{
"metabolites":[
{
"id":"3hoctaACP_c",
"name":"(R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C402H637O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hoctaACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hoctaACP"
],
"kegg.compound":[
"C16220"
],
"metanetx.chemical":[
"MNXM6417"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15371"
]
}
},
{
"id":"3hcvac11eACP_c",
"name":"(R)-3-hydroxy-cis-vacc-11-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C402H635O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hcvac11eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hcvac11eACP"
],
"metanetx.chemical":[
"MNXM6557"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15370"
]
}
},
{
"id":"t3c11vaceACP_c",
"name":"Trans-3-cis-11-vacceoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C402H633O143N96P1S3",
"notes":{
"original_bigg_ids":[
"t3c11vaceACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"t3c11vaceACP"
],
"metanetx.chemical":[
"MNXM5958"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15568"
]
}
},
{
"id":"3haACP_c",
"name":"(3R)-3-Hydroxyacyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C388H609O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3haACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3haACP"
],
"biocyc":[
"META:OH-ACYL-ACP"
],
"chebi":[
"CHEBI:84648"
],
"kegg.compound":[
"C01271"
],
"metanetx.chemical":[
"MNXM5861"
],
"reactome.compound":[
"8862371"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11836"
]
}
},
{
"id":"but2eACP_c",
"name":"But-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C388H607O143N96P1S3",
"notes":{
"original_bigg_ids":[
"but2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"but2eACP"
],
"kegg.compound":[
"C04246"
],
"metanetx.chemical":[
"MNXM3229"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11465"
]
}
},
{
"id":"3hhexACP_c",
"name":"(R)-3-Hydroxyhexanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C390H613O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hhexACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hhexACP"
],
"chebi":[
"CHEBI:326"
],
"kegg.compound":[
"C05747"
],
"lipidmaps":[
"LMFA07060006"
],
"metanetx.chemical":[
"MNXM25370"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11479"
]
}
},
{
"id":"thex2eACP_c",
"name":"Trans-Hex-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C390H611O143N96P1S3",
"notes":{
"original_bigg_ids":[
"thex2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"thex2eACP"
],
"biocyc":[
"META:Hex-2-enoyl-ACPs"
],
"chebi":[
"CHEBI:10727"
],
"kegg.compound":[
"C05748"
],
"lipidmaps":[
"LMFA07060007"
],
"metanetx.chemical":[
"MNXM24502"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11473"
]
}
},
{
"id":"toct2eACP_c",
"name":"Trans-Oct-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C392H615O143N96P1S3",
"notes":{
"original_bigg_ids":[
"toct2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"toct2eACP"
],
"biocyc":[
"META:2-Octenoyl-ACPs"
],
"kegg.compound":[
"C05751"
],
"lipidmaps":[
"LMFA07060009"
],
"metanetx.chemical":[
"MNXM23766"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11471"
]
}
},
{
"id":"3hoctACP_c",
"name":"(R)-3-Hydroxyoctanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C392H617O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hoctACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hoctACP"
],
"biocyc":[
"META:3-Hydroxy-octanoyl-ACPs"
],
"kegg.compound":[
"C04620"
],
"metanetx.chemical":[
"MNXM10019"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11483"
]
}
},
{
"id":"3dhguln_c",
"name":"3-Dehydro-L-gulonate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"3dhguln_c"
]
},
"annotation":{
"bigg.metabolite":[
"3dhguln"
],
"biocyc":[
"META:3-KETO-L-GULONATE"
],
"chebi":[
"CHEBI:16142",
"CHEBI:57655",
"CHEBI:11777",
"CHEBI:19992",
"CHEBI:1482"
],
"hmdb":[
"HMDB06334"
],
"inchi_key":[
"WTAHRPBPWHCMHW-LWKDLAHASA-M"
],
"kegg.compound":[
"C00618"
],
"metanetx.chemical":[
"MNXM736"
],
"reactome.compound":[
"5661262"
],
"sabiork":[
"2117"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00473"
]
}
},
{
"id":"3dhgulnp_c",
"name":"3-keto-L-gulonate-6-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C6H8O10P",
"notes":{
"original_bigg_ids":[
"3dhgulnp_c"
]
},
"annotation":{
"bigg.metabolite":[
"3dhgulnp"
],
"biocyc":[
"META:CPD-2343"
],
"chebi":[
"CHEBI:58774",
"CHEBI:49039"
],
"inchi_key":[
"BDUIIKXSXFDPEC-LWKDLAHASA-K"
],
"kegg.compound":[
"C14899"
],
"metanetx.chemical":[
"MNXM1170"
],
"sabiork":[
"22145"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10596"
]
}
},
{
"id":"uri_p",
"name":"Uridine",
"compartment":"p",
"charge":0,
"formula":"C9H12N2O6",
"notes":{
"original_bigg_ids":[
"uri_p"
]
},
"annotation":{
"bigg.metabolite":[
"uri"
],
"biocyc":[
"META:URIDINE"
],
"chebi":[
"CHEBI:46386",
"CHEBI:9893",
"CHEBI:46460",
"CHEBI:16704",
"CHEBI:46391",
"CHEBI:15296",
"CHEBI:46463",
"CHEBI:27227"
],
"hmdb":[
"HMDB00296"
],
"inchi_key":[
"DRTQHJPVMGBUCF-XVFCMESISA-N"
],
"kegg.compound":[
"C00299"
],
"metanetx.chemical":[
"MNXM288"
],
"sabiork":[
"1326"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00249"
]
}
},
{
"id":"pi_p",
"name":"Phosphate",
"compartment":"p",
"charge":-2,
"formula":"HO4P",
"notes":{
"original_bigg_ids":[
"pi_p"
]
},
"annotation":{
"bigg.metabolite":[
"pi"
],
"biocyc":[
"META:Pi",
"META:CPD-16459",
"META:PHOSPHATE-GROUP"
],
"chebi":[
"CHEBI:26078",
"CHEBI:18367",
"CHEBI:29139",
"CHEBI:39739",
"CHEBI:43470",
"CHEBI:35780",
"CHEBI:43474",
"CHEBI:26020",
"CHEBI:45024",
"CHEBI:39745",
"CHEBI:29137",
"CHEBI:14791",
"CHEBI:7793"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/db5219ee-60cb-4370-b066-340c9faf069c",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/84684967-eade-48d4-b25d-c4aede0a0836",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/ad82c39b-2edb-4953-b971-79a2d2ea6e26",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/aac01fea-4223-49c1-8b12-cd50f11ebfc8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c581b2ce-6238-45de-abc0-60ca8d47ed04"
],
"hmdb":[
"HMDB02105",
"HMDB00973",
"HMDB01429",
"HMDB02142",
"HMDB05947"
],
"inchi_key":[
"NBIIXXVUZAFLBC-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00009"
],
"kegg.drug":[
"D05467"
],
"metanetx.chemical":[
"MNXM9"
],
"reactome.compound":[
"5228339",
"113550",
"8851513",
"113551",
"109277",
"29372",
"8851226",
"113548"
],
"sabiork":[
"36"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27787",
"cpd00009"
]
}
},
{
"id":"cytd_p",
"name":"Cytidine",
"compartment":"p",
"charge":0,
"formula":"C9H13N3O5",
"notes":{
"original_bigg_ids":[
"cytd_p"
]
},
"annotation":{
"bigg.metabolite":[
"cytd"
],
"biocyc":[
"META:CYTIDINE"
],
"chebi":[
"CHEBI:41686",
"CHEBI:41709",
"CHEBI:4053",
"CHEBI:23515",
"CHEBI:17562",
"CHEBI:14063",
"CHEBI:41649",
"CHEBI:41704"
],
"hmdb":[
"HMDB00089"
],
"inchi_key":[
"UHDGCWIWMRVCDJ-XVFCMESISA-N"
],
"kegg.compound":[
"C00475"
],
"kegg.drug":[
"D07769"
],
"metanetx.chemical":[
"MNXM338"
],
"sabiork":[
"1340"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00367"
]
}
},
{
"id":"adn_p",
"name":"Adenosine",
"compartment":"p",
"charge":0,
"formula":"C10H13N5O4",
"notes":{
"original_bigg_ids":[
"adn_p"
]
},
"annotation":{
"bigg.metabolite":[
"adn"
],
"biocyc":[
"META:ADENOSINE"
],
"chebi":[
"CHEBI:22237",
"CHEBI:13734",
"CHEBI:40558",
"CHEBI:16335",
"CHEBI:40906",
"CHEBI:40911",
"CHEBI:40825",
"CHEBI:2472"
],
"hmdb":[
"HMDB04402",
"HMDB00050",
"HMDB04421",
"HMDB04401"
],
"inchi_key":[
"OIRDTQYFTABQOQ-KQYNXXCUSA-N"
],
"kegg.compound":[
"C00212"
],
"kegg.drug":[
"D00045"
],
"metanetx.chemical":[
"MNXM212"
],
"reactome.compound":[
"83908",
"83909",
"8857850"
],
"sabiork":[
"1402"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00182"
]
}
},
{
"id":"gsn_p",
"name":"Guanosine",
"compartment":"p",
"charge":0,
"formula":"C10H13N5O5",
"notes":{
"original_bigg_ids":[
"gsn_p"
]
},
"annotation":{
"bigg.metabolite":[
"gsn"
],
"biocyc":[
"META:GUANOSINE"
],
"chebi":[
"CHEBI:14375",
"CHEBI:16750",
"CHEBI:42853",
"CHEBI:24444",
"CHEBI:42847",
"CHEBI:471737",
"CHEBI:42840",
"CHEBI:5564"
],
"hmdb":[
"HMDB00133"
],
"inchi_key":[
"NYHBQMYGNKIUIF-UUOKFMHZSA-N"
],
"kegg.compound":[
"C00387"
],
"metanetx.chemical":[
"MNXM401"
],
"sabiork":[
"1872"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00311"
]
}
},
{
"id":"3odecACP_c",
"name":"3-Oxodecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C394H619O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3odecACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3odecACP"
],
"biocyc":[
"META:3-oxo-decanoyl-ACPs"
],
"chebi":[
"CHEBI:1634"
],
"kegg.compound":[
"C05753"
],
"lipidmaps":[
"LMFA07060011"
],
"metanetx.chemical":[
"MNXM26616"
],
"sabiork":[
"8113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11487"
]
}
},
{
"id":"2tdecg3p_c",
"name":"2-tetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C17H34O7P1",
"notes":{
"original_bigg_ids":[
"2tdecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2tdecg3p"
],
"metanetx.chemical":[
"MNXM5491"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15363"
]
}
},
{
"id":"3oddecACP_c",
"name":"3-Oxododecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C396H623O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3oddecACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3oddecACP"
],
"biocyc":[
"META:3-oxo-dodecanoyl-ACPs"
],
"chebi":[
"CHEBI:1637"
],
"kegg.compound":[
"C05756"
],
"lipidmaps":[
"LMFA07060014"
],
"metanetx.chemical":[
"MNXM28933"
],
"sabiork":[
"8116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11489"
]
}
},
{
"id":"2tdec7eg3p_c",
"name":"2-tetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C17H32O7P1",
"notes":{
"original_bigg_ids":[
"2tdec7eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2tdec7eg3p"
],
"metanetx.chemical":[
"MNXM5490"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15362"
]
}
},
{
"id":"3ocddec5eACP_c",
"name":"3-oxo-cis-dodec-5-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C396H621O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3ocddec5eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ocddec5eACP"
],
"metanetx.chemical":[
"MNXM6837"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15373"
]
}
},
{
"id":"12dgr120_c",
"name":"1,2-Diacyl-sn-glycerol (didodecanoyl, n-C12:0)",
"compartment":"c",
"charge":0,
"formula":"C27H52O5",
"notes":{
"original_bigg_ids":[
"12dgr120_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr120"
],
"metanetx.chemical":[
"MNXM4939"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3omrsACP_c",
"name":"3-Oxotetradecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C398H627O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3omrsACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3omrsACP"
],
"biocyc":[
"META:3-oxo-myristoyl-ACPs"
],
"chebi":[
"CHEBI:1655"
],
"kegg.compound":[
"C05759"
],
"lipidmaps":[
"LMFA07060017"
],
"metanetx.chemical":[
"MNXM26095"
],
"sabiork":[
"8119"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11491"
]
}
},
{
"id":"2tdec7eg3p_p",
"name":"2-tetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-1,
"formula":"C17H32O7P1",
"notes":{
"original_bigg_ids":[
"2tdec7eg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"2tdec7eg3p"
],
"metanetx.chemical":[
"MNXM5490"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15362"
]
}
},
{
"id":"3ocmrs7eACP_c",
"name":"3-oxo-cis-myristol-7-eoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C398H625O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3ocmrs7eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ocmrs7eACP"
],
"metanetx.chemical":[
"MNXM6838"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15374"
]
}
},
{
"id":"2hdecg3p_p",
"name":"2-hexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-1,
"formula":"C19H38O7P1",
"notes":{
"original_bigg_ids":[
"2hdecg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"2hdecg3p"
],
"biocyc":[
"META:CPD-17276"
],
"hmdb":[
"HMDB07849"
],
"lipidmaps":[
"LMGP10050042"
],
"metanetx.chemical":[
"MNXM5465"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15355"
],
"slm":[
"000043273"
]
}
},
{
"id":"3opalmACP_c",
"name":"3-Oxohexadecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C400H631O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3opalmACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3opalmACP"
],
"biocyc":[
"META:3-oxo-palmitoyl-ACPs"
],
"chebi":[
"CHEBI:1639"
],
"kegg.compound":[
"C05762"
],
"lipidmaps":[
"LMFA07060019"
],
"metanetx.chemical":[
"MNXM4345"
],
"sabiork":[
"8122"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11485"
]
}
},
{
"id":"2hdecg3p_c",
