncbigi":[
"78195853"
],
"refseq_locus_tag":[
"Gmet_3408"
],
"refseq_name":[
"atpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0057",
"name":"cysS",
"notes":{
"original_bigg_ids":[
"Gmet_0057"
]
},
"annotation":{
"ncbigi":[
"78192539"
],
"refseq_locus_tag":[
"Gmet_0057"
],
"refseq_name":[
"cysS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3406",
"name":"atpD",
"notes":{
"original_bigg_ids":[
"Gmet_3406"
]
},
"annotation":{
"ncbigi":[
"78195851"
],
"refseq_locus_tag":[
"Gmet_3406"
],
"refseq_name":[
"atpD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0983",
"name":"accB",
"notes":{
"original_bigg_ids":[
"Gmet_0983"
]
},
"annotation":{
"ncbigi":[
"78193458"
],
"refseq_locus_tag":[
"Gmet_0983"
],
"refseq_name":[
"accB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3407",
"name":"atpG",
"notes":{
"original_bigg_ids":[
"Gmet_3407"
]
},
"annotation":{
"ncbigi":[
"78195852"
],
"refseq_locus_tag":[
"Gmet_3407"
],
"refseq_name":[
"atpG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0984",
"name":"accC",
"notes":{
"original_bigg_ids":[
"Gmet_0984"
]
},
"annotation":{
"ncbigi":[
"78193459"
],
"refseq_locus_tag":[
"Gmet_0984"
],
"refseq_name":[
"accC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3091",
"name":"macA",
"notes":{
"original_bigg_ids":[
"Gmet_3091"
]
},
"annotation":{
"ncbigi":[
"78195538"
],
"refseq_locus_tag":[
"Gmet_3091"
],
"refseq_name":[
"macA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3409",
"name":"atpH",
"notes":{
"original_bigg_ids":[
"Gmet_3409"
]
},
"annotation":{
"ncbigi":[
"78195854"
],
"refseq_locus_tag":[
"Gmet_3409"
],
"refseq_name":[
"atpH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3411",
"name":"atpX",
"notes":{
"original_bigg_ids":[
"Gmet_3411"
]
},
"annotation":{
"ncbigi":[
"78195856"
],
"refseq_locus_tag":[
"Gmet_3411"
],
"refseq_name":[
"atpX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2634",
"name":"cydD",
"notes":{
"original_bigg_ids":[
"Gmet_2634"
]
},
"annotation":{
"ncbigi":[
"78195086"
],
"refseq_locus_tag":[
"Gmet_2634"
],
"refseq_name":[
"cydD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2476",
"name":"accD",
"notes":{
"original_bigg_ids":[
"Gmet_2476"
]
},
"annotation":{
"ncbigi":[
"78194934"
],
"refseq_locus_tag":[
"Gmet_2476"
],
"refseq_name":[
"accD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3405",
"name":"atpC",
"notes":{
"original_bigg_ids":[
"Gmet_3405"
]
},
"annotation":{
"ncbigi":[
"78195850"
],
"refseq_locus_tag":[
"Gmet_3405"
],
"refseq_name":[
"atpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2633",
"name":"cydC",
"notes":{
"original_bigg_ids":[
"Gmet_2633"
]
},
"annotation":{
"ncbigi":[
"78195085"
],
"refseq_locus_tag":[
"Gmet_2633"
],
"refseq_name":[
"cydC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1987",
"name":"birA",
"notes":{
"original_bigg_ids":[
"Gmet_1987"
]
},
"annotation":{
"ncbigi":[
"78194449"
],
"refseq_locus_tag":[
"Gmet_1987"
],
"refseq_name":[
"birA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1216",
"name":"accA",
"notes":{
"original_bigg_ids":[
"Gmet_1216"
]
},
"annotation":{
"ncbigi":[
"78193686"
],
"refseq_locus_tag":[
"Gmet_1216"
],
"refseq_name":[
"accA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2143",
"name":"bamY",
"notes":{
"original_bigg_ids":[
"Gmet_2143"
]
},
"annotation":{
"ncbigi":[
"78194605"
],
"refseq_locus_tag":[
"Gmet_2143"
],
"refseq_name":[
"bamY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1930",
"name":"cydA",
"notes":{
"original_bigg_ids":[
"Gmet_1930"
]
},
"annotation":{
"ncbigi":[
"78194392"
],
"refseq_locus_tag":[
"Gmet_1930"
],
"refseq_name":[
"cydA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2084",
"name":"bamE",
"notes":{
"original_bigg_ids":[
"Gmet_2084"
]
},
"annotation":{
"ncbigi":[
"78194546"
],
"refseq_locus_tag":[
"Gmet_2084"
],
"refseq_name":[
"bamE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1929",
"name":"cydB",
"notes":{
"original_bigg_ids":[
"Gmet_1929"
]
},
"annotation":{
"ncbigi":[
"78194391"
],
"refseq_locus_tag":[
"Gmet_1929"
],
"refseq_name":[
"cydB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2161",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2161"
]
},
"annotation":{
"ncbigi":[
"78194623"
],
"refseq_locus_tag":[
"Gmet_2161"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0375",
"name":"ehrA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0375"
]
},
"annotation":{
"ncbigi":[
"78192851"
],
"refseq_locus_tag":[
"Gmet_0375"
],
"refseq_name":[
"ehrA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1505",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1505"
]
},
"annotation":{
"ncbigi":[
"78193972"
],
"refseq_locus_tag":[
"Gmet_1505"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0203",
"name":"argB",
"notes":{
"original_bigg_ids":[
"Gmet_0203"
]
},
"annotation":{
"ncbigi":[
"78192682"
],
"refseq_locus_tag":[
"Gmet_0203"
],
"refseq_name":[
"argB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2929",
"name":"cbcB",
"notes":{
"original_bigg_ids":[
"Gmet_2929"
]
},
"annotation":{
"ncbigi":[
"78195380"
],
"refseq_locus_tag":[
"Gmet_2929"
],
"refseq_name":[
"cbcB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2085",
"name":"bamD",
"notes":{
"original_bigg_ids":[
"Gmet_2085"
]
},
"annotation":{
"ncbigi":[
"78194547"
],
"refseq_locus_tag":[
"Gmet_2085"
],
"refseq_name":[
"bamD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0373",
"name":"ehrC-2",
"notes":{
"original_bigg_ids":[
"Gmet_0373"
]
},
"annotation":{
"ncbigi":[
"78192849"
],
"refseq_locus_tag":[
"Gmet_0373"
],
"refseq_name":[
"ehrC-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0371",
"name":"ehrL-2",
"notes":{
"original_bigg_ids":[
"Gmet_0371"
]
},
"annotation":{
"ncbigi":[
"78192847"
],
"refseq_locus_tag":[
"Gmet_0371"
],
"refseq_name":[
"ehrL-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0865",
"name":"cmk",
"notes":{
"original_bigg_ids":[
"Gmet_0865"
]
},
"annotation":{
"ncbigi":[
"78193340"
],
"refseq_locus_tag":[
"Gmet_0865"
],
"refseq_name":[
"cmk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0946",
"name":"argA",
"notes":{
"original_bigg_ids":[
"Gmet_0946"
]
},
"annotation":{
"ncbigi":[
"78193421"
],
"refseq_locus_tag":[
"Gmet_0946"
],
"refseq_name":[
"argA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2080",
"name":"bamH",
"notes":{
"original_bigg_ids":[
"Gmet_2080"
]
},
"annotation":{
"ncbigi":[
"78194542"
],
"refseq_locus_tag":[
"Gmet_2080"
],
"refseq_name":[
"bamH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2083",
"name":"bamF",
"notes":{
"original_bigg_ids":[
"Gmet_2083"
]
},
"annotation":{
"ncbigi":[
"403378084"
],
"refseq_locus_tag":[
"Gmet_2083"
],
"refseq_name":[
"bamF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0369",
"name":"ehrS-2",
"notes":{
"original_bigg_ids":[
"Gmet_0369"
]
},
"annotation":{
"ncbigi":[
"78192845"
],
"refseq_locus_tag":[
"Gmet_0369"
],
"refseq_name":[
"ehrS-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1261",
"name":"ilvN",
"notes":{
"original_bigg_ids":[
"Gmet_1261"
]
},
"annotation":{
"ncbigi":[
"78193730"
],
"refseq_locus_tag":[
"Gmet_1261"
],
"refseq_name":[
"ilvN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0536",
"name":"cbcM",
"notes":{
"original_bigg_ids":[
"Gmet_0536"
]
},
"annotation":{
"ncbigi":[
"403377961"
],
"refseq_locus_tag":[
"Gmet_0536"
],
"refseq_name":[
"cbcM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1802",
"name":"bamB-2",
"notes":{
"original_bigg_ids":[
"Gmet_1802"
]
},
"annotation":{
"ncbigi":[
"78194264"
],
"refseq_locus_tag":[
"Gmet_1802"
],
"refseq_name":[
"bamB-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1260",
"name":"ilvB",
"notes":{
"original_bigg_ids":[
"Gmet_1260"
]
},
"annotation":{
"ncbigi":[
"78193729"
],
"refseq_locus_tag":[
"Gmet_1260"
],
"refseq_name":[
"ilvB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2597",
"name":"ehrL-1",
"notes":{
"original_bigg_ids":[
"Gmet_2597"
]
},
"annotation":{
"ncbigi":[
"78195049"
],
"refseq_locus_tag":[
"Gmet_2597"
],
"refseq_name":[
"ehrL-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1811",
"name":"actB2",
"notes":{
"original_bigg_ids":[
"Gmet_1811"
]
},
"annotation":{
"ncbigi":[
"78194273"
],
"refseq_locus_tag":[
"Gmet_1811"
],
"refseq_name":[
"actB2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1924",
"name":"cbcX",
"notes":{
"original_bigg_ids":[
"Gmet_1924"
]
},
"annotation":{
"ncbigi":[
"78194386"
],
"refseq_locus_tag":[
"Gmet_1924"
],
"refseq_name":[
"cbcX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2086",
"name":"bamC-1",
"notes":{
"original_bigg_ids":[
"Gmet_2086"
]
},
"annotation":{
"ncbigi":[
"78194548"
],
"refseq_locus_tag":[
"Gmet_2086"
],
"refseq_name":[
"bamC-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0306",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0306"
]
},
"annotation":{
"ncbigi":[
"78192784"
],
"refseq_locus_tag":[
"Gmet_0306"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0305",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0305"
]
},
"annotation":{
"ncbigi":[
"78192783"
],
"refseq_locus_tag":[
"Gmet_0305"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0374",
"name":"ehrB-2",
"notes":{
"original_bigg_ids":[
"Gmet_0374"
]
},
"annotation":{
"ncbigi":[
"78192850"
],
"refseq_locus_tag":[
"Gmet_0374"
],
"refseq_name":[
"ehrB-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1923",
"name":"cbcW",
"notes":{
"original_bigg_ids":[
"Gmet_1923"
]
},
"annotation":{
"ncbigi":[
"78194385"
],
"refseq_locus_tag":[
"Gmet_1923"
],
"refseq_name":[
"cbcW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2601",
"name":"ehrA-1",
"notes":{
"original_bigg_ids":[
"Gmet_2601"
]
},
"annotation":{
"ncbigi":[
"78195053"
],
"refseq_locus_tag":[
"Gmet_2601"
],
"refseq_name":[
"ehrA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0538",
"name":"cbcO",
"notes":{
"original_bigg_ids":[
"Gmet_0538"
]
},
"annotation":{
"ncbigi":[
"78193014"
],
"refseq_locus_tag":[
"Gmet_0538"
],
"refseq_name":[
"cbcO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3585",
"name":"cbcQ",
"notes":{
"original_bigg_ids":[
"Gmet_3585"
]
},
"annotation":{
"ncbigi":[
"403377963"
],
"refseq_locus_tag":[
"Gmet_3585"
],
"refseq_name":[
"cbcQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1034",
"name":"ackA",
"notes":{
"original_bigg_ids":[
"Gmet_1034"
]
},
"annotation":{
"ncbigi":[
"78193507"
],
"refseq_locus_tag":[
"Gmet_1034"
],
"refseq_name":[
"ackA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2599",
"name":"ehrC-1",
"notes":{
"original_bigg_ids":[
"Gmet_2599"
]
},
"annotation":{
"ncbigi":[
"78195051"
],
"refseq_locus_tag":[
"Gmet_2599"
],
"refseq_name":[
"ehrC-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0455",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0455"
]
},
"annotation":{
"ncbigi":[
"78192931"
],
"refseq_locus_tag":[
"Gmet_0455"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0539",
"name":"cbcP",
"notes":{
"original_bigg_ids":[
"Gmet_0539"
]
},
"annotation":{
"ncbigi":[
"78193015"
],
"refseq_locus_tag":[
"Gmet_0539"
],
"refseq_name":[
"cbcP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0541",
"name":"cbcR",
"notes":{
"original_bigg_ids":[
"Gmet_0541"
]
},
"annotation":{
"ncbigi":[
"403377964"
],
"refseq_locus_tag":[
"Gmet_0541"
],
"refseq_name":[
"cbcR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0372",
"name":"ehrD-2",
"notes":{
"original_bigg_ids":[
"Gmet_0372"
]
},
"annotation":{
"ncbigi":[
"78192848"
],
"refseq_locus_tag":[
"Gmet_0372"
],
"refseq_name":[
"ehrD-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2081",
"name":"bamG",
"notes":{
"original_bigg_ids":[
"Gmet_2081"
]
},
"annotation":{
"ncbigi":[
"78194543"
],
"refseq_locus_tag":[
"Gmet_2081"
],
"refseq_name":[
"bamG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2596",
"name":"ehrS-1",
"notes":{
"original_bigg_ids":[
"Gmet_2596"
]
},
"annotation":{
"ncbigi":[
"78195048"
],
"refseq_locus_tag":[
"Gmet_2596"
],
"refseq_name":[
"ehrS-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2600",
"name":"ehrB-1",
"notes":{
"original_bigg_ids":[
"Gmet_2600"
]
},
"annotation":{
"ncbigi":[
"78195052"
],
"refseq_locus_tag":[
"Gmet_2600"
],
"refseq_name":[
"ehrB-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1922",
"name":"cbcV",
"notes":{
"original_bigg_ids":[
"Gmet_1922"
]
},
"annotation":{
"ncbigi":[
"78194384"
],
"refseq_locus_tag":[
"Gmet_1922"
],
"refseq_name":[
"cbcV"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0537",
"name":"cbcN",
"notes":{
"original_bigg_ids":[
"Gmet_0537"
]
},
"annotation":{
"ncbigi":[
"403377962"
],
"refseq_locus_tag":[
"Gmet_0537"
],
"refseq_name":[
"cbcN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1710",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1710"
]
},
"annotation":{
"ncbigi":[
"78194174"
],
"refseq_locus_tag":[
"Gmet_1710"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1803",
"name":"bamC-2",
"notes":{
"original_bigg_ids":[
"Gmet_1803"
]
},
"annotation":{
"ncbigi":[
"78194265"
],
"refseq_locus_tag":[
"Gmet_1803"
],
"refseq_name":[
"bamC-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3306",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3306"
]
},
"annotation":{
"ncbigi":[
"78195752"
],
"refseq_locus_tag":[
"Gmet_3306"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1715",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1715"
]
},
"annotation":{
"ncbigi":[
"78194179"
],
"refseq_locus_tag":[
"Gmet_1715"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2598",
"name":"ehrD-1",
"notes":{
"original_bigg_ids":[
"Gmet_2598"
]
},
"annotation":{
"ncbigi":[
"78195050"
],
"refseq_locus_tag":[
"Gmet_2598"
],
"refseq_name":[
"ehrD-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2198",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2198"
]
},
"annotation":{
"ncbigi":[
"78194658"
],
"refseq_locus_tag":[
"Gmet_2198"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1809",
"name":"actA",
"notes":{
"original_bigg_ids":[
"Gmet_1809"
]
},
"annotation":{
"ncbigi":[
"78194271"
],
"refseq_locus_tag":[
"Gmet_1809"
],
"refseq_name":[
"actA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2211",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2211"
]
},
"annotation":{
"ncbigi":[
"78194671"
],
"refseq_locus_tag":[
"Gmet_2211"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2087",
"name":"bamB-1",
"notes":{
"original_bigg_ids":[
"Gmet_2087"
]
},
"annotation":{
"ncbigi":[
"78194549"
],
"refseq_locus_tag":[
"Gmet_2087"
],
"refseq_name":[
"bamB-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3307",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3307"
]
},
"annotation":{
"ncbigi":[
"78195753"
],
"refseq_locus_tag":[
"Gmet_3307"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2270",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2270"
]
},
"annotation":{
"ncbigi":[
"78194729"
],
"refseq_locus_tag":[
"Gmet_2270"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1810",
"name":"actB1",
"notes":{
"original_bigg_ids":[
"Gmet_1810"
]
},
"annotation":{
"ncbigi":[
"78194272"
],
"refseq_locus_tag":[
"Gmet_1810"
],
"refseq_name":[
"actB1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2131",
"name":"pcmO",
"notes":{
"original_bigg_ids":[
"Gmet_2131"
]
},
"annotation":{
"ncbigi":[
"78194593"
],
"refseq_locus_tag":[
"Gmet_2131"
],
"refseq_name":[
"pcmO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1888",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1888"
]
},
"annotation":{
"ncbigi":[
"78194350"
],
"refseq_locus_tag":[
"Gmet_1888"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2199",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2199"
]
},
"annotation":{
"ncbigi":[
"78194659"
],
"refseq_locus_tag":[
"Gmet_2199"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1038",
"name":"moeA-1",
"notes":{
"original_bigg_ids":[
"Gmet_1038"
]
},
"annotation":{
"ncbigi":[
"78193511"
],
"refseq_locus_tag":[
"Gmet_1038"
],
"refseq_name":[
"moeA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1912",
"name":"acnB",
"notes":{
"original_bigg_ids":[
"Gmet_1912"
]
},
"annotation":{
"ncbigi":[
"78194374"
],
"refseq_locus_tag":[
"Gmet_1912"
],
"refseq_name":[
"acnB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1016",
"name":"acnA",
"notes":{
"original_bigg_ids":[
"Gmet_1016"
]
},
"annotation":{
"ncbigi":[
"78193491"
],
"refseq_locus_tag":[
"Gmet_1016"
],
"refseq_name":[
"acnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1168",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1168"
]
},
"annotation":{
"ncbigi":[
"78193639"
],
"refseq_locus_tag":[
"Gmet_1168"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2369",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2369"
]
},
"annotation":{
"ncbigi":[
"78194827"
],
"refseq_locus_tag":[
"Gmet_2369"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1804",
"name":"moeA-3",
"notes":{
"original_bigg_ids":[
"Gmet_1804"
]
},
"annotation":{
"ncbigi":[
"78194266"
],
"refseq_locus_tag":[
"Gmet_1804"
],
"refseq_name":[
"moeA-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2763",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2763"
]
},
"annotation":{
"ncbigi":[
"78195214"
],
"refseq_locus_tag":[
"Gmet_2763"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0204",
"name":"argD",
"notes":{
"original_bigg_ids":[
"Gmet_0204"
]
},
"annotation":{
"ncbigi":[
"78192683"
],
"refseq_locus_tag":[
"Gmet_0204"
],
"refseq_name":[
"argD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0336",
"name":"moeA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0336"
]
},
"annotation":{
"ncbigi":[
"78192812"
],
"refseq_locus_tag":[
"Gmet_0336"
],
"refseq_name":[
"moeA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1598",
"name":"plsX",
"notes":{
"original_bigg_ids":[
"Gmet_1598"
]
},
"annotation":{
"ncbigi":[
"78194063"
],
"refseq_locus_tag":[
"Gmet_1598"
],
"refseq_name":[
"plsX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2741",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2741"
]
},
"annotation":{
"ncbigi":[
"78195192"
],
"refseq_locus_tag":[
"Gmet_2741"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1062",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1062"
]
},
"annotation":{
"ncbigi":[
"78193535"
],
"refseq_locus_tag":[
"Gmet_1062"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0219",
"name":"lysA",
"notes":{
"original_bigg_ids":[
"Gmet_0219"
]
},
"annotation":{
"ncbigi":[
"78192698"
],
"refseq_locus_tag":[
"Gmet_0219"
],
"refseq_name":[
"lysA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0068",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0068"
]
},
"annotation":{
"ncbigi":[
"78192550"
],
"refseq_locus_tag":[
"Gmet_0068"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0300",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0300"
]
},
"annotation":{
"ncbigi":[
"403377943"
],
"refseq_locus_tag":[
"Gmet_0300"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1884",
"name":"acpS",
"notes":{
"original_bigg_ids":[
"Gmet_1884"
]
},
"annotation":{
"ncbigi":[
"78194346"
],
"refseq_locus_tag":[
"Gmet_1884"
],
"refseq_name":[
"acpS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2992",
"name":"dapF",
"notes":{
"original_bigg_ids":[
"Gmet_2992"
]
},
"annotation":{
"ncbigi":[
"78195440"
],
"refseq_locus_tag":[
"Gmet_2992"
],
"refseq_name":[
"dapF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1255",
"name":"cdsA",
"notes":{
"original_bigg_ids":[
"Gmet_1255"
]
},
"annotation":{
"ncbigi":[
"403378028"
],
"refseq_locus_tag":[
"Gmet_1255"
],
"refseq_name":[
"cdsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1419",
"name":"surE",
"notes":{
"original_bigg_ids":[
"Gmet_1419"
]
},
"annotation":{
"ncbigi":[
"78193886"
],
"refseq_locus_tag":[
"Gmet_1419"
],
"refseq_name":[
"surE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1626",
"name":"ribA",
"notes":{
"original_bigg_ids":[
"Gmet_1626"
]
},
"annotation":{
"ncbigi":[
"78194090"
],
"refseq_locus_tag":[
"Gmet_1626"
],
"refseq_name":[
"ribA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2340",
"name":"acsA",
"notes":{
"original_bigg_ids":[
"Gmet_2340"
]
},
"annotation":{
"ncbigi":[
"78194798"
],
"refseq_locus_tag":[
"Gmet_2340"
],
"refseq_name":[
"acsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1528",
"name":"bbsA",
"notes":{
"original_bigg_ids":[
"Gmet_1528"
]
},
"annotation":{
"ncbigi":[
"78193995"
],
"refseq_locus_tag":[
"Gmet_1528"
],
"refseq_name":[
"bbsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1581",
"name":"bioD",
"notes":{
"original_bigg_ids":[
"Gmet_1581"
]
},
"annotation":{
"ncbigi":[
"78194046"
],
"refseq_locus_tag":[
"Gmet_1581"
],
"refseq_name":[
"bioD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1529",
"name":"bbsB",
"notes":{
"original_bigg_ids":[
"Gmet_1529"
]
},
"annotation":{
"ncbigi":[
"78193996"
],
"refseq_locus_tag":[
"Gmet_1529"
],
"refseq_name":[
"bbsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3010",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3010"
]
},
"annotation":{
"ncbigi":[
"78195458"
],
"refseq_locus_tag":[
"Gmet_3010"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1582",
"name":"bioB",
"notes":{
"original_bigg_ids":[
"Gmet_1582"
]
},
"annotation":{
"ncbigi":[
"78194047"
],
"refseq_locus_tag":[
"Gmet_1582"
],
"refseq_name":[
"bioB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1535",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1535"
]
},
"annotation":{
"ncbigi":[
"78194002"
],
"refseq_locus_tag":[
"Gmet_1535"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2128",
"name":"pcmL/buk-2",
"notes":{
"original_bigg_ids":[
"Gmet_2128"
]
},
"annotation":{
"ncbigi":[
"78194590"
],
"refseq_locus_tag":[
"Gmet_2128"
],
"refseq_name":[
"pcmL/buk-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0486",
"name":"cbiB",
"notes":{
"original_bigg_ids":[
"Gmet_0486"
]
},
"annotation":{
"ncbigi":[
"78192962"
],
"refseq_locus_tag":[
"Gmet_0486"
],
"refseq_name":[
"cbiB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0485",
"name":"cbiH/cbiP",
"notes":{
"original_bigg_ids":[
"Gmet_0485"
]
},
"annotation":{
"ncbigi":[
"78192961"
],
"refseq_locus_tag":[
"Gmet_0485"
],
"refseq_name":[
"cbiH/cbiP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2106",
"name":"buk-1",
"notes":{
"original_bigg_ids":[
"Gmet_2106"
]
},
"annotation":{
"ncbigi":[
"78194568"
],
"refseq_locus_tag":[
"Gmet_2106"
],
"refseq_name":[
"buk-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2201",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2201"
]
},
"annotation":{
"ncbigi":[
"78194661"
],
"refseq_locus_tag":[
"Gmet_2201"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0346",
"name":"aroG-2",
"notes":{
"original_bigg_ids":[
"Gmet_0346"
]
},
"annotation":{
"ncbigi":[
"78192822"
],
"refseq_locus_tag":[
"Gmet_0346"
],
"refseq_name":[
"aroG-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0996",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0996"
]
},
"annotation":{
"ncbigi":[
"78193471"
],
"refseq_locus_tag":[
"Gmet_0996"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2375",
"name":"aroF",
"notes":{
"original_bigg_ids":[
"Gmet_2375"