"name":"2-hexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C19H38O7P1",
"notes":{
"original_bigg_ids":[
"2hdecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2hdecg3p"
],
"biocyc":[
"META:CPD-17276"
],
"hmdb":[
"HMDB07849"
],
"lipidmaps":[
"LMGP10050042"
],
"metanetx.chemical":[
"MNXM5465"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15355"
],
"slm":[
"000043273"
]
}
},
{
"id":"3ocpalm9eACP_c",
"name":"3-oxo-cis-palm-9-eoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C400H629O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3ocpalm9eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ocpalm9eACP"
],
"metanetx.chemical":[
"MNXM6839"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15375"
]
}
},
{
"id":"2hdec9eg3p_p",
"name":"2-hexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-1,
"formula":"C19H36O7P1",
"notes":{
"original_bigg_ids":[
"2hdec9eg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"2hdec9eg3p"
],
"metanetx.chemical":[
"MNXM5464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15354"
]
}
},
{
"id":"3ooctdACP_c",
"name":"3-Oxooctadecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C402H635O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3ooctdACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ooctdACP"
],
"metanetx.chemical":[
"MNXM3491"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15377"
]
}
},
{
"id":"2hdec9eg3p_c",
"name":"2-hexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C19H36O7P1",
"notes":{
"original_bigg_ids":[
"2hdec9eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2hdec9eg3p"
],
"metanetx.chemical":[
"MNXM5464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15354"
]
}
},
{
"id":"3ocvac11eACP_c",
"name":"3-oxo-cis-vacc-11-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C402H633O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3ocvac11eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ocvac11eACP"
],
"metanetx.chemical":[
"MNXM6840"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15376"
]
}
},
{
"id":"2odecg3p_c",
"name":"2-octadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C21H42O7P1",
"notes":{
"original_bigg_ids":[
"2odecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2odecg3p"
],
"biocyc":[
"META:CPD-17274"
],
"hmdb":[
"HMDB07850"
],
"lipidmaps":[
"LMGP10050043"
],
"metanetx.chemical":[
"MNXM5481"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15358"
],
"slm":[
"000043277"
]
}
},
{
"id":"actACP_c",
"name":"Acetoacetyl-ACP",
"compartment":"c",
"charge":-1,
"formula":"C388H607O144N96P1S3",
"notes":{
"original_bigg_ids":[
"actACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"actACP"
],
"biocyc":[
"META:Acetoacetyl-ACPs",
"META:Acetoacetyl-ACP"
],
"chebi":[
"CHEBI:2393"
],
"kegg.compound":[
"C05744"
],
"metanetx.chemical":[
"MNXM1223"
],
"sabiork":[
"8104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11488"
]
}
},
{
"id":"2odecg3p_p",
"name":"2-octadecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-1,
"formula":"C21H42O7P1",
"notes":{
"original_bigg_ids":[
"2odecg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"2odecg3p"
],
"biocyc":[
"META:CPD-17274"
],
"hmdb":[
"HMDB07850"
],
"lipidmaps":[
"LMGP10050043"
],
"metanetx.chemical":[
"MNXM5481"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15358"
],
"slm":[
"000043277"
]
}
},
{
"id":"2odec11eg3p_c",
"name":"2-octadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C21H40O7P1",
"notes":{
"original_bigg_ids":[
"2odec11eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2odec11eg3p"
],
"metanetx.chemical":[
"MNXM5480"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15357"
]
}
},
{
"id":"3ohexACP_c",
"name":"3-Oxohexanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C390H611O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3ohexACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ohexACP"
],
"biocyc":[
"META:3-oxo-hexanoyl-ACPs"
],
"chebi":[
"CHEBI:1642"
],
"kegg.compound":[
"C05746"
],
"lipidmaps":[
"LMFA07060005"
],
"metanetx.chemical":[
"MNXM25602"
],
"sabiork":[
"8106"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11486"
]
}
},
{
"id":"2odec11eg3p_p",
"name":"2-octadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-1,
"formula":"C21H40O7P1",
"notes":{
"original_bigg_ids":[
"2odec11eg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"2odec11eg3p"
],
"metanetx.chemical":[
"MNXM5480"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15357"
]
}
},
{
"id":"12dgr120_p",
"name":"1,2-Diacyl-sn-glycerol (didodecanoyl, n-C12:0)",
"compartment":"p",
"charge":0,
"formula":"C27H52O5",
"notes":{
"original_bigg_ids":[
"12dgr120_p"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr120"
],
"metanetx.chemical":[
"MNXM4939"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3ooctACP_c",
"name":"3-Oxooctanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C392H615O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3ooctACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ooctACP"
],
"biocyc":[
"META:3-Oxo-octanoyl-ACPs"
],
"chebi":[
"CHEBI:1646"
],
"kegg.compound":[
"C05750"
],
"lipidmaps":[
"LMFA07060008"
],
"metanetx.chemical":[
"MNXM28031"
],
"sabiork":[
"8110"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11490"
]
}
},
{
"id":"12dgr140_p",
"name":"1,2-Diacyl-sn-glycerol (ditetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":0,
"formula":"C31H60O5",
"notes":{
"original_bigg_ids":[
"12dgr140_p"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr140"
],
"metanetx.chemical":[
"MNXM146479"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ACP_c",
"name":"Acyl carrier protein",
"compartment":"c",
"charge":-1,
"formula":"C384H603N96O142P1S3",
"notes":{
"original_bigg_ids":[
"ACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ACP"
],
"biocyc":[
"META:ACP"
],
"chebi":[
"CHEBI:14405",
"CHEBI:18359",
"CHEBI:2458"
],
"kegg.compound":[
"C00229"
],
"metanetx.chemical":[
"MNXM925"
],
"sabiork":[
"2186"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11493"
]
}
},
{
"id":"12dgr140_c",
"name":"1,2-Diacyl-sn-glycerol (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"charge":0,
"formula":"C31H60O5",
"notes":{
"original_bigg_ids":[
"12dgr140_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr140"
],
"metanetx.chemical":[
"MNXM146479"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe120_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)",
"compartment":"c",
"charge":0,
"formula":"C17H36NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe120_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe120"
],
"biocyc":[
"META:CPD0-2178"
],
"inchi_key":[
"NPAZKTOOMVQLIH-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM34808"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26439"
],
"slm":[
"000043349"
]
}
},
{
"id":"ocACP_c",
"name":"Octanoyl-ACP (n-C8:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C392H617O143N96P1S3",
"notes":{
"original_bigg_ids":[
"ocACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocACP"
],
"metanetx.chemical":[
"MNXM90185"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe120_p",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)",
"compartment":"p",
"charge":0,
"formula":"C17H36NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe120_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe120"
],
"biocyc":[
"META:CPD0-2178"
],
"inchi_key":[
"NPAZKTOOMVQLIH-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM34808"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26439"
],
"slm":[
"000043349"
]
}
},
{
"id":"2agpe140_p",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)",
"compartment":"p",
"charge":0,
"formula":"C19H40NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe140_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe140"
],
"biocyc":[
"META:CPD0-2165"
],
"hmdb":[
"HMDB11470"
],
"inchi_key":[
"DDUZNLUWXLYPCP-UHFFFAOYSA-N"
],
"lipidmaps":[
"LMGP02050033"
],
"metanetx.chemical":[
"MNXM34809"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26435"
],
"slm":[
"000043363"
]
}
},
{
"id":"12dgr141_p",
"name":"1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":0,
"formula":"C31H56O5",
"notes":{
"original_bigg_ids":[
"12dgr141_p"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr141"
],
"metanetx.chemical":[
"MNXM4940"
],
"sbo":"SBO:0000247"
}
},
{
"id":"malACP_c",
"name":"Malonyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-2,
"formula":"C387H604O145N96P1S3",
"notes":{
"original_bigg_ids":[
"malACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"malACP"
],
"biocyc":[
"META:MALONYL-ACP"
],
"chebi":[
"CHEBI:6662",
"CHEBI:14566",
"CHEBI:17330"
],
"kegg.compound":[
"C01209"
],
"metanetx.chemical":[
"MNXM184"
],
"sabiork":[
"5446"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11492"
]
}
},
{
"id":"12dgr141_c",
"name":"1,2-Diacyl-sn-glycerol (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"charge":0,
"formula":"C31H56O5",
"notes":{
"original_bigg_ids":[
"12dgr141_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr141"
],
"metanetx.chemical":[
"MNXM4940"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr160_c",
"name":"1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"charge":0,
"formula":"C35H68O5",
"notes":{
"original_bigg_ids":[
"12dgr160_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr160"
],
"metanetx.chemical":[
"MNXM3132"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr160_p",
"name":"1,2-Diacyl-sn-glycerol (dihexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":0,
"formula":"C35H68O5",
"notes":{
"original_bigg_ids":[
"12dgr160_p"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr160"
],
"metanetx.chemical":[
"MNXM3132"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe140_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)",
"compartment":"c",
"charge":0,
"formula":"C19H40NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe140_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe140"
],
"biocyc":[
"META:CPD0-2165"
],
"hmdb":[
"HMDB11470"
],
"inchi_key":[
"DDUZNLUWXLYPCP-UHFFFAOYSA-N"
],
"lipidmaps":[
"LMGP02050033"
],
"metanetx.chemical":[
"MNXM34809"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26435"
],
"slm":[
"000043363"
]
}
},
{
"id":"2agpe141_p",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)",
"compartment":"p",
"charge":0,
"formula":"C19H38NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe141_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe141"
],
"metanetx.chemical":[
"MNXM3447"
],
"sbo":"SBO:0000247"
}
},
{
"id":"co2_c",
"name":"CO2 CO2",
"compartment":"c",
"charge":0,
"formula":"CO2",
"notes":{
"original_bigg_ids":[
"co2_c"
]
},
"annotation":{
"bigg.metabolite":[
"co2"
],
"biocyc":[
"META:CARBON-DIOXIDE"
],
"chebi":[
"CHEBI:23011",
"CHEBI:3283",
"CHEBI:48829",
"CHEBI:16526",
"CHEBI:13283",
"CHEBI:13285",
"CHEBI:13284",
"CHEBI:13282"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2ec3da94-5f50-4525-81b1-5607c5c7a3d3",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379"
],
"hmdb":[
"HMDB01967"
],
"inchi_key":[
"CURLTUGMZLYLDI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00011"
],
"kegg.drug":[
"D00004"
],
"metanetx.chemical":[
"MNXM13"
],
"reactome.compound":[
"29376",
"5668565",
"189480",
"1132345",
"113528",
"1237009",
"159751",
"389536",
"159942"
],
"sabiork":[
"1266"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00011"
]
}
},
{
"id":"2agpe141_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)",
"compartment":"c",
"charge":0,
"formula":"C19H38NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe141_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe141"
],
"metanetx.chemical":[
"MNXM3447"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe160_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)",
"compartment":"c",
"charge":0,
"formula":"C21H44NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe160_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe160"
],
"biocyc":[
"META:CPD0-2177"
],
"chebi":[
"CHEBI:131743",
"CHEBI:132926"
],
"hmdb":[
"HMDB11473"
],
"inchi_key":[
"CKPBBEOJHAPPBT-HXUWFJFHSA-N"
],
"lipidmaps":[
"LMGP02050036"
],
"metanetx.chemical":[
"MNXM34810"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15339",
"cpd26438"
],
"slm":[
"000043354"
]
}
},
{
"id":"12dgr161_c",
"name":"1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1)",
"compartment":"c",
"charge":0,
"formula":"C35H64O5",
"notes":{
"original_bigg_ids":[
"12dgr161_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr161"
],
"metanetx.chemical":[
"MNXM3774"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dcaACP_c",