]
},
"annotation":{
"ncbigi":[
"78194833"
],
"refseq_locus_tag":[
"Gmet_2375"
],
"refseq_name":[
"aroF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0647",
"name":"adk",
"notes":{
"original_bigg_ids":[
"Gmet_0647"
]
},
"annotation":{
"ncbigi":[
"403377975"
],
"refseq_locus_tag":[
"Gmet_0647"
],
"refseq_name":[
"adk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1900",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1900"
]
},
"annotation":{
"ncbigi":[
"78194362"
],
"refseq_locus_tag":[
"Gmet_1900"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0998",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0998"
]
},
"annotation":{
"ncbigi":[
"78193473"
],
"refseq_locus_tag":[
"Gmet_0998"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2683",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2683"
]
},
"annotation":{
"ncbigi":[
"78195134"
],
"refseq_locus_tag":[
"Gmet_2683"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0997",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0997"
]
},
"annotation":{
"ncbigi":[
"78193472"
],
"refseq_locus_tag":[
"Gmet_0997"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0468",
"name":"cobS",
"notes":{
"original_bigg_ids":[
"Gmet_0468"
]
},
"annotation":{
"ncbigi":[
"78192944"
],
"refseq_locus_tag":[
"Gmet_0468"
],
"refseq_name":[
"cobS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0024",
"name":"aroG-1",
"notes":{
"original_bigg_ids":[
"Gmet_0024"
]
},
"annotation":{
"ncbigi":[
"78192507"
],
"refseq_locus_tag":[
"Gmet_0024"
],
"refseq_name":[
"aroG-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1899",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1899"
]
},
"annotation":{
"ncbigi":[
"78194361"
],
"refseq_locus_tag":[
"Gmet_1899"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1901",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1901"
]
},
"annotation":{
"ncbigi":[
"78194363"
],
"refseq_locus_tag":[
"Gmet_1901"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2235",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2235"
]
},
"annotation":{
"ncbigi":[
"78194695"
],
"refseq_locus_tag":[
"Gmet_2235"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2327",
"name":"gmk",
"notes":{
"original_bigg_ids":[
"Gmet_2327"
]
},
"annotation":{
"ncbigi":[
"78194785"
],
"refseq_locus_tag":[
"Gmet_2327"
],
"refseq_name":[
"gmk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0048",
"name":"nudF",
"notes":{
"original_bigg_ids":[
"Gmet_0048"
]
},
"annotation":{
"ncbigi":[
"78192531"
],
"refseq_locus_tag":[
"Gmet_0048"
],
"refseq_name":[
"nudF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1523",
"name":"bbsG",
"notes":{
"original_bigg_ids":[
"Gmet_1523"
]
},
"annotation":{
"ncbigi":[
"78193990"
],
"refseq_locus_tag":[
"Gmet_1523"
],
"refseq_name":[
"bbsG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1790",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1790"
]
},
"annotation":{
"ncbigi":[
"78194254"
],
"refseq_locus_tag":[
"Gmet_1790"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0988",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0988"
]
},
"annotation":{
"ncbigi":[
"78193463"
],
"refseq_locus_tag":[
"Gmet_0988"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0049",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0049"
]
},
"annotation":{
"ncbigi":[
"403377926"
],
"refseq_locus_tag":[
"Gmet_0049"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1521",
"name":"bbsE",
"notes":{
"original_bigg_ids":[
"Gmet_1521"
]
},
"annotation":{
"ncbigi":[
"78193988"
],
"refseq_locus_tag":[
"Gmet_1521"
],
"refseq_name":[
"bbsE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2721",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2721"
]
},
"annotation":{
"ncbigi":[
"78195172"
],
"refseq_locus_tag":[
"Gmet_2721"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1170",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1170"
]
},
"annotation":{
"ncbigi":[
"78193641"
],
"refseq_locus_tag":[
"Gmet_1170"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1522",
"name":"bbsF",
"notes":{
"original_bigg_ids":[
"Gmet_1522"
]
},
"annotation":{
"ncbigi":[
"78193989"
],
"refseq_locus_tag":[
"Gmet_1522"
],
"refseq_name":[
"bbsF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1298",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1298"
]
},
"annotation":{
"ncbigi":[
"78193767"
],
"refseq_locus_tag":[
"Gmet_1298"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1538",
"name":"bssB",
"notes":{
"original_bigg_ids":[
"Gmet_1538"
]
},
"annotation":{
"ncbigi":[
"78194005"
],
"refseq_locus_tag":[
"Gmet_1538"
],
"refseq_name":[
"bssB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1541",
"name":"bssD",
"notes":{
"original_bigg_ids":[
"Gmet_1541"
]
},
"annotation":{
"ncbigi":[
"78194008"
],
"refseq_locus_tag":[
"Gmet_1541"
],
"refseq_name":[
"bssD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0840",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0840"
]
},
"annotation":{
"ncbigi":[
"78193315"
],
"refseq_locus_tag":[
"Gmet_0840"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1422",
"name":"apt",
"notes":{
"original_bigg_ids":[
"Gmet_1422"
]
},
"annotation":{
"ncbigi":[
"78193889"
],
"refseq_locus_tag":[
"Gmet_1422"
],
"refseq_name":[
"apt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1539",
"name":"bssA",
"notes":{
"original_bigg_ids":[
"Gmet_1539"
]
},
"annotation":{
"ncbigi":[
"78194006"
],
"refseq_locus_tag":[
"Gmet_1539"
],
"refseq_name":[
"bssA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1540",
"name":"bssC",
"notes":{
"original_bigg_ids":[
"Gmet_1540"
]
},
"annotation":{
"ncbigi":[
"78194007"
],
"refseq_locus_tag":[
"Gmet_1540"
],
"refseq_name":[
"bssC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1943",
"name":"purB",
"notes":{
"original_bigg_ids":[
"Gmet_1943"
]
},
"annotation":{
"ncbigi":[
"78194405"
],
"refseq_locus_tag":[
"Gmet_1943"
],
"refseq_name":[
"purB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3497",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3497"
]
},
"annotation":{
"ncbigi":[
"78195935"
],
"refseq_locus_tag":[
"Gmet_3497"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1573",
"name":"cobA",
"notes":{
"original_bigg_ids":[
"Gmet_1573"
]
},
"annotation":{
"ncbigi":[
"78194038"
],
"refseq_locus_tag":[
"Gmet_1573"
],
"refseq_name":[
"cobA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3260",
"name":"purA",
"notes":{
"original_bigg_ids":[
"Gmet_3260"
]
},
"annotation":{
"ncbigi":[
"78195706"
],
"refseq_locus_tag":[
"Gmet_3260"
],
"refseq_name":[
"purA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2786",
"name":"cpkA",
"notes":{
"original_bigg_ids":[
"Gmet_2786"
]
},
"annotation":{
"ncbigi":[
"78195237"
],
"refseq_locus_tag":[
"Gmet_2786"
],
"refseq_name":[
"cpkA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1425",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1425"
]
},
"annotation":{
"ncbigi":[
"78193892"
],
"refseq_locus_tag":[
"Gmet_1425"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0710",
"name":"aguB",
"notes":{
"original_bigg_ids":[
"Gmet_0710"
]
},
"annotation":{
"ncbigi":[
"78193185"
],
"refseq_locus_tag":[
"Gmet_0710"
],
"refseq_name":[
"aguB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1774",
"name":"carB-1",
"notes":{
"original_bigg_ids":[
"Gmet_1774"
]
},
"annotation":{
"ncbigi":[
"78194238"
],
"refseq_locus_tag":[
"Gmet_1774"
],
"refseq_name":[
"carB-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1188",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1188"
]
},
"annotation":{
"ncbigi":[
"78193658"
],
"refseq_locus_tag":[
"Gmet_1188"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0661",
"name":"carB-2",
"notes":{
"original_bigg_ids":[
"Gmet_0661"
]
},
"annotation":{
"ncbigi":[
"78193136"
],
"refseq_locus_tag":[
"Gmet_0661"
],
"refseq_name":[
"carB-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0833",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0833"
]
},
"annotation":{
"ncbigi":[
"78193308"
],
"refseq_locus_tag":[
"Gmet_0833"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1771",
"name":"carA",
"notes":{
"original_bigg_ids":[
"Gmet_1771"
]
},
"annotation":{
"ncbigi":[
"78194235"
],
"refseq_locus_tag":[
"Gmet_1771"
],
"refseq_name":[
"carA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3075",
"name":"queC",
"notes":{
"original_bigg_ids":[
"Gmet_3075"
]
},
"annotation":{
"ncbigi":[
"78195522"
],
"refseq_locus_tag":[
"Gmet_3075"
],
"refseq_name":[
"queC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3177",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3177"
]
},
"annotation":{
"ncbigi":[
"78195623"
],
"refseq_locus_tag":[
"Gmet_3177"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3071",
"name":"dmeF",
"notes":{
"original_bigg_ids":[
"Gmet_3071"
]
},
"annotation":{
"ncbigi":[
"78195518"
],
"refseq_locus_tag":[
"Gmet_3071"
],
"refseq_name":[
"dmeF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2918",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2918"
]
},
"annotation":{
"ncbigi":[
"78195369"
],
"refseq_locus_tag":[
"Gmet_2918"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3509",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3509"
]
},
"annotation":{
"ncbigi":[
"78195947"
],
"refseq_locus_tag":[
"Gmet_3509"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0711",
"name":"aguA",
"notes":{
"original_bigg_ids":[
"Gmet_0711"
]
},
"annotation":{
"ncbigi":[
"78193186"
],
"refseq_locus_tag":[
"Gmet_0711"
],
"refseq_name":[
"aguA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3508",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3508"
]
},
"annotation":{
"ncbigi":[
"78195946"
],
"refseq_locus_tag":[
"Gmet_3508"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1547",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1547"
]
},
"annotation":{
"ncbigi":[
"78194014"
],
"refseq_locus_tag":[
"Gmet_1547"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0363",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0363"
]
},
"annotation":{
"ncbigi":[
"78192839"
],
"refseq_locus_tag":[
"Gmet_0363"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0858",
"name":"fieF",
"notes":{
"original_bigg_ids":[
"Gmet_0858"
]
},
"annotation":{
"ncbigi":[
"78193333"
],
"refseq_locus_tag":[
"Gmet_0858"
],
"refseq_name":[
"fieF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0934",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0934"
]
},
"annotation":{
"ncbigi":[
"78193409"
],
"refseq_locus_tag":[
"Gmet_0934"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1549",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1549"
]
},
"annotation":{
"ncbigi":[
"78194016"
],
"refseq_locus_tag":[
"Gmet_1549"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3507",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3507"
]
},
"annotation":{
"ncbigi":[
"78195945"
],
"refseq_locus_tag":[
"Gmet_3507"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1548",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1548"
]
},
"annotation":{
"ncbigi":[
"78194015"
],
"refseq_locus_tag":[
"Gmet_1548"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1659",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1659"
]
},
"annotation":{
"ncbigi":[
"78194123"
],
"refseq_locus_tag":[
"Gmet_1659"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1658",
"name":"queE",
"notes":{
"original_bigg_ids":[
"Gmet_1658"
]
},
"annotation":{
"ncbigi":[
"78194122"
],
"refseq_locus_tag":[
"Gmet_1658"
],
"refseq_name":[
"queE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2647",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2647"
]
},
"annotation":{
"ncbigi":[
"78195098"
],
"refseq_locus_tag":[
"Gmet_2647"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0773",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0773"
]
},
"annotation":{
"ncbigi":[
"78193248"
],
"refseq_locus_tag":[
"Gmet_0773"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1442",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1442"
]
},
"annotation":{
"ncbigi":[
"78193909"
],
"refseq_locus_tag":[
"Gmet_1442"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1815",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1815"
]
},
"annotation":{
"ncbigi":[
"78194277"
],
"refseq_locus_tag":[
"Gmet_1815"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1917",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1917"
]
},
"annotation":{
"ncbigi":[
"78194379"
],
"refseq_locus_tag":[
"Gmet_1917"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1106",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1106"
]
},
"annotation":{
"ncbigi":[
"78193579"
],
"refseq_locus_tag":[
"Gmet_1106"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2714",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2714"
]
},
"annotation":{
"ncbigi":[
"78195165"
],
"refseq_locus_tag":[
"Gmet_2714"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2425",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2425"
]
},
"annotation":{
"ncbigi":[
"78194883"
],
"refseq_locus_tag":[
"Gmet_2425"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3085",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3085"
]
},
"annotation":{
"ncbigi":[
"78195532"
],
"refseq_locus_tag":[
"Gmet_3085"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0043",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0043"
]
},
"annotation":{
"ncbigi":[
"78192526"
],
"refseq_locus_tag":[
"Gmet_0043"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3275",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3275"
]
},
"annotation":{
"ncbigi":[
"78195721"
],
"refseq_locus_tag":[
"Gmet_3275"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3356",
"name":"hemL",
"notes":{
"original_bigg_ids":[
"Gmet_3356"
]
},
"annotation":{
"ncbigi":[
"78195801"
],
"refseq_locus_tag":[
"Gmet_3356"
],
"refseq_name":[
"hemL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0987",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0987"
]
},
"annotation":{
"ncbigi":[
"403378004"
],
"refseq_locus_tag":[
"Gmet_0987"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0957",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0957"
]
},
"annotation":{
"ncbigi":[
"78193432"
],
"refseq_locus_tag":[
"Gmet_0957"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0008",
"name":"gpsA",
"notes":{
"original_bigg_ids":[
"Gmet_0008"
]
},
"annotation":{
"ncbigi":[
"78192491"
],
"refseq_locus_tag":[
"Gmet_0008"
],
"refseq_name":[
"gpsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2982",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2982"
]
},
"annotation":{
"ncbigi":[
"78195430"
],
"refseq_locus_tag":[
"Gmet_2982"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0069",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0069"
]
},
"annotation":{
"ncbigi":[
"78192551"
],
"refseq_locus_tag":[
"Gmet_0069"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2417",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2417"
]
},
"annotation":{
"ncbigi":[
"78194875"
],
"refseq_locus_tag":[
"Gmet_2417"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2999",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2999"
]
},
"annotation":{
"ncbigi":[
"78195447"
],
"refseq_locus_tag":[
"Gmet_2999"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1706",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1706"
]
},
"annotation":{
"ncbigi":[
"78194170"
],
"refseq_locus_tag":[
"Gmet_1706"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1677",
"name":"glpA",
"notes":{
"original_bigg_ids":[
"Gmet_1677"
]
},
"annotation":{
"ncbigi":[
"78194141"
],
"refseq_locus_tag":[
"Gmet_1677"
],
"refseq_name":[
"glpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0018",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0018"
]
},
"annotation":{
"ncbigi":[
"78192501"
],
"refseq_locus_tag":[
"Gmet_0018"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1914",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1914"
]
},
"annotation":{
"ncbigi":[
"78194376"
],
"refseq_locus_tag":[
"Gmet_1914"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2629",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2629"
]
},
"annotation":{
"ncbigi":[
"78195081"
],
"refseq_locus_tag":[
"Gmet_2629"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1259",
"name":"ilvD",
"notes":{
"original_bigg_ids":[
"Gmet_1259"
]
},
"annotation":{
"ncbigi":[
"78193728"
],
"refseq_locus_tag":[
"Gmet_1259"
],
"refseq_name":[
"ilvD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3199",
"name":"proA",
"notes":{
"original_bigg_ids":[
"Gmet_3199"
]
},
"annotation":{
"ncbigi":[
"78195645"
],
"refseq_locus_tag":[
"Gmet_3199"
],
"refseq_name":[
"proA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1560",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1560"
]
},
"annotation":{
"ncbigi":[
"78194027"
],
"refseq_locus_tag":[
"Gmet_1560"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2619",
"name":"zwf",
"notes":{
"original_bigg_ids":[
"Gmet_2619"
]
},
"annotation":{
"ncbigi":[
"78195071"
],
"refseq_locus_tag":[
"Gmet_2619"
],
"refseq_name":[
"zwf"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1919",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1919"
]
},
"annotation":{
"ncbigi":[
"78194381"
],
"refseq_locus_tag":[
"Gmet_1919"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0212",
"name":"dapB",
"notes":{
"original_bigg_ids":[
"Gmet_0212"
]
},
"annotation":{
"ncbigi":[
"78192691"
],
"refseq_locus_tag":[
"Gmet_0212"
],
"refseq_name":[
"dapB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1365",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1365"
]
},
"annotation":{
"ncbigi":[
"78193832"
],
"refseq_locus_tag":[
"Gmet_1365"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0211",
"name":"dapA",
"notes":{
"original_bigg_ids":[
"Gmet_0211"
]
},
"annotation":{
"ncbigi":[
"78192690"
],
"refseq_locus_tag":[
"Gmet_0211"
],
"refseq_name":[
"dapA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1159",
"name":"galU",
"notes":{
"original_bigg_ids":[
"Gmet_1159"
]
},
"annotation":{
"ncbigi":[
"78193630"
],
"refseq_locus_tag":[
"Gmet_1159"
],
"refseq_name":[
"galU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0849",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0849"
]
},
"annotation":{
"ncbigi":[
"78193324"
],
"refseq_locus_tag":[
"Gmet_0849"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2947",
"name":"folA",
"notes":{
"original_bigg_ids":[
"Gmet_2947"
]
},
"annotation":{
"ncbigi":[
"78195398"
],
"refseq_locus_tag":[
"Gmet_2947"
],
"refseq_name":[
"folA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1991",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1991"
]
},
"annotation":{
"ncbigi":[
"78194453"
],
"refseq_locus_tag":[
"Gmet_1991"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2475",
"name":"folC",
"notes":{
"original_bigg_ids":[
"Gmet_2475"
]
},
"annotation":{
"ncbigi":[
"78194933"
],
"refseq_locus_tag":[
"Gmet_2475"
],
"refseq_name":[
"folC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3221",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3221"
]
},
"annotation":{
"ncbigi":[
"78195667"
],
"refseq_locus_tag":[
"Gmet_3221"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0782",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0782"
]
},
"annotation":{
"ncbigi":[
"78193257"
],
"refseq_locus_tag":[
"Gmet_0782"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2817",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2817"
]
},
"annotation":{
"ncbigi":[
"78195268"
],
"refseq_locus_tag":[
"Gmet_2817"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1211",
"name":"gapB",
"notes":{
"original_bigg_ids":[
"Gmet_1211"
]
},
"annotation":{
"ncbigi":[
"78193681"
],
"refseq_locus_tag":[
"Gmet_1211"
],
"refseq_name":[
"gapB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1845",
"name":"purN",
"notes":{
"original_bigg_ids":[
"Gmet_1845"
]
},
"annotation":{
"ncbigi":[
"78194307"
],
"refseq_locus_tag":[
"Gmet_1845"
],
"refseq_name":[
"purN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3193",
"name":"purT",
"notes":{
"original_bigg_ids":[
"Gmet_3193"
]
},
"annotation":{
"ncbigi":[
"78195639"
],
"refseq_locus_tag":[
"Gmet_3193"
],
"refseq_name":[
"purT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3393",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3393"
]
},
"annotation":{
"ncbigi":[
"78195838"
],
"refseq_locus_tag":[
"Gmet_3393"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3392",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3392"
]
},
"annotation":{
"ncbigi":[
"78195837"
],
"refseq_locus_tag":[
"Gmet_3392"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3476",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3476"
]
},
"annotation":{
"ncbigi":[
"403378176"
],
"refseq_locus_tag":[
"Gmet_3476"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3380",
"name":"mqnD",
"notes":{
"original_bigg_ids":[
"Gmet_3380"
]
},
"annotation":{
"ncbigi":[
"78195825"
],
"refseq_locus_tag":[
"Gmet_3380"
],
"refseq_name":[
"mqnD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2559",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2559"
]
},
"annotation":{
"ncbigi":[
"78195011"
],
"refseq_locus_tag":[
"Gmet_2559"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0497",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0497"
]
},
"annotation":{
"ncbigi":[
"78192973"
],
"refseq_locus_tag":[
"Gmet_0497"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3152",
"name":"gcvP2",
"notes":{
"original_bigg_ids":[
"Gmet_3152"
]
},
"annotation":{
"ncbigi":[
"78195598"
],
"refseq_locus_tag":[
"Gmet_3152"
],
"refseq_name":[
"gcvP2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0700",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0700"
]
},
"annotation":{
"ncbigi":[
"78193175"
],
"refseq_locus_tag":[
"Gmet_0700"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3153",
"name":"gcvP1",
"notes":{
"original_bigg_ids":[
"Gmet_3153"
]
},
"annotation":{
"ncbigi":[
"78195599"
],
"refseq_locus_tag":[
"Gmet_3153"
],
"refseq_name":[
"gcvP1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3154",
"name":"gcvH",
"notes":{
"original_bigg_ids":[
"Gmet_3154"
]
},
"annotation":{
"ncbigi":[
"78195600"
],
"refseq_locus_tag":[
"Gmet_3154"
],
"refseq_name":[
"gcvH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2849",
"name":"ispE",
"notes":{
"original_bigg_ids":[
"Gmet_2849"
]
},
"annotation":{
"ncbigi":[
"78195300"
],
"refseq_locus_tag":[
"Gmet_2849"
],
"refseq_name":[
"ispE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3155",
"name":"gcvT",
"notes":{
"original_bigg_ids":[
"Gmet_3155"
]
},
"annotation":{
"ncbigi":[
"78195601"
],
"refseq_locus_tag":[
"Gmet_3155"
],
"refseq_name":[
"gcvT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1841",
"name":"pyrD",
"notes":{
"original_bigg_ids":[
"Gmet_1841"
]
},
"annotation":{
"ncbigi":[
"78194303"
],
"refseq_locus_tag":[
"Gmet_1841"
],
"refseq_name":[
"pyrD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1842",
"name":"pyrK",
"notes":{