"name":"Decanoyl-ACP (n-C10:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C394H621O143N96P1S3",
"notes":{
"original_bigg_ids":[
"dcaACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcaACP"
],
"metanetx.chemical":[
"MNXM90236"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr161_p",
"name":"1,2-Diacyl-sn-glycerol (dihexadec-9-enoyl, n-C16:1)",
"compartment":"p",
"charge":0,
"formula":"C35H64O5",
"notes":{
"original_bigg_ids":[
"12dgr161_p"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr161"
],
"metanetx.chemical":[
"MNXM3774"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr180_p",
"name":"1,2-Diacyl-sn-glycerol (dioctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":0,
"formula":"C39H76O5",
"notes":{
"original_bigg_ids":[
"12dgr180_p"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr180"
],
"metanetx.chemical":[
"MNXM4217"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe160_p",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)",
"compartment":"p",
"charge":0,
"formula":"C21H44NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe160_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe160"
],
"biocyc":[
"META:CPD0-2177"
],
"chebi":[
"CHEBI:131743",
"CHEBI:132926"
],
"hmdb":[
"HMDB11473"
],
"inchi_key":[
"CKPBBEOJHAPPBT-HXUWFJFHSA-N"
],
"lipidmaps":[
"LMGP02050036"
],
"metanetx.chemical":[
"MNXM34810"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15339",
"cpd26438"
],
"slm":[
"000043354"
]
}
},
{
"id":"cdec3eACP_c",
"name":"Cis-dec-3-enoyl-[acyl-carrier protein] (n-C10:1)",
"compartment":"c",
"charge":-1,
"formula":"C394H619O143N96P1S3",
"notes":{
"original_bigg_ids":[
"cdec3eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdec3eACP"
],
"metanetx.chemical":[
"MNXM7186"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe161_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)",
"compartment":"c",
"charge":0,
"formula":"C21H42NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe161_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe161"
],
"metanetx.chemical":[
"MNXM3448"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe161_p",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)",
"compartment":"p",
"charge":0,
"formula":"C21H42NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe161_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe161"
],
"metanetx.chemical":[
"MNXM3448"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr180_c",
"name":"1,2-Diacyl-sn-glycerol (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"charge":0,
"formula":"C39H76O5",
"notes":{
"original_bigg_ids":[
"12dgr180_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr180"
],
"metanetx.chemical":[
"MNXM4217"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ddcaACP_c",
"name":"Dodecanoyl-ACP (n-C12:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C396H625O143N96P1S3",
"notes":{
"original_bigg_ids":[
"ddcaACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ddcaACP"
],
"metanetx.chemical":[
"MNXM89851"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr181_p",
"name":"1,2-Diacyl-sn-glycerol (dioctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":0,
"formula":"C39H72O5",
"notes":{
"original_bigg_ids":[
"12dgr181_p"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr181"
],
"metanetx.chemical":[
"MNXM3775"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe180_p",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)",
"compartment":"p",
"charge":0,
"formula":"C23H48NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe180_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe180"
],
"biocyc":[
"META:CPD0-2223"
],
"chebi":[
"CHEBI:133144",
"CHEBI:133145"
],
"hmdb":[
"HMDB11129"
],
"inchi_key":[
"KIHAGWUUUHJRMS-JOCHJYFZSA-N"
],
"lipidmaps":[
"LMGP02050038"
],
"metanetx.chemical":[
"MNXM34811"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15341",
"cpd26450"
],
"slm":[
"000043358"
]
}
},
{
"id":"cddec5eACP_c",
"name":"Cis-dodec-5-enoyl-[acyl-carrier protein] (n-C12:1)",
"compartment":"c",
"charge":-1,
"formula":"C396H623O143N96P1S3",
"notes":{
"original_bigg_ids":[
"cddec5eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"cddec5eACP"
],
"metanetx.chemical":[
"MNXM163784"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe180_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)",
"compartment":"c",
"charge":0,
"formula":"C23H48NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe180_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe180"
],
"biocyc":[
"META:CPD0-2223"
],
"chebi":[
"CHEBI:133144",
"CHEBI:133145"
],
"hmdb":[
"HMDB11129"
],
"inchi_key":[
"KIHAGWUUUHJRMS-JOCHJYFZSA-N"
],
"lipidmaps":[
"LMGP02050038"
],
"metanetx.chemical":[
"MNXM34811"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15341",
"cpd26450"
],
"slm":[
"000043358"
]
}
},
{
"id":"12dgr181_c",
"name":"1,2-Diacyl-sn-glycerol (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"charge":0,
"formula":"C39H72O5",
"notes":{
"original_bigg_ids":[
"12dgr181_c"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr181"
],
"metanetx.chemical":[
"MNXM3775"
],
"sbo":"SBO:0000247"
}
},
{
"id":"myrsACP_c",
"name":"Myristoyl-ACP (n-C14:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C398H629O143N96P1S3",
"notes":{
"original_bigg_ids":[
"myrsACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"myrsACP"
],
"metanetx.chemical":[
"MNXM89779"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe181_p",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)",
"compartment":"p",
"charge":0,
"formula":"C23H46NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe181_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe181"
],
"metanetx.chemical":[
"MNXM3449"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tdeACP_c",
"name":"Cis-tetradec-7-enoyl-[acyl-carrier protein] (n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C398H627O143N96P1S3",
"notes":{
"original_bigg_ids":[
"tdeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tdeACP"
],
"metanetx.chemical":[
"MNXM162426"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpe181_c",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)",
"compartment":"c",
"charge":0,
"formula":"C23H46NO7P1",
"notes":{
"original_bigg_ids":[
"2agpe181_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpe181"
],
"metanetx.chemical":[
"MNXM3449"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ppi_c",
"name":"Diphosphate",
"compartment":"c",
"charge":-3,
"formula":"HO7P2",
"notes":{
"original_bigg_ids":[
"ppi_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppi"
],
"biocyc":[
"META:PYROPHOSPHATE-GROUP",
"META:PPI"
],
"chebi":[
"CHEBI:45212",
"CHEBI:45208",
"CHEBI:8683",
"CHEBI:45067",
"CHEBI:33018",
"CHEBI:29888",
"CHEBI:33017",
"CHEBI:33019",
"CHEBI:42009",
"CHEBI:13420",
"CHEBI:18361"
],
"hmdb":[
"HMDB00250"
],
"inchi_key":[
"XPPKVPWEQAFLFU-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00013"
],
"metanetx.chemical":[
"MNXM11"
],
"reactome.compound":[
"159450",
"113542",
"8878981",
"389593",
"113541",
"8938078",
"111294",
"2046049",
"6806656",
"1132084"
],
"sabiork":[
"1267"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00012",
"cpd27828"
]
}
},
{
"id":"12ppd__R_p",
"name":"(R)-Propane-1,2-diol",
"compartment":"p",
"charge":0,
"formula":"C3H8O2",
"notes":{
"original_bigg_ids":[
"12ppd_R_p"
]
},
"annotation":{
"bigg.metabolite":[
"12ppd__R"
],
"biocyc":[
"META:CPD-8891"
],
"chebi":[
"CHEBI:28972",
"CHEBI:352",
"CHEBI:44863",
"CHEBI:18705"
],
"inchi_key":[
"DNIAPMSPPWPWGF-GSVOUGTGSA-N"
],
"kegg.compound":[
"C02912"
],
"metanetx.chemical":[
"MNXM90191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01861"
]
}
},
{
"id":"12ppd__R_e",
"name":"(R)-Propane-1,2-diol",
"compartment":"e",
"charge":0,
"formula":"C3H8O2",
"notes":{
"original_bigg_ids":[
"12ppd_R_e"
]
},
"annotation":{
"bigg.metabolite":[
"12ppd__R"
],
"biocyc":[
"META:CPD-8891"
],
"chebi":[
"CHEBI:28972",
"CHEBI:352",
"CHEBI:44863",
"CHEBI:18705"
],
"inchi_key":[
"DNIAPMSPPWPWGF-GSVOUGTGSA-N"
],
"kegg.compound":[
"C02912"
],
"metanetx.chemical":[
"MNXM90191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01861"
]
}
},
{
"id":"12ppd__R_c",
"name":"(R)-Propane-1,2-diol",
"compartment":"c",
"charge":0,
"formula":"C3H8O2",
"notes":{
"original_bigg_ids":[
"12ppd_R_c"
]
},
"annotation":{
"bigg.metabolite":[
"12ppd__R"
],
"biocyc":[
"META:CPD-8891"
],
"chebi":[
"CHEBI:28972",
"CHEBI:352",
"CHEBI:44863",
"CHEBI:18705"
],
"inchi_key":[
"DNIAPMSPPWPWGF-GSVOUGTGSA-N"
],
"kegg.compound":[
"C02912"
],
"metanetx.chemical":[
"MNXM90191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01861"
]
}
},
{
"id":"palmACP_c",
"name":"Palmitoyl-ACP (n-C16:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C400H633O143N96P1S3",
"notes":{
"original_bigg_ids":[
"palmACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"palmACP"
],
"metanetx.chemical":[
"MNXM2026"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12ppd__S_p",
"name":"(S)-Propane-1,2-diol",
"compartment":"p",
"charge":0,
"formula":"C3H8O2",
"notes":{
"original_bigg_ids":[
"12ppd_S_p"
]
},
"annotation":{
"bigg.metabolite":[
"12ppd__S"
],
"biocyc":[
"META:PROPANE-1-2-DIOL"
],
"chebi":[
"CHEBI:29002",
"CHEBI:18799",
"CHEBI:45065",
"CHEBI:440"
],
"hmdb":[
"HMDB06213"
],
"inchi_key":[
"DNIAPMSPPWPWGF-VKHMYHEASA-N"
],
"kegg.compound":[
"C02917"
],
"metanetx.chemical":[
"MNXM1255"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19024"
]
}
},
{
"id":"12ppd__S_e",
"name":"(S)-Propane-1,2-diol",
"compartment":"e",
"charge":0,
"formula":"C3H8O2",
"notes":{
"original_bigg_ids":[
"12ppd_S_e"
]
},
"annotation":{
"bigg.metabolite":[
"12ppd__S"
],
"biocyc":[
"META:PROPANE-1-2-DIOL"
],
"chebi":[
"CHEBI:29002",
"CHEBI:18799",
"CHEBI:45065",
"CHEBI:440"
],
"hmdb":[
"HMDB06213"
],
"inchi_key":[
"DNIAPMSPPWPWGF-VKHMYHEASA-N"
],
"kegg.compound":[
"C02917"
],
"metanetx.chemical":[
"MNXM1255"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19024"
]
}
},
{
"id":"amp_c",
"name":"AMP C10H12N5O7P",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"amp_c"
]
},
"annotation":{
"bigg.metabolite":[
"amp"
],
"biocyc":[
"META:AMP-GROUP",
"META:AMP"
],
"chebi":[
"CHEBI:13736",
"CHEBI:2356",
"CHEBI:13234",
"CHEBI:22242",
"CHEBI:40786",
"CHEBI:16027",
"CHEBI:40721",
"CHEBI:40510",
"CHEBI:456215",
"CHEBI:13235",
"CHEBI:22245",
"CHEBI:40726",
"CHEBI:47222",
"CHEBI:13740",
"CHEBI:40826",
"CHEBI:12056"
],
"hmdb":[
"HMDB00045"
],
"inchi_key":[
"UDMBCSSLTHHNCD-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00020"
],
"kegg.drug":[
"D02769"
],
"metanetx.chemical":[
"MNXM14"
],
"reactome.compound":[
"389620",
"159448",
"76577",
"109275",
"164121"
],
"sabiork":[
"1273"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22272",
"cpd00018"
]
}
},
{
"id":"hdeACP_c",
"name":"Cis-hexadec-9-enoyl-[acyl-carrier protein] (n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C400H631O143N96P1S3",
"notes":{
"original_bigg_ids":[
"hdeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdeACP"
],
"metanetx.chemical":[
"MNXM89949"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12ppd__S_c",
"name":"(S)-Propane-1,2-diol",
"compartment":"c",
"charge":0,
"formula":"C3H8O2",
"notes":{
"original_bigg_ids":[
"12ppd_S_c"
]
},
"annotation":{
"bigg.metabolite":[
"12ppd__S"
],
"biocyc":[
"META:PROPANE-1-2-DIOL"
],
"chebi":[
"CHEBI:29002",
"CHEBI:18799",
"CHEBI:45065",
"CHEBI:440"
],
"hmdb":[
"HMDB06213"
],
"inchi_key":[
"DNIAPMSPPWPWGF-VKHMYHEASA-N"
],
"kegg.compound":[
"C02917"
],
"metanetx.chemical":[
"MNXM1255"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19024"
]
}
},
{
"id":"butACP_c",
"name":"Butyryl-ACP (n-C4:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C388H609O143N96P1S3",
"notes":{
"original_bigg_ids":[
"butACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"butACP"
],
"metanetx.chemical":[
"MNXM90458"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hexACP_c",
"name":"Hexanoyl-ACP (n-C6:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C390H613O143N96P1S3",
"notes":{
"original_bigg_ids":[
"hexACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"hexACP"
],
"metanetx.chemical":[
"MNXM90722"
],
"sbo":"SBO:0000247"
}
},
{
"id":"adp_c",
"name":"ADP C10H12N5O10P2",
"compartment":"c",
"charge":-3,
"formula":"C10H12N5O10P2",
"notes":{
"original_bigg_ids":[
"adp_c"
]
},
"annotation":{
"bigg.metabolite":[
"adp"
],
"biocyc":[
"META:ADP"
],
"chebi":[
"CHEBI:2342",
"CHEBI:16761",
"CHEBI:456216",
"CHEBI:40553",
"CHEBI:22244",
"CHEBI:87518",
"CHEBI:13222"
],
"hmdb":[
"HMDB01341"
],
"inchi_key":[
"XTWYTFMLZFPYCI-KQYNXXCUSA-K"
],
"kegg.compound":[
"C00008"
],
"kegg.glycan":[
"G11113"
],
"metanetx.chemical":[
"MNXM7"
],
"reactome.compound":[
"114565",
"211606",
"114564",
"6798177",
"5632457",
"5696026",
"8869360",
"29370",
"113581",
"113582"
],
"sabiork":[
"35"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00008"
]
}
},
{
"id":"ddca_c",
"name":"Dodecanoate (n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C12H23O2",
"notes":{
"original_bigg_ids":[
"ddca_c"
]
},
"annotation":{
"bigg.metabolite":[
"ddca"
],
"metanetx.chemical":[
"MNXM162258"
],
"sbo":"SBO:0000247"
}
},
{
"id":"LalaDgluMdap_c",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate",
"compartment":"c",
"charge":-1,
"formula":"C15H25N4O8",
"notes":{
"original_bigg_ids":[
"LalaDgluMdap_c"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdap"
],
"metanetx.chemical":[
"MNXM90242"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15386"
]
}
},
{
"id":"pe120_c",
"name":"Phosphatidylethanolamine (didodecanoyl, n-C12:0)",
"compartment":"c",
"charge":0,
"formula":"C29H58N1O8P1",
"notes":{
"original_bigg_ids":[
"pe120_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe120"
],
"biocyc":[
"META:CPD-17088"
],
"lipidmaps":[
"LMGP02010098"
],
"metanetx.chemical":[
"MNXM2858"
],
"sbo":"SBO:0000247",
"slm":[
"000034904"
]
}
},
{
"id":"14glucan_c",
"name":"1,4-alpha-D-glucan",
"compartment":"c",
"charge":0,
"formula":"C36H62O31",
"notes":{
"original_bigg_ids":[
"14glucan_c"
]
},
"annotation":{
"bigg.metabolite":[
"14glucan"
],
"biocyc":[
"META:1-4-alpha-D-Glucan"
],
"metanetx.chemical":[
"MNXM2905"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21754"
]
}
},
{
"id":"LalaDgluMdap_p",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate",
"compartment":"p",
"charge":-1,
"formula":"C15H25N4O8",
"notes":{
"original_bigg_ids":[
"LalaDgluMdap_p"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdap"
],
"metanetx.chemical":[
"MNXM90242"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15386"
]
}
},
{
"id":"pe140_c",
"name":"Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"charge":0,
"formula":"C33H66N1O8P1",
"notes":{
"original_bigg_ids":[
"pe140_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe140"
],
"biocyc":[
"META:CPD-17087"
],
"hmdb":[
"HMDB08821",
"HMDB05313"
],
"lipidmaps":[
"LMGP02010352"
],
"metanetx.chemical":[
"MNXM2859"
],
"sbo":"SBO:0000247",
"slm":[
"000034918"
]
}
},
{
"id":"LalaDgluMdap_e",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate",
"compartment":"e",
"charge":-1,
"formula":"C15H25N4O8",
"notes":{
"original_bigg_ids":[
"LalaDgluMdap_e"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdap"
],
"metanetx.chemical":[
"MNXM90242"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15386"
]
}
},
{
"id":"pi_c",
"name":"Phosphate",
"compartment":"c",
"charge":-2,
"formula":"HO4P",
"notes":{
"original_bigg_ids":[
"pi_c"
]
},
"annotation":{
"bigg.metabolite":[
"pi"
],
"biocyc":[
"META:Pi",
"META:CPD-16459",
"META:PHOSPHATE-GROUP"
],
"chebi":[
"CHEBI:26078",
"CHEBI:18367",
"CHEBI:29139",
"CHEBI:39739",
"CHEBI:43470",
"CHEBI:35780",
"CHEBI:43474",
"CHEBI:26020",
"CHEBI:45024",
"CHEBI:39745",
"CHEBI:29137",
"CHEBI:14791",
"CHEBI:7793"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/db5219ee-60cb-4370-b066-340c9faf069c",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/84684967-eade-48d4-b25d-c4aede0a0836",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/ad82c39b-2edb-4953-b971-79a2d2ea6e26",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/aac01fea-4223-49c1-8b12-cd50f11ebfc8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c581b2ce-6238-45de-abc0-60ca8d47ed04"
],
"hmdb":[
"HMDB02105",
"HMDB00973",
"HMDB01429",
"HMDB02142",
"HMDB05947"
],
"inchi_key":[
"NBIIXXVUZAFLBC-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00009"
],
"kegg.drug":[
"D05467"
],
"metanetx.chemical":[
"MNXM9"
],
"reactome.compound":[
"5228339",
"113550",
"8851513",
"113551",
"109277",
"29372",
"8851226",
"113548"
],
"sabiork":[
"36"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27787",
"cpd00009"
]
}
},
{
"id":"3ump_e",
"name":"3  UMP C9H11N2O9P",
"compartment":"e",
"charge":-2,
"formula":"C9H11N2O9P",
"notes":{
"original_bigg_ids":[
"3ump_e"
]
},
"annotation":{
"bigg.metabolite":[
"3ump"
],
"biocyc":[
"META:CPD-3724"
],
"chebi":[
"CHEBI:1361",
"CHEBI:28895",
"CHEBI:27229",
"CHEBI:556513",
"CHEBI:60784",
"CHEBI:46259"
],
"hmdb":[
"HMDB60282"
],
"inchi_key":[
"FOGRQMPFHUHIGU-XVFCMESISA-L"
],
"kegg.compound":[
"C01368"
],
"metanetx.chemical":[
"MNXM2184"
],
"sabiork":[
"1716"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00989"
]
}
},
{
"id":"ttdca_c",
"name":"Tetradecanoate (n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C14H27O2",
"notes":{
"original_bigg_ids":[
"ttdca_c"
]
},
"annotation":{
"bigg.metabolite":[
"ttdca"
],
"metanetx.chemical":[
"MNXM162239"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4hoxpacd_e",
"name":"4-Hydroxyphenylacetaldehyde",
"compartment":"e",
"charge":0,
"formula":"C8H8O2",
"notes":{
"original_bigg_ids":[
"4hoxpacd_e"
]
},
"annotation":{
"bigg.metabolite":[
"4hoxpacd"
],
"biocyc":[
"META:HYDRPHENYLAC-CPD"
],
"chebi":[
"CHEBI:10899",
"CHEBI:15621",
"CHEBI:20417",
"CHEBI:1872",
"CHEBI:12012"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/64f3ce8a-986e-4632-b8ba-601157cdee93",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8613d957-a29b-4d3e-b6b0-daaaecd2fc96"
],
"hmdb":[
"HMDB03767"
],
"inchi_key":[
"IPRPPFIAVHPVJH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C03765"
],
"metanetx.chemical":[
"MNXM479"
],
"reactome.compound":[
"5696178",
"500608"
],
"sabiork":[
"6840"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02361"
]
}
},
{
"id":"pe141_c",
"name":"Phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"charge":0,
"formula":"C33H62N1O8P1",
"notes":{
"original_bigg_ids":[
"pe141_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe141"
],
"metanetx.chemical":[
"MNXM3693"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ttdcea_c",
"name":"Tetradecenoate (n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C14H25O2",
"notes":{
"original_bigg_ids":[
"ttdcea_c"
]
},
"annotation":{
"bigg.metabolite":[
"ttdcea"
],
"metanetx.chemical":[
"MNXM641"
],
"sbo":"SBO:0000247"
}
},
{
"id":"h2o_c",
"name":"H2O H2O",
"compartment":"c",
"charge":0,
"formula":"H2O",
"notes":{
"original_bigg_ids":[
"h2o_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2o"
],
"biocyc":[
"META:CPD-15815",
"META:OXONIUM",
"META:HYDROXYL-GROUP",
"META:WATER",
"META:OH"
],
"chebi":[
"CHEBI:13352",
"CHEBI:30490",
"CHEBI:43228",
"CHEBI:33813",
"CHEBI:44292",
"CHEBI:44641",
"CHEBI:27313",
"CHEBI:42043",
"CHEBI:44819",
"CHEBI:29356",
"CHEBI:5594",
"CHEBI:10743",
"CHEBI:15377",
"CHEBI:42857",
"CHEBI:13365",
"CHEBI:29412",
"CHEBI:16234",
"CHEBI:13419",
"CHEBI:5585",
"CHEBI:44701"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/799908db-b8c9-4982-86cb-1f225e2ad08c",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e7f34a8e-cded-4793-b6d5-792335b38636",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/969d0227-3069-4e44-9525-7ae7bad84170"
],
"hmdb":[
"HMDB02111",
"HMDB01039"
],
"inchi_key":[
"XLYOFNOQVPJJNP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00001",
"C01328"
],
"kegg.drug":[
"D00001",
"D06322"
],
"metanetx.chemical":[
"MNXM2"
],
"reactome.compound":[
"113521",
"141343",
"2022884",
"5278291",
"29356",
"189422",
"5668574",
"5693747",
"109276",
"113519",
"1605715",
"8851517",
"113518",
"351603"
],
"sabiork":[
"40"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27222",
"cpd00001",
"cpd15275"
]
}
},
{
"id":"4hoxpacd_p",
"name":"4-Hydroxyphenylacetaldehyde",
"compartment":"p",
"charge":0,
"formula":"C8H8O2",
"notes":{
"original_bigg_ids":[
"4hoxpacd_p"
]
},
"annotation":{
"bigg.metabolite":[
"4hoxpacd"
],
"biocyc":[
"META:HYDRPHENYLAC-CPD"
],
"chebi":[
"CHEBI:10899",
"CHEBI:15621",
"CHEBI:20417",
"CHEBI:1872",
"CHEBI:12012"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/64f3ce8a-986e-4632-b8ba-601157cdee93",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8613d957-a29b-4d3e-b6b0-daaaecd2fc96"
],
"hmdb":[
"HMDB03767"
],
"inchi_key":[
"IPRPPFIAVHPVJH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C03765"
],
"metanetx.chemical":[
"MNXM479"
],
"reactome.compound":[
"5696178",
"500608"
],
"sabiork":[
"6840"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02361"
]
}
},
{
"id":"h_c",
"name":"H+",
"compartment":"c",
"charge":1,
"formula":"H",
"notes":{
"original_bigg_ids":[
"h_c"
]
},
"annotation":{
"bigg.metabolite":[
"h"
],
"biocyc":[
"META:PROTON"
],
"chebi":[
"CHEBI:5584",
"CHEBI:13357",
"CHEBI:15378",
"CHEBI:10744"
],
"hmdb":[
"HMDB59597"
],
"inchi_key":[
"GPRLSGONYQIRFK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00080"
],
"metanetx.chemical":[
"MNXM1"
],
"reactome.compound":[
"2000349",
"425978",
"74722",
"428040",
"427899",
"428548",
"156540",
"70106",
"425969",
"1132304",
"5668577",
"1470067",
"163953",
"193465",
"113529",
"351626",
"425999",
"194688",
"374900",
"2872447",
"372511"
],
"sabiork":[
"39"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00067"
]
}
},
{
"id":"4hthr_c",
"name":"4-Hydroxy-L-threonine",
"compartment":"c",
"charge":0,
"formula":"C4H9NO4",
"notes":{
"original_bigg_ids":[
"4hthr_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hthr"
],
"biocyc":[
"META:CPD0-2189"
],
"chebi":[
"CHEBI:60904",
"CHEBI:28330",
"CHEBI:20393",
"CHEBI:1853"
],
"inchi_key":[
"JBNUARFQOCGDRK-GBXIJSLDSA-N"
],
"kegg.compound":[
"C06056"
],
"metanetx.chemical":[
"MNXM1802"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03608"
]
}
},
{
"id":"hdca_c",
"name":"Hexadecanoate (n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C16H31O2",
"notes":{
"original_bigg_ids":[
"hdca_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdca"
],
"biocyc":[
"META:PALMITATE"
],
"chebi":[
"CHEBI:7896",
"CHEBI:24540",
"CHEBI:231736",
"CHEBI:15756",
"CHEBI:44952",
"CHEBI:233028",
"CHEBI:24542",
"CHEBI:14730",
"CHEBI:35978",
"CHEBI:24541",
"CHEBI:24550",
"CHEBI:29889"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc7314a1-8e9a-410f-be4f-f7d8bf32b1cb"
],
"hmdb":[
"HMDB60083",
"HMDB00220"
],
"inchi_key":[
"IPCSVZSSVZVIGE-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00249"
],
"kegg.drug":[
"D05341"
],
"lipidmaps":[
"LMFA01010046",
"LMFA01010001"
],
"metanetx.chemical":[
"MNXM108"
],
"reactome.compound":[
"2453691",
"3632881",
"76168",
"5690516",
"390435",
"426576"
],
"sabiork":[
"1990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00214"
],
"slm":[
"000000510"
]
}
},
{
"id":"phthr_c",
"name":"O-Phospho-4-hydroxy-L-threonine",
"compartment":"c",
"charge":-2,
"formula":"C4H8NO7P",
"notes":{
"original_bigg_ids":[
"phthr_c"
]
},
"annotation":{
"bigg.metabolite":[
"phthr"
],
"biocyc":[
"META:4-PHOSPHONOOXY-THREONINE"
],
"chebi":[
"CHEBI:58452",
"CHEBI:21963",
"CHEBI:18336",
"CHEBI:11945",
"CHEBI:7690",
"CHEBI:59459"
],
"hmdb":[
"HMDB06802"
],
"inchi_key":[
"FKHAKIJOKDGEII-GBXIJSLDSA-L"
],
"kegg.compound":[
"C06055"
],
"metanetx.chemical":[
"MNXM759"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22119",
"cpd03607"
]
}
},
{
"id":"pe160_c",
"name":"Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"charge":0,
"formula":"C37H74N1O8P1",
"notes":{
"original_bigg_ids":[
"pe160_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe160"
],
"biocyc":[
"META:CPD-12819"
],
"chebi":[
"CHEBI:73005",
"CHEBI:73127"
],
"hmdb":[
"HMDB05317",
"HMDB08923"
],
"inchi_key":[
"SLKDGVPOSSLUAI-PGUFJCEWSA-N"
],
"lipidmaps":[
"LMGP02010037"
],
"metanetx.chemical":[
"MNXM32178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15531",
"cpd29054",
"cpd23597"
],
"slm":[
"000034909"
]
}
},
{
"id":"atp_c",
"name":"ATP C10H12N5O13P3",
"compartment":"c",
"charge":-4,
"formula":"C10H12N5O13P3",
"notes":{
"original_bigg_ids":[
"atp_c"
]
},
"annotation":{
"bigg.metabolite":[
"atp"
],
"biocyc":[
"META:ATP"
],
"chebi":[
"CHEBI:15422",
"CHEBI:10789",
"CHEBI:10841",
"CHEBI:2359",
"CHEBI:22249",
"CHEBI:13236",
"CHEBI:237958",
"CHEBI:30616",
"CHEBI:57299",
"CHEBI:40938"
],
"hmdb":[
"HMDB00538"
],
"inchi_key":[
"ZKHQWZAMYRWXGA-KQYNXXCUSA-J"
],
"kegg.compound":[
"C00002"
],
"kegg.drug":[
"D08646"
],
"metanetx.chemical":[
"MNXM3"
],
"reactome.compound":[
"8878982",
"389573",
"8938081",
"211579",
"113593",
"113592",
"5632460",
"5696069",
"29358",
"8869363",
"6798184"
],
"sabiork":[
"34"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00002"
]
}
},
{
"id":"ala__D_c",
"name":"D-Alanine",
"compartment":"c",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"ala__D"
],
"biocyc":[
"META:D-ALANINE"
],
"chebi":[
"CHEBI:12899",
"CHEBI:57416",
"CHEBI:41798",
"CHEBI:10840",
"CHEBI:20893",
"CHEBI:4087",
"CHEBI:32435",
"CHEBI:41848",
"CHEBI:41756",
"CHEBI:41877",
"CHEBI:15570",
"CHEBI:32436"