"original_bigg_ids":[
"Gmet_1842"
]
},
"annotation":{
"ncbigi":[
"78194304"
],
"refseq_locus_tag":[
"Gmet_1842"
],
"refseq_name":[
"pyrK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2187",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2187"
]
},
"annotation":{
"ncbigi":[
"78194648"
],
"refseq_locus_tag":[
"Gmet_2187"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1770",
"name":"pyrC",
"notes":{
"original_bigg_ids":[
"Gmet_1770"
]
},
"annotation":{
"ncbigi":[
"78194234"
],
"refseq_locus_tag":[
"Gmet_1770"
],
"refseq_name":[
"pyrC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1889",
"name":"folP",
"notes":{
"original_bigg_ids":[
"Gmet_1889"
]
},
"annotation":{
"ncbigi":[
"78194351"
],
"refseq_locus_tag":[
"Gmet_1889"
],
"refseq_name":[
"folP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1312",
"name":"fcl",
"notes":{
"original_bigg_ids":[
"Gmet_1312"
]
},
"annotation":{
"ncbigi":[
"78193781"
],
"refseq_locus_tag":[
"Gmet_1312"
],
"refseq_name":[
"fcl"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2150",
"name":"bamR",
"notes":{
"original_bigg_ids":[
"Gmet_2150"
]
},
"annotation":{
"ncbigi":[
"78194612"
],
"refseq_locus_tag":[
"Gmet_2150"
],
"refseq_name":[
"bamR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2325",
"name":"relA",
"notes":{
"original_bigg_ids":[
"Gmet_2325"
]
},
"annotation":{
"ncbigi":[
"78194783"
],
"refseq_locus_tag":[
"Gmet_2325"
],
"refseq_name":[
"relA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0981",
"name":"aroQ",
"notes":{
"original_bigg_ids":[
"Gmet_0981"
]
},
"annotation":{
"ncbigi":[
"78193456"
],
"refseq_locus_tag":[
"Gmet_0981"
],
"refseq_name":[
"aroQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1955",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1955"
]
},
"annotation":{
"ncbigi":[
"78194417"
],
"refseq_locus_tag":[
"Gmet_1955"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0978",
"name":"aroB",
"notes":{
"original_bigg_ids":[
"Gmet_0978"
]
},
"annotation":{
"ncbigi":[
"78193453"
],
"refseq_locus_tag":[
"Gmet_0978"
],
"refseq_name":[
"aroB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0862",
"name":"pheA",
"notes":{
"original_bigg_ids":[
"Gmet_0862"
]
},
"annotation":{
"ncbigi":[
"403377993"
],
"refseq_locus_tag":[
"Gmet_0862"
],
"refseq_name":[
"pheA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3391",
"name":"mqnC-2",
"notes":{
"original_bigg_ids":[
"Gmet_3391"
]
},
"annotation":{
"ncbigi":[
"78195836"
],
"refseq_locus_tag":[
"Gmet_3391"
],
"refseq_name":[
"mqnC-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3390",
"name":"mqnC-1",
"notes":{
"original_bigg_ids":[
"Gmet_3390"
]
},
"annotation":{
"ncbigi":[
"78195835"
],
"refseq_locus_tag":[
"Gmet_3390"
],
"refseq_name":[
"mqnC-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2399",
"name":"mazG",
"notes":{
"original_bigg_ids":[
"Gmet_2399"
]
},
"annotation":{
"ncbigi":[
"78194857"
],
"refseq_locus_tag":[
"Gmet_2399"
],
"refseq_name":[
"mazG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0976",
"name":"aroC",
"notes":{
"original_bigg_ids":[
"Gmet_0976"
]
},
"annotation":{
"ncbigi":[
"78193451"
],
"refseq_locus_tag":[
"Gmet_0976"
],
"refseq_name":[
"aroC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1268",
"name":"leuC",
"notes":{
"original_bigg_ids":[
"Gmet_1268"
]
},
"annotation":{
"ncbigi":[
"78193737"
],
"refseq_locus_tag":[
"Gmet_1268"
],
"refseq_name":[
"leuC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0104",
"name":"glmS-1",
"notes":{
"original_bigg_ids":[
"Gmet_0104"
]
},
"annotation":{
"ncbigi":[
"78192586"
],
"refseq_locus_tag":[
"Gmet_0104"
],
"refseq_name":[
"glmS-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1730",
"name":"ato-2",
"notes":{
"original_bigg_ids":[
"Gmet_1730"
]
},
"annotation":{
"ncbigi":[
"78194194"
],
"refseq_locus_tag":[
"Gmet_1730"
],
"refseq_name":[
"ato-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1269",
"name":"leuD",
"notes":{
"original_bigg_ids":[
"Gmet_1269"
]
},
"annotation":{
"ncbigi":[
"78193738"
],
"refseq_locus_tag":[
"Gmet_1269"
],
"refseq_name":[
"leuD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1879",
"name":"cimA",
"notes":{
"original_bigg_ids":[
"Gmet_1879"
]
},
"annotation":{
"ncbigi":[
"78194341"
],
"refseq_locus_tag":[
"Gmet_1879"
],
"refseq_name":[
"cimA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3044",
"name":"ato-1",
"notes":{
"original_bigg_ids":[
"Gmet_3044"
]
},
"annotation":{
"ncbigi":[
"78195492"
],
"refseq_locus_tag":[
"Gmet_3044"
],
"refseq_name":[
"ato-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1487",
"name":"glmS-2",
"notes":{
"original_bigg_ids":[
"Gmet_1487"
]
},
"annotation":{
"ncbigi":[
"78193954"
],
"refseq_locus_tag":[
"Gmet_1487"
],
"refseq_name":[
"glmS-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3011",
"name":"ghr",
"notes":{
"original_bigg_ids":[
"Gmet_3011"
]
},
"annotation":{
"ncbigi":[
"78195459"
],
"refseq_locus_tag":[
"Gmet_3011"
],
"refseq_name":[
"ghr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1935",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1935"
]
},
"annotation":{
"ncbigi":[
"78194397"
],
"refseq_locus_tag":[
"Gmet_1935"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3078",
"name":"cls-1",
"notes":{
"original_bigg_ids":[
"Gmet_3078"
]
},
"annotation":{
"ncbigi":[
"78195525"
],
"refseq_locus_tag":[
"Gmet_3078"
],
"refseq_name":[
"cls-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1605",
"name":"glyA",
"notes":{
"original_bigg_ids":[
"Gmet_1605"
]
},
"annotation":{
"ncbigi":[
"78194070"
],
"refseq_locus_tag":[
"Gmet_1605"
],
"refseq_name":[
"glyA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0078",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0078"
]
},
"annotation":{
"ncbigi":[
"78192560"
],
"refseq_locus_tag":[
"Gmet_0078"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2330",
"name":"uge",
"notes":{
"original_bigg_ids":[
"Gmet_2330"
]
},
"annotation":{
"ncbigi":[
"78194788"
],
"refseq_locus_tag":[
"Gmet_2330"
],
"refseq_name":[
"uge"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3159",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3159"
]
},
"annotation":{
"ncbigi":[
"78195605"
],
"refseq_locus_tag":[
"Gmet_3159"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2455",
"name":"ispB",
"notes":{
"original_bigg_ids":[
"Gmet_2455"
]
},
"annotation":{
"ncbigi":[
"78194913"
],
"refseq_locus_tag":[
"Gmet_2455"
],
"refseq_name":[
"ispB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0065",
"name":"cls-2",
"notes":{
"original_bigg_ids":[
"Gmet_0065"
]
},
"annotation":{
"ncbigi":[
"78192547"
],
"refseq_locus_tag":[
"Gmet_0065"
],
"refseq_name":[
"cls-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0866",
"name":"ispH",
"notes":{
"original_bigg_ids":[
"Gmet_0866"
]
},
"annotation":{
"ncbigi":[
"78193341"
],
"refseq_locus_tag":[
"Gmet_0866"
],
"refseq_name":[
"ispH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3470",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3470"
]
},
"annotation":{
"ncbigi":[
"78195912"
],
"refseq_locus_tag":[
"Gmet_3470"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3026",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3026"
]
},
"annotation":{
"ncbigi":[
"78195474"
],
"refseq_locus_tag":[
"Gmet_3026"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0940",
"name":"glgP",
"notes":{
"original_bigg_ids":[
"Gmet_0940"
]
},
"annotation":{
"ncbigi":[
"78193415"
],
"refseq_locus_tag":[
"Gmet_0940"
],
"refseq_name":[
"glgP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2767",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2767"
]
},
"annotation":{
"ncbigi":[
"78195218"
],
"refseq_locus_tag":[
"Gmet_2767"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1622",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1622"
]
},
"annotation":{
"ncbigi":[
"78194086"
],
"refseq_locus_tag":[
"Gmet_1622"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0707",
"name":"glgA-1",
"notes":{
"original_bigg_ids":[
"Gmet_0707"
]
},
"annotation":{
"ncbigi":[
"78193182"
],
"refseq_locus_tag":[
"Gmet_0707"
],
"refseq_name":[
"glgA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2823",
"name":"hpnH",
"notes":{
"original_bigg_ids":[
"Gmet_2823"
]
},
"annotation":{
"ncbigi":[
"78195274"
],
"refseq_locus_tag":[
"Gmet_2823"
],
"refseq_name":[
"hpnH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0239",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0239"
]
},
"annotation":{
"ncbigi":[
"78192717"
],
"refseq_locus_tag":[
"Gmet_0239"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3175",
"name":"glgA-2",
"notes":{
"original_bigg_ids":[
"Gmet_3175"
]
},
"annotation":{
"ncbigi":[
"78195621"
],
"refseq_locus_tag":[
"Gmet_3175"
],
"refseq_name":[
"glgA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1902",
"name":"cooS",
"notes":{
"original_bigg_ids":[
"Gmet_1902"
]
},
"annotation":{
"ncbigi":[
"78194364"
],
"refseq_locus_tag":[
"Gmet_1902"
],
"refseq_name":[
"cooS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2643",
"name":"panE",
"notes":{
"original_bigg_ids":[
"Gmet_2643"
]
},
"annotation":{
"ncbigi":[
"78195095"
],
"refseq_locus_tag":[
"Gmet_2643"
],
"refseq_name":[
"panE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0474",
"name":"cbiQ",
"notes":{
"original_bigg_ids":[
"Gmet_0474"
]
},
"annotation":{
"ncbigi":[
"78192950"
],
"refseq_locus_tag":[
"Gmet_0474"
],
"refseq_name":[
"cbiQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2344",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2344"
]
},
"annotation":{
"ncbigi":[
"78194802"
],
"refseq_locus_tag":[
"Gmet_2344"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0473",
"name":"cbiN",
"notes":{
"original_bigg_ids":[
"Gmet_0473"
]
},
"annotation":{
"ncbigi":[
"78192949"
],
"refseq_locus_tag":[
"Gmet_0473"
],
"refseq_name":[
"cbiN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2768",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2768"
]
},
"annotation":{
"ncbigi":[
"78195219"
],
"refseq_locus_tag":[
"Gmet_2768"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2318",
"name":"tmk-1",
"notes":{
"original_bigg_ids":[
"Gmet_2318"
]
},
"annotation":{
"ncbigi":[
"78194776"
],
"refseq_locus_tag":[
"Gmet_2318"
],
"refseq_name":[
"tmk-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0475",
"name":"cbiO",
"notes":{
"original_bigg_ids":[
"Gmet_0475"
]
},
"annotation":{
"ncbigi":[
"78192951"
],
"refseq_locus_tag":[
"Gmet_0475"
],
"refseq_name":[
"cbiO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0472",
"name":"cbiM",
"notes":{
"original_bigg_ids":[
"Gmet_0472"
]
},
"annotation":{
"ncbigi":[
"78192948"
],
"refseq_locus_tag":[
"Gmet_0472"
],
"refseq_name":[
"cbiM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1352",
"name":"glnA",
"notes":{
"original_bigg_ids":[
"Gmet_1352"
]
},
"annotation":{
"ncbigi":[
"78193819"
],
"refseq_locus_tag":[
"Gmet_1352"
],
"refseq_name":[
"glnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0482",
"name":"cbiL",
"notes":{
"original_bigg_ids":[
"Gmet_0482"
]
},
"annotation":{
"ncbigi":[
"78192958"
],
"refseq_locus_tag":[
"Gmet_0482"
],
"refseq_name":[
"cbiL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3250",
"name":"tmk-2",
"notes":{
"original_bigg_ids":[
"Gmet_3250"
]
},
"annotation":{
"ncbigi":[
"78195696"
],
"refseq_locus_tag":[
"Gmet_3250"
],
"refseq_name":[
"tmk-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0483",
"name":"cbiF",
"notes":{
"original_bigg_ids":[
"Gmet_0483"
]
},
"annotation":{
"ncbigi":[
"78192959"
],
"refseq_locus_tag":[
"Gmet_0483"
],
"refseq_name":[
"cbiF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0484",
"name":"cbiG",
"notes":{
"original_bigg_ids":[
"Gmet_0484"
]
},
"annotation":{
"ncbigi":[
"78192960"
],
"refseq_locus_tag":[
"Gmet_0484"
],
"refseq_name":[
"cbiG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1593",
"name":"dut",
"notes":{
"original_bigg_ids":[
"Gmet_1593"
]
},
"annotation":{
"ncbigi":[
"78194058"
],
"refseq_locus_tag":[
"Gmet_1593"
],
"refseq_name":[
"dut"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0478",
"name":"cbiD",
"notes":{
"original_bigg_ids":[
"Gmet_0478"
]
},
"annotation":{
"ncbigi":[
"78192954"
],
"refseq_locus_tag":[
"Gmet_0478"
],
"refseq_name":[
"cbiD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1256",
"name":"dxr",
"notes":{
"original_bigg_ids":[
"Gmet_1256"
]
},
"annotation":{
"ncbigi":[
"78193725"
],
"refseq_locus_tag":[
"Gmet_1256"
],
"refseq_name":[
"dxr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0073",
"name":"gatB",
"notes":{
"original_bigg_ids":[
"Gmet_0073"
]
},
"annotation":{
"ncbigi":[
"78192555"
],
"refseq_locus_tag":[
"Gmet_0073"
],
"refseq_name":[
"gatB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0481",
"name":"cbiET",
"notes":{
"original_bigg_ids":[
"Gmet_0481"
]
},
"annotation":{
"ncbigi":[
"78192957"
],
"refseq_locus_tag":[
"Gmet_0481"
],
"refseq_name":[
"cbiET"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0058",
"name":"glnS",
"notes":{
"original_bigg_ids":[
"Gmet_0058"
]
},
"annotation":{
"ncbigi":[
"78192540"
],
"refseq_locus_tag":[
"Gmet_0058"
],
"refseq_name":[
"glnS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1934",
"name":"dxs-2",
"notes":{
"original_bigg_ids":[
"Gmet_1934"
]
},
"annotation":{
"ncbigi":[
"78194396"
],
"refseq_locus_tag":[
"Gmet_1934"
],
"refseq_name":[
"dxs-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2822",
"name":"dxs-1",
"notes":{
"original_bigg_ids":[
"Gmet_2822"
]
},
"annotation":{
"ncbigi":[
"78195273"
],
"refseq_locus_tag":[
"Gmet_2822"
],
"refseq_name":[
"dxs-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0076",
"name":"gatC",
"notes":{
"original_bigg_ids":[
"Gmet_0076"
]
},
"annotation":{
"ncbigi":[
"78192558"
],
"refseq_locus_tag":[
"Gmet_0076"
],
"refseq_name":[
"gatC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0075",
"name":"gatA",
"notes":{
"original_bigg_ids":[
"Gmet_0075"
]
},
"annotation":{
"ncbigi":[
"78192557"
],
"refseq_locus_tag":[
"Gmet_0075"
],
"refseq_name":[
"gatA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3198",
"name":"proB",
"notes":{
"original_bigg_ids":[
"Gmet_3198"
]
},
"annotation":{
"ncbigi":[
"78195644"
],
"refseq_locus_tag":[
"Gmet_3198"
],
"refseq_name":[
"proB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0477",
"name":"cbiC",
"notes":{
"original_bigg_ids":[
"Gmet_0477"
]
},
"annotation":{
"ncbigi":[
"78192953"
],
"refseq_locus_tag":[
"Gmet_0477"
],
"refseq_name":[
"cbiC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1186",
"name":"gdhA",
"notes":{
"original_bigg_ids":[
"Gmet_1186"
]
},
"annotation":{
"ncbigi":[
"78193656"
],
"refseq_locus_tag":[
"Gmet_1186"
],
"refseq_name":[
"gdhA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1939",
"name":"purF",
"notes":{
"original_bigg_ids":[
"Gmet_1939"
]
},
"annotation":{
"ncbigi":[
"78194401"
],
"refseq_locus_tag":[
"Gmet_1939"
],
"refseq_name":[
"purF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1946",
"name":"gapA",
"notes":{
"original_bigg_ids":[
"Gmet_1946"
]
},
"annotation":{
"ncbigi":[
"78194408"
],
"refseq_locus_tag":[
"Gmet_1946"
],
"refseq_name":[
"gapA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2558",
"name":"fabI",
"notes":{
"original_bigg_ids":[
"Gmet_2558"
]
},
"annotation":{
"ncbigi":[
"78195010"
],
"refseq_locus_tag":[
"Gmet_2558"
],
"refseq_name":[
"fabI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0301",
"name":"moaA-1",
"notes":{
"original_bigg_ids":[
"Gmet_0301"
]
},
"annotation":{
"ncbigi":[
"78192779"
],
"refseq_locus_tag":[
"Gmet_0301"
],
"refseq_name":[
"moaA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2095",
"name":"moaA-3",
"notes":{
"original_bigg_ids":[
"Gmet_2095"
]
},
"annotation":{
"ncbigi":[
"78194557"
],
"refseq_locus_tag":[
"Gmet_2095"
],
"refseq_name":[
"moaA-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0091",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0091"
]
},
"annotation":{
"ncbigi":[
"78192573"
],
"refseq_locus_tag":[
"Gmet_0091"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0547",
"name":"murI",
"notes":{
"original_bigg_ids":[
"Gmet_0547"
]
},
"annotation":{
"ncbigi":[
"403377965"
],
"refseq_locus_tag":[
"Gmet_0547"
],
"refseq_name":[
"murI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0337",
"name":"moaA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0337"
]
},
"annotation":{
"ncbigi":[
"78192813"
],
"refseq_locus_tag":[
"Gmet_0337"
],
"refseq_name":[
"moaA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1037",
"name":"moaC",
"notes":{
"original_bigg_ids":[
"Gmet_1037"
]
},
"annotation":{
"ncbigi":[
"78193510"
],
"refseq_locus_tag":[
"Gmet_1037"
],
"refseq_name":[
"moaC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1754",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1754"
]
},
"annotation":{
"ncbigi":[
"78194218"
],
"refseq_locus_tag":[
"Gmet_1754"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0557",
"name":"omcP",
"notes":{
"original_bigg_ids":[
"Gmet_0557"
]
},
"annotation":{
"ncbigi":[
"78193033"
],
"refseq_locus_tag":[
"Gmet_0557"
],
"refseq_name":[
"omcP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3535",
"name":"hemN",
"notes":{
"original_bigg_ids":[
"Gmet_3535"
]
},
"annotation":{
"ncbigi":[
"78195973"
],
"refseq_locus_tag":[
"Gmet_3535"
],
"refseq_name":[
"hemN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0558",
"name":"omcO",
"notes":{
"original_bigg_ids":[
"Gmet_0558"
]
},
"annotation":{
"ncbigi":[
"78193034"
],
"refseq_locus_tag":[
"Gmet_0558"
],
"refseq_name":[
"omcO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1756",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1756"
]
},
"annotation":{
"ncbigi":[
"78194220"
],
"refseq_locus_tag":[
"Gmet_1756"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2127",
"name":"pcmK",
"notes":{
"original_bigg_ids":[
"Gmet_2127"
]
},
"annotation":{
"ncbigi":[
"78194589"
],
"refseq_locus_tag":[
"Gmet_2127"
],
"refseq_name":[
"pcmK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1753",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1753"
]
},
"annotation":{
"ncbigi":[
"78194217"
],
"refseq_locus_tag":[
"Gmet_1753"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0581",
"name":"omcN",
"notes":{
"original_bigg_ids":[
"Gmet_0581"
]
},
"annotation":{
"ncbigi":[
"403377969"
],
"refseq_locus_tag":[
"Gmet_0581"
],
"refseq_name":[
"omcN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1905",
"name":"cysU",
"notes":{
"original_bigg_ids":[
"Gmet_1905"
]
},
"annotation":{
"ncbigi":[
"78194367"
],
"refseq_locus_tag":[
"Gmet_1905"
],
"refseq_name":[
"cysU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1755",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1755"
]
},
"annotation":{
"ncbigi":[
"78194219"
],
"refseq_locus_tag":[
"Gmet_1755"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1752",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1752"
]
},
"annotation":{
"ncbigi":[
"78194216"
],
"refseq_locus_tag":[
"Gmet_1752"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1903",
"name":"cysA",
"notes":{
"original_bigg_ids":[
"Gmet_1903"
]
},
"annotation":{
"ncbigi":[
"78194365"
],
"refseq_locus_tag":[
"Gmet_1903"
],
"refseq_name":[
"cysA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0147",
"name":"gltS",
"notes":{
"original_bigg_ids":[
"Gmet_0147"
]
},
"annotation":{
"ncbigi":[
"78192629"
],
"refseq_locus_tag":[
"Gmet_0147"
],
"refseq_name":[
"gltS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1906",
"name":"cysP",
"notes":{
"original_bigg_ids":[
"Gmet_1906"
]
},
"annotation":{
"ncbigi":[
"78194368"
],
"refseq_locus_tag":[
"Gmet_1906"
],
"refseq_name":[
"cysP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2075",
"name":"bamM",
"notes":{
"original_bigg_ids":[
"Gmet_2075"
]
},
"annotation":{
"ncbigi":[
"78194537"
],
"refseq_locus_tag":[
"Gmet_2075"
],
"refseq_name":[
"bamM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0930",
"name":"omcZ",
"notes":{
"original_bigg_ids":[
"Gmet_0930"
]
},
"annotation":{
"ncbigi":[
"78193405"
],
"refseq_locus_tag":[
"Gmet_0930"
],
"refseq_name":[
"omcZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2549",
"name":"metK-2",
"notes":{
"original_bigg_ids":[
"Gmet_2549"
]
},
"annotation":{
"ncbigi":[
"78195001"
],
"refseq_locus_tag":[
"Gmet_2549"
],
"refseq_name":[
"metK-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2372",
"name":"eno",
"notes":{
"original_bigg_ids":[
"Gmet_2372"
]
},
"annotation":{
"ncbigi":[
"78194830"
],
"refseq_locus_tag":[
"Gmet_2372"
],
"refseq_name":[
"eno"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2389",
"name":"acpH",
"notes":{
"original_bigg_ids":[
"Gmet_2389"
]
},
"annotation":{
"ncbigi":[
"403378102"
],
"refseq_locus_tag":[
"Gmet_2389"
],
"refseq_name":[
"acpH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3233",
"name":"hemA",
"notes":{
"original_bigg_ids":[
"Gmet_3233"
]
},
"annotation":{
"ncbigi":[
"78195679"
],
"refseq_locus_tag":[
"Gmet_3233"
],
"refseq_name":[
"hemA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1736",
"name":"gltX",
"notes":{
"original_bigg_ids":[
"Gmet_1736"
]
},
"annotation":{
"ncbigi":[
"78194200"
],
"refseq_locus_tag":[
"Gmet_1736"
],
"refseq_name":[
"gltX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0549",
"name":"metH",
"notes":{
"original_bigg_ids":[
"Gmet_0549"
]
},
"annotation":{
"ncbigi":[
"78193025"
],
"refseq_locus_tag":[
"Gmet_0549"
],
"refseq_name":[
"metH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0222",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0222"
]
},
"annotation":{
"ncbigi":[
"78192701"
],
"refseq_locus_tag":[
"Gmet_0222"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3245",
"name":"larD",
"notes":{
"original_bigg_ids":[
"Gmet_3245"
]
},
"annotation":{
"ncbigi":[
"78195691"
],
"refseq_locus_tag":[
"Gmet_3245"
],
"refseq_name":[
"larD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3246",
"name":"larF",
"notes":{
"original_bigg_ids":[
"Gmet_3246"
]
},
"annotation":{
"ncbigi":[
"78195692"
],
"refseq_locus_tag":[
"Gmet_3246"
],
"refseq_name":[
"larF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0769",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0769"
]
},
"annotation":{
"ncbigi":[
"78193244"
],
"refseq_locus_tag":[
"Gmet_0769"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0268",
"name":"msrA",
"notes":{
"original_bigg_ids":[
"Gmet_0268"
]
},
"annotation":{
"ncbigi":[
"78192746"
],
"refseq_locus_tag":[
"Gmet_0268"
],
"refseq_name":[
"msrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0256",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0256"
]
},
"annotation":{
"ncbigi":[
"78192734"
],
"refseq_locus_tag":[
"Gmet_0256"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1676",
"name":"glpK",
"notes":{
"original_bigg_ids":[
"Gmet_1676"
]
},
"annotation":{
"ncbigi":[
"78194140"
],
"refseq_locus_tag":[
"Gmet_1676"
],
"refseq_name":[
"glpK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2321",
"name":"metG",
"notes":{
"original_bigg_ids":[
"Gmet_2321"
]
},
"annotation":{
"ncbigi":[
"78194779"
],
"refseq_locus_tag":[
"Gmet_2321"
],
"refseq_name":[
"metG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1469",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1469"
]
},
"annotation":{
"ncbigi":[
"78193936"
],
"refseq_locus_tag":[
"Gmet_1469"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1614",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1614"
]
},
"annotation":{
"ncbigi":[
"78194078"
],
"refseq_locus_tag":[
"Gmet_1614"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2942",
"name":"glyQ",
"notes":{
"original_bigg_ids":[
"Gmet_2942"
]
},
"annotation":{
"ncbigi":[
"78195393"
],
"refseq_locus_tag":[
"Gmet_2942"
],
"refseq_name":[
"glyQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3291",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3291"
]
},
"annotation":{
"ncbigi":[
"78195737"
],
"refseq_locus_tag":[
"Gmet_3291"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2941",
"name":"glyS",
"notes":{
"original_bigg_ids":[
"Gmet_2941"
]
},
"annotation":{
"ncbigi":[
"78195392"
],
"refseq_locus_tag":[
"Gmet_2941"
],
"refseq_name":[
"glyS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0134",
"name":"corA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0134"
]
},
"annotation":{
"ncbigi":[
"78192616"
],
"refseq_locus_tag":[
"Gmet_0134"
],
"refseq_name":[
"corA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1704",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1704"
]
},
"annotation":{
"ncbigi":[
"78194168"
],
"refseq_locus_tag":[
"Gmet_1704"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2349",
"name":"msbA",
"notes":{
"original_bigg_ids":[
"Gmet_2349"
]
},
"annotation":{
"ncbigi":[
"78194807"
],
"refseq_locus_tag":[
"Gmet_2349"
],
"refseq_name":[
"msbA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2252",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2252"
]
},
"annotation":{
"ncbigi":[
"403378090"
],
"refseq_locus_tag":[
"Gmet_2252"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2692",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2692"
]
},
"annotation":{
"ncbigi":[
"78195143"
],
"refseq_locus_tag":[
"Gmet_2692"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1189",
"name":"corA-1",
"notes":{
"original_bigg_ids":[
"Gmet_1189"
]
},
"annotation":{
"ncbigi":[
"403378019"
],
"refseq_locus_tag":[
"Gmet_1189"
],
"refseq_name":[
"corA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1280",
"name":"lptC",
"notes":{
"original_bigg_ids":[
"Gmet_1280"
]
},
"annotation":{
"ncbigi":[
"78193749"
],
"refseq_locus_tag":[
"Gmet_1280"
],
"refseq_name":[
"lptC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2530",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2530"
]
},
"annotation":{
"ncbigi":[
"78194984"
],
"refseq_locus_tag":[
"Gmet_2530"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1282",
"name":"lptB",
"notes":{
"original_bigg_ids":[
"Gmet_1282"
]
},
"annotation":{
"ncbigi":[
"78193751"
],
"refseq_locus_tag":[
"Gmet_1282"
],
"refseq_name":[
"lptB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2229",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2229"
]
},
"annotation":{
"ncbigi":[
"78194689"
],
"refseq_locus_tag":[
"Gmet_2229"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1350",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1350"
]
},
"annotation":{
"ncbigi":[
"78193817"
],
"refseq_locus_tag":[
"Gmet_1350"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2246",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2246"
]
},
"annotation":{
"ncbigi":[
"78194706"
],
"refseq_locus_tag":[
"Gmet_2246"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2474",
"name":"lptD",
"notes":{
"original_bigg_ids":[
"Gmet_2474"
]
},
"annotation":{
"ncbigi":[
"78194932"
],
"refseq_locus_tag":[
"Gmet_2474"
],
"refseq_name":[
"lptD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1750",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1750"
]
},
"annotation":{
"ncbigi":[
"78194214"
],
"refseq_locus_tag":[
"Gmet_1750"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3012",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3012"
]
},
"annotation":{
"ncbigi":[
"78195460"
],
"refseq_locus_tag":[
"Gmet_3012"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1249",
"name":"lptF",
"notes":{
"original_bigg_ids":[
"Gmet_1249"
]
},
"annotation":{
"ncbigi":[
"403378027"
],
"refseq_locus_tag":[
"Gmet_1249"
],
"refseq_name":[
"lptF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2020",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2020"
]
},
"annotation":{
"ncbigi":[
"78194482"
],
"refseq_locus_tag":[
"Gmet_2020"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0348",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0348"
]
},
"annotation":{
"ncbigi":[
"403377951"
],
"refseq_locus_tag":[
"Gmet_0348"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1854",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1854"
]
},
"annotation":{
"ncbigi":[
"78194316"
],
"refseq_locus_tag":[
"Gmet_1854"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2263",
"name":"etfB-6",
"notes":{
"original_bigg_ids":[
"Gmet_2263"
]
},
"annotation":{
"ncbigi":[
"78194722"
],
"refseq_locus_tag":[
"Gmet_2263"
],
"refseq_name":[
"etfB-6"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2299",
"name":"lptE",
"notes":{
"original_bigg_ids":[
"Gmet_2299"
]
},
"annotation":{
"ncbigi":[
"78194757"
],
"refseq_locus_tag":[
"Gmet_2299"
],
"refseq_name":[
"lptE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1281",
"name":"lptA",
"notes":{
"original_bigg_ids":[
"Gmet_1281"
]
},
"annotation":{
"ncbigi":[
"78193750"
],
"refseq_locus_tag":[
"Gmet_1281"
],
"refseq_name":[
"lptA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2529",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2529"
]
},
"annotation":{
"ncbigi":[
"78194983"
],
"refseq_locus_tag":[
"Gmet_2529"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1248",
"name":"lptG",
"notes":{
"original_bigg_ids":[
"Gmet_1248"
]
},
"annotation":{
"ncbigi":[
"78193717"
],
"refseq_locus_tag":[
"Gmet_1248"
],
"refseq_name":[
"lptG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1681",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1681"
]
},
"annotation":{
"ncbigi":[
"78194145"
],
"refseq_locus_tag":[
"Gmet_1681"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1311",
"name":"gmd-1",
"notes":{
"original_bigg_ids":[
"Gmet_1311"
]
},
"annotation":{
"ncbigi":[
"78193780"
],
"refseq_locus_tag":[
"Gmet_1311"
],
"refseq_name":[
"gmd-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2258",
"name":"etfB-3",
"notes":{
"original_bigg_ids":[
"Gmet_2258"
]
},
"annotation":{
"ncbigi":[
"78194717"
],
"refseq_locus_tag":[
"Gmet_2258"
],
"refseq_name":[
"etfB-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2153",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2153"
]
},
"annotation":{
"ncbigi":[
"78194615"
],
"refseq_locus_tag":[
"Gmet_2153"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1238",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1238"
]
},
"annotation":{
"ncbigi":[
"403378025"
],
"refseq_locus_tag":[
"Gmet_1238"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1488",
"name":"gmd-2",
"notes":{
"original_bigg_ids":[
"Gmet_1488"
]
},
"annotation":{
"ncbigi":[
"78193955"
],
"refseq_locus_tag":[
"Gmet_1488"
],
"refseq_name":[
"gmd-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1953",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1953"
]
},
"annotation":{
"ncbigi":[
"78194415"
],
"refseq_locus_tag":[
"Gmet_1953"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0684",
"name":"etfA-1",
"notes":{
"original_bigg_ids":[
"Gmet_0684"
]
},
"annotation":{
"ncbigi":[
"78193159"
],
"refseq_locus_tag":[
"Gmet_0684"
],
"refseq_name":[
"etfA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1377",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1377"
]
},
"annotation":{
"ncbigi":[
"78193844"
],
"refseq_locus_tag":[
"Gmet_1377"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2267",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2267"
]
},
"annotation":{
"ncbigi":[
"78194726"
],
"refseq_locus_tag":[
"Gmet_2267"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2257",
"name":"etfA-3",
"notes":{
"original_bigg_ids":[
"Gmet_2257"
]
},
"annotation":{
"ncbigi":[
"78194716"
],
"refseq_locus_tag":[
"Gmet_2257"
],
"refseq_name":[
"etfA-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0922",
"name":"hldE",
"notes":{
"original_bigg_ids":[
"Gmet_0922"
]
},
"annotation":{
"ncbigi":[
"78193397"
],
"refseq_locus_tag":[
"Gmet_0922"
],
"refseq_name":[
"hldE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0923",
"name":"gmhB",
"notes":{
"original_bigg_ids":[
"Gmet_0923"
]
},
"annotation":{
"ncbigi":[
"78193398"
],
"refseq_locus_tag":[
"Gmet_0923"
],
"refseq_name":[
"gmhB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3262",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3262"
]
},
"annotation":{
"ncbigi":[
"403378160"
],
"refseq_locus_tag":[
"Gmet_3262"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2265",
"name":"etfA-8",
"notes":{
"original_bigg_ids":[
"Gmet_2265"
]
},
"annotation":{
"ncbigi":[
"78194724"
],
"refseq_locus_tag":[
"Gmet_2265"
],
"refseq_name":[
"etfA-8"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2556",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2556"
]
},
"annotation":{
"ncbigi":[
"78195008"
],
"refseq_locus_tag":[
"Gmet_2556"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1526",
"name":"etfA-5",
"notes":{
"original_bigg_ids":[
"Gmet_1526"
]
},
"annotation":{
"ncbigi":[
"78193993"
],
"refseq_locus_tag":[
"Gmet_1526"
],
"refseq_name":[
"etfA-5"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1527",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1527"
]
},
"annotation":{
"ncbigi":[
"78193994"
],
"refseq_locus_tag":[
"Gmet_1527"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2292",
"name":"guaA",
"notes":{
"original_bigg_ids":[
"Gmet_2292"
]
},
"annotation":{
"ncbigi":[
"78194750"
],
"refseq_locus_tag":[
"Gmet_2292"
],
"refseq_name":[
"guaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2620",
"name":"gnd",
"notes":{
"original_bigg_ids":[
"Gmet_2620"
]
},
"annotation":{
"ncbigi":[
"78195072"
],
"refseq_locus_tag":[
"Gmet_2620"
],
"refseq_name":[
"gnd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2481",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2481"
]
},
"annotation":{
"ncbigi":[
"403378108"
],
"refseq_locus_tag":[
"Gmet_2481"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3074",
"name":"folE",
"notes":{
"original_bigg_ids":[
"Gmet_3074"
]
},
"annotation":{
"ncbigi":[
"78195521"
],
"refseq_locus_tag":[
"Gmet_3074"
],
"refseq_name":[
"folE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1714",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1714"
]
},
"annotation":{
"ncbigi":[
"78194178"
],
"refseq_locus_tag":[
"Gmet_1714"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1525",
"name":"etfB-5",
"notes":{
"original_bigg_ids":[
"Gmet_1525"
]
},
"annotation":{
"ncbigi":[
"78193992"
],
"refseq_locus_tag":[
"Gmet_1525"
],
"refseq_name":[
"etfB-5"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3253",
"name":"mceE",
"notes":{
"original_bigg_ids":[
"Gmet_3253"
]
},
"annotation":{
"ncbigi":[
"78195699"
],
"refseq_locus_tag":[
"Gmet_3253"
],
"refseq_name":[
"mceE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2065",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2065"
]
},
"annotation":{
"ncbigi":[
"78194527"
],
"refseq_locus_tag":[
"Gmet_2065"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2716",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2716"
]
},
"annotation":{
"ncbigi":[
"78195167"
],
"refseq_locus_tag":[
"Gmet_2716"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2715",
"name":"pbuG",
"notes":{
"original_bigg_ids":[
"Gmet_2715"
]
},
"annotation":{
"ncbigi":[
"78195166"
],
"refseq_locus_tag":[
"Gmet_2715"
],
"refseq_name":[
"pbuG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1044",
"name":"moaD",
"notes":{
"original_bigg_ids":[
"Gmet_1044"
]
},
"annotation":{
"ncbigi":[
"78193517"
],
"refseq_locus_tag":[
"Gmet_1044"
],
"refseq_name":[
"moaD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0451",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0451"
]
},
"annotation":{
"ncbigi":[
"78192927"
],
"refseq_locus_tag":[
"Gmet_0451"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0685",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0685"
]
},
"annotation":{
"ncbigi":[
"78193160"
],
"refseq_locus_tag":[
"Gmet_0685"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2152",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2152"
]
},
"annotation":{
"ncbigi":[
"78194614"
],
"refseq_locus_tag":[
"Gmet_2152"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2348",
"name":"kdtA",
"notes":{
"original_bigg_ids":[
"Gmet_2348"
]
},
"annotation":{
"ncbigi":[
"78194806"
],
"refseq_locus_tag":[
"Gmet_2348"
],
"refseq_name":[
"kdtA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2264",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2264"
]
},
"annotation":{
"ncbigi":[
"78194723"
],
"refseq_locus_tag":[
"Gmet_2264"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0514",
"name":"modC",
"notes":{
"original_bigg_ids":[
"Gmet_0514"
]
},
"annotation":{
"ncbigi":[
"78192990"
],
"refseq_locus_tag":[
"Gmet_0514"
],
"refseq_name":[
"modC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2255",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2255"
]
},
"annotation":{
"ncbigi":[
"78194714"
],
"refseq_locus_tag":[
"Gmet_2255"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1713",
"name":"etfB-7",
"notes":{
"original_bigg_ids":[
"Gmet_1713"
]
},
"annotation":{
"ncbigi":[
"78194177"
],
"refseq_locus_tag":[
"Gmet_1713"
],
"refseq_name":[
"etfB-7"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0692",
"name":"nifV",
"notes":{
"original_bigg_ids":[
"Gmet_0692"
]
},
"annotation":{
"ncbigi":[
"78193167"
],
"refseq_locus_tag":[
"Gmet_0692"
],
"refseq_name":[
"nifV"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0512",
"name":"modA",
"notes":{
"original_bigg_ids":[
"Gmet_0512"
]
},
"annotation":{
"ncbigi":[
"78192988"
],
"refseq_locus_tag":[
"Gmet_0512"
],
"refseq_name":[
"modA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1242",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1242"
]
},
"annotation":{
"ncbigi":[
"78193711"
],
"refseq_locus_tag":[
"Gmet_1242"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0683",
"name":"etfB-1",
"notes":{
"original_bigg_ids":[
"Gmet_0683"
]
},
"annotation":{
"ncbigi":[
"78193158"
],
"refseq_locus_tag":[
"Gmet_0683"
],
"refseq_name":[
"etfB-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0513",
"name":"modB",
"notes":{
"original_bigg_ids":[
"Gmet_0513"
]
},
"annotation":{
"ncbigi":[
"78192989"
],
"refseq_locus_tag":[
"Gmet_0513"
],
"refseq_name":[
"modB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1712",
"name":"etfA-7",
"notes":{
"original_bigg_ids":[
"Gmet_1712"
]
},
"annotation":{
"ncbigi":[
"78194176"
],
"refseq_locus_tag":[
"Gmet_1712"
],
"refseq_name":[
"etfA-7"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1642",
"name":"panB",
"notes":{
"original_bigg_ids":[
"Gmet_1642"
]
},
"annotation":{
"ncbigi":[
"78194106"
],
"refseq_locus_tag":[
"Gmet_1642"
],
"refseq_name":[
"panB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2262",
"name":"etfA-6",
"notes":{
"original_bigg_ids":[
"Gmet_2262"
]
},
"annotation":{
"ncbigi":[
"78194721"
],
"refseq_locus_tag":[
"Gmet_2262"
],
"refseq_name":[
"etfA-6"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2067",
"name":"etfB-2",
"notes":{
"original_bigg_ids":[
"Gmet_2067"
]
},
"annotation":{
"ncbigi":[
"78194529"
],
"refseq_locus_tag":[
"Gmet_2067"
],
"refseq_name":[
"etfB-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3517",
"name":"can",
"notes":{
"original_bigg_ids":[
"Gmet_3517"
]
},
"annotation":{
"ncbigi":[
"78195955"
],
"refseq_locus_tag":[
"Gmet_3517"
],
"refseq_name":[
"can"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0774",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0774"
]
},
"annotation":{
"ncbigi":[
"78193249"
],
"refseq_locus_tag":[
"Gmet_0774"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3467",
"name":"treZ",
"notes":{
"original_bigg_ids":[
"Gmet_3467"
]
},
"annotation":{
"ncbigi":[
"78195909"
],
"refseq_locus_tag":[
"Gmet_3467"
],
"refseq_name":[
"treZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2266",
"name":"etfB-8",
"notes":{
"original_bigg_ids":[
"Gmet_2266"
]
},
"annotation":{
"ncbigi":[
"78194725"
],
"refseq_locus_tag":[
"Gmet_2266"
],
"refseq_name":[
"etfB-8"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2066",
"name":"etfA-2",
"notes":{
"original_bigg_ids":[
"Gmet_2066"
]
},
"annotation":{
"ncbigi":[
"78194528"
],
"refseq_locus_tag":[
"Gmet_2066"
],
"refseq_name":[
"etfA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3468",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3468"
]
},
"annotation":{
"ncbigi":[
"78195910"
],
"refseq_locus_tag":[
"Gmet_3468"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2070",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2070"
]
},
"annotation":{
"ncbigi":[
"78194532"
],
"refseq_locus_tag":[
"Gmet_2070"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1036",
"name":"moaB",
"notes":{
"original_bigg_ids":[
"Gmet_1036"
]
},
"annotation":{
"ncbigi":[
"78193509"
],
"refseq_locus_tag":[
"Gmet_1036"
],
"refseq_name":[
"moaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1761",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1761"
]
},
"annotation":{
"ncbigi":[
"78194225"
],
"refseq_locus_tag":[
"Gmet_1761"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3428",
"name":"hdrD",
"notes":{
"original_bigg_ids":[
"Gmet_3428"
]
},
"annotation":{
"ncbigi":[
"78195873"
],
"refseq_locus_tag":[
"Gmet_3428"
],
"refseq_name":[
"hdrD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0406",
"name":"ftsI",
"notes":{
"original_bigg_ids":[
"Gmet_0406"
]
},
"annotation":{
"ncbigi":[
"78192882"
],
"refseq_locus_tag":[
"Gmet_0406"
],
"refseq_name":[
"ftsI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1671",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1671"
]
},
"annotation":{
"ncbigi":[
"403378056"
],
"refseq_locus_tag":[
"Gmet_1671"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3424",
"name":"hdrC",
"notes":{
"original_bigg_ids":[
"Gmet_3424"
]
},
"annotation":{
"ncbigi":[
"403378173"
],
"refseq_locus_tag":[
"Gmet_3424"
],
"refseq_name":[
"hdrC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3425",
"name":"hdrB",
"notes":{
"original_bigg_ids":[
"Gmet_3425"
]
},
"annotation":{
"ncbigi":[
"78195870"
],
"refseq_locus_tag":[
"Gmet_3425"
],
"refseq_name":[
"hdrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0354",
"name":"mrcA",
"notes":{
"original_bigg_ids":[
"Gmet_0354"
]
},
"annotation":{
"ncbigi":[
"78192830"
],
"refseq_locus_tag":[
"Gmet_0354"
],
"refseq_name":[
"mrcA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3426",
"name":"hdrA",
"notes":{
"original_bigg_ids":[
"Gmet_3426"
]
},
"annotation":{
"ncbigi":[
"78195871"
],
"refseq_locus_tag":[
"Gmet_3426"
],
"refseq_name":[
"hdrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3430",
"name":"hdrE",
"notes":{
"original_bigg_ids":[
"Gmet_3430"
]
},
"annotation":{
"ncbigi":[
"78195875"
],
"refseq_locus_tag":[
"Gmet_3430"
],
"refseq_name":[
"hdrE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3427",
"name":"hdrG",
"notes":{
"original_bigg_ids":[
"Gmet_3427"
]
},
"annotation":{
"ncbigi":[
"78195872"
],
"refseq_locus_tag":[
"Gmet_3427"
],
"refseq_name":[
"hdrG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2383",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2383"
]
},
"annotation":{
"ncbigi":[
"78194841"
],
"refseq_locus_tag":[
"Gmet_2383"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3403",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3403"
]
},
"annotation":{
"ncbigi":[
"403378171"
],
"refseq_locus_tag":[
"Gmet_3403"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1921",
"name":"fbp",
"notes":{
"original_bigg_ids":[
"Gmet_1921"
]
},
"annotation":{
"ncbigi":[
"78194383"
],
"refseq_locus_tag":[
"Gmet_1921"
],
"refseq_name":[
"fbp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3431",
"name":"hdrF",
"notes":{
"original_bigg_ids":[
"Gmet_3431"
]
},
"annotation":{
"ncbigi":[
"78195876"
],
"refseq_locus_tag":[
"Gmet_3431"
],
"refseq_name":[
"hdrF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0302",
"name":"mosC-1",
"notes":{
"original_bigg_ids":[
"Gmet_0302"
]
},
"annotation":{
"ncbigi":[
"78192780"
],
"refseq_locus_tag":[
"Gmet_0302"
],
"refseq_name":[
"mosC-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0019",
"name":"hemH",
"notes":{
"original_bigg_ids":[
"Gmet_0019"
]
},
"annotation":{
"ncbigi":[
"78192502"
],
"refseq_locus_tag":[
"Gmet_0019"
],
"refseq_name":[
"hemH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2094",
"name":"mosC-2",
"notes":{
"original_bigg_ids":[
"Gmet_2094"
]
},
"annotation":{
"ncbigi":[
"78194556"
],
"refseq_locus_tag":[
"Gmet_2094"
],
"refseq_name":[
"mosC-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0253",
"name":"ctaB",
"notes":{
"original_bigg_ids":[
"Gmet_0253"
]
},
"annotation":{
"ncbigi":[
"78192731"
],
"refseq_locus_tag":[
"Gmet_0253"
],
"refseq_name":[
"ctaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1043",
"name":"moeB",
"notes":{
"original_bigg_ids":[
"Gmet_1043"
]
},
"annotation":{
"ncbigi":[
"78193516"
],
"refseq_locus_tag":[
"Gmet_1043"
],
"refseq_name":[
"moeB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2684",
"name":"mtaP",
"notes":{
"original_bigg_ids":[
"Gmet_2684"
]
},
"annotation":{
"ncbigi":[
"78195135"
],
"refseq_locus_tag":[
"Gmet_2684"
],
"refseq_name":[
"mtaP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1059",
"name":"fdnG",
"notes":{
"original_bigg_ids":[
"Gmet_1059"
]
},
"annotation":{
"ncbigi":[
"78193532"
],
"refseq_locus_tag":[
"Gmet_1059"
],
"refseq_name":[
"fdnG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0247",
"name":"folD-1",
"notes":{
"original_bigg_ids":[
"Gmet_0247"
]
},
"annotation":{
"ncbigi":[
"78192725"
],
"refseq_locus_tag":[
"Gmet_0247"
],
"refseq_name":[
"folD-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2331",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2331"
]
},
"annotation":{
"ncbigi":[
"403378098"
],
"refseq_locus_tag":[
"Gmet_2331"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1162",
"name":"folD-2",
"notes":{
"original_bigg_ids":[
"Gmet_1162"
]
},
"annotation":{
"ncbigi":[
"78193633"
],
"refseq_locus_tag":[
"Gmet_1162"
],
"refseq_name":[
"folD-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2345",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2345"
]
},
"annotation":{
"ncbigi":[
"78194803"
],
"refseq_locus_tag":[
"Gmet_2345"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1060",
"name":"fdnH",
"notes":{
"original_bigg_ids":[
"Gmet_1060"
]
},
"annotation":{
"ncbigi":[
"78193533"
],
"refseq_locus_tag":[
"Gmet_1060"
],
"refseq_name":[
"fdnH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2341",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2341"