],
"hmdb":[
"HMDB01310"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-UWTATZPHSA-N"
],
"kegg.compound":[
"C00133"
],
"metanetx.chemical":[
"MNXM156"
],
"sabiork":[
"1940"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00117"
]
}
},
{
"id":"14glucan_p",
"name":"1,4-alpha-D-glucan",
"compartment":"p",
"charge":0,
"formula":"C36H62O31",
"notes":{
"original_bigg_ids":[
"14glucan_p"
]
},
"annotation":{
"bigg.metabolite":[
"14glucan"
],
"biocyc":[
"META:1-4-alpha-D-Glucan"
],
"metanetx.chemical":[
"MNXM2905"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21754"
]
}
},
{
"id":"pe161_c",
"name":"Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)",
"compartment":"c",
"charge":0,
"formula":"C37H70N1O8P1",
"notes":{
"original_bigg_ids":[
"pe161_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe161"
],
"biocyc":[
"META:CPD-17086"
],
"hmdb":[
"HMDB05342",
"HMDB08957"
],
"lipidmaps":[
"LMGP02010108"
],
"metanetx.chemical":[
"MNXM71458"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29055"
],
"slm":[
"000034897"
]
}
},
{
"id":"hdcea_c",
"name":"Hexadecenoate (n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C16H29O2",
"notes":{
"original_bigg_ids":[
"hdcea_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdcea"
],
"metanetx.chemical":[
"MNXM950"
],
"sbo":"SBO:0000247"
}
},
{
"id":"LalaDgluMdapDala_c",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine",
"compartment":"c",
"charge":-1,
"formula":"C18H30N5O9",
"notes":{
"original_bigg_ids":[
"LalaDgluMdapDala_c"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdapDala"
],
"inchi_key":[
"BAPAFFOXTCMVCC-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM59271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15387"
]
}
},
{
"id":"ocdca_c",
"name":"Octadecanoate (n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C18H35O2",
"notes":{
"original_bigg_ids":[
"ocdca_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocdca"
],
"biocyc":[
"META:STEARIC_ACID"
],
"chebi":[
"CHEBI:25631",
"CHEBI:231588",
"CHEBI:45710",
"CHEBI:25629",
"CHEBI:28842"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c0fae385-4844-4700-ba7a-96b6726ed216"
],
"hmdb":[
"HMDB00827"
],
"inchi_key":[
"QIQXTHQIDYTFRH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01530"
],
"kegg.drug":[
"D00119"
],
"lipidmaps":[
"LMFA01010018",
"LMFA01010047"
],
"metanetx.chemical":[
"MNXM236"
],
"reactome.compound":[
"428198"
],
"sabiork":[
"20032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01080"
],
"slm":[
"000000826"
]
}
},
{
"id":"14glucan_e",
"name":"1,4-alpha-D-glucan",
"compartment":"e",
"charge":0,
"formula":"C36H62O31",
"notes":{
"original_bigg_ids":[
"14glucan_e"
]
},
"annotation":{
"bigg.metabolite":[
"14glucan"
],
"biocyc":[
"META:1-4-alpha-D-Glucan"
],
"metanetx.chemical":[
"MNXM2905"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21754"
]
}
},
{
"id":"LalaDgluMdapDala_p",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine",
"compartment":"p",
"charge":-1,
"formula":"C18H30N5O9",
"notes":{
"original_bigg_ids":[
"LalaDgluMdapDala_p"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdapDala"
],
"inchi_key":[
"BAPAFFOXTCMVCC-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM59271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15387"
]
}
},
{
"id":"23camp_e",
"name":"2',3'-Cyclic AMP",
"compartment":"e",
"charge":-1,
"formula":"C10H11N5O6P",
"notes":{
"original_bigg_ids":[
"23camp_e"
]
},
"annotation":{
"bigg.metabolite":[
"23camp"
],
"biocyc":[
"META:CPD-3707"
],
"chebi":[
"CHEBI:823",
"CHEBI:60879",
"CHEBI:19212",
"CHEBI:40469",
"CHEBI:27844"
],
"inchi_key":[
"KMYWVDDIPVNLME-KQYNXXCUSA-M"
],
"kegg.compound":[
"C02353"
],
"metanetx.chemical":[
"MNXM2598"
],
"sabiork":[
"1882"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01570"
]
}
},
{
"id":"pe180_c",
"name":"Phosphatidylethanolamine (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"charge":0,
"formula":"C41H82N1O8P1",
"notes":{
"original_bigg_ids":[
"pe180_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe180"
],
"biocyc":[
"META:CPD-12818"
],
"chebi":[
"CHEBI:47765",
"CHEBI:44886",
"CHEBI:39934",
"CHEBI:47766"
],
"hmdb":[
"HMDB05327",
"HMDB08991"
],
"inchi_key":[
"LVNGJLRDBYCPGB-LDLOPFEMSA-N"
],
"lipidmaps":[
"LMGP02010097"
],
"metanetx.chemical":[
"MNXM31536"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15533",
"cpd23596"
],
"slm":[
"000034913"
]
}
},
{
"id":"ala__D_p",
"name":"D-Alanine",
"compartment":"p",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"ala__D"
],
"biocyc":[
"META:D-ALANINE"
],
"chebi":[
"CHEBI:12899",
"CHEBI:57416",
"CHEBI:41798",
"CHEBI:10840",
"CHEBI:20893",
"CHEBI:4087",
"CHEBI:32435",
"CHEBI:41848",
"CHEBI:41756",
"CHEBI:41877",
"CHEBI:15570",
"CHEBI:32436"
],
"hmdb":[
"HMDB01310"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-UWTATZPHSA-N"
],
"kegg.compound":[
"C00133"
],
"metanetx.chemical":[
"MNXM156"
],
"sabiork":[
"1940"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00117"
]
}
},
{
"id":"ocdcea_c",
"name":"Octadecenoate (n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C18H33O2",
"notes":{
"original_bigg_ids":[
"ocdcea_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcea"
],
"biocyc":[
"META:OLEATE-CPD"
],
"chebi":[
"CHEBI:30823",
"CHEBI:25664",
"CHEBI:16196",
"CHEBI:7741",
"CHEBI:14684",
"CHEBI:104361",
"CHEBI:25663",
"CHEBI:44741"
],
"hmdb":[
"HMDB00207",
"HMDB02066"
],
"inchi_key":[
"ZQPPMHVWECSIRJ-KTKRTIGZSA-M"
],
"kegg.compound":[
"C00712"
],
"kegg.drug":[
"D02315"
],
"lipidmaps":[
"LMFA01030810",
"LMFA01030763",
"LMFA01030002"
],
"metanetx.chemical":[
"MNXM306"
],
"sabiork":[
"2139",
"28897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00536"
],
"slm":[
"000000418"
]
}
},
{
"id":"23camp_p",
"name":"2',3'-Cyclic AMP",
"compartment":"p",
"charge":-1,
"formula":"C10H11N5O6P",
"notes":{
"original_bigg_ids":[
"23camp_p"
]
},
"annotation":{
"bigg.metabolite":[
"23camp"
],
"biocyc":[
"META:CPD-3707"
],
"chebi":[
"CHEBI:823",
"CHEBI:60879",
"CHEBI:19212",
"CHEBI:40469",
"CHEBI:27844"
],
"inchi_key":[
"KMYWVDDIPVNLME-KQYNXXCUSA-M"
],
"kegg.compound":[
"C02353"
],
"metanetx.chemical":[
"MNXM2598"
],
"sabiork":[
"1882"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01570"
]
}
},
{
"id":"LalaDgluMdapDala_e",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine",
"compartment":"e",
"charge":-1,
"formula":"C18H30N5O9",
"notes":{
"original_bigg_ids":[
"LalaDgluMdapDala_e"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDgluMdapDala"
],
"inchi_key":[
"BAPAFFOXTCMVCC-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM59271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15387"
]
}
},
{
"id":"23ccmp_e",
"name":"2',3'-Cyclic CMP",
"compartment":"e",
"charge":-1,
"formula":"C9H11N3O7P",
"notes":{
"original_bigg_ids":[
"23ccmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"23ccmp"
],
"biocyc":[
"META:CPD-3713"
],
"chebi":[
"CHEBI:824",
"CHEBI:60877",
"CHEBI:27652",
"CHEBI:19213"
],
"inchi_key":[
"NMPZCCZXCOMSDQ-XVFCMESISA-M"
],
"kegg.compound":[
"C02354"
],
"metanetx.chemical":[
"MNXM3148"
],
"sabiork":[
"2406"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01571"
]
}
},
{
"id":"pe181_c",
"name":"Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"charge":0,
"formula":"C41H78N1O8P1",
"notes":{
"original_bigg_ids":[
"pe181_c"
]
},
"annotation":{
"bigg.metabolite":[
"pe181"
],
"metanetx.chemical":[
"MNXM2150"
],
"sbo":"SBO:0000247"
}
},
{
"id":"5dglcn_c",
"name":"5-Dehydro-D-gluconate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"5dglcn_c"
]
},
"annotation":{
"bigg.metabolite":[
"5dglcn"
],
"biocyc":[
"META:5-DEHYDROGLUCONATE"
],
"chebi":[
"CHEBI:12121",
"CHEBI:20564",
"CHEBI:2051",
"CHEBI:17426",
"CHEBI:12120",
"CHEBI:58143"
],
"inchi_key":[
"IZSRJDGCGRAUAR-MROZADKFSA-M"
],
"kegg.compound":[
"C01062"
],
"metanetx.chemical":[
"MNXM963"
],
"sabiork":[
"2233"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00781"
]
}
},
{
"id":"2agpg120_p",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)",
"compartment":"p",
"charge":-1,
"formula":"C18H36O9P1",
"notes":{
"original_bigg_ids":[
"2agpg120_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg120"
],
"metanetx.chemical":[
"MNXM3450"
],
"sbo":"SBO:0000247"
}
},
{
"id":"23ccmp_p",
"name":"2',3'-Cyclic CMP",
"compartment":"p",
"charge":-1,
"formula":"C9H11N3O7P",
"notes":{
"original_bigg_ids":[
"23ccmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"23ccmp"
],
"biocyc":[
"META:CPD-3713"
],
"chebi":[
"CHEBI:824",
"CHEBI:60877",
"CHEBI:27652",
"CHEBI:19213"
],
"inchi_key":[
"NMPZCCZXCOMSDQ-XVFCMESISA-M"
],
"kegg.compound":[
"C02354"
],
"metanetx.chemical":[
"MNXM3148"
],
"sabiork":[
"2406"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01571"
]
}
},
{
"id":"23cgmp_p",
"name":"2',3'-Cyclic GMP",
"compartment":"p",
"charge":-1,
"formula":"C10H11N5O7P",
"notes":{
"original_bigg_ids":[
"23cgmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"23cgmp"
],
"biocyc":[
"META:CPD-3709"
],
"chebi":[
"CHEBI:28181",
"CHEBI:19214",
"CHEBI:60837",
"CHEBI:825"
],
"inchi_key":[
"UASRYODFRYWBRC-UUOKFMHZSA-M"
],
"kegg.compound":[
"C06194"
],
"metanetx.chemical":[
"MNXM3149"
],
"sabiork":[
"1900"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03702"
]
}
},
{
"id":"2agpg120_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C18H36O9P1",
"notes":{
"original_bigg_ids":[
"2agpg120_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg120"
],
"metanetx.chemical":[
"MNXM3450"
],
"sbo":"SBO:0000247"
}
},
{
"id":"5dglcn_p",
"name":"5-Dehydro-D-gluconate",
"compartment":"p",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"5dglcn_p"
]
},
"annotation":{
"bigg.metabolite":[
"5dglcn"
],
"biocyc":[
"META:5-DEHYDROGLUCONATE"
],
"chebi":[
"CHEBI:12121",
"CHEBI:20564",
"CHEBI:2051",
"CHEBI:17426",
"CHEBI:12120",
"CHEBI:58143"
],
"inchi_key":[
"IZSRJDGCGRAUAR-MROZADKFSA-M"
],
"kegg.compound":[
"C01062"
],
"metanetx.chemical":[
"MNXM963"
],
"sabiork":[
"2233"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00781"
]
}
},
{
"id":"2agpg140_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C20H40O9P1",
"notes":{
"original_bigg_ids":[
"2agpg140_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg140"
],
"biocyc":[
"META:CPD0-2173"
],
"inchi_key":[
"NHYJQQUDLXESED-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM34739"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26437"
],
"slm":[
"000046424"
]
}
},
{
"id":"23cgmp_e",
"name":"2',3'-Cyclic GMP",
"compartment":"e",
"charge":-1,
"formula":"C10H11N5O7P",
"notes":{
"original_bigg_ids":[
"23cgmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"23cgmp"
],
"biocyc":[
"META:CPD-3709"
],
"chebi":[
"CHEBI:28181",
"CHEBI:19214",
"CHEBI:60837",
"CHEBI:825"
],
"inchi_key":[
"UASRYODFRYWBRC-UUOKFMHZSA-M"
],
"kegg.compound":[
"C06194"
],
"metanetx.chemical":[
"MNXM3149"
],
"sabiork":[
"1900"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03702"
]
}
},
{
"id":"5dglcn_e",
"name":"5-Dehydro-D-gluconate",
"compartment":"e",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"5dglcn_e"
]
},
"annotation":{
"bigg.metabolite":[
"5dglcn"
],
"biocyc":[
"META:5-DEHYDROGLUCONATE"
],
"chebi":[
"CHEBI:12121",
"CHEBI:20564",
"CHEBI:2051",
"CHEBI:17426",
"CHEBI:12120",
"CHEBI:58143"
],
"inchi_key":[
"IZSRJDGCGRAUAR-MROZADKFSA-M"
],
"kegg.compound":[
"C01062"
],
"metanetx.chemical":[
"MNXM963"
],
"sabiork":[
"2233"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00781"
]
}
},
{
"id":"23cump_p",
"name":"2',3'-Cyclic UMP",
"compartment":"p",
"charge":-1,
"formula":"C9H10N2O8P",
"notes":{
"original_bigg_ids":[
"23cump_p"
]
},
"annotation":{
"bigg.metabolite":[
"23cump"
],
"biocyc":[
"META:CPD-3725"
],
"chebi":[
"CHEBI:28637",
"CHEBI:826",
"CHEBI:60873",
"CHEBI:19215"
],
"hmdb":[
"HMDB11640"
],
"inchi_key":[
"HWDMHJDYMFRXOX-XVFCMESISA-M"
],
"kegg.compound":[
"C02355"
],
"metanetx.chemical":[
"MNXM3150"
],
"sabiork":[
"2407"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01572"
]
}
},
{
"id":"2agpg140_p",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)",
"compartment":"p",
"charge":-1,
"formula":"C20H40O9P1",
"notes":{
"original_bigg_ids":[
"2agpg140_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg140"
],
"biocyc":[
"META:CPD0-2173"
],
"inchi_key":[
"NHYJQQUDLXESED-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM34739"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26437"
],
"slm":[
"000046424"
]
}
},
{
"id":"5drib_c",
"name":"5'-deoxyribose",
"compartment":"c",
"charge":0,
"formula":"C5H10O4",
"notes":{
"original_bigg_ids":[
"5drib_c"
]
},
"annotation":{
"bigg.metabolite":[
"5drib"
],
"biocyc":[
"META:CPD0-2167"
],
"chebi":[
"CHEBI:62012"
],
"inchi_key":[