]
},
"annotation":{
"ncbigi":[
"403378099"
],
"refseq_locus_tag":[
"Gmet_2341"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0504",
"name":"metF-2",
"notes":{
"original_bigg_ids":[
"Gmet_0504"
]
},
"annotation":{
"ncbigi":[
"78192980"
],
"refseq_locus_tag":[
"Gmet_0504"
],
"refseq_name":[
"metF-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1639",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1639"
]
},
"annotation":{
"ncbigi":[
"78194103"
],
"refseq_locus_tag":[
"Gmet_1639"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1004",
"name":"fdhE",
"notes":{
"original_bigg_ids":[
"Gmet_1004"
]
},
"annotation":{
"ncbigi":[
"78193479"
],
"refseq_locus_tag":[
"Gmet_1004"
],
"refseq_name":[
"fdhE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1160",
"name":"metF-1",
"notes":{
"original_bigg_ids":[
"Gmet_1160"
]
},
"annotation":{
"ncbigi":[
"403378016"
],
"refseq_locus_tag":[
"Gmet_1160"
],
"refseq_name":[
"metF-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1061",
"name":"fdnI",
"notes":{
"original_bigg_ids":[
"Gmet_1061"
]
},
"annotation":{
"ncbigi":[
"78193534"
],
"refseq_locus_tag":[
"Gmet_1061"
],
"refseq_name":[
"fdnI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3469",
"name":"treS",
"notes":{
"original_bigg_ids":[
"Gmet_3469"
]
},
"annotation":{
"ncbigi":[
"78195911"
],
"refseq_locus_tag":[
"Gmet_3469"
],
"refseq_name":[
"treS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2805",
"name":"mak",
"notes":{
"original_bigg_ids":[
"Gmet_2805"
]
},
"annotation":{
"ncbigi":[
"78195256"
],
"refseq_locus_tag":[
"Gmet_2805"
],
"refseq_name":[
"mak"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0072",
"name":"mtnA",
"notes":{
"original_bigg_ids":[
"Gmet_0072"
]
},
"annotation":{
"ncbigi":[
"78192554"
],
"refseq_locus_tag":[
"Gmet_0072"
],
"refseq_name":[
"mtnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2834",
"name":"hcp",
"notes":{
"original_bigg_ids":[
"Gmet_2834"
]
},
"annotation":{
"ncbigi":[
"78195285"
],
"refseq_locus_tag":[
"Gmet_2834"
],
"refseq_name":[
"hcp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0177",
"name":"lpdA-3",
"notes":{
"original_bigg_ids":[
"Gmet_0177"
]
},
"annotation":{
"ncbigi":[
"78192656"
],
"refseq_locus_tag":[
"Gmet_0177"
],
"refseq_name":[
"lpdA-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2444",
"name":"feoB",
"notes":{
"original_bigg_ids":[
"Gmet_2444"
]
},
"annotation":{
"ncbigi":[
"78194902"
],
"refseq_locus_tag":[
"Gmet_2444"
],
"refseq_name":[
"feoB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3321",
"name":"mvhF",
"notes":{
"original_bigg_ids":[
"Gmet_3321"
]
},
"annotation":{
"ncbigi":[
"78195767"
],
"refseq_locus_tag":[
"Gmet_3321"
],
"refseq_name":[
"mvhF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3320",
"name":"mvhL",
"notes":{
"original_bigg_ids":[
"Gmet_3320"
]
},
"annotation":{
"ncbigi":[
"78195766"
],
"refseq_locus_tag":[
"Gmet_3320"
],
"refseq_name":[
"mvhL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3494",
"name":"scdA",
"notes":{
"original_bigg_ids":[
"Gmet_3494"
]
},
"annotation":{
"ncbigi":[
"78195932"
],
"refseq_locus_tag":[
"Gmet_3494"
],
"refseq_name":[
"scdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0384",
"name":"hisD",
"notes":{
"original_bigg_ids":[
"Gmet_0384"
]
},
"annotation":{
"ncbigi":[
"78192860"
],
"refseq_locus_tag":[
"Gmet_0384"
],
"refseq_name":[
"hisD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1109",
"name":"hoxE",
"notes":{
"original_bigg_ids":[
"Gmet_1109"
]
},
"annotation":{
"ncbigi":[
"78193582"
],
"refseq_locus_tag":[
"Gmet_1109"
],
"refseq_name":[
"hoxE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3323",
"name":"mvhP",
"notes":{
"original_bigg_ids":[
"Gmet_3323"
]
},
"annotation":{
"ncbigi":[
"78195769"
],
"refseq_locus_tag":[
"Gmet_3323"
],
"refseq_name":[
"mvhP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0697",
"name":"hisN",
"notes":{
"original_bigg_ids":[
"Gmet_0697"
]
},
"annotation":{
"ncbigi":[
"78193172"
],
"refseq_locus_tag":[
"Gmet_0697"
],
"refseq_name":[
"hisN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1111",
"name":"hoxU",
"notes":{
"original_bigg_ids":[
"Gmet_1111"
]
},
"annotation":{
"ncbigi":[
"78193584"
],
"refseq_locus_tag":[
"Gmet_1111"
],
"refseq_name":[
"hoxU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1913",
"name":"hisS",
"notes":{
"original_bigg_ids":[
"Gmet_1913"
]
},
"annotation":{
"ncbigi":[
"78194375"
],
"refseq_locus_tag":[
"Gmet_1913"
],
"refseq_name":[
"hisS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3023",
"name":"sfrB",
"notes":{
"original_bigg_ids":[
"Gmet_3023"
]
},
"annotation":{
"ncbigi":[
"78195471"
],
"refseq_locus_tag":[
"Gmet_3023"
],
"refseq_name":[
"sfrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1112",
"name":"hoxS",
"notes":{
"original_bigg_ids":[
"Gmet_1112"
]
},
"annotation":{
"ncbigi":[
"78193585"
],
"refseq_locus_tag":[
"Gmet_1112"
],
"refseq_name":[
"hoxS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3022",
"name":"sfrA",
"notes":{
"original_bigg_ids":[
"Gmet_3022"
]
},
"annotation":{
"ncbigi":[
"78195470"
],
"refseq_locus_tag":[
"Gmet_3022"
],
"refseq_name":[
"sfrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1113",
"name":"hoxL",
"notes":{
"original_bigg_ids":[
"Gmet_1113"
]
},
"annotation":{
"ncbigi":[
"78193586"
],
"refseq_locus_tag":[
"Gmet_1113"
],
"refseq_name":[
"hoxL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3339",
"name":"fmt",
"notes":{
"original_bigg_ids":[
"Gmet_3339"
]
},
"annotation":{
"ncbigi":[
"78195785"
],
"refseq_locus_tag":[
"Gmet_3339"
],
"refseq_name":[
"fmt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3259",
"name":"hisZ",
"notes":{
"original_bigg_ids":[
"Gmet_3259"
]
},
"annotation":{
"ncbigi":[
"78195705"
],
"refseq_locus_tag":[
"Gmet_3259"
],
"refseq_name":[
"hisZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3319",
"name":"mvhS",
"notes":{
"original_bigg_ids":[
"Gmet_3319"
]
},
"annotation":{
"ncbigi":[
"78195765"
],
"refseq_locus_tag":[
"Gmet_3319"
],
"refseq_name":[
"mvhS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1110",
"name":"hoxF",
"notes":{
"original_bigg_ids":[
"Gmet_1110"
]
},
"annotation":{
"ncbigi":[
"78193583"
],
"refseq_locus_tag":[
"Gmet_1110"
],
"refseq_name":[
"hoxF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3301",
"name":"etfA-9",
"notes":{
"original_bigg_ids":[
"Gmet_3301"
]
},
"annotation":{
"ncbigi":[
"78195747"
],
"refseq_locus_tag":[
"Gmet_3301"
],
"refseq_name":[
"etfA-9"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2434",
"name":"kdpB",
"notes":{
"original_bigg_ids":[
"Gmet_2434"
]
},
"annotation":{
"ncbigi":[
"78194892"
],
"refseq_locus_tag":[
"Gmet_2434"
],
"refseq_name":[
"kdpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1388",
"name":"ribF",
"notes":{
"original_bigg_ids":[
"Gmet_1388"
]
},
"annotation":{
"ncbigi":[
"78193855"
],
"refseq_locus_tag":[
"Gmet_1388"
],
"refseq_name":[
"ribF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3300",
"name":"etfB-9",
"notes":{
"original_bigg_ids":[
"Gmet_3300"
]
},
"annotation":{
"ncbigi":[
"78195746"
],
"refseq_locus_tag":[
"Gmet_3300"
],
"refseq_name":[
"etfB-9"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2397",
"name":"frdC",
"notes":{
"original_bigg_ids":[
"Gmet_2397"
]
},
"annotation":{
"ncbigi":[
"78194855"
],
"refseq_locus_tag":[
"Gmet_2397"
],
"refseq_name":[
"frdC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2433",
"name":"kdpA",
"notes":{
"original_bigg_ids":[
"Gmet_2433"
]
},
"annotation":{
"ncbigi":[
"78194891"
],
"refseq_locus_tag":[
"Gmet_2433"
],
"refseq_name":[
"kdpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2435",
"name":"kdpC",
"notes":{
"original_bigg_ids":[
"Gmet_2435"
]
},
"annotation":{
"ncbigi":[
"78194893"
],
"refseq_locus_tag":[
"Gmet_2435"
],
"refseq_name":[
"kdpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0771",
"name":"wrbA",
"notes":{
"original_bigg_ids":[
"Gmet_0771"
]
},
"annotation":{
"ncbigi":[
"78193246"
],
"refseq_locus_tag":[
"Gmet_0771"
],
"refseq_name":[
"wrbA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3234",
"name":"hemC",
"notes":{
"original_bigg_ids":[
"Gmet_3234"
]
},
"annotation":{
"ncbigi":[
"78195680"
],
"refseq_locus_tag":[
"Gmet_3234"
],
"refseq_name":[
"hemC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3293",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3293"
]
},
"annotation":{
"ncbigi":[
"78195739"
],
"refseq_locus_tag":[
"Gmet_3293"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3347",
"name":"nuoI-1",
"notes":{
"original_bigg_ids":[
"Gmet_3347"
]
},
"annotation":{
"ncbigi":[
"78195792"
],
"refseq_locus_tag":[
"Gmet_3347"
],
"refseq_name":[
"nuoI-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2909",
"name":"thiE/thiD",
"notes":{
"original_bigg_ids":[
"Gmet_2909"
]
},
"annotation":{
"ncbigi":[
"78195360"
],
"refseq_locus_tag":[
"Gmet_2909"
],
"refseq_name":[
"thiE/thiD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0309",
"name":"sdhB",
"notes":{
"original_bigg_ids":[
"Gmet_0309"
]
},
"annotation":{
"ncbigi":[
"78192787"
],
"refseq_locus_tag":[
"Gmet_0309"
],
"refseq_name":[
"sdhB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0310",
"name":"sdhE",
"notes":{
"original_bigg_ids":[
"Gmet_0310"
]
},
"annotation":{
"ncbigi":[
"78192788"
],
"refseq_locus_tag":[
"Gmet_0310"
],
"refseq_name":[
"sdhE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1530",
"name":"bbsC",
"notes":{
"original_bigg_ids":[
"Gmet_1530"
]
},
"annotation":{
"ncbigi":[
"78193997"
],
"refseq_locus_tag":[
"Gmet_1530"
],
"refseq_name":[
"bbsC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2396",
"name":"frdA",
"notes":{
"original_bigg_ids":[
"Gmet_2396"
]
},
"annotation":{
"ncbigi":[
"78194854"
],
"refseq_locus_tag":[
"Gmet_2396"
],
"refseq_name":[
"frdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0161",
"name":"nuoH-2",
"notes":{
"original_bigg_ids":[
"Gmet_0161"
]
},
"annotation":{
"ncbigi":[
"78192641"
],
"refseq_locus_tag":[
"Gmet_0161"
],
"refseq_name":[
"nuoH-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0308",
"name":"sdhA",
"notes":{
"original_bigg_ids":[
"Gmet_0308"
]
},
"annotation":{
"ncbigi":[
"78192786"
],
"refseq_locus_tag":[
"Gmet_0308"
],
"refseq_name":[
"sdhA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2395",
"name":"frdB",
"notes":{
"original_bigg_ids":[
"Gmet_2395"
]
},
"annotation":{
"ncbigi":[
"78194853"
],
"refseq_locus_tag":[
"Gmet_2395"
],
"refseq_name":[
"frdB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1531",
"name":"bbsD",
"notes":{
"original_bigg_ids":[
"Gmet_1531"
]
},
"annotation":{
"ncbigi":[
"78193998"
],
"refseq_locus_tag":[
"Gmet_1531"
],
"refseq_name":[
"bbsD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2151",
"name":"bamQ",
"notes":{
"original_bigg_ids":[
"Gmet_2151"
]
},
"annotation":{
"ncbigi":[
"78194613"
],
"refseq_locus_tag":[
"Gmet_2151"
],
"refseq_name":[
"bamQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3512",
"name":"putA",
"notes":{
"original_bigg_ids":[
"Gmet_3512"
]
},
"annotation":{
"ncbigi":[
"78195950"
],
"refseq_locus_tag":[
"Gmet_3512"
],
"refseq_name":[
"putA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0148",
"name":"frx-4",
"notes":{
"original_bigg_ids":[
"Gmet_0148"
]
},
"annotation":{
"ncbigi":[
"78192630"
],
"refseq_locus_tag":[
"Gmet_0148"
],
"refseq_name":[
"frx-4"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3170",
"name":"frx-6",
"notes":{
"original_bigg_ids":[
"Gmet_3170"
]
},
"annotation":{
"ncbigi":[
"78195616"
],
"refseq_locus_tag":[
"Gmet_3170"
],
"refseq_name":[
"frx-6"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0163",
"name":"nuoI-2",
"notes":{
"original_bigg_ids":[
"Gmet_0163"
]
},
"annotation":{
"ncbigi":[
"403377932"
],
"refseq_locus_tag":[
"Gmet_0163"
],
"refseq_name":[
"nuoI-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0495",
"name":"folK",
"notes":{
"original_bigg_ids":[
"Gmet_0495"
]
},
"annotation":{
"ncbigi":[
"403377957"
],
"refseq_locus_tag":[
"Gmet_0495"
],
"refseq_name":[
"folK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0154",
"name":"nuoE-2",
"notes":{
"original_bigg_ids":[
"Gmet_0154"
]
},
"annotation":{
"ncbigi":[
"78192634"
],
"refseq_locus_tag":[
"Gmet_0154"
],
"refseq_name":[
"nuoE-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1629",
"name":"hom",
"notes":{
"original_bigg_ids":[
"Gmet_1629"
]
},
"annotation":{
"ncbigi":[
"78194093"
],
"refseq_locus_tag":[
"Gmet_1629"
],
"refseq_name":[
"hom"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3492",
"name":"frx-5",
"notes":{
"original_bigg_ids":[
"Gmet_3492"
]
},
"annotation":{
"ncbigi":[
"78195930"
],
"refseq_locus_tag":[
"Gmet_3492"
],
"refseq_name":[
"frx-5"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1241",
"name":"frx-1",
"notes":{
"original_bigg_ids":[
"Gmet_1241"
]
},
"annotation":{
"ncbigi":[
"78193710"
],
"refseq_locus_tag":[
"Gmet_1241"
],
"refseq_name":[
"frx-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0172",
"name":"nuoN-2",
"notes":{
"original_bigg_ids":[
"Gmet_0172"
]
},
"annotation":{
"ncbigi":[
"78192652"
],
"refseq_locus_tag":[
"Gmet_0172"
],
"refseq_name":[
"nuoN-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2783",
"name":"metX",
"notes":{
"original_bigg_ids":[
"Gmet_2783"
]
},
"annotation":{
"ncbigi":[
"78195234"
],
"refseq_locus_tag":[
"Gmet_2783"
],
"refseq_name":[
"metX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3354",
"name":"nuoB",
"notes":{
"original_bigg_ids":[
"Gmet_3354"
]
},
"annotation":{
"ncbigi":[
"78195799"
],
"refseq_locus_tag":[
"Gmet_3354"
],
"refseq_name":[
"nuoB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0385",
"name":"hisC",
"notes":{
"original_bigg_ids":[
"Gmet_0385"
]
},
"annotation":{
"ncbigi":[
"78192861"
],
"refseq_locus_tag":[
"Gmet_0385"
],
"refseq_name":[
"hisC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1033",
"name":"frx-2",
"notes":{
"original_bigg_ids":[
"Gmet_1033"
]
},
"annotation":{
"ncbigi":[
"403378010"
],
"refseq_locus_tag":[
"Gmet_1033"
],
"refseq_name":[
"frx-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3345",
"name":"nuoK-1",
"notes":{
"original_bigg_ids":[
"Gmet_3345"
]
},
"annotation":{
"ncbigi":[
"78195790"
],
"refseq_locus_tag":[
"Gmet_3345"
],
"refseq_name":[
"nuoK-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1179",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1179"
]
},
"annotation":{
"ncbigi":[
"78193650"
],
"refseq_locus_tag":[
"Gmet_1179"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0153",
"name":"nuoBCD",
"notes":{
"original_bigg_ids":[
"Gmet_0153"
]
},
"annotation":{
"ncbigi":[
"78192633"
],
"refseq_locus_tag":[
"Gmet_0153"
],
"refseq_name":[
"nuoBCD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3331",
"name":"hyaL",
"notes":{
"original_bigg_ids":[
"Gmet_3331"
]
},
"annotation":{
"ncbigi":[
"78195777"
],
"refseq_locus_tag":[
"Gmet_3331"
],
"refseq_name":[
"hyaL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3355",
"name":"nuoA-1",
"notes":{
"original_bigg_ids":[
"Gmet_3355"
]
},
"annotation":{
"ncbigi":[
"78195800"
],
"refseq_locus_tag":[
"Gmet_3355"
],
"refseq_name":[
"nuoA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3332",
"name":"hyaS",
"notes":{
"original_bigg_ids":[
"Gmet_3332"
]
},
"annotation":{
"ncbigi":[
"78195778"
],
"refseq_locus_tag":[
"Gmet_3332"
],
"refseq_name":[
"hyaS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2570",
"name":"fumB",
"notes":{
"original_bigg_ids":[
"Gmet_2570"
]
},
"annotation":{
"ncbigi":[
"78195022"
],
"refseq_locus_tag":[
"Gmet_2570"
],
"refseq_name":[
"fumB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0167",
"name":"nuoK-2",
"notes":{
"original_bigg_ids":[
"Gmet_0167"
]
},
"annotation":{
"ncbigi":[
"78192647"
],
"refseq_locus_tag":[
"Gmet_0167"
],
"refseq_name":[
"nuoK-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3381",
"name":"mqnB",
"notes":{
"original_bigg_ids":[
"Gmet_3381"
]
},
"annotation":{
"ncbigi":[
"78195826"
],
"refseq_locus_tag":[
"Gmet_3381"
],
"refseq_name":[
"mqnB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0120",
"name":"hypB",
"notes":{
"original_bigg_ids":[
"Gmet_0120"
]
},
"annotation":{
"ncbigi":[
"78192602"
],
"refseq_locus_tag":[
"Gmet_0120"
],
"refseq_name":[
"hypB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0165",
"name":"nuoJ-2",
"notes":{
"original_bigg_ids":[
"Gmet_0165"
]
},
"annotation":{
"ncbigi":[
"78192645"
],
"refseq_locus_tag":[
"Gmet_0165"
],
"refseq_name":[
"nuoJ-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3329",
"name":"hyaP",
"notes":{
"original_bigg_ids":[
"Gmet_3329"
]
},
"annotation":{
"ncbigi":[
"78195775"
],
"refseq_locus_tag":[
"Gmet_3329"
],
"refseq_name":[
"hyaP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0986",
"name":"mqnA",
"notes":{
"original_bigg_ids":[
"Gmet_0986"
]
},
"annotation":{
"ncbigi":[
"78193461"
],
"refseq_locus_tag":[
"Gmet_0986"
],
"refseq_name":[
"mqnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0171",
"name":"nuoM-2",
"notes":{
"original_bigg_ids":[
"Gmet_0171"
]
},
"annotation":{
"ncbigi":[
"78192651"
],
"refseq_locus_tag":[
"Gmet_0171"
],
"refseq_name":[
"nuoM-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0103",
"name":"glmU",
"notes":{
"original_bigg_ids":[
"Gmet_0103"
]
},
"annotation":{
"ncbigi":[
"78192585"
],
"refseq_locus_tag":[
"Gmet_0103"
],
"refseq_name":[
"glmU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0118",
"name":"hypC",
"notes":{
"original_bigg_ids":[
"Gmet_0118"
]
},
"annotation":{
"ncbigi":[
"78192600"
],
"refseq_locus_tag":[
"Gmet_0118"
],
"refseq_name":[
"hypC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3156",
"name":"hypA",
"notes":{
"original_bigg_ids":[
"Gmet_3156"
]
},
"annotation":{
"ncbigi":[
"78195602"
],
"refseq_locus_tag":[
"Gmet_3156"
],
"refseq_name":[
"hypA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3348",
"name":"nuoH-1",
"notes":{
"original_bigg_ids":[
"Gmet_3348"
]
},
"annotation":{
"ncbigi":[
"403378167"
],
"refseq_locus_tag":[
"Gmet_3348"
],
"refseq_name":[
"nuoH-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0119",
"name":"hypF",
"notes":{
"original_bigg_ids":[
"Gmet_0119"
]
},
"annotation":{
"ncbigi":[
"78192601"
],
"refseq_locus_tag":[
"Gmet_0119"
],
"refseq_name":[
"hypF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0116",
"name":"hypE",
"notes":{
"original_bigg_ids":[
"Gmet_0116"
]
},
"annotation":{
"ncbigi":[
"403377929"
],
"refseq_locus_tag":[
"Gmet_0116"
],
"refseq_name":[
"hypE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0924",
"name":"rmlA",
"notes":{
"original_bigg_ids":[
"Gmet_0924"
]
},
"annotation":{
"ncbigi":[
"78193399"
],
"refseq_locus_tag":[
"Gmet_0924"
],
"refseq_name":[
"rmlA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0159",
"name":"nuoG-2",
"notes":{
"original_bigg_ids":[
"Gmet_0159"
]
},
"annotation":{
"ncbigi":[
"78192639"
],
"refseq_locus_tag":[
"Gmet_0159"
],
"refseq_name":[
"nuoG-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0117",
"name":"hypD",
"notes":{
"original_bigg_ids":[
"Gmet_0117"
]
},
"annotation":{
"ncbigi":[
"78192599"
],
"refseq_locus_tag":[
"Gmet_0117"
],
"refseq_name":[
"hypD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3349",
"name":"nuoG-1",
"notes":{
"original_bigg_ids":[
"Gmet_3349"
]
},
"annotation":{
"ncbigi":[
"78195794"
],
"refseq_locus_tag":[
"Gmet_3349"
],
"refseq_name":[
"nuoG-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3330",
"name":"hyaB",
"notes":{
"original_bigg_ids":[
"Gmet_3330"
]
},
"annotation":{
"ncbigi":[
"78195776"
],
"refseq_locus_tag":[
"Gmet_3330"
],
"refseq_name":[
"hyaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3343",
"name":"nuoM-1",
"notes":{
"original_bigg_ids":[
"Gmet_3343"
]
},
"annotation":{
"ncbigi":[
"78195788"
],
"refseq_locus_tag":[
"Gmet_3343"
],
"refseq_name":[
"nuoM-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3353",
"name":"nuoC",
"notes":{
"original_bigg_ids":[
"Gmet_3353"
]
},
"annotation":{
"ncbigi":[
"78195798"
],
"refseq_locus_tag":[
"Gmet_3353"
],
"refseq_name":[
"nuoC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0157",
"name":"nuoF-2",
"notes":{
"original_bigg_ids":[
"Gmet_0157"
]
},
"annotation":{
"ncbigi":[
"78192637"
],
"refseq_locus_tag":[
"Gmet_0157"
],
"refseq_name":[
"nuoF-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0872",
"name":"nifS-2",
"notes":{
"original_bigg_ids":[
"Gmet_0872"
]
},
"annotation":{
"ncbigi":[
"78193347"
],
"refseq_locus_tag":[
"Gmet_0872"
],
"refseq_name":[
"nifS-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0135",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0135"
]
},
"annotation":{
"ncbigi":[
"78192617"
],
"refseq_locus_tag":[
"Gmet_0135"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0152",
"name":"nuoA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0152"
]
},
"annotation":{
"ncbigi":[
"78192632"
],
"refseq_locus_tag":[
"Gmet_0152"
],
"refseq_name":[
"nuoA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3350",
"name":"nuoF-1",
"notes":{
"original_bigg_ids":[
"Gmet_3350"
]
},
"annotation":{
"ncbigi":[
"78195795"
],
"refseq_locus_tag":[
"Gmet_3350"
],
"refseq_name":[
"nuoF-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3344",
"name":"nuoL-1",
"notes":{
"original_bigg_ids":[
"Gmet_3344"
]
},
"annotation":{
"ncbigi":[
"78195789"
],
"refseq_locus_tag":[
"Gmet_3344"
],
"refseq_name":[
"nuoL-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0195",
"name":"pgpA",
"notes":{
"original_bigg_ids":[
"Gmet_0195"
]
},
"annotation":{
"ncbigi":[
"78192674"
],
"refseq_locus_tag":[
"Gmet_0195"
],
"refseq_name":[
"pgpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0168",
"name":"nuoL-2",
"notes":{
"original_bigg_ids":[
"Gmet_0168"
]
},
"annotation":{
"ncbigi":[
"78192648"
],
"refseq_locus_tag":[
"Gmet_0168"
],
"refseq_name":[
"nuoL-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3346",
"name":"nuoJ-1",
"notes":{
"original_bigg_ids":[
"Gmet_3346"
]
},
"annotation":{
"ncbigi":[
"78195791"
],
"refseq_locus_tag":[
"Gmet_3346"
],
"refseq_name":[
"nuoJ-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3351",
"name":"nuoE-1",
"notes":{
"original_bigg_ids":[
"Gmet_3351"
]
},
"annotation":{
"ncbigi":[
"78195796"
],
"refseq_locus_tag":[
"Gmet_3351"
],
"refseq_name":[
"nuoE-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0822",
"name":"pgsA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0822"
]
},
"annotation":{
"ncbigi":[
"78193297"
],
"refseq_locus_tag":[
"Gmet_0822"
],
"refseq_name":[
"pgsA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0992",
"name":"nifS-1",
"notes":{
"original_bigg_ids":[
"Gmet_0992"
]
},
"annotation":{
"ncbigi":[
"78193467"
],
"refseq_locus_tag":[
"Gmet_0992"
],
"refseq_name":[
"nifS-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3342",
"name":"nuoN-1",
"notes":{
"original_bigg_ids":[
"Gmet_3342"
]
},
"annotation":{
"ncbigi":[
"78195787"
],
"refseq_locus_tag":[
"Gmet_3342"
],
"refseq_name":[
"nuoN-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0991",
"name":"nifU",
"notes":{
"original_bigg_ids":[
"Gmet_0991"
]
},
"annotation":{
"ncbigi":[
"78193466"
],