"WDRISBUVHBMJEF-MROZADKFSA-N"
],
"metanetx.chemical":[
"MNXM4391"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd17002",
"cpd15380"
]
}
},
{
"id":"2agpg141_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C20H38O9P1",
"notes":{
"original_bigg_ids":[
"2agpg141_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg141"
],
"metanetx.chemical":[
"MNXM3452"
],
"sbo":"SBO:0000247"
}
},
{
"id":"23cump_e",
"name":"2',3'-Cyclic UMP",
"compartment":"e",
"charge":-1,
"formula":"C9H10N2O8P",
"notes":{
"original_bigg_ids":[
"23cump_e"
]
},
"annotation":{
"bigg.metabolite":[
"23cump"
],
"biocyc":[
"META:CPD-3725"
],
"chebi":[
"CHEBI:28637",
"CHEBI:826",
"CHEBI:60873",
"CHEBI:19215"
],
"hmdb":[
"HMDB11640"
],
"inchi_key":[
"HWDMHJDYMFRXOX-XVFCMESISA-M"
],
"kegg.compound":[
"C02355"
],
"metanetx.chemical":[
"MNXM3150"
],
"sabiork":[
"2407"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01572"
]
}
},
{
"id":"dad_5_c",
"name":"5'-Deoxyadenosine",
"compartment":"c",
"charge":0,
"formula":"C10H13N5O3",
"notes":{
"original_bigg_ids":[
"dad_5_c"
]
},
"annotation":{
"bigg.metabolite":[
"dad_5"
],
"biocyc":[
"META:CH33ADO"
],
"chebi":[
"CHEBI:17319",
"CHEBI:12061",
"CHEBI:1960",
"CHEBI:40099",
"CHEBI:20493"
],
"hmdb":[
"HMDB01983"
],
"inchi_key":[
"XGYIMTFOTBMPFP-KQYNXXCUSA-N"
],
"kegg.compound":[
"C05198"
],
"metanetx.chemical":[
"MNXM316"
],
"reactome.compound":[
"1130791",
"947703"
],
"sabiork":[
"2720"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03091"
]
}
},
{
"id":"2agpg141_p",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)",
"compartment":"p",
"charge":-1,
"formula":"C20H38O9P1",
"notes":{
"original_bigg_ids":[
"2agpg141_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg141"
],
"metanetx.chemical":[
"MNXM3452"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ade_c",
"name":"Adenine",
"compartment":"c",
"charge":0,
"formula":"C5H5N5",
"notes":{
"original_bigg_ids":[
"ade_c"
]
},
"annotation":{
"bigg.metabolite":[
"ade"
],
"biocyc":[
"META:ADENINE",
"META:ADENINE-RING"
],
"chebi":[
"CHEBI:16708",
"CHEBI:22236",
"CHEBI:40579",
"CHEBI:13733",
"CHEBI:2470"
],
"hmdb":[
"HMDB00034"
],
"inchi_key":[
"GFFGJBXGBJISGV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00147"
],
"kegg.drug":[
"D00034"
],
"metanetx.chemical":[
"MNXM168"
],
"reactome.compound":[
"83951"
],
"sabiork":[
"57"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00128",
"cpd22238"
]
}
},
{
"id":"2agpg160_p",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)",
"compartment":"p",
"charge":-1,
"formula":"C22H44O9P1",
"notes":{
"original_bigg_ids":[
"2agpg160_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg160"
],
"biocyc":[
"META:CPD-8363"
],
"inchi_key":[
"ODJYINYQGFIIRK-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM34740"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25200"
],
"slm":[
"000046415"
]
}
},
{
"id":"2agpg160_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C22H44O9P1",
"notes":{
"original_bigg_ids":[
"2agpg160_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg160"
],
"biocyc":[
"META:CPD-8363"
],
"inchi_key":[
"ODJYINYQGFIIRK-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM34740"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25200"
],
"slm":[
"000046415"
]
}
},
{
"id":"h_p",
"name":"H+",
"compartment":"p",
"charge":1,
"formula":"H",
"notes":{
"original_bigg_ids":[
"h_p"
]
},
"annotation":{
"bigg.metabolite":[
"h"
],
"biocyc":[
"META:PROTON"
],
"chebi":[
"CHEBI:5584",
"CHEBI:13357",
"CHEBI:15378",
"CHEBI:10744"
],
"hmdb":[
"HMDB59597"
],
"inchi_key":[
"GPRLSGONYQIRFK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00080"
],
"metanetx.chemical":[
"MNXM1"
],
"reactome.compound":[
"2000349",
"425978",
"74722",
"428040",
"427899",
"428548",
"156540",
"70106",
"425969",
"1132304",
"5668577",
"1470067",
"163953",
"193465",
"113529",
"351626",
"425999",
"194688",
"374900",
"2872447",
"372511"
],
"sabiork":[
"39"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00067"
]
}
},
{
"id":"ara5p_c",
"name":"D-Arabinose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"ara5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"ara5p"
],
"biocyc":[
"META:ARABINOSE-5P"
],
"chebi":[
"CHEBI:12916",
"CHEBI:79058",
"CHEBI:57693",
"CHEBI:16241",
"CHEBI:4104",
"CHEBI:20915"
],
"hmdb":[
"HMDB11734"
],
"inchi_key":[
"PPQRONHOSHZGFQ-WDCZJNDASA-L"
],
"kegg.compound":[
"C01112"
],
"metanetx.chemical":[
"MNXM1184"
],
"sabiork":[
"25303",
"1478"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00817"
]
}
},
{
"id":"23dappa_c",
"name":"2,3-diaminopropionate",
"compartment":"c",
"charge":1,
"formula":"C3H9N2O2",
"notes":{
"original_bigg_ids":[
"23dappa_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dappa"
],
"biocyc":[
"META:L-23-DIAMINOPROPANOATE",
"META:23-Diaminopropanoate"
],
"chebi":[
"CHEBI:19309",
"CHEBI:16303",
"CHEBI:18383",
"CHEBI:11419",
"CHEBI:84374",
"CHEBI:42159",
"CHEBI:58468",
"CHEBI:6153",
"CHEBI:876",
"CHEBI:42164",
"CHEBI:13043",
"CHEBI:49983",
"CHEBI:57721",
"CHEBI:21190"
],
"hmdb":[
"HMDB02006"
],
"inchi_key":[
"PECYZEOJVXMISF-REOHCLBHSA-N"
],
"kegg.compound":[
"C06393",
"C03401"
],
"lipidmaps":[
"LMFA01100051"
],
"metanetx.chemical":[
"MNXM91374"
],
"sabiork":[
"8608",
"6603"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02150",
"cpd21925",
"cpd03828"
]
}
},
{
"id":"2agpg161_p",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)",
"compartment":"p",
"charge":-1,
"formula":"C22H42O9P1",
"notes":{
"original_bigg_ids":[
"2agpg161_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg161"
],
"metanetx.chemical":[
"MNXM3453"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ru5p__D_c",
"name":"D-Ribulose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"ru5p_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"ru5p__D"
],
"biocyc":[
"META:RIBULOSE-5P"
],
"chebi":[
"CHEBI:40192",
"CHEBI:21088",
"CHEBI:17363",
"CHEBI:26572",
"CHEBI:13040",
"CHEBI:37455",
"CHEBI:58121",
"CHEBI:13018",
"CHEBI:4243"
],
"hmdb":[
"HMDB02033",
"HMDB02694",
"HMDB00618"
],
"inchi_key":[
"FNZLKVNUWIIPSJ-UHNVWZDZSA-L"
],
"kegg.compound":[
"C00199"
],
"metanetx.chemical":[
"MNXM145"
],
"reactome.compound":[
"29732"
],
"sabiork":[
"22814",
"1313"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00171"
]
}
},
{
"id":"2agpg161_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C22H42O9P1",
"notes":{
"original_bigg_ids":[
"2agpg161_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg161"
],
"metanetx.chemical":[
"MNXM3453"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpg180_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C24H48O9P1",
"notes":{
"original_bigg_ids":[
"2agpg180_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg180"
],
"biocyc":[
"META:CPD0-2133"
],
"hmdb":[
"HMDB61703"
],
"inchi_key":[
"ZYKIFISVQNGKFE-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM150642"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26427"
]
}
},
{
"id":"23dappa_p",
"name":"2,3-diaminopropionate",
"compartment":"p",
"charge":1,
"formula":"C3H9N2O2",
"notes":{
"original_bigg_ids":[
"23dappa_p"
]
},
"annotation":{
"bigg.metabolite":[
"23dappa"
],
"biocyc":[
"META:L-23-DIAMINOPROPANOATE",
"META:23-Diaminopropanoate"
],
"chebi":[
"CHEBI:19309",
"CHEBI:16303",
"CHEBI:18383",
"CHEBI:11419",
"CHEBI:84374",
"CHEBI:42159",
"CHEBI:58468",
"CHEBI:6153",
"CHEBI:876",
"CHEBI:42164",
"CHEBI:13043",
"CHEBI:49983",
"CHEBI:57721",
"CHEBI:21190"
],
"hmdb":[
"HMDB02006"
],
"inchi_key":[
"PECYZEOJVXMISF-REOHCLBHSA-N"
],
"kegg.compound":[
"C06393",
"C03401"
],
"lipidmaps":[
"LMFA01100051"
],
"metanetx.chemical":[
"MNXM91374"
],
"sabiork":[
"8608",
"6603"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02150",
"cpd21925",
"cpd03828"
]
}
},
{
"id":"23dappa_e",
"name":"2,3-diaminopropionate",
"compartment":"e",
"charge":1,
"formula":"C3H9N2O2",
"notes":{
"original_bigg_ids":[
"23dappa_e"
]
},
"annotation":{
"bigg.metabolite":[
"23dappa"
],
"biocyc":[
"META:L-23-DIAMINOPROPANOATE",
"META:23-Diaminopropanoate"
],
"chebi":[
"CHEBI:19309",
"CHEBI:16303",
"CHEBI:18383",
"CHEBI:11419",
"CHEBI:84374",
"CHEBI:42159",
"CHEBI:58468",
"CHEBI:6153",
"CHEBI:876",
"CHEBI:42164",
"CHEBI:13043",
"CHEBI:49983",
"CHEBI:57721",
"CHEBI:21190"
],
"hmdb":[
"HMDB02006"
],
"inchi_key":[
"PECYZEOJVXMISF-REOHCLBHSA-N"
],
"kegg.compound":[
"C06393",
"C03401"
],
"lipidmaps":[
"LMFA01100051"
],
"metanetx.chemical":[
"MNXM91374"
],
"sabiork":[
"8608",
"6603"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02150",
"cpd21925",
"cpd03828"
]
}
},
{
"id":"octeACP_c",
"name":"Cis-octadec-11-enoyl-[acyl-carrier protein] (n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C402H635O143N96P1S3",
"notes":{
"original_bigg_ids":[
"octeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"octeACP"
],
"metanetx.chemical":[
"MNXM89950"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3ump_p",
"name":"3  UMP C9H11N2O9P",
"compartment":"p",
"charge":-2,
"formula":"C9H11N2O9P",
"notes":{
"original_bigg_ids":[
"3ump_p"
]
},
"annotation":{
"bigg.metabolite":[
"3ump"
],
"biocyc":[
"META:CPD-3724"
],
"chebi":[
"CHEBI:1361",
"CHEBI:28895",
"CHEBI:27229",
"CHEBI:556513",
"CHEBI:60784",
"CHEBI:46259"
],
"hmdb":[
"HMDB60282"
],
"inchi_key":[
"FOGRQMPFHUHIGU-XVFCMESISA-L"
],
"kegg.compound":[
"C01368"
],
"metanetx.chemical":[
"MNXM2184"
],
"sabiork":[
"1716"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00989"
]
}
},
{
"id":"h2o_p",
"name":"H2O H2O",
"compartment":"p",
"charge":0,
"formula":"H2O",
"notes":{
"original_bigg_ids":[
"h2o_p"
]
},
"annotation":{
"bigg.metabolite":[
"h2o"
],
"biocyc":[
"META:CPD-15815",
"META:OXONIUM",
"META:HYDROXYL-GROUP",
"META:WATER",
"META:OH"
],
"chebi":[
"CHEBI:13352",
"CHEBI:30490",
"CHEBI:43228",
"CHEBI:33813",
"CHEBI:44292",
"CHEBI:44641",
"CHEBI:27313",
"CHEBI:42043",
"CHEBI:44819",
"CHEBI:29356",
"CHEBI:5594",
"CHEBI:10743",
"CHEBI:15377",
"CHEBI:42857",
"CHEBI:13365",
"CHEBI:29412",
"CHEBI:16234",
"CHEBI:13419",
"CHEBI:5585",
"CHEBI:44701"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/799908db-b8c9-4982-86cb-1f225e2ad08c",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e7f34a8e-cded-4793-b6d5-792335b38636",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/969d0227-3069-4e44-9525-7ae7bad84170"
],
"hmdb":[
"HMDB02111",
"HMDB01039"
],
"inchi_key":[
"XLYOFNOQVPJJNP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00001",
"C01328"
],
"kegg.drug":[
"D00001",
"D06322"
],
"metanetx.chemical":[
"MNXM2"
],
"reactome.compound":[
"113521",
"141343",
"2022884",
"5278291",
"29356",
"189422",
"5668574",
"5693747",
"109276",
"113519",
"1605715",
"8851517",
"113518",
"351603"
],
"sabiork":[
"40"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27222",
"cpd00001",
"cpd15275"
]
}
},
{
"id":"2agpg180_p",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)",
"compartment":"p",
"charge":-1,
"formula":"C24H48O9P1",
"notes":{
"original_bigg_ids":[
"2agpg180_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg180"
],
"biocyc":[
"META:CPD0-2133"
],
"hmdb":[
"HMDB61703"
],
"inchi_key":[
"ZYKIFISVQNGKFE-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM150642"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26427"
]
}
},
{
"id":"2agpg181_c",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C24H46O9P1",
"notes":{
"original_bigg_ids":[
"2agpg181_c"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg181"
],
"metanetx.chemical":[
"MNXM3455"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ocdcaACP_c",
"name":"Octadecanoyl-ACP (n-C18:0ACP)",
"compartment":"c",
"charge":-1,
"formula":"C402H637O143N96P1S3",
"notes":{
"original_bigg_ids":[
"ocdcaACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcaACP"
],
"metanetx.chemical":[
"MNXM3075"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2agpg181_p",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)",
"compartment":"p",
"charge":-1,
"formula":"C24H46O9P1",
"notes":{
"original_bigg_ids":[
"2agpg181_p"
]
},
"annotation":{
"bigg.metabolite":[
"2agpg181"
],
"metanetx.chemical":[
"MNXM3455"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3cmp_p",
"name":"3  CMP C9H12N3O8P",
"compartment":"p",
"charge":-2,
"formula":"C9H12N3O8P",
"notes":{
"original_bigg_ids":[
"3cmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"3cmp"
],
"biocyc":[
"META:CPD-3711"
],
"chebi":[
"CHEBI:28929",
"CHEBI:53013",
"CHEBI:41615",
"CHEBI:41345",
"CHEBI:1335",
"CHEBI:60875",
"CHEBI:23517"
],
"inchi_key":[
"UOOOPKANIPLQPU-XVFCMESISA-L"
],
"kegg.compound":[
"C05822"
],
"metanetx.chemical":[
"MNXM2182"
],
"sabiork":[
"1848"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03454"
]
}
},
{
"id":"dca_c",
"name":"Decanoate (n-C10:0)",