"refseq_locus_tag":[
"Gmet_0991"
],
"refseq_name":[
"nifU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1952",
"name":"pgsA-1",
"notes":{
"original_bigg_ids":[
"Gmet_1952"
]
},
"annotation":{
"ncbigi":[
"78194414"
],
"refseq_locus_tag":[
"Gmet_1952"
],
"refseq_name":[
"pgsA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3352",
"name":"nuoD",
"notes":{
"original_bigg_ids":[
"Gmet_3352"
]
},
"annotation":{
"ncbigi":[
"78195797"
],
"refseq_locus_tag":[
"Gmet_3352"
],
"refseq_name":[
"nuoD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2209",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2209"
]
},
"annotation":{
"ncbigi":[
"78194669"
],
"refseq_locus_tag":[
"Gmet_2209"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0941",
"name":"ppnK",
"notes":{
"original_bigg_ids":[
"Gmet_0941"
]
},
"annotation":{
"ncbigi":[
"78193416"
],
"refseq_locus_tag":[
"Gmet_0941"
],
"refseq_name":[
"ppnK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2107",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2107"
]
},
"annotation":{
"ncbigi":[
"78194569"
],
"refseq_locus_tag":[
"Gmet_2107"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2208",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2208"
]
},
"annotation":{
"ncbigi":[
"78194668"
],
"refseq_locus_tag":[
"Gmet_2208"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1989",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1989"
]
},
"annotation":{
"ncbigi":[
"78194451"
],
"refseq_locus_tag":[
"Gmet_1989"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0945",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0945"
]
},
"annotation":{
"ncbigi":[
"78193420"
],
"refseq_locus_tag":[
"Gmet_0945"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2102",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2102"
]
},
"annotation":{
"ncbigi":[
"78194564"
],
"refseq_locus_tag":[
"Gmet_2102"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2862",
"name":"nadE",
"notes":{
"original_bigg_ids":[
"Gmet_2862"
]
},
"annotation":{
"ncbigi":[
"78195313"
],
"refseq_locus_tag":[
"Gmet_2862"
],
"refseq_name":[
"nadE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2101",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2101"
]
},
"annotation":{
"ncbigi":[
"78194563"
],
"refseq_locus_tag":[
"Gmet_2101"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3251",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3251"
]
},
"annotation":{
"ncbigi":[
"78195697"
],
"refseq_locus_tag":[
"Gmet_3251"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2863",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2863"
]
},
"annotation":{
"ncbigi":[
"403378127"
],
"refseq_locus_tag":[
"Gmet_2863"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1574",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1574"
]
},
"annotation":{
"ncbigi":[
"78194039"
],
"refseq_locus_tag":[
"Gmet_1574"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2100",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2100"
]
},
"annotation":{
"ncbigi":[
"78194562"
],
"refseq_locus_tag":[
"Gmet_2100"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1416",
"name":"pheT",
"notes":{
"original_bigg_ids":[
"Gmet_1416"
]
},
"annotation":{
"ncbigi":[
"78193883"
],
"refseq_locus_tag":[
"Gmet_1416"
],
"refseq_name":[
"pheT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2373",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2373"
]
},
"annotation":{
"ncbigi":[
"78194831"
],
"refseq_locus_tag":[
"Gmet_2373"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1089",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1089"
]
},
"annotation":{
"ncbigi":[
"78193562"
],
"refseq_locus_tag":[
"Gmet_1089"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1415",
"name":"pheS",
"notes":{
"original_bigg_ids":[
"Gmet_1415"
]
},
"annotation":{
"ncbigi":[
"78193882"
],
"refseq_locus_tag":[
"Gmet_1415"
],
"refseq_name":[
"pheS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1524",
"name":"bbsH",
"notes":{
"original_bigg_ids":[
"Gmet_1524"
]
},
"annotation":{
"ncbigi":[
"78193991"
],
"refseq_locus_tag":[
"Gmet_1524"
],
"refseq_name":[
"bbsH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1359",
"name":"icd",
"notes":{
"original_bigg_ids":[
"Gmet_1359"
]
},
"annotation":{
"ncbigi":[
"78193826"
],
"refseq_locus_tag":[
"Gmet_1359"
],
"refseq_name":[
"icd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0387",
"name":"hisH",
"notes":{
"original_bigg_ids":[
"Gmet_0387"
]
},
"annotation":{
"ncbigi":[
"78192863"
],
"refseq_locus_tag":[
"Gmet_0387"
],
"refseq_name":[
"hisH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0389",
"name":"hisF",
"notes":{
"original_bigg_ids":[
"Gmet_0389"
]
},
"annotation":{
"ncbigi":[
"78192865"
],
"refseq_locus_tag":[
"Gmet_0389"
],
"refseq_name":[
"hisF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2686",
"name":"ndk",
"notes":{
"original_bigg_ids":[
"Gmet_2686"
]
},
"annotation":{
"ncbigi":[
"78195137"
],
"refseq_locus_tag":[
"Gmet_2686"
],
"refseq_name":[
"ndk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0386",
"name":"hisB",
"notes":{
"original_bigg_ids":[
"Gmet_0386"
]
},
"annotation":{
"ncbigi":[
"78192862"
],
"refseq_locus_tag":[
"Gmet_0386"
],
"refseq_name":[
"hisB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1738",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1738"
]
},
"annotation":{
"ncbigi":[
"78194202"
],
"refseq_locus_tag":[
"Gmet_1738"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2494",
"name":"trpC",
"notes":{
"original_bigg_ids":[
"Gmet_2494"
]
},
"annotation":{
"ncbigi":[
"78194950"
],
"refseq_locus_tag":[
"Gmet_2494"
],
"refseq_name":[
"trpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1829",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1829"
]
},
"annotation":{
"ncbigi":[
"78194291"
],
"refseq_locus_tag":[
"Gmet_1829"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0695",
"name":"amtB",
"notes":{
"original_bigg_ids":[
"Gmet_0695"
]
},
"annotation":{
"ncbigi":[
"78193170"
],
"refseq_locus_tag":[
"Gmet_0695"
],
"refseq_name":[
"amtB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2440",
"name":"nikQ",
"notes":{
"original_bigg_ids":[
"Gmet_2440"
]
},
"annotation":{
"ncbigi":[
"78194898"
],
"refseq_locus_tag":[
"Gmet_2440"
],
"refseq_name":[
"nikQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2702",
"name":"pstC",
"notes":{
"original_bigg_ids":[
"Gmet_2702"
]
},
"annotation":{
"ncbigi":[
"78195153"
],
"refseq_locus_tag":[
"Gmet_2702"
],
"refseq_name":[
"pstC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2853",
"name":"ilvE",
"notes":{
"original_bigg_ids":[
"Gmet_2853"
]
},
"annotation":{
"ncbigi":[
"78195304"
],
"refseq_locus_tag":[
"Gmet_2853"
],
"refseq_name":[
"ilvE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2441",
"name":"nikMN",
"notes":{
"original_bigg_ids":[
"Gmet_2441"
]
},
"annotation":{
"ncbigi":[
"78194899"
],
"refseq_locus_tag":[
"Gmet_2441"
],
"refseq_name":[
"nikMN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2703",
"name":"pstA",
"notes":{
"original_bigg_ids":[
"Gmet_2703"
]
},
"annotation":{
"ncbigi":[
"78195154"
],
"refseq_locus_tag":[
"Gmet_2703"
],
"refseq_name":[
"pstA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2439",
"name":"nikO",
"notes":{
"original_bigg_ids":[
"Gmet_2439"
]
},
"annotation":{
"ncbigi":[
"78194897"
],
"refseq_locus_tag":[
"Gmet_2439"
],
"refseq_name":[
"nikO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2701",
"name":"pstS",
"notes":{
"original_bigg_ids":[
"Gmet_2701"
]
},
"annotation":{
"ncbigi":[
"78195152"
],
"refseq_locus_tag":[
"Gmet_2701"
],
"refseq_name":[
"pstS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0351",
"name":"ileS",
"notes":{
"original_bigg_ids":[
"Gmet_0351"
]
},
"annotation":{
"ncbigi":[
"78192827"
],
"refseq_locus_tag":[
"Gmet_0351"
],
"refseq_name":[
"ileS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0663",
"name":"nifD",
"notes":{
"original_bigg_ids":[
"Gmet_0663"
]
},
"annotation":{
"ncbigi":[
"78193138"
],
"refseq_locus_tag":[
"Gmet_0663"
],
"refseq_name":[
"nifD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1822",
"name":"livH",
"notes":{
"original_bigg_ids":[
"Gmet_1822"
]
},
"annotation":{
"ncbigi":[
"78194284"
],
"refseq_locus_tag":[
"Gmet_1822"
],
"refseq_name":[
"livH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2704",
"name":"pstB",
"notes":{
"original_bigg_ids":[
"Gmet_2704"
]
},
"annotation":{
"ncbigi":[
"78195155"
],
"refseq_locus_tag":[
"Gmet_2704"
],
"refseq_name":[
"pstB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0672",
"name":"fdxN",
"notes":{
"original_bigg_ids":[
"Gmet_0672"
]
},
"annotation":{
"ncbigi":[
"78193147"
],
"refseq_locus_tag":[
"Gmet_0672"
],
"refseq_name":[
"fdxN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0843",
"name":"bioH",
"notes":{
"original_bigg_ids":[
"Gmet_0843"
]
},
"annotation":{
"ncbigi":[
"78193318"
],
"refseq_locus_tag":[
"Gmet_0843"
],
"refseq_name":[
"bioH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1823",
"name":"livK",
"notes":{
"original_bigg_ids":[
"Gmet_1823"
]
},
"annotation":{
"ncbigi":[
"78194285"
],
"refseq_locus_tag":[
"Gmet_1823"
],
"refseq_name":[
"livK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0671",
"name":"nifX",
"notes":{
"original_bigg_ids":[
"Gmet_0671"
]
},
"annotation":{
"ncbigi":[
"78193146"
],
"refseq_locus_tag":[
"Gmet_0671"
],
"refseq_name":[
"nifX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0669",
"name":"nifEN",
"notes":{
"original_bigg_ids":[
"Gmet_0669"
]
},
"annotation":{
"ncbigi":[
"78193144"
],
"refseq_locus_tag":[
"Gmet_0669"
],
"refseq_name":[
"nifEN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1820",
"name":"livG",
"notes":{
"original_bigg_ids":[
"Gmet_1820"
]
},
"annotation":{
"ncbigi":[
"78194282"
],
"refseq_locus_tag":[
"Gmet_1820"
],
"refseq_name":[
"livG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1986",
"name":"coaX",
"notes":{
"original_bigg_ids":[
"Gmet_1986"
]
},
"annotation":{
"ncbigi":[
"78194448"
],
"refseq_locus_tag":[
"Gmet_1986"
],
"refseq_name":[
"coaX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0664",
"name":"nifK",
"notes":{
"original_bigg_ids":[
"Gmet_0664"
]
},
"annotation":{
"ncbigi":[
"78193139"
],
"refseq_locus_tag":[
"Gmet_0664"
],
"refseq_name":[
"nifK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3419",
"name":"por",
"notes":{
"original_bigg_ids":[
"Gmet_3419"
]
},
"annotation":{
"ncbigi":[
"78195864"
],
"refseq_locus_tag":[
"Gmet_3419"
],
"refseq_name":[
"por"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1821",
"name":"livM",
"notes":{
"original_bigg_ids":[
"Gmet_1821"
]
},
"annotation":{
"ncbigi":[
"78194283"
],
"refseq_locus_tag":[
"Gmet_1821"
],
"refseq_name":[
"livM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0673",
"name":"nifB",
"notes":{
"original_bigg_ids":[
"Gmet_0673"
]
},
"annotation":{
"ncbigi":[
"78193148"
],
"refseq_locus_tag":[
"Gmet_0673"
],
"refseq_name":[
"nifB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1819",
"name":"livF",
"notes":{
"original_bigg_ids":[
"Gmet_1819"
]
},
"annotation":{
"ncbigi":[
"78194281"
],
"refseq_locus_tag":[
"Gmet_1819"
],
"refseq_name":[
"livF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0662",
"name":"nifH",
"notes":{
"original_bigg_ids":[
"Gmet_0662"
]
},
"annotation":{
"ncbigi":[
"78193137"
],
"refseq_locus_tag":[
"Gmet_0662"
],
"refseq_name":[
"nifH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2293",
"name":"guaB",
"notes":{
"original_bigg_ids":[
"Gmet_2293"
]
},
"annotation":{
"ncbigi":[
"78194751"
],
"refseq_locus_tag":[
"Gmet_2293"
],
"refseq_name":[
"guaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2374",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2374"
]
},
"annotation":{
"ncbigi":[
"78194832"
],
"refseq_locus_tag":[
"Gmet_2374"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0880",
"name":"gppA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0880"
]
},
"annotation":{
"ncbigi":[
"78193355"
],
"refseq_locus_tag":[
"Gmet_0880"
],
"refseq_name":[
"gppA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3200",
"name":"nadD",
"notes":{
"original_bigg_ids":[
"Gmet_3200"
]
},
"annotation":{
"ncbigi":[
"78195646"
],
"refseq_locus_tag":[
"Gmet_3200"
],
"refseq_name":[
"nadD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0503",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0503"
]
},
"annotation":{
"ncbigi":[
"78192979"
],
"refseq_locus_tag":[
"Gmet_0503"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1309",
"name":"vorC",
"notes":{
"original_bigg_ids":[
"Gmet_1309"
]
},
"annotation":{
"ncbigi":[
"78193778"
],
"refseq_locus_tag":[
"Gmet_1309"
],
"refseq_name":[
"vorC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1308",
"name":"vorB",
"notes":{
"original_bigg_ids":[
"Gmet_1308"
]
},
"annotation":{
"ncbigi":[
"78193777"
],
"refseq_locus_tag":[
"Gmet_1308"
],
"refseq_name":[
"vorB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0149",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0149"
]
},
"annotation":{
"ncbigi":[
"78192631"
],
"refseq_locus_tag":[
"Gmet_0149"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0467",
"name":"cobT",
"notes":{
"original_bigg_ids":[
"Gmet_0467"
]
},
"annotation":{
"ncbigi":[
"78192943"
],
"refseq_locus_tag":[
"Gmet_0467"
],
"refseq_name":[
"cobT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1988",
"name":"nadC",
"notes":{
"original_bigg_ids":[
"Gmet_1988"
]
},
"annotation":{
"ncbigi":[
"78194450"
],
"refseq_locus_tag":[
"Gmet_1988"
],
"refseq_name":[
"nadC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3239",
"name":"hppA",
"notes":{
"original_bigg_ids":[
"Gmet_3239"
]
},
"annotation":{
"ncbigi":[
"78195685"
],
"refseq_locus_tag":[
"Gmet_3239"
],
"refseq_name":[
"hppA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0332",
"name":"narI-1",
"notes":{
"original_bigg_ids":[
"Gmet_0332"
]
},
"annotation":{
"ncbigi":[
"78192808"
],
"refseq_locus_tag":[
"Gmet_0332"
],
"refseq_name":[
"narI-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0949",
"name":"iorB-2",
"notes":{
"original_bigg_ids":[
"Gmet_0949"
]
},
"annotation":{
"ncbigi":[
"78193424"
],
"refseq_locus_tag":[
"Gmet_0949"
],
"refseq_name":[
"iorB-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1826",
"name":"iorB-1",
"notes":{
"original_bigg_ids":[
"Gmet_1826"
]
},
"annotation":{
"ncbigi":[
"78194288"
],
"refseq_locus_tag":[
"Gmet_1826"
],
"refseq_name":[
"iorB-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0328",
"name":"narC-1",
"notes":{
"original_bigg_ids":[
"Gmet_0328"
]
},
"annotation":{
"ncbigi":[
"78192804"
],
"refseq_locus_tag":[
"Gmet_0328"
],
"refseq_name":[
"narC-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1827",
"name":"iorA-1",
"notes":{
"original_bigg_ids":[
"Gmet_1827"
]
},
"annotation":{
"ncbigi":[
"78194289"
],
"refseq_locus_tag":[
"Gmet_1827"
],
"refseq_name":[
"iorA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0189",
"name":"hemB",
"notes":{
"original_bigg_ids":[
"Gmet_0189"
]
},
"annotation":{
"ncbigi":[
"78192668"
],
"refseq_locus_tag":[
"Gmet_0189"
],
"refseq_name":[
"hemB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1022",
"name":"narI-2",
"notes":{
"original_bigg_ids":[
"Gmet_1022"
]
},
"annotation":{
"ncbigi":[
"403378007"
],
"refseq_locus_tag":[
"Gmet_1022"
],
"refseq_name":[
"narI-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0304",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0304"
]
},
"annotation":{
"ncbigi":[
"78192782"
],
"refseq_locus_tag":[
"Gmet_0304"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1306",
"name":"vorD",
"notes":{
"original_bigg_ids":[
"Gmet_1306"
]
},
"annotation":{
"ncbigi":[
"403378032"
],
"refseq_locus_tag":[
"Gmet_1306"
],
"refseq_name":[
"vorD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1019",
"name":"narC-2",
"notes":{
"original_bigg_ids":[
"Gmet_1019"
]
},
"annotation":{
"ncbigi":[
"78193494"
],
"refseq_locus_tag":[
"Gmet_1019"
],
"refseq_name":[
"narC-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0948",
"name":"iorA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0948"
]
},
"annotation":{
"ncbigi":[
"78193423"
],
"refseq_locus_tag":[
"Gmet_0948"
],
"refseq_name":[
"iorA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1020",
"name":"narG-2",
"notes":{
"original_bigg_ids":[
"Gmet_1020"
]
},
"annotation":{
"ncbigi":[
"78193495"
],
"refseq_locus_tag":[
"Gmet_1020"
],
"refseq_name":[
"narG-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1307",
"name":"vorA",
"notes":{
"original_bigg_ids":[
"Gmet_1307"
]
},
"annotation":{
"ncbigi":[
"78193776"
],
"refseq_locus_tag":[
"Gmet_1307"
],
"refseq_name":[
"vorA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2673",
"name":"coaBC",
"notes":{
"original_bigg_ids":[
"Gmet_2673"
]
},
"annotation":{
"ncbigi":[
"78195124"
],
"refseq_locus_tag":[
"Gmet_2673"
],
"refseq_name":[
"coaBC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0329",
"name":"narG-1",
"notes":{
"original_bigg_ids":[
"Gmet_0329"
]
},
"annotation":{
"ncbigi":[
"78192805"
],
"refseq_locus_tag":[
"Gmet_0329"
],
"refseq_name":[
"narG-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3248",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3248"
]
},
"annotation":{
"ncbigi":[
"78195694"
],
"refseq_locus_tag":[
"Gmet_3248"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0331",
"name":"narJ",
"notes":{
"original_bigg_ids":[
"Gmet_0331"
]
},
"annotation":{
"ncbigi":[
"78192807"
],
"refseq_locus_tag":[
"Gmet_0331"
],
"refseq_name":[
"narJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3249",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3249"
]
},
"annotation":{
"ncbigi":[
"78195695"
],
"refseq_locus_tag":[
"Gmet_3249"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1265",
"name":"leuA",
"notes":{
"original_bigg_ids":[
"Gmet_1265"
]
},
"annotation":{
"ncbigi":[
"78193734"
],
"refseq_locus_tag":[
"Gmet_1265"
],
"refseq_name":[
"leuA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1021",
"name":"narH-2",
"notes":{
"original_bigg_ids":[
"Gmet_1021"
]
},
"annotation":{
"ncbigi":[
"78193496"
],
"refseq_locus_tag":[
"Gmet_1021"
],
"refseq_name":[
"narH-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1262",
"name":"ilvC",
"notes":{
"original_bigg_ids":[
"Gmet_1262"
]
},
"annotation":{
"ncbigi":[
"78193731"
],
"refseq_locus_tag":[
"Gmet_1262"
],
"refseq_name":[
"ilvC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0330",
"name":"narH-1",
"notes":{
"original_bigg_ids":[
"Gmet_0330"
]
},
"annotation":{
"ncbigi":[
"78192806"
],
"refseq_locus_tag":[
"Gmet_0330"
],
"refseq_name":[
"narH-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1275",
"name":"kdsB",
"notes":{
"original_bigg_ids":[
"Gmet_1275"
]
},
"annotation":{
"ncbigi":[
"78193744"
],
"refseq_locus_tag":[
"Gmet_1275"
],
"refseq_name":[
"kdsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1125",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1125"
]
},
"annotation":{
"ncbigi":[
"78193596"
],
"refseq_locus_tag":[
"Gmet_1125"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0333",
"name":"narK",
"notes":{
"original_bigg_ids":[
"Gmet_0333"
]
},
"annotation":{
"ncbigi":[
"78192809"
],
"refseq_locus_tag":[
"Gmet_0333"
],
"refseq_name":[
"narK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2940",
"name":"ppdK",
"notes":{
"original_bigg_ids":[
"Gmet_2940"
]
},
"annotation":{
"ncbigi":[
"78195391"
],
"refseq_locus_tag":[
"Gmet_2940"
],
"refseq_name":[
"ppdK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1279",
"name":"kdsC",
"notes":{
"original_bigg_ids":[
"Gmet_1279"
]
},
"annotation":{
"ncbigi":[
"78193748"
],
"refseq_locus_tag":[
"Gmet_1279"
],
"refseq_name":[
"kdsC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0334",
"name":"narT",
"notes":{
"original_bigg_ids":[
"Gmet_0334"
]
},
"annotation":{
"ncbigi":[
"78192810"
],
"refseq_locus_tag":[
"Gmet_0334"
],
"refseq_name":[
"narT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1277",
"name":"kdsA",
"notes":{
"original_bigg_ids":[
"Gmet_1277"
]
},
"annotation":{
"ncbigi":[
"78193746"
],
"refseq_locus_tag":[
"Gmet_1277"
],
"refseq_name":[
"kdsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1092",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1092"
]
},
"annotation":{
"ncbigi":[
"78193565"
],
"refseq_locus_tag":[
"Gmet_1092"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3243",
"name":"roo",
"notes":{
"original_bigg_ids":[
"Gmet_3243"
]
},
"annotation":{
"ncbigi":[
"78195689"
],
"refseq_locus_tag":[
"Gmet_3243"
],
"refseq_name":[
"roo"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3241",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3241"
]
},
"annotation":{
"ncbigi":[
"78195687"
],
"refseq_locus_tag":[
"Gmet_3241"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0133",
"name":"ppk",
"notes":{
"original_bigg_ids":[
"Gmet_0133"
]
},
"annotation":{
"ncbigi":[
"78192615"
],
"refseq_locus_tag":[
"Gmet_0133"
],
"refseq_name":[
"ppk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3171",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3171"
]
},
"annotation":{
"ncbigi":[
"78195617"
],
"refseq_locus_tag":[
"Gmet_3171"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0863",
"name":"tyrA",
"notes":{
"original_bigg_ids":[
"Gmet_0863"
]
},
"annotation":{
"ncbigi":[
"78193338"
],
"refseq_locus_tag":[
"Gmet_0863"
],
"refseq_name":[
"tyrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0039",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0039"
]
},
"annotation":{
"ncbigi":[
"78192522"
],
"refseq_locus_tag":[
"Gmet_0039"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3493",
"name":"norZ",
"notes":{
"original_bigg_ids":[
"Gmet_3493"
]
},
"annotation":{
"ncbigi":[
"78195931"
],
"refseq_locus_tag":[
"Gmet_3493"
],
"refseq_name":[
"norZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0038",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0038"
]
},
"annotation":{
"ncbigi":[
"78192521"
],
"refseq_locus_tag":[
"Gmet_0038"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1293",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1293"
]
},
"annotation":{
"ncbigi":[
"78193762"
],
"refseq_locus_tag":[
"Gmet_1293"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1105",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1105"
]
},
"annotation":{
"ncbigi":[
"78193578"
],
"refseq_locus_tag":[
"Gmet_1105"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2953",
"name":"hemG",
"notes":{
"original_bigg_ids":[
"Gmet_2953"
]
},
"annotation":{
"ncbigi":[
"78195403"
],
"refseq_locus_tag":[
"Gmet_2953"
],
"refseq_name":[
"hemG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1875",
"name":"rdgB",
"notes":{
"original_bigg_ids":[
"Gmet_1875"
]
},
"annotation":{
"ncbigi":[
"78194337"
],
"refseq_locus_tag":[
"Gmet_1875"
],
"refseq_name":[
"rdgB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1762",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1762"
]
},
"annotation":{
"ncbigi":[
"78194226"
],
"refseq_locus_tag":[
"Gmet_1762"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0887",
"name":"arnT",
"notes":{
"original_bigg_ids":[