"compartment":"c",
"charge":-1,
"formula":"C10H19O2",
"notes":{
"original_bigg_ids":[
"dca_c"
]
},
"annotation":{
"bigg.metabolite":[
"dca"
],
"metanetx.chemical":[
"MNXM162295"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3amp_p",
"name":"3  AMP C10H12N5O7P",
"compartment":"p",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"3amp_p"
]
},
"annotation":{
"bigg.metabolite":[
"3amp"
],
"biocyc":[
"META:CPD-3706"
],
"chebi":[
"CHEBI:40872",
"CHEBI:28931",
"CHEBI:60880",
"CHEBI:22241",
"CHEBI:1333"
],
"hmdb":[
"HMDB06550",
"HMDB03540"
],
"inchi_key":[
"LNQVTSROQXJCDD-KQYNXXCUSA-L"
],
"kegg.compound":[
"C01367"
],
"metanetx.chemical":[
"MNXM1985"
],
"sabiork":[
"1715"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00988"
]
}
},
{
"id":"pg120_c",
"name":"Phosphatidylglycerol (didodecanoyl, n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C30H58O10P1",
"notes":{
"original_bigg_ids":[
"pg120_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg120"
],
"metanetx.chemical":[
"MNXM1771"
],
"sbo":"SBO:0000247"
}
},
{
"id":"octa_c",
"name":"Octanoate (n-C8:0)",
"compartment":"c",
"charge":-1,
"formula":"C8H15O2",
"notes":{
"original_bigg_ids":[
"octa_c"
]
},
"annotation":{
"bigg.metabolite":[
"octa"
],
"biocyc":[
"META:CPD-195"
],
"chebi":[
"CHEBI:25648",
"CHEBI:25646",
"CHEBI:28837",
"CHEBI:3373",
"CHEBI:44501"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2202db6c-dc64-4714-9f17-23dbbb8d637f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/7623a8e3-3436-493a-ad6e-13af00ad46d8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/fa5b4ef6-749e-42db-a909-7c6e56587bdd"
],
"hmdb":[
"HMDB62511",
"HMDB00482"
],
"inchi_key":[
"WWZKQHOCKIZLMA-UHFFFAOYSA-M"
],
"kegg.compound":[
"C06423"
],
"kegg.drug":[
"D05220"
],
"lipidmaps":[
"LMFA01010008"
],
"metanetx.chemical":[
"MNXM750"
],
"sabiork":[
"2889"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03846"
],
"slm":[
"000000853"
]
}
},
{
"id":"pg140_c",
"name":"Phosphatidylglycerol (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C34H66O10P1",
"notes":{
"original_bigg_ids":[
"pg140_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg140"
],
"biocyc":[
"META:CPD-19677"
],
"chebi":[
"CHEBI:60723"
],
"inchi_key":[
"BPHQZTVXXXJVHI-AJQTZOPKSA-M"
],
"lipidmaps":[
"LMGP04010005"
],
"metanetx.chemical":[
"MNXM51019"
],
"sbo":"SBO:0000247",
"slm":[
"000041313"
]
}
},
{
"id":"3gmp_p",
"name":"Guanosine 3  phosphate C10H12N5O8P",
"compartment":"p",
"charge":-2,
"formula":"C10H12N5O8P",
"notes":{
"original_bigg_ids":[
"3gmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"3gmp"
],
"biocyc":[
"META:CPD-3708"
],
"chebi":[
"CHEBI:5567",
"CHEBI:24447",
"CHEBI:60732",
"CHEBI:28072",
"CHEBI:39948",
"CHEBI:42888"
],
"inchi_key":[
"ZDPUTNZENXVHJC-UUOKFMHZSA-L"
],
"kegg.compound":[
"C06193"
],
"metanetx.chemical":[
"MNXM2183"
],
"sabiork":[
"1857"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03701"
]
}
},
{
"id":"o2_c",
"name":"O2 O2",
"compartment":"c",
"charge":0,
"formula":"O2",
"notes":{
"original_bigg_ids":[
"o2_c"
]
},
"annotation":{
"bigg.metabolite":[
"o2"
],
"biocyc":[
"META:OXYGEN-MOLECULE"
],
"chebi":[
"CHEBI:7860",
"CHEBI:26689",
"CHEBI:29097",
"CHEBI:15379",
"CHEBI:13416",
"CHEBI:27140",
"CHEBI:29793",
"CHEBI:30491",
"CHEBI:44742",
"CHEBI:23833",
"CHEBI:25366",
"CHEBI:10745"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/d5d12248-82d3-4cf3-b7d0-2e3d096768b4"
],
"hmdb":[
"HMDB01377"
],
"inchi_key":[
"MYMOFIZGZYHOMD-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00007"
],
"kegg.drug":[
"D00003"
],
"metanetx.chemical":[
"MNXM4"
],
"reactome.compound":[
"113534",
"113535",
"113685",
"5668566",
"189461",
"113533",
"1131511",
"352327",
"351593",
"29368",
"1236709"
],
"sabiork":[
"1264"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00007"
]
}
},
{
"id":"26dap__M_p",
"name":"Meso-2,6-Diaminoheptanedioate",
"compartment":"p",
"charge":0,
"formula":"C7H14N2O4",
"notes":{
"original_bigg_ids":[
"26dap_M_p"
]
},
"annotation":{
"bigg.metabolite":[
"26dap__M"
],
"biocyc":[
"META:MESO-DIAMINOPIMELATE"
],
"chebi":[
"CHEBI:40838",
"CHEBI:12823",
"CHEBI:30308",
"CHEBI:57791",
"CHEBI:10598",
"CHEBI:25203",
"CHEBI:12825",
"CHEBI:12822",
"CHEBI:25204",
"CHEBI:16488"
],
"inchi_key":[
"GMKMEZVLHJARHF-SYDPRGILSA-N"
],
"kegg.compound":[
"C00680"
],
"metanetx.chemical":[
"MNXM529"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00516"
]
}
},
{
"id":"26dap__M_e",
"name":"Meso-2,6-Diaminoheptanedioate",
"compartment":"e",
"charge":0,
"formula":"C7H14N2O4",
"notes":{
"original_bigg_ids":[
"26dap_M_e"
]
},
"annotation":{
"bigg.metabolite":[
"26dap__M"
],
"biocyc":[
"META:MESO-DIAMINOPIMELATE"
],
"chebi":[
"CHEBI:40838",
"CHEBI:12823",
"CHEBI:30308",
"CHEBI:57791",
"CHEBI:10598",
"CHEBI:25203",
"CHEBI:12825",
"CHEBI:12822",
"CHEBI:25204",
"CHEBI:16488"
],
"inchi_key":[
"GMKMEZVLHJARHF-SYDPRGILSA-N"
],
"kegg.compound":[
"C00680"
],
"metanetx.chemical":[
"MNXM529"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00516"
]
}
},
{
"id":"2ddecg3p_p",
"name":"2-dodecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-1,
"formula":"C15H30O7P1",
"notes":{
"original_bigg_ids":[
"2ddecg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"2ddecg3p"
],
"metanetx.chemical":[
"MNXM5461"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15350"
]
}
},
{
"id":"pg141_c",
"name":"Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C34H62O10P1",
"notes":{
"original_bigg_ids":[
"pg141_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg141"
],
"metanetx.chemical":[
"MNXM2029"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg160_c",
"name":"Phosphatidylglycerol (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C38H74O10P1",
"notes":{
"original_bigg_ids":[
"pg160_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg160"
],
"biocyc":[
"META:CPD-8260"
],
"chebi":[
"CHEBI:73205",
"CHEBI:72829",
"CHEBI:75159"
],
"hmdb":[
"HMDB10570"
],
"inchi_key":[
"BIABMEZBCHDPBV-MPQUPPDSSA-M"
],
"lipidmaps":[
"LMGP04010986"
],
"metanetx.chemical":[
"MNXM32179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15538",
"cpd25117"
],
"slm":[
"000000812"
]
}
},
{
"id":"pg161_c",
"name":"Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C38H70O10P1",
"notes":{
"original_bigg_ids":[
"pg161_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg161"
],
"biocyc":[
"META:CPD0-2330"
],
"inchi_key":[
"GHQNERCMPIDAAU-ANXSUKRNSA-M"
],
"metanetx.chemical":[
"MNXM75101"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15539",
"cpd26463"
]
}
},
{
"id":"aact_c",
"name":"Aminoacetone",
"compartment":"c",
"charge":1,
"formula":"C3H8NO",
"notes":{
"original_bigg_ids":[
"aact_c"
]
},
"annotation":{
"bigg.metabolite":[
"aact"
],
"biocyc":[
"META:AMINO-ACETONE"
],
"chebi":[
"CHEBI:42749",
"CHEBI:58320",
"CHEBI:2648",
"CHEBI:19025",
"CHEBI:17906",
"CHEBI:13767",
"CHEBI:42849"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c7d3904a-a2ab-4e04-8933-d57d61dca653"
],
"hmdb":[
"HMDB60177",
"HMDB02134"
],
"inchi_key":[
"BCDGQXUMWHRQCB-UHFFFAOYSA-O"
],
"kegg.compound":[
"C01888"
],
"metanetx.chemical":[
"MNXM1106"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01298"
]
}
},
{
"id":"pg180_c",
"name":"Phosphatidylglycerol (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C42H82O10P1",
"notes":{
"original_bigg_ids":[
"pg180_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg180"
],
"biocyc":[
"META:CPD-12822"
],
"hmdb":[
"HMDB10602"
],
"inchi_key":[
"FVJZSBGHRPJMMA-IOLBBIBUSA-M"
],
"lipidmaps":[
"LMGP04010038"
],
"metanetx.chemical":[
"MNXM75102"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15540",
"cpd23600"
],
"slm":[
"000041308"
]
}
},
{
"id":"pg181_c",
"name":"Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C42H78O10P1",
"notes":{
"original_bigg_ids":[
"pg181_c"
]
},
"annotation":{
"bigg.metabolite":[
"pg181"
],
"biocyc":[
"META:CPD-18396"
],
"metanetx.chemical":[
"MNXM1773"
],
"sbo":"SBO:0000247",
"slm":[
"000041239"
]
}
},
{
"id":"2ddecg3p_c",
"name":"2-dodecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C15H30O7P1",
"notes":{
"original_bigg_ids":[
"2ddecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ddecg3p"
],
"metanetx.chemical":[
"MNXM5461"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15350"
]
}
},
{
"id":"nh4_c",
"name":"Ammonium",
"compartment":"c",
"charge":1,
"formula":"H4N",
"notes":{
"original_bigg_ids":[
"nh4_c"
]
},
"annotation":{
"bigg.metabolite":[
"nh4"
],
"biocyc":[
"META:AMMONIUM",
"META:AMMONIA"
],
"chebi":[
"CHEBI:44284",
"CHEBI:135980",
"CHEBI:22533",
"CHEBI:13406",
"CHEBI:29337",
"CHEBI:29340",
"CHEBI:13771",
"CHEBI:16134",
"CHEBI:28938",
"CHEBI:22534",
"CHEBI:13405",
"CHEBI:49783",
"CHEBI:7434",
"CHEBI:7435",
"CHEBI:44269",
"CHEBI:44404",
"CHEBI:13407"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/96667bd9-aeae-4e8f-89d3-100d0396af05",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/41e4c903-407f-49f7-bf6b-0a94d39fa3a7",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/27a89bdf-42f7-478f-91d8-e39881581096"
],
"hmdb":[
"HMDB00051",
"HMDB41827"
],
"inchi_key":[
"QGZKDVFQNNGYKY-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00014",
"C01342"
],
"kegg.drug":[
"D02916",
"D02915"
],
"metanetx.chemical":[
"MNXM15"
],
"reactome.compound":[
"5693978",
"1132163",
"29382",
"76230",
"140912",
"389843",
"2022135",
"31633",
"113561"
],
"sabiork":[
"1268",
"43"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19013",
"cpd00013"
]
}
},
{
"id":"2tdecg3p_p",
"name":"2-tetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-1,
"formula":"C17H34O7P1",
"notes":{
"original_bigg_ids":[
"2tdecg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"2tdecg3p"
],
"metanetx.chemical":[
"MNXM5491"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15363"
]
}
},
{
"id":"mthgxl_c",
"name":"Methylglyoxal",
"compartment":"c",
"charge":0,
"formula":"C3H4O2",
"notes":{
"original_bigg_ids":[
"mthgxl_c"
]
},
"annotation":{
"bigg.metabolite":[
"mthgxl"
],
"biocyc":[
"META:METHYL-GLYOXAL"
],
"chebi":[
"CHEBI:14599",
"CHEBI:25303",
"CHEBI:11643",
"CHEBI:6875",
"CHEBI:17158"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/87b7fac4-f224-43ab-81f4-b95330450174"
],
"hmdb":[
"HMDB01167"
],
"inchi_key":[
"AIJULSRZWUXGPQ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00546"
],
"metanetx.chemical":[
"MNXM310"
],
"reactome.compound":[
"5694074"
],
"sabiork":[
"2088"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00428"
]
}
},
{
"id":"glcn_c",
"name":"D-Gluconate",
"compartment":"c",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"glcn_c"
]
},
"annotation":{
"bigg.metabolite":[
"glcn"
],
"biocyc":[
"META:GLUCONATE"
],
"chebi":[
"CHEBI:20983",
"CHEBI:20985",
"CHEBI:18391",
"CHEBI:20986",
"CHEBI:24265",
"CHEBI:24266",
"CHEBI:12955",
"CHEBI:33198",
"CHEBI:4157",
"CHEBI:42715"
],
"hmdb":[
"HMDB00625",
"HMDB03373"
],
"inchi_key":[
"RGHNJXZEOKUKBD-SQOUGZDYSA-M"
],
"kegg.compound":[
"C00257"
],
"metanetx.chemical":[
"MNXM341"
],
"sabiork":[
"23420",
"1998"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00222"
]
}
},
{
"id":"h2o2_c",
"name":"Hydrogen peroxide",
"compartment":"c",
"charge":0,
"formula":"H2O2",
"notes":{
"original_bigg_ids":[
"h2o2_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2o2"
],
"biocyc":[
"META:HYDROGEN-PEROXIDE"
],
"chebi":[
"CHEBI:29192",
"CHEBI:44785",
"CHEBI:13355",
"CHEBI:13354",
"CHEBI:29370",
"CHEBI:24637",
"CHEBI:44812",
"CHEBI:5586",
"CHEBI:25940",
"CHEBI:44782",
"CHEBI:16240"
],
"hmdb":[
"HMDB03125",
"HMDB06491"
],
"inchi_key":[
"MHAJPDPJQMAIIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00027"
],
"kegg.drug":[
"D00008"
],
"metanetx.chemical":[
"MNXM22"
],
"reactome.compound":[
"1614617",
"29408",
"351629",
"189481",
"113575"
],
"sabiork":[
"1909"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00025"
]
}
},
{
"id":"nad_c",
"name":"Nicotinamide adenine dinucleotide",
"compartment":"c",
"charge":-1,
"formula":"C21H26N7O14P2",
"notes":{
"original_bigg_ids":[
"nad_c"
]
},
"annotation":{
"bigg.metabolite":[
"nad"
],
"biocyc":[
"META:NAD"
],
"chebi":[
"CHEBI:7422",
"CHEBI:44215",
"CHEBI:13394",
"CHEBI:21901",
"CHEBI:57540",
"CHEBI:15846",
"CHEBI:44281",
"CHEBI:44214",
"CHEBI:13393",
"CHEBI:29867"
],
"hmdb":[
"HMDB00902"
],
"inchi_key":[
"BAWFJGJZGIEFAR-NNYOXOHSSA-M"
],
"kegg.compound":[
"C00003"
],
"kegg.drug":[
"D00002"
],
"metanetx.chemical":[
"MNXM8"
],
"reactome.compound":[
"352330",
"192307",
"194653",
"113526",
"29360"
],
"sabiork":[
"37"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00003"
]
}
},
{
"id":"malthx_c",
"name":"Maltohexaose",
"compartment":"c",
"charge":0,
"formula":"C36H62O31",
"notes":{
"original_bigg_ids":[
"malthx_c"
]
},