"Gmet_0887"
]
},
"annotation":{
"ncbigi":[
"78193362"
],
"refseq_locus_tag":[
"Gmet_0887"
],
"refseq_name":[
"arnT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0295",
"name":"nrfH",
"notes":{
"original_bigg_ids":[
"Gmet_0295"
]
},
"annotation":{
"ncbigi":[
"78192773"
],
"refseq_locus_tag":[
"Gmet_0295"
],
"refseq_name":[
"nrfH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0985",
"name":"larG",
"notes":{
"original_bigg_ids":[
"Gmet_0985"
]
},
"annotation":{
"ncbigi":[
"78193460"
],
"refseq_locus_tag":[
"Gmet_0985"
],
"refseq_name":[
"larG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0545",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0545"
]
},
"annotation":{
"ncbigi":[
"78193021"
],
"refseq_locus_tag":[
"Gmet_0545"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3551",
"name":"hemY",
"notes":{
"original_bigg_ids":[
"Gmet_3551"
]
},
"annotation":{
"ncbigi":[
"403378183"
],
"refseq_locus_tag":[
"Gmet_3551"
],
"refseq_name":[
"hemY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0770",
"name":"ppsA",
"notes":{
"original_bigg_ids":[
"Gmet_0770"
]
},
"annotation":{
"ncbigi":[
"78193245"
],
"refseq_locus_tag":[
"Gmet_0770"
],
"refseq_name":[
"ppsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0294",
"name":"nrfA-1",
"notes":{
"original_bigg_ids":[
"Gmet_0294"
]
},
"annotation":{
"ncbigi":[
"78192772"
],
"refseq_locus_tag":[
"Gmet_0294"
],
"refseq_name":[
"nrfA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0213",
"name":"dapL",
"notes":{
"original_bigg_ids":[
"Gmet_0213"
]
},
"annotation":{
"ncbigi":[
"78192692"
],
"refseq_locus_tag":[
"Gmet_0213"
],
"refseq_name":[
"dapL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0296",
"name":"nrfA-2",
"notes":{
"original_bigg_ids":[
"Gmet_0296"
]
},
"annotation":{
"ncbigi":[
"78192774"
],
"refseq_locus_tag":[
"Gmet_0296"
],
"refseq_name":[
"nrfA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2300",
"name":"leuS",
"notes":{
"original_bigg_ids":[
"Gmet_2300"
]
},
"annotation":{
"ncbigi":[
"78194758"
],
"refseq_locus_tag":[
"Gmet_2300"
],
"refseq_name":[
"leuS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2904",
"name":"purD",
"notes":{
"original_bigg_ids":[
"Gmet_2904"
]
},
"annotation":{
"ncbigi":[
"78195355"
],
"refseq_locus_tag":[
"Gmet_2904"
],
"refseq_name":[
"purD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2511",
"name":"bkdF",
"notes":{
"original_bigg_ids":[
"Gmet_2511"
]
},
"annotation":{
"ncbigi":[
"78194966"
],
"refseq_locus_tag":[
"Gmet_2511"
],
"refseq_name":[
"bkdF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2492",
"name":"trpF",
"notes":{
"original_bigg_ids":[
"Gmet_2492"
]
},
"annotation":{
"ncbigi":[
"78194948"
],
"refseq_locus_tag":[
"Gmet_2492"
],
"refseq_name":[
"trpF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2350",
"name":"lpxB",
"notes":{
"original_bigg_ids":[
"Gmet_2350"
]
},
"annotation":{
"ncbigi":[
"78194808"
],
"refseq_locus_tag":[
"Gmet_2350"
],
"refseq_name":[
"lpxB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2510",
"name":"bkdB",
"notes":{
"original_bigg_ids":[
"Gmet_2510"
]
},
"annotation":{
"ncbigi":[
"78194965"
],
"refseq_locus_tag":[
"Gmet_2510"
],
"refseq_name":[
"bkdB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1844",
"name":"purM",
"notes":{
"original_bigg_ids":[
"Gmet_1844"
]
},
"annotation":{
"ncbigi":[
"78194306"
],
"refseq_locus_tag":[
"Gmet_1844"
],
"refseq_name":[
"purM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2509",
"name":"bkdA",
"notes":{
"original_bigg_ids":[
"Gmet_2509"
]
},
"annotation":{
"ncbigi":[
"78194964"
],
"refseq_locus_tag":[
"Gmet_2509"
],
"refseq_name":[
"bkdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1897",
"name":"hisI",
"notes":{
"original_bigg_ids":[
"Gmet_1897"
]
},
"annotation":{
"ncbigi":[
"78194359"
],
"refseq_locus_tag":[
"Gmet_1897"
],
"refseq_name":[
"hisI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0205",
"name":"argF",
"notes":{
"original_bigg_ids":[
"Gmet_0205"
]
},
"annotation":{
"ncbigi":[
"78192684"
],
"refseq_locus_tag":[
"Gmet_0205"
],
"refseq_name":[
"argF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2360",
"name":"lysS",
"notes":{
"original_bigg_ids":[
"Gmet_2360"
]
},
"annotation":{
"ncbigi":[
"78194818"
],
"refseq_locus_tag":[
"Gmet_2360"
],
"refseq_name":[
"lysS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2088",
"name":"bamA",
"notes":{
"original_bigg_ids":[
"Gmet_2088"
]
},
"annotation":{
"ncbigi":[
"78194550"
],
"refseq_locus_tag":[
"Gmet_2088"
],
"refseq_name":[
"bamA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0916",
"name":"purC",
"notes":{
"original_bigg_ids":[
"Gmet_0916"
]
},
"annotation":{
"ncbigi":[
"78193391"
],
"refseq_locus_tag":[
"Gmet_0916"
],
"refseq_name":[
"purC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3297",
"name":"atoA",
"notes":{
"original_bigg_ids":[
"Gmet_3297"
]
},
"annotation":{
"ncbigi":[
"78195743"
],
"refseq_locus_tag":[
"Gmet_3297"
],
"refseq_name":[
"atoA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0798",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0798"
]
},
"annotation":{
"ncbigi":[
"78193273"
],
"refseq_locus_tag":[
"Gmet_0798"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2054",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2054"
]
},
"annotation":{
"ncbigi":[
"78194516"
],
"refseq_locus_tag":[
"Gmet_2054"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3244",
"name":"larA",
"notes":{
"original_bigg_ids":[
"Gmet_3244"
]
},
"annotation":{
"ncbigi":[
"78195690"
],
"refseq_locus_tag":[
"Gmet_3244"
],
"refseq_name":[
"larA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0390",
"name":"hisE",
"notes":{
"original_bigg_ids":[
"Gmet_0390"
]
},
"annotation":{
"ncbigi":[
"78192866"
],
"refseq_locus_tag":[
"Gmet_0390"
],
"refseq_name":[
"hisE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3296",
"name":"atoD",
"notes":{
"original_bigg_ids":[
"Gmet_3296"
]
},
"annotation":{
"ncbigi":[
"78195742"
],
"refseq_locus_tag":[
"Gmet_3296"
],
"refseq_name":[
"atoD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1940",
"name":"purQ",
"notes":{
"original_bigg_ids":[
"Gmet_1940"
]
},
"annotation":{
"ncbigi":[
"78194402"
],
"refseq_locus_tag":[
"Gmet_1940"
],
"refseq_name":[
"purQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0844",
"name":"bioC",
"notes":{
"original_bigg_ids":[
"Gmet_0844"
]
},
"annotation":{
"ncbigi":[
"78193319"
],
"refseq_locus_tag":[
"Gmet_0844"
],
"refseq_name":[
"bioC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1941",
"name":"purSL",
"notes":{
"original_bigg_ids":[
"Gmet_1941"
]
},
"annotation":{
"ncbigi":[
"78194403"
],
"refseq_locus_tag":[
"Gmet_1941"
],
"refseq_name":[
"purSL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3304",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3304"
]
},
"annotation":{
"ncbigi":[
"78195750"
],
"refseq_locus_tag":[
"Gmet_3304"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0388",
"name":"hisA",
"notes":{
"original_bigg_ids":[
"Gmet_0388"
]
},
"annotation":{
"ncbigi":[
"78192864"
],
"refseq_locus_tag":[
"Gmet_0388"
],
"refseq_name":[
"hisA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3178",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3178"
]
},
"annotation":{
"ncbigi":[
"78195624"
],
"refseq_locus_tag":[
"Gmet_3178"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3294",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3294"
]
},
"annotation":{
"ncbigi":[
"78195740"
],
"refseq_locus_tag":[
"Gmet_3294"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1104",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1104"
]
},
"annotation":{
"ncbigi":[
"78193577"
],
"refseq_locus_tag":[
"Gmet_1104"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1354",
"name":"proS",
"notes":{
"original_bigg_ids":[
"Gmet_1354"
]
},
"annotation":{
"ncbigi":[
"78193821"
],
"refseq_locus_tag":[
"Gmet_1354"
],
"refseq_name":[
"proS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2058",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2058"
]
},
"annotation":{
"ncbigi":[
"78194520"
],
"refseq_locus_tag":[
"Gmet_2058"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2848",
"name":"prsA",
"notes":{
"original_bigg_ids":[
"Gmet_2848"
]
},
"annotation":{
"ncbigi":[
"78195299"
],
"refseq_locus_tag":[
"Gmet_2848"
],
"refseq_name":[
"prsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2902",
"name":"ppcA",
"notes":{
"original_bigg_ids":[
"Gmet_2902"
]
},
"annotation":{
"ncbigi":[
"78195353"
],
"refseq_locus_tag":[
"Gmet_2902"
],
"refseq_name":[
"ppcA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0864",
"name":"aroA",
"notes":{
"original_bigg_ids":[
"Gmet_0864"
]
},
"annotation":{
"ncbigi":[
"78193339"
],
"refseq_locus_tag":[
"Gmet_0864"
],
"refseq_name":[
"aroA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1263",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1263"
]
},
"annotation":{
"ncbigi":[
"78193732"
],
"refseq_locus_tag":[
"Gmet_1263"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1483",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1483"
]
},
"annotation":{
"ncbigi":[
"78193950"
],
"refseq_locus_tag":[
"Gmet_1483"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2471",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2471"
]
},
"annotation":{
"ncbigi":[
"78194929"
],
"refseq_locus_tag":[
"Gmet_2471"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3289",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3289"
]
},
"annotation":{
"ncbigi":[
"78195735"
],
"refseq_locus_tag":[
"Gmet_3289"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3292",
"name":"mccA",
"notes":{
"original_bigg_ids":[
"Gmet_3292"
]
},
"annotation":{
"ncbigi":[
"78195738"
],
"refseq_locus_tag":[
"Gmet_3292"
],
"refseq_name":[
"mccA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3290",
"name":"mccB",
"notes":{
"original_bigg_ids":[
"Gmet_3290"
]
},
"annotation":{
"ncbigi":[
"78195736"
],
"refseq_locus_tag":[
"Gmet_3290"
],
"refseq_name":[
"mccB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1355",
"name":"pyrF",
"notes":{
"original_bigg_ids":[
"Gmet_1355"
]
},
"annotation":{
"ncbigi":[
"78193822"
],
"refseq_locus_tag":[
"Gmet_1355"
],
"refseq_name":[
"pyrF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1123",
"name":"prpD",
"notes":{
"original_bigg_ids":[
"Gmet_1123"
]
},
"annotation":{
"ncbigi":[
"78193594"
],
"refseq_locus_tag":[
"Gmet_1123"
],
"refseq_name":[
"prpD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1630",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1630"
]
},
"annotation":{
"ncbigi":[
"78194094"
],
"refseq_locus_tag":[
"Gmet_1630"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1264",
"name":"pssA",
"notes":{
"original_bigg_ids":[
"Gmet_1264"
]
},
"annotation":{
"ncbigi":[
"78193733"
],
"refseq_locus_tag":[
"Gmet_1264"
],
"refseq_name":[
"pssA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1364",
"name":"korC",
"notes":{
"original_bigg_ids":[
"Gmet_1364"
]
},
"annotation":{
"ncbigi":[
"78193831"
],
"refseq_locus_tag":[
"Gmet_1364"
],
"refseq_name":[
"korC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1035",
"name":"pta",
"notes":{
"original_bigg_ids":[
"Gmet_1035"
]
},
"annotation":{
"ncbigi":[
"78193508"
],
"refseq_locus_tag":[
"Gmet_1035"
],
"refseq_name":[
"pta"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1363",
"name":"korB",
"notes":{
"original_bigg_ids":[
"Gmet_1363"
]
},
"annotation":{
"ncbigi":[
"78193830"
],
"refseq_locus_tag":[
"Gmet_1363"
],
"refseq_name":[
"korB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1759",
"name":"coaD",
"notes":{
"original_bigg_ids":[
"Gmet_1759"
]
},
"annotation":{
"ncbigi":[
"78194223"
],
"refseq_locus_tag":[
"Gmet_1759"
],
"refseq_name":[
"coaD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1122",
"name":"prpB",
"notes":{
"original_bigg_ids":[
"Gmet_1122"
]
},
"annotation":{
"ncbigi":[
"78193593"
],
"refseq_locus_tag":[
"Gmet_1122"
],
"refseq_name":[
"prpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1362",
"name":"korA",
"notes":{
"original_bigg_ids":[
"Gmet_1362"
]
},
"annotation":{
"ncbigi":[
"78193829"
],
"refseq_locus_tag":[
"Gmet_1362"
],
"refseq_name":[
"korA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1124",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1124"
]
},
"annotation":{
"ncbigi":[
"78193595"
],
"refseq_locus_tag":[
"Gmet_1124"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1274",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1274"
]
},
"annotation":{
"ncbigi":[
"403378029"
],
"refseq_locus_tag":[
"Gmet_1274"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1600",
"name":"fabD-2",
"notes":{
"original_bigg_ids":[
"Gmet_1600"
]
},
"annotation":{
"ncbigi":[
"78194065"
],
"refseq_locus_tag":[
"Gmet_1600"
],
"refseq_name":[
"fabD-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1361",
"name":"korD",
"notes":{
"original_bigg_ids":[
"Gmet_1361"
]
},
"annotation":{
"ncbigi":[
"78193828"
],
"refseq_locus_tag":[
"Gmet_1361"
],
"refseq_name":[
"korD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0952",
"name":"argJ",
"notes":{
"original_bigg_ids":[
"Gmet_0952"
]
},
"annotation":{
"ncbigi":[
"78193427"
],
"refseq_locus_tag":[
"Gmet_0952"
],
"refseq_name":[
"argJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1691",
"name":"fabD-1",
"notes":{
"original_bigg_ids":[
"Gmet_1691"
]
},
"annotation":{
"ncbigi":[
"403378058"
],
"refseq_locus_tag":[
"Gmet_1691"
],
"refseq_name":[
"fabD-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0122",
"name":"pyk",
"notes":{
"original_bigg_ids":[
"Gmet_0122"
]
},
"annotation":{
"ncbigi":[
"78192604"
],
"refseq_locus_tag":[
"Gmet_0122"
],
"refseq_name":[
"pyk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1938",
"name":"pyrE",
"notes":{
"original_bigg_ids":[
"Gmet_1938"
]
},
"annotation":{
"ncbigi":[
"78194400"
],
"refseq_locus_tag":[
"Gmet_1938"
],
"refseq_name":[
"pyrE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0928",
"name":"mrdA",
"notes":{
"original_bigg_ids":[
"Gmet_0928"
]
},
"annotation":{
"ncbigi":[
"78193403"
],
"refseq_locus_tag":[
"Gmet_0928"
],
"refseq_name":[
"mrdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2465",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2465"
]
},
"annotation":{
"ncbigi":[
"78194923"
],
"refseq_locus_tag":[
"Gmet_2465"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2778",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2778"
]
},
"annotation":{
"ncbigi":[
"78195229"
],
"refseq_locus_tag":[
"Gmet_2778"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3544",
"name":"nadA",
"notes":{
"original_bigg_ids":[
"Gmet_3544"
]
},
"annotation":{
"ncbigi":[
"78195982"
],
"refseq_locus_tag":[
"Gmet_3544"
],
"refseq_name":[
"nadA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1360",
"name":"mdh",
"notes":{
"original_bigg_ids":[
"Gmet_1360"
]
},
"annotation":{
"ncbigi":[
"78193827"
],
"refseq_locus_tag":[
"Gmet_1360"
],
"refseq_name":[
"mdh"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0899",
"name":"proC",
"notes":{
"original_bigg_ids":[
"Gmet_0899"
]
},
"annotation":{
"ncbigi":[
"78193374"
],
"refseq_locus_tag":[
"Gmet_0899"
],
"refseq_name":[
"proC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1627",
"name":"ribH",
"notes":{
"original_bigg_ids":[
"Gmet_1627"
]
},
"annotation":{
"ncbigi":[
"78194091"
],
"refseq_locus_tag":[
"Gmet_1627"
],
"refseq_name":[
"ribH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1825",
"name":"paaK-2",
"notes":{
"original_bigg_ids":[
"Gmet_1825"
]
},
"annotation":{
"ncbigi":[
"78194287"
],
"refseq_locus_tag":[
"Gmet_1825"
],
"refseq_name":[
"paaK-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1625",
"name":"ribE",
"notes":{
"original_bigg_ids":[
"Gmet_1625"
]
},
"annotation":{
"ncbigi":[
"78194089"
],
"refseq_locus_tag":[
"Gmet_1625"
],
"refseq_name":[
"ribE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1637",
"name":"maeB",
"notes":{
"original_bigg_ids":[
"Gmet_1637"
]
},
"annotation":{
"ncbigi":[
"78194101"
],
"refseq_locus_tag":[
"Gmet_1637"
],
"refseq_name":[
"maeB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1353",
"name":"ispG",
"notes":{
"original_bigg_ids":[
"Gmet_1353"
]
},
"annotation":{
"ncbigi":[
"78193820"
],
"refseq_locus_tag":[
"Gmet_1353"
],
"refseq_name":[
"ispG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0950",
"name":"paaK-3",
"notes":{
"original_bigg_ids":[
"Gmet_0950"
]
},
"annotation":{
"ncbigi":[
"78193425"
],
"refseq_locus_tag":[
"Gmet_0950"
],
"refseq_name":[
"paaK-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1818",
"name":"paaK-1",
"notes":{
"original_bigg_ids":[
"Gmet_1818"
]
},
"annotation":{
"ncbigi":[
"78194280"
],
"refseq_locus_tag":[
"Gmet_1818"
],
"refseq_name":[
"paaK-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2812",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2812"
]
},
"annotation":{
"ncbigi":[
"78195263"
],
"refseq_locus_tag":[
"Gmet_2812"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1643",
"name":"panC",
"notes":{
"original_bigg_ids":[
"Gmet_1643"
]
},
"annotation":{
"ncbigi":[
"78194107"
],
"refseq_locus_tag":[
"Gmet_1643"
],
"refseq_name":[
"panC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0059",
"name":"ispF",
"notes":{
"original_bigg_ids":[
"Gmet_0059"
]
},
"annotation":{
"ncbigi":[
"78192541"
],
"refseq_locus_tag":[
"Gmet_0059"
],
"refseq_name":[
"ispF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0409",
"name":"mraY",
"notes":{
"original_bigg_ids":[
"Gmet_0409"
]
},
"annotation":{
"ncbigi":[
"78192885"
],
"refseq_locus_tag":[
"Gmet_0409"
],
"refseq_name":[
"mraY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0060",
"name":"ispD",
"notes":{
"original_bigg_ids":[
"Gmet_0060"
]
},
"annotation":{
"ncbigi":[
"78192542"
],
"refseq_locus_tag":[
"Gmet_0060"
],
"refseq_name":[
"ispD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1148",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1148"
]
},
"annotation":{
"ncbigi":[
"78193619"
],
"refseq_locus_tag":[
"Gmet_1148"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1297",
"name":"nrdJ",
"notes":{
"original_bigg_ids":[
"Gmet_1297"
]
},
"annotation":{
"ncbigi":[
"78193766"
],
"refseq_locus_tag":[
"Gmet_1297"
],
"refseq_name":[
"nrdJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2098",
"name":"ptb",
"notes":{
"original_bigg_ids":[
"Gmet_2098"
]
},
"annotation":{
"ncbigi":[
"78194560"
],
"refseq_locus_tag":[
"Gmet_2098"
],
"refseq_name":[
"ptb"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0067",
"name":"rpe",
"notes":{
"original_bigg_ids":[
"Gmet_0067"
]
},
"annotation":{
"ncbigi":[
"78192549"
],
"refseq_locus_tag":[
"Gmet_0067"
],
"refseq_name":[
"rpe"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1566",
"name":"metY-3",
"notes":{
"original_bigg_ids":[
"Gmet_1566"
]
},
"annotation":{
"ncbigi":[
"78194031"
],
"refseq_locus_tag":[
"Gmet_1566"
],
"refseq_name":[
"metY-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0816",
"name":"pyc",
"notes":{
"original_bigg_ids":[
"Gmet_0816"
]
},
"annotation":{
"ncbigi":[
"78193291"
],
"refseq_locus_tag":[
"Gmet_0816"
],
"refseq_name":[
"pyc"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0819",
"name":"metY-2",
"notes":{
"original_bigg_ids":[
"Gmet_0819"
]
},
"annotation":{
"ncbigi":[
"78193294"
],
"refseq_locus_tag":[
"Gmet_0819"
],
"refseq_name":[
"metY-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1604",
"name":"rpiB-1",
"notes":{
"original_bigg_ids":[
"Gmet_1604"
]
},
"annotation":{
"ncbigi":[
"78194069"
],
"refseq_locus_tag":[
"Gmet_1604"
],
"refseq_name":[
"rpiB-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2621",
"name":"rpiB-2",
"notes":{
"original_bigg_ids":[
"Gmet_2621"
]
},
"annotation":{
"ncbigi":[
"78195073"
],
"refseq_locus_tag":[
"Gmet_2621"
],
"refseq_name":[
"rpiB-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2125",
"name":"pcmI",
"notes":{
"original_bigg_ids":[
"Gmet_2125"
]
},
"annotation":{
"ncbigi":[
"78194587"
],
"refseq_locus_tag":[
"Gmet_2125"
],
"refseq_name":[
"pcmI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2390",
"name":"metY-1",
"notes":{
"original_bigg_ids":[
"Gmet_2390"
]
},
"annotation":{
"ncbigi":[
"78194848"
],
"refseq_locus_tag":[
"Gmet_2390"
],
"refseq_name":[
"metY-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2123",
"name":"pcmG",
"notes":{
"original_bigg_ids":[
"Gmet_2123"
]
},
"annotation":{
"ncbigi":[
"78194585"
],
"refseq_locus_tag":[
"Gmet_2123"
],
"refseq_name":[
"pcmG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1290",
"name":"metK-1",
"notes":{
"original_bigg_ids":[
"Gmet_1290"
]
},
"annotation":{
"ncbigi":[
"78193759"
],
"refseq_locus_tag":[
"Gmet_1290"
],
"refseq_name":[
"metK-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2121",
"name":"pcmE",
"notes":{
"original_bigg_ids":[
"Gmet_2121"
]
},
"annotation":{
"ncbigi":[
"78194583"
],
"refseq_locus_tag":[
"Gmet_2121"
],
"refseq_name":[
"pcmE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2122",
"name":"pcmF",
"notes":{
"original_bigg_ids":[
"Gmet_2122"
]
},
"annotation":{
"ncbigi":[
"403378085"
],
"refseq_locus_tag":[
"Gmet_2122"
],
"refseq_name":[
"pcmF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0469",
"name":"cobC",
"notes":{
"original_bigg_ids":[
"Gmet_0469"
]
},
"annotation":{
"ncbigi":[
"78192945"
],
"refseq_locus_tag":[
"Gmet_0469"
],
"refseq_name":[
"cobC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2126",
"name":"pcmJ",
"notes":{
"original_bigg_ids":[
"Gmet_2126"
]
},
"annotation":{
"ncbigi":[
"78194588"
],
"refseq_locus_tag":[
"Gmet_2126"
],
"refseq_name":[
"pcmJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0920",
"name":"gmhA",
"notes":{
"original_bigg_ids":[
"Gmet_0920"
]
},
"annotation":{
"ncbigi":[
"78193395"
],
"refseq_locus_tag":[
"Gmet_0920"
],
"refseq_name":[
"gmhA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2120",
"name":"pcmD",
"notes":{
"original_bigg_ids":[
"Gmet_2120"
]
},
"annotation":{
"ncbigi":[
"78194582"
],
"refseq_locus_tag":[
"Gmet_2120"
],
"refseq_name":[
"pcmD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2860",
"name":"cysN",
"notes":{
"original_bigg_ids":[
"Gmet_2860"
]
},
"annotation":{
"ncbigi":[
"78195311"
],
"refseq_locus_tag":[
"Gmet_2860"
],
"refseq_name":[
"cysN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2119",
"name":"pcmC",
"notes":{
"original_bigg_ids":[
"Gmet_2119"
]
},
"annotation":{
"ncbigi":[
"78194581"
],
"refseq_locus_tag":[
"Gmet_2119"
],
"refseq_name":[
"pcmC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2753",
"name":"pdhB",
"notes":{
"original_bigg_ids":[
"Gmet_2753"
]
},
"annotation":{
"ncbigi":[
"78195204"
],
"refseq_locus_tag":[
"Gmet_2753"
],
"refseq_name":[
"pdhB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2859",
"name":"cysD",
"notes":{
"original_bigg_ids":[
"Gmet_2859"
]
},
"annotation":{
"ncbigi":[
"78195310"
],
"refseq_locus_tag":[
"Gmet_2859"
],
"refseq_name":[
"cysD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2760",
"name":"pdhA",
"notes":{
"original_bigg_ids":[
"Gmet_2760"
]
},
"annotation":{
"ncbigi":[
"78195211"
],
"refseq_locus_tag":[
"Gmet_2760"
],
"refseq_name":[
"pdhA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2006",
"name":"sufS",
"notes":{
"original_bigg_ids":[
"Gmet_2006"
]
},
"annotation":{
"ncbigi":[
"78194468"
],
"refseq_locus_tag":[
"Gmet_2006"
],
"refseq_name":[
"sufS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2752",
"name":"aceF",
"notes":{
"original_bigg_ids":[
"Gmet_2752"
]
},
"annotation":{
"ncbigi":[
"78195203"
],
"refseq_locus_tag":[
"Gmet_2752"
],
"refseq_name":[
"aceF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3404",
"name":"pdxA",
"notes":{
"original_bigg_ids":[
"Gmet_3404"
]
},
"annotation":{
"ncbigi":[
"78195849"
],
"refseq_locus_tag":[
"Gmet_3404"
],
"refseq_name":[
"pdxA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0061",
"name":"selA",
"notes":{
"original_bigg_ids":[
"Gmet_0061"
]
},
"annotation":{
"ncbigi":[
"78192543"
],
"refseq_locus_tag":[
"Gmet_0061"
],
"refseq_name":[
"selA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1885",
"name":"pdxJ",
"notes":{
"original_bigg_ids":[
"Gmet_1885"
]
},
"annotation":{
"ncbigi":[
"78194347"
],
"refseq_locus_tag":[
"Gmet_1885"
],
"refseq_name":[
"pdxJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2907",
"name":"selD",
"notes":{
"original_bigg_ids":[
"Gmet_2907"
]
},
"annotation":{
"ncbigi":[
"78195358"
],
"refseq_locus_tag":[
"Gmet_2907"
],
"refseq_name":[
"selD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2638",
"name":"pckA",
"notes":{
"original_bigg_ids":[
"Gmet_2638"
]
},
"annotation":{
"ncbigi":[
"78195090"
],
"refseq_locus_tag":[
"Gmet_2638"
],
"refseq_name":[
"pckA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0870",
"name":"cysE",
"notes":{
"original_bigg_ids":[
"Gmet_0870"
]
},
"annotation":{
"ncbigi":[
"78193345"
],
"refseq_locus_tag":[
"Gmet_0870"
],
"refseq_name":[
"cysE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3072",
"name":"tdcB",
"notes":{
"original_bigg_ids":[
"Gmet_3072"
]
},
"annotation":{
"ncbigi":[
"78195519"
],
"refseq_locus_tag":[
"Gmet_3072"
],
"refseq_name":[
"tdcB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3169",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3169"
]
},
"annotation":{
"ncbigi":[
"78195615"
],
"refseq_locus_tag":[
"Gmet_3169"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2378",
"name":"serA",
"notes":{
"original_bigg_ids":[
"Gmet_2378"
]
},
"annotation":{
"ncbigi":[
"78194836"
],
"refseq_locus_tag":[
"Gmet_2378"
],
"refseq_name":[
"serA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1640",
"name":"pfk-1",
"notes":{
"original_bigg_ids":[
"Gmet_1640"
]
},
"annotation":{
"ncbigi":[
"78194104"
],
"refseq_locus_tag":[
"Gmet_1640"
],
"refseq_name":[
"pfk-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3528",
"name":"serS",
"notes":{
"original_bigg_ids":[
"Gmet_3528"
]
},
"annotation":{
"ncbigi":[
"78195966"
],
"refseq_locus_tag":[
"Gmet_3528"
],
"refseq_name":[
"serS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0938",
"name":"pfk-2",
"notes":{
"original_bigg_ids":[
"Gmet_0938"
]
},
"annotation":{
"ncbigi":[
"78193413"
],
"refseq_locus_tag":[
"Gmet_0938"
],
"refseq_name":[
"pfk-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0476",
"name":"cbiX",
"notes":{
"original_bigg_ids":[
"Gmet_0476"
]
},
"annotation":{
"ncbigi":[
"403377956"
],
"refseq_locus_tag":[
"Gmet_0476"
],
"refseq_name":[
"cbiX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1886",
"name":"glmM",
"notes":{
"original_bigg_ids":[
"Gmet_1886"
]
},
"annotation":{
"ncbigi":[
"78194348"
],
"refseq_locus_tag":[
"Gmet_1886"
],
"refseq_name":[
"glmM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2458",
"name":"pgi",
"notes":{
"original_bigg_ids":[
"Gmet_2458"
]
},
"annotation":{
"ncbigi":[
"78194916"
],
"refseq_locus_tag":[
"Gmet_2458"
],
"refseq_name":[
"pgi"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3231",
"name":"cysG",
"notes":{
"original_bigg_ids":[
"Gmet_3231"
]
},
"annotation":{
"ncbigi":[
"78195677"
],
"refseq_locus_tag":[
"Gmet_3231"
],
"refseq_name":[
"cysG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1947",
"name":"pgk",
"notes":{
"original_bigg_ids":[
"Gmet_1947"
]
},
"annotation":{
"ncbigi":[
"78194409"
],
"refseq_locus_tag":[
"Gmet_1947"
],
"refseq_name":[
"pgk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2618",
"name":"pgl",
"notes":{
"original_bigg_ids":[
"Gmet_2618"
]
},
"annotation":{
"ncbigi":[
"78195070"
],
"refseq_locus_tag":[
"Gmet_2618"
],
"refseq_name":[
"pgl"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1392",
"name":"aroE",
"notes":{
"original_bigg_ids":[
"Gmet_1392"
]
},
"annotation":{
"ncbigi":[
"78193859"
],
"refseq_locus_tag":[
"Gmet_1392"
],
"refseq_name":[
"aroE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3529",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3529"
]
},
"annotation":{
"ncbigi":[
"78195967"
],
"refseq_locus_tag":[
"Gmet_3529"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0977",
"name":"aroK",
"notes":{
"original_bigg_ids":[
"Gmet_0977"
]
},
"annotation":{
"ncbigi":[
"403378002"
],
"refseq_locus_tag":[
"Gmet_0977"
],
"refseq_name":[
"aroK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1653",
"name":"gpmA",
"notes":{
"original_bigg_ids":[
"Gmet_1653"
]
},
"annotation":{
"ncbigi":[
"78194117"
],
"refseq_locus_tag":[
"Gmet_1653"
],
"refseq_name":[
"gpmA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0583",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0583"
]
},
"annotation":{
"ncbigi":[
"78193059"
],
"refseq_locus_tag":[
"Gmet_0583"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3203",
"name":"gpmI",
"notes":{
"original_bigg_ids":[
"Gmet_3203"
]
},
"annotation":{
"ncbigi":[
"78195649"
],
"refseq_locus_tag":[
"Gmet_3203"
],
"refseq_name":[
"gpmI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1428",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1428"
]
},
"annotation":{
"ncbigi":[
"78193895"
],
"refseq_locus_tag":[
"Gmet_1428"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2410",
"name":"sodA",
"notes":{
"original_bigg_ids":[
"Gmet_2410"
]
},
"annotation":{
"ncbigi":[
"78194868"
],
"refseq_locus_tag":[
"Gmet_2410"
],
"refseq_name":[
"sodA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0990",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0990"
]
},
"annotation":{
"ncbigi":[
"78193465"
],
"refseq_locus_tag":[
"Gmet_0990"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3395",
"name":"gabD",
"notes":{
"original_bigg_ids":[
"Gmet_3395"
]
},
"annotation":{
"ncbigi":[
"403378170"
],
"refseq_locus_tag":[
"Gmet_3395"
],
"refseq_name":[
"gabD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2142",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2142"
]
},
"annotation":{
"ncbigi":[
"78194604"
],
"refseq_locus_tag":[
"Gmet_2142"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2260",
"name":"sucD-3",
"notes":{
"original_bigg_ids":[
"Gmet_2260"
]
},
"annotation":{
"ncbigi":[
"78194719"
],
"refseq_locus_tag":[
"Gmet_2260"
],
"refseq_name":[
"sucD-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2069",
"name":"sucC-2",
"notes":{
"original_bigg_ids":[
"Gmet_2069"
]
},
"annotation":{
"ncbigi":[
"78194531"
],
"refseq_locus_tag":[
"Gmet_2069"
],
"refseq_name":[
"sucC-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2261",
"name":"sucC-3",
"notes":{
"original_bigg_ids":[
"Gmet_2261"
]
},
"annotation":{
"ncbigi":[
"78194720"
],
"refseq_locus_tag":[
"Gmet_2261"
],
"refseq_name":[
"sucC-3"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2068",
"name":"sucD-2",
"notes":{
"original_bigg_ids":[
"Gmet_2068"
]
},
"annotation":{
"ncbigi":[
"78194530"
],
"refseq_locus_tag":[
"Gmet_2068"
],
"refseq_name":[
"sucD-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0729",
"name":"sucC-1",
"notes":{
"original_bigg_ids":[
"Gmet_0729"
]
},
"annotation":{
"ncbigi":[
"78193204"
],
"refseq_locus_tag":[
"Gmet_0729"
],
"refseq_name":[
"sucC-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0730",
"name":"sucD-1",
"notes":{
"original_bigg_ids":[
"Gmet_0730"
]
},
"annotation":{
"ncbigi":[
"78193205"
],
"refseq_locus_tag":[
"Gmet_0730"
],
"refseq_name":[
"sucD-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2520",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_2520"
]
},
"annotation":{
"ncbigi":[
"78194974"
],
"refseq_locus_tag":[
"Gmet_2520"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1570",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1570"
]
},
"annotation":{
"ncbigi":[
"78194035"
],
"refseq_locus_tag":[
"Gmet_1570"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3222",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_3222"
]
},
"annotation":{
"ncbigi":[
"78195668"
],
"refseq_locus_tag":[
"Gmet_3222"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0925",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0925"
]
},
"annotation":{
"ncbigi":[
"78193400"
],
"refseq_locus_tag":[
"Gmet_0925"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2472",
"name":"rmlD",
"notes":{
"original_bigg_ids":[
"Gmet_2472"
]
},
"annotation":{
"ncbigi":[
"78194930"
],
"refseq_locus_tag":[
"Gmet_2472"
],
"refseq_name":[
"rmlD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2473",
"name":"rmlB",
"notes":{
"original_bigg_ids":[
"Gmet_2473"
]
},
"annotation":{
"ncbigi":[
"78194931"
],
"refseq_locus_tag":[
"Gmet_2473"
],
"refseq_name":[
"rmlB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2347",
"name":"lpxK",
"notes":{
"original_bigg_ids":[
"Gmet_2347"
]
},
"annotation":{
"ncbigi":[
"78194805"
],
"refseq_locus_tag":[
"Gmet_2347"
],
"refseq_name":[
"lpxK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0270",
"name":"ltaA",
"notes":{
"original_bigg_ids":[
"Gmet_0270"
]
},
"annotation":{
"ncbigi":[
"78192748"
],
"refseq_locus_tag":[
"Gmet_0270"
],
"refseq_name":[
"ltaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3503",
"name":"ltaE",
"notes":{
"original_bigg_ids":[
"Gmet_3503"
]
},
"annotation":{
"ncbigi":[
"78195941"
],
"refseq_locus_tag":[
"Gmet_3503"
],
"refseq_name":[
"ltaE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0487",
"name":"cobD",
"notes":{
"original_bigg_ids":[
"Gmet_0487"
]
},
"annotation":{
"ncbigi":[
"78192963"
],
"refseq_locus_tag":[
"Gmet_0487"
],
"refseq_name":[
"cobD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1631",
"name":"thrC",
"notes":{
"original_bigg_ids":[
"Gmet_1631"
]
},
"annotation":{
"ncbigi":[
"78194095"
],
"refseq_locus_tag":[
"Gmet_1631"
],
"refseq_name":[
"thrC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1411",
"name":"thrS",
"notes":{
"original_bigg_ids":[
"Gmet_1411"
]
},
"annotation":{
"ncbigi":[
"78193878"
],
"refseq_locus_tag":[
"Gmet_1411"
],
"refseq_name":[
"thrS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1567",
"name":"thiS-2",
"notes":{
"original_bigg_ids":[
"Gmet_1567"
]
},
"annotation":{
"ncbigi":[
"78194032"
],
"refseq_locus_tag":[
"Gmet_1567"
],
"refseq_name":[
"thiS-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2933",
"name":"thiS-1",
"notes":{
"original_bigg_ids":[
"Gmet_2933"
]
},
"annotation":{
"ncbigi":[
"403378138"
],
"refseq_locus_tag":[
"Gmet_2933"
],
"refseq_name":[
"thiS-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1568",
"name":"thiF-2",
"notes":{
"original_bigg_ids":[
"Gmet_1568"
]
},
"annotation":{
"ncbigi":[
"78194033"
],
"refseq_locus_tag":[
"Gmet_1568"
],
"refseq_name":[
"thiF-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2855",
"name":"thiF-1",
"notes":{
"original_bigg_ids":[
"Gmet_2855"
]
},
"annotation":{
"ncbigi":[
"78195306"
],
"refseq_locus_tag":[
"Gmet_2855"
],
"refseq_name":[
"thiF-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2935",
"name":"tenI",
"notes":{
"original_bigg_ids":[
"Gmet_2935"
]
},
"annotation":{
"ncbigi":[
"78195386"
],
"refseq_locus_tag":[
"Gmet_2935"
],
"refseq_name":[
"tenI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0552",
"name":"tklB",
"notes":{
"original_bigg_ids":[
"Gmet_0552"
]
},
"annotation":{
"ncbigi":[
"78193028"
],
"refseq_locus_tag":[
"Gmet_0552"
],
"refseq_name":[
"tklB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0178",
"name":"tkt",
"notes":{
"original_bigg_ids":[
"Gmet_0178"
]
},
"annotation":{
"ncbigi":[
"78192657"
],
"refseq_locus_tag":[
"Gmet_0178"
],
"refseq_name":[
"tkt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0551",
"name":"tklA",
"notes":{
"original_bigg_ids":[
"Gmet_0551"
]
},
"annotation":{
"ncbigi":[
"403377966"
],
"refseq_locus_tag":[
"Gmet_0551"
],
"refseq_name":[
"tklA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0378",
"name":"thyX",
"notes":{
"original_bigg_ids":[
"Gmet_0378"
]
},
"annotation":{
"ncbigi":[
"78192854"
],
"refseq_locus_tag":[
"Gmet_0378"
],
"refseq_name":[
"thyX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3213",
"name":"thiL",
"notes":{
"original_bigg_ids":[
"Gmet_3213"
]
},
"annotation":{
"ncbigi":[
"78195659"
],
"refseq_locus_tag":[
"Gmet_3213"
],
"refseq_name":[
"thiL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1948",
"name":"tpi",
"notes":{
"original_bigg_ids":[
"Gmet_1948"
]
},
"annotation":{
"ncbigi":[
"78194410"
],
"refseq_locus_tag":[
"Gmet_1948"
],
"refseq_name":[
"tpi"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3070",
"name":"trxB",
"notes":{
"original_bigg_ids":[
"Gmet_3070"
]
},
"annotation":{
"ncbigi":[
"78195517"
],
"refseq_locus_tag":[
"Gmet_3070"
],
"refseq_name":[
"trxB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2482",
"name":"trpB1",
"notes":{
"original_bigg_ids":[
"Gmet_2482"
]
},
"annotation":{
"ncbigi":[
"78194940"
],
"refseq_locus_tag":[
"Gmet_2482"
],
"refseq_name":[
"trpB1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2493",
"name":"trpB2",
"notes":{
"original_bigg_ids":[
"Gmet_2493"
]
},
"annotation":{
"ncbigi":[
"78194949"
],
"refseq_locus_tag":[
"Gmet_2493"
],
"refseq_name":[
"trpB2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2477",
"name":"trpA",
"notes":{
"original_bigg_ids":[
"Gmet_2477"
]
},
"annotation":{
"ncbigi":[
"78194935"
],
"refseq_locus_tag":[
"Gmet_2477"
],
"refseq_name":[
"trpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1960",
"name":"trpS",
"notes":{
"original_bigg_ids":[
"Gmet_1960"
]
},
"annotation":{
"ncbigi":[
"78194422"
],
"refseq_locus_tag":[
"Gmet_1960"
],
"refseq_name":[
"trpS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1040",
"name":"tupB",
"notes":{
"original_bigg_ids":[
"Gmet_1040"
]
},
"annotation":{
"ncbigi":[
"78193513"
],
"refseq_locus_tag":[
"Gmet_1040"
],
"refseq_name":[
"tupB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1039",
"name":"tupC",
"notes":{
"original_bigg_ids":[
"Gmet_1039"
]
},
"annotation":{
"ncbigi":[
"78193512"
],
"refseq_locus_tag":[
"Gmet_1039"
],
"refseq_name":[
"tupC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1041",
"name":"tupA",
"notes":{
"original_bigg_ids":[
"Gmet_1041"
]
},
"annotation":{
"ncbigi":[
"78193514"
],
"refseq_locus_tag":[
"Gmet_1041"
],
"refseq_name":[
"tupA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2934",
"name":"thiG",
"notes":{
"original_bigg_ids":[
"Gmet_2934"
]
},
"annotation":{
"ncbigi":[
"78195385"
],
"refseq_locus_tag":[
"Gmet_2934"
],
"refseq_name":[
"thiG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1182",
"name":"tyrS",
"notes":{
"original_bigg_ids":[
"Gmet_1182"
]
},
"annotation":{
"ncbigi":[
"78193653"
],
"refseq_locus_tag":[
"Gmet_1182"
],
"refseq_name":[
"tyrS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2355",
"name":"lpxD",
"notes":{
"original_bigg_ids":[
"Gmet_2355"
]
},
"annotation":{
"ncbigi":[
"78194813"
],
"refseq_locus_tag":[
"Gmet_2355"
],
"refseq_name":[
"lpxD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0407",
"name":"murE",
"notes":{
"original_bigg_ids":[
"Gmet_0407"
]
},
"annotation":{
"ncbigi":[
"78192883"
],
"refseq_locus_tag":[
"Gmet_0407"
],
"refseq_name":[
"murE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2352",
"name":"gnnA",
"notes":{
"original_bigg_ids":[
"Gmet_2352"
]
},
"annotation":{
"ncbigi":[
"78194810"
],
"refseq_locus_tag":[
"Gmet_2352"
],
"refseq_name":[
"gnnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2351",
"name":"gnnB",
"notes":{
"original_bigg_ids":[
"Gmet_2351"
]
},
"annotation":{
"ncbigi":[
"78194809"
],
"refseq_locus_tag":[
"Gmet_2351"
],
"refseq_name":[
"gnnB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1994",
"name":"capL",
"notes":{
"original_bigg_ids":[
"Gmet_1994"
]
},
"annotation":{
"ncbigi":[
"78194456"
],
"refseq_locus_tag":[
"Gmet_1994"
],
"refseq_name":[
"capL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1504",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1504"
]
},
"annotation":{
"ncbigi":[
"78193971"
],
"refseq_locus_tag":[
"Gmet_1504"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1489",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_1489"
]
},
"annotation":{
"ncbigi":[
"403378045"
],
"refseq_locus_tag":[
"Gmet_1489"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2353",
"name":"lpxA-1",
"notes":{
"original_bigg_ids":[
"Gmet_2353"
]
},
"annotation":{
"ncbigi":[
"78194811"
],
"refseq_locus_tag":[
"Gmet_2353"
],
"refseq_name":[
"lpxA-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2567",
"name":"lpxA-2",
"notes":{
"original_bigg_ids":[
"Gmet_2567"
]
},
"annotation":{
"ncbigi":[
"78195019"
],
"refseq_locus_tag":[
"Gmet_2567"
],
"refseq_name":[
"lpxA-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0382",
"name":"murA",
"notes":{
"original_bigg_ids":[
"Gmet_0382"
]
},
"annotation":{
"ncbigi":[
"403377952"
],
"refseq_locus_tag":[
"Gmet_0382"
],
"refseq_name":[
"murA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0412",
"name":"murG",
"notes":{
"original_bigg_ids":[
"Gmet_0412"
]
},
"annotation":{
"ncbigi":[
"78192888"
],
"refseq_locus_tag":[
"Gmet_0412"
],
"refseq_name":[
"murG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0410",
"name":"murD",
"notes":{
"original_bigg_ids":[
"Gmet_0410"
]
},
"annotation":{
"ncbigi":[
"78192886"
],
"refseq_locus_tag":[
"Gmet_0410"
],
"refseq_name":[
"murD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0413",
"name":"murC",
"notes":{
"original_bigg_ids":[
"Gmet_0413"
]
},
"annotation":{
"ncbigi":[
"78192889"
],
"refseq_locus_tag":[
"Gmet_0413"
],
"refseq_name":[
"murC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0414",
"name":"murB",
"notes":{
"original_bigg_ids":[
"Gmet_0414"
]
},
"annotation":{
"ncbigi":[
"78192890"
],
"refseq_locus_tag":[
"Gmet_0414"
],
"refseq_name":[
"murB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3133",
"name":"uppP",
"notes":{
"original_bigg_ids":[
"Gmet_3133"
]
},
"annotation":{
"ncbigi":[
"78195580"
],
"refseq_locus_tag":[
"Gmet_3133"
],
"refseq_name":[
"uppP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0690",
"name":"",
"notes":{
"original_bigg_ids":[
"Gmet_0690"
]
},
"annotation":{
"ncbigi":[
"78193165"
],
"refseq_locus_tag":[
"Gmet_0690"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1254",
"name":"uppS",
"notes":{
"original_bigg_ids":[
"Gmet_1254"
]
},
"annotation":{
"ncbigi":[
"78193723"
],
"refseq_locus_tag":[
"Gmet_1254"
],
"refseq_name":[
"uppS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1486",
"name":"galE-2",
"notes":{
"original_bigg_ids":[
"Gmet_1486"
]
},
"annotation":{
"ncbigi":[
"78193953"
],
"refseq_locus_tag":[
"Gmet_1486"
],
"refseq_name":[
"galE-2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2329",
"name":"galE-1",
"notes":{
"original_bigg_ids":[
"Gmet_2329"
]
},
"annotation":{
"ncbigi":[
"403378097"
],
"refseq_locus_tag":[
"Gmet_2329"
],
"refseq_name":[
"galE-1"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1430",
"name":"ugd",
"notes":{
"original_bigg_ids":[
"Gmet_1430"
]
},
"annotation":{
"ncbigi":[
"78193897"
],
"refseq_locus_tag":[
"Gmet_1430"
],
"refseq_name":[
"ugd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0883",
"name":"arnA",
"notes":{
"original_bigg_ids":[
"Gmet_0883"
]
},
"annotation":{
"ncbigi":[
"78193358"
],
"refseq_locus_tag":[
"Gmet_0883"
],
"refseq_name":[
"arnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1431",
"name":"uxs",
"notes":{
"original_bigg_ids":[
"Gmet_1431"
]
},
"annotation":{
"ncbigi":[
"78193898"
],
"refseq_locus_tag":[
"Gmet_1431"
],
"refseq_name":[
"uxs"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0886",
"name":"arnB",
"notes":{
"original_bigg_ids":[
"Gmet_0886"
]
},
"annotation":{
"ncbigi":[
"403377997"
],
"refseq_locus_tag":[
"Gmet_0886"
],
"refseq_name":[
"arnB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3176",
"name":"galT",
"notes":{
"original_bigg_ids":[
"Gmet_3176"
]
},
"annotation":{
"ncbigi":[
"403378153"
],
"refseq_locus_tag":[
"Gmet_3176"
],
"refseq_name":[
"galT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0408",
"name":"murF",
"notes":{
"original_bigg_ids":[
"Gmet_0408"
]
},
"annotation":{
"ncbigi":[
"78192884"
],
"refseq_locus_tag":[
"Gmet_0408"
],
"refseq_name":[
"murF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2607",
"name":"lpxC",
"notes":{
"original_bigg_ids":[
"Gmet_2607"
]
},
"annotation":{
"ncbigi":[
"78195059"
],
"refseq_locus_tag":[
"Gmet_2607"
],
"refseq_name":[
"lpxC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0884",
"name":"arnG",
"notes":{
"original_bigg_ids":[
"Gmet_0884"
]
},
"annotation":{
"ncbigi":[
"78193359"
],
"refseq_locus_tag":[
"Gmet_0884"
],
"refseq_name":[
"arnG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0882",
"name":"arnD",
"notes":{
"original_bigg_ids":[
"Gmet_0882"
]
},
"annotation":{
"ncbigi":[
"78193357"
],
"refseq_locus_tag":[
"Gmet_0882"
],
"refseq_name":[
"arnD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0885",
"name":"arnC",
"notes":{
"original_bigg_ids":[
"Gmet_0885"
]
},
"annotation":{
"ncbigi":[
"78193360"
],
"refseq_locus_tag":[
"Gmet_0885"
],
"refseq_name":[
"arnC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_3235",
"name":"hemD",
"notes":{
"original_bigg_ids":[
"Gmet_3235"
]
},
"annotation":{
"ncbigi":[
"78195681"
],
"refseq_locus_tag":[
"Gmet_3235"
],
"refseq_name":[
"hemD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0016",
"name":"hemE",
"notes":{
"original_bigg_ids":[
"Gmet_0016"
]
},
"annotation":{
"ncbigi":[
"78192499"
],
"refseq_locus_tag":[
"Gmet_0016"
],
"refseq_name":[
"hemE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1768",
"name":"pyrR",
"notes":{
"original_bigg_ids":[
"Gmet_1768"
]
},
"annotation":{
"ncbigi":[
"78194232"
],
"refseq_locus_tag":[
"Gmet_1768"
],
"refseq_name":[
"pyrR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_1252",
"name":"pyrH",
"notes":{
"original_bigg_ids":[
"Gmet_1252"
]
},
"annotation":{
"ncbigi":[
"78193721"
],
"refseq_locus_tag":[
"Gmet_1252"
],
"refseq_name":[
"pyrH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_2776",
"name":"lpxH",
"notes":{
"original_bigg_ids":[
"Gmet_2776"
]
},
"annotation":{
"ncbigi":[
"78195227"
],
"refseq_locus_tag":[
"Gmet_2776"
],
"refseq_name":[
"lpxH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"Gmet_0956",
"name":"valS",
"notes":{
"original_bigg_ids":[
"Gmet_0956"
]
},
"annotation":{
"ncbigi":[
"78193431"
],
"refseq_locus_tag":[
"Gmet_0956"
],
"refseq_name":[
"valS"
],
"sbo":"SBO:0000243"
}
}
],
"id":"iAF987",
"compartments":{
"c":"cytosol",
"e":"extracellular space",
"p":"periplasm"
},
"version":"1"
}