"annotation":{
"bigg.metabolite":[
"malthx"
],
"biocyc":[
"META:MALTOHEXAOSE"
],
"chebi":[
"CHEBI:61953",
"CHEBI:6667",
"CHEBI:27445",
"CHEBI:25141"
],
"hmdb":[
"HMDB12253"
],
"inchi_key":[
"OCIBBXPLUVYKCH-QXVNYKTNSA-N"
],
"kegg.compound":[
"C01936"
],
"kegg.glycan":[
"G00755"
],
"metanetx.chemical":[
"MNXM1317"
],
"sabiork":[
"5897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01329"
]
}
},
{
"id":"gtp_c",
"name":"GTP C10H12N5O14P3",
"compartment":"c",
"charge":-4,
"formula":"C10H12N5O14P3",
"notes":{
"original_bigg_ids":[
"gtp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gtp"
],
"biocyc":[
"META:GTP"
],
"chebi":[
"CHEBI:37565",
"CHEBI:15996",
"CHEBI:13342",
"CHEBI:57600",
"CHEBI:5234",
"CHEBI:42934",
"CHEBI:24451"
],
"hmdb":[
"HMDB01273"
],
"inchi_key":[
"XKMLYUALXHKNFT-UUOKFMHZSA-J"
],
"kegg.compound":[
"C00044"
],
"metanetx.chemical":[
"MNXM51"
],
"reactome.compound":[
"113573",
"29438"
],
"sabiork":[
"1282"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00038"
]
}
},
{
"id":"malthx_p",
"name":"Maltohexaose",
"compartment":"p",
"charge":0,
"formula":"C36H62O31",
"notes":{
"original_bigg_ids":[
"malthx_p"
]
},
"annotation":{
"bigg.metabolite":[
"malthx"
],
"biocyc":[
"META:MALTOHEXAOSE"
],
"chebi":[
"CHEBI:61953",
"CHEBI:6667",
"CHEBI:27445",
"CHEBI:25141"
],
"hmdb":[
"HMDB12253"
],
"inchi_key":[
"OCIBBXPLUVYKCH-QXVNYKTNSA-N"
],
"kegg.compound":[
"C01936"
],
"kegg.glycan":[
"G00755"
],
"metanetx.chemical":[
"MNXM1317"
],
"sabiork":[
"5897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01329"
]
}
},
{
"id":"malcoa_c",
"name":"Malonyl CoA C24H33N7O19P3S",
"compartment":"c",
"charge":-5,
"formula":"C24H33N7O19P3S",
"notes":{
"original_bigg_ids":[
"malcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"malcoa"
],
"biocyc":[
"META:MALONYL-COA"
],
"chebi":[
"CHEBI:25135",
"CHEBI:43979",
"CHEBI:57384",
"CHEBI:14565",
"CHEBI:15531",
"CHEBI:6661"
],
"hmdb":[
"HMDB01175"
],
"inchi_key":[
"LTYOQGRJFJAKNA-DVVLENMVSA-I"
],
"kegg.compound":[
"C00083"
],
"lipidmaps":[
"LMFA07050345",
"LMFA07050031"
],
"metanetx.chemical":[
"MNXM40"
],
"reactome.compound":[
"977323",
"2046066",
"29508"
],
"sabiork":[
"1930"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00070",
"cpd12270"
]
}
},
{
"id":"g6p_c",
"name":"D-Glucose 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"g6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"g6p"
],
"biocyc":[
"META:D-glucopyranose-6-phosphate"
],
"chebi":[
"CHEBI:61548",
"CHEBI:14314",
"CHEBI:4170"
],
"hmdb":[
"HMDB01549",
"HMDB01401",
"HMDB06793"
],
"inchi_key":[
"NBSCHQHZLSJFNQ-GASJEMHNSA-L"
],
"kegg.compound":[
"C00092"
],
"metanetx.chemical":[
"MNXM160"
],
"reactome.compound":[
"1629756"
],
"sabiork":[
"1404",
"1405"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00079",
"cpd26836"
]
}
},
{
"id":"hco3_c",
"name":"Bicarbonate",
"compartment":"c",
"charge":-1,
"formula":"CHO3",
"notes":{
"original_bigg_ids":[
"hco3_c"
]
},
"annotation":{
"bigg.metabolite":[
"hco3"
],
"biocyc":[
"META:CO3",
"META:H2CO3",
"META:HCO3"
],
"chebi":[
"CHEBI:13363",
"CHEBI:41605",
"CHEBI:13351",
"CHEBI:29201",
"CHEBI:22863",
"CHEBI:3401",
"CHEBI:23017",
"CHEBI:23744",
"CHEBI:40961",
"CHEBI:41609",
"CHEBI:17544",
"CHEBI:28976",
"CHEBI:5589"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/c78c72b7-2f2b-4dde-9f3d-80bb61a1da3e",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/34be09c7-8615-4ee1-806a-6a93ae28d922"
],
"hmdb":[
"HMDB03538",
"HMDB00595",
"HMDB31453"
],
"inchi_key":[
"BVKZGUZCCUSVTD-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01353",
"C00288"
],
"metanetx.chemical":[
"MNXM60"
],
"reactome.compound":[
"29896",
"425425",
"111627"
],
"sabiork":[
"1916",
"2275"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00242"
]
}
},
{
"id":"2dhglcn_c",
"name":"2-Dehydro-D-gluconate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"2dhglcn_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dhglcn"
],
"biocyc":[
"META:CPD-377"
],
"chebi":[
"CHEBI:27469",
"CHEBI:59504",
"CHEBI:1066",
"CHEBI:19669",
"CHEBI:1180",
"CHEBI:11559",
"CHEBI:58512",
"CHEBI:16808",
"CHEBI:19539"
],
"inchi_key":[
"VBUYCZFBVCCYFD-JJYYJPOSSA-M"
],
"kegg.compound":[
"C06473"
],
"metanetx.chemical":[
"MNXM582"
],
"sabiork":[
"2124"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00480",
"cpd03889"
]
}
},
{
"id":"hqn_c",
"name":"Hydroquinone",
"compartment":"c",
"charge":0,
"formula":"C6H6O2",
"notes":{
"original_bigg_ids":[
"hqn_c"
]
},
"annotation":{
"bigg.metabolite":[
"hqn"
],
"biocyc":[
"META:HYDROQUINONE"
],
"chebi":[
"CHEBI:17594",
"CHEBI:24645",
"CHEBI:14416",
"CHEBI:5793"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/792b6781-d85c-4c1d-bd82-a082fef85353",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/019d5653-a5fc-4ab4-8c6f-47577e8ef560",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/44858aec-2eb4-41d1-a154-388fd87dccac",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/33365a7e-24d4-4212-ad80-7b9a92572df5"
],
"hmdb":[
"HMDB02434"
],
"inchi_key":[
"QIGBRXMKCJKVMJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00530"
],
"kegg.drug":[
"D00073"
],
"metanetx.chemical":[
"MNXM376"
],
"sabiork":[
"2076"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00415"
]
}
},
{
"id":"nadh_c",
"name":"Nicotinamide adenine dinucleotide - reduced",
"compartment":"c",
"charge":-2,
"formula":"C21H27N7O14P2",
"notes":{
"original_bigg_ids":[
"nadh_c"
]
},
"annotation":{
"bigg.metabolite":[
"nadh"
],
"biocyc":[
"META:NADH"
],
"chebi":[
"CHEBI:13395",
"CHEBI:21902",
"CHEBI:7423",
"CHEBI:44216",
"CHEBI:57945",
"CHEBI:16908",
"CHEBI:13396"
],
"hmdb":[
"HMDB01487"
],
"inchi_key":[
"BOPGDPNILDQYTO-NNYOXOHSSA-L"
],
"kegg.compound":[
"C00004"
],
"metanetx.chemical":[
"MNXM10"
],
"reactome.compound":[
"192305",
"73473",
"29362",
"194697"
],
"sabiork":[
"38"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00004"
]
}
},
{
"id":"ppa_c",
"name":"Propionate (n-C3:0)",
"compartment":"c",
"charge":-1,
"formula":"C3H5O2",
"notes":{
"original_bigg_ids":[
"ppa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppa"
],
"metanetx.chemical":[
"MNXM162260"
],
"sbo":"SBO:0000247"
}
},
{
"id":"arbt6p_c",
"name":"Arbutin 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C12H15O10P",
"notes":{
"original_bigg_ids":[
"arbt6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"arbt6p"
],
"biocyc":[
"META:CPD-1162"
],
"chebi":[
"CHEBI:2807",
"CHEBI:60929"
],
"inchi_key":[
"FBHYCDOVYMVLEN-RMPHRYRLSA-L"
],
"kegg.compound":[
"C06187"
],
"metanetx.chemical":[
"MNXM2806"
],
"sabiork":[
"1855"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03697"
]
}
},
{
"id":"ppcoa_c",
"name":"Propanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C24H36N7O17P3S",
"notes":{
"original_bigg_ids":[
"ppcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppcoa"
],
"biocyc":[
"META:PROPIONYL-COA"
],
"chebi":[
"CHEBI:14907",
"CHEBI:57392",
"CHEBI:14904",
"CHEBI:26295",
"CHEBI:8479",
"CHEBI:15539"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4e032169-05c6-49aa-9422-d081d81bc1a6"
],
"hmdb":[
"HMDB01275"
],
"inchi_key":[
"QAQREVBBADEHPA-IEXPHMLFSA-J"
],
"kegg.compound":[
"C00100"
],
"lipidmaps":[
"LMFA07050364"
],
"metanetx.chemical":[
"MNXM86"
],
"reactome.compound":[
"192314",
"70843"
],
"sabiork":[
"1933"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12196",
"cpd00086"
],
"slm":[
"000389157"
]
}
},
{
"id":"nadph_c",
"name":"Nicotinamide adenine dinucleotide phosphate - reduced",
"compartment":"c",
"charge":-4,
"formula":"C21H26N7O17P3",
"notes":{
"original_bigg_ids":[
"nadph_c"
]
},
"annotation":{
"bigg.metabolite":[
"nadph"
],
"biocyc":[
"META:NADPH"
],
"chebi":[
"CHEBI:16474",
"CHEBI:7425",
"CHEBI:57783",
"CHEBI:21904",
"CHEBI:13399",
"CHEBI:13400",
"CHEBI:44286"
],
"hmdb":[
"HMDB06341",
"HMDB00221",
"HMDB00799"
],
"inchi_key":[
"ACFIXJIJDZMPPO-NNYOXOHSSA-J"
],
"kegg.compound":[
"C00005"
],
"metanetx.chemical":[
"MNXM6"
],
"reactome.compound":[
"113600",
"6790135",
"113602",
"113601",
"2000347",
"351627",
"29364",
"5623644",
"194725"
],
"sabiork":[
"1262"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00005"
]
}
},
{
"id":"4abut_c",
"name":"4-Aminobutanoate",
"compartment":"c",
"charge":0,
"formula":"C4H9NO2",
"notes":{
"original_bigg_ids":[
"4abut_c"
]
},
"annotation":{
"bigg.metabolite":[
"4abut"
],
"biocyc":[
"META:4-AMINO-BUTYRATE"
],
"chebi":[
"CHEBI:40483",
"CHEBI:20317",
"CHEBI:1786",
"CHEBI:16865",
"CHEBI:30566",
"CHEBI:193777",
"CHEBI:11961",
"CHEBI:59888",
"CHEBI:20318"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e90ecce1-b9b5-49f9-85d9-b83421426cbb"
],
"hmdb":[
"HMDB00112"
],
"inchi_key":[
"BTCSSZJGUNDROE-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00334"
],
"kegg.drug":[
"D00058"
],
"lipidmaps":[
"LMFA01100039"
],
"metanetx.chemical":[
"MNXM192"
],
"reactome.compound":[
"428571",
"352011",
"916850",
"352003"
],
"sabiork":[
"2021"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00281"
]
}
},
{
"id":"nadp_c",
"name":"Nicotinamide adenine dinucleotide phosphate",
"compartment":"c",
"charge":-3,
"formula":"C21H25N7O17P3",
"notes":{
"original_bigg_ids":[
"nadp_c"
]
},
"annotation":{
"bigg.metabolite":[
"nadp"
],
"biocyc":[
"META:NADP"
],
"chebi":[
"CHEBI:29868",
"CHEBI:44405",
"CHEBI:25523",
"CHEBI:13397",
"CHEBI:18009",
"CHEBI:7424",
"CHEBI:13398",
"CHEBI:21903",
"CHEBI:58349",
"CHEBI:44409"
],
"hmdb":[
"HMDB00217"
],
"inchi_key":[
"XJLXINKUBYWONI-NNYOXOHSSA-K"
],
"kegg.compound":[
"C00006"
],
"metanetx.chemical":[
"MNXM5"
],
"reactome.compound":[
"194668",
"113563",
"6790191",
"5623650",
"2000348",
"389556",
"29366",
"351628",
"113564"
],
"sabiork":[
"1263"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00006"
]
}
},
{
"id":"acgal1p_p",
"name":"N-Acetyl-D-galactosamine 1-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acgal1p_p"
]
},
"annotation":{
"bigg.metabolite":[
"acgal1p"
],
"biocyc":[
"META:CPD-7246"
],
"chebi":[
"CHEBI:55404",
"CHEBI:44313",
"CHEBI:61970"
],
"hmdb":[
"HMDB06480",
"HMDB59626"
],
"inchi_key":[
"FZLJPEPAYPUMMR-JAJWTYFOSA-L"
],
"kegg.compound":[
"C18060"
],
"metanetx.chemical":[
"MNXM2401"
],
"sabiork":[
"28728"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15390",
"cpd18043"
]
}
},
{
"id":"acgal_p",
"name":"N-Acetyl-D-galactosamine",
"compartment":"p",
"charge":0,
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acgal_p"
]
},
"annotation":{
"bigg.metabolite":[
"acgal"
],
"biocyc":[
"META:N-acetyl-D-galactosamine"
],
"chebi":[
"CHEBI:21502",
"CHEBI:7110",
"CHEBI:28800",
"CHEBI:7201",
"CHEBI:21600",
"CHEBI:28037",
"CHEBI:546804"
],
"inchi_key":[
"OVRNDRQMDRJTHS-KEWYIRBNSA-N"
],
"kegg.compound":[
"C01132"
],
"metanetx.chemical":[
"MNXM395"
],
"reactome.compound":[
"1605658"
],
"sabiork":[
"1573"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27607",
"cpd00832"
]
}
},
{
"id":"akg_c",
"name":"2-Oxoglutarate",
"compartment":"c",
"charge":-2,
"formula":"C5H4O5",
"notes":{
"original_bigg_ids":[
"akg_c"
]
},
"annotation":{
"bigg.metabolite":[
"akg"
],
"biocyc":[
"META:2-KETOGLUTARATE"
],
"chebi":[
"CHEBI:40661",
"CHEBI:16810",
"CHEBI:11638",
"CHEBI:30916",
"CHEBI:19749",
"CHEBI:1253",
"CHEBI:30915",
"CHEBI:19748"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5b0a94f6-d411-44fd-bcc1-fb79b4e697f5",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/6557f3f2-0ab8-494b-a865-8ce0eae788a9"
],
"hmdb":[
"HMDB00208",
"HMDB02812",
"HMDB62781"
],
"inchi_key":[
"KPGXRSRHYNQIFN-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00026"
],
"metanetx.chemical":[
"MNXM20"
],
"reactome.compound":[
"113594",
"561075",
"5278317",
"113671",
"29406",
"389537"
],
"sabiork":[
"1922"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00024"
]
}
},
{
"id":"acgal1p_e",
"name":"N-Acetyl-D-galactosamine 1-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acgal1p_e"
]
},
"annotation":{
"bigg.metabolite":[
"acgal1p"
],
"biocyc":[
"META:CPD-7246"
],
"chebi":[
"CHEBI:55404",
"CHEBI:44313",
"CHEBI:61970"
],
"hmdb":[
"HMDB06480",
"HMDB59626"
],
"inchi_key":[
"FZLJPEPAYPUMMR-JAJWTYFOSA-L"
],
"kegg.compound":[
"C18060"
],
"metanetx.chemical":[
"MNXM2401"
],
"sabiork":[
"28728"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15390",
"cpd18043"
]
}
},
{
"id":"glu__L_c",
"name":"L-Glutamate",
"compartment":"c",
"charge":-1,
"formula":"C5H8NO4",
"notes":{
"original_bigg_ids":[
"glu_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu__L"
],
"biocyc":[
"META:Glutamates",
"META:GLT"
],
"chebi":[
"CHEBI:76051",
"CHEBI:21301",
"CHEBI:29985",
"CHEBI:42825",
"CHEBI:29987",
"CHEBI:18237",
"CHEBI:24314",
"CHEBI:16015",
"CHEBI:13107",
"CHEBI:5431",
"CHEBI:21304",
"CHEBI:6224",
"CHEBI:14321",
"CHEBI:29988"
],
"hmdb":[
"HMDB00148",
"HMDB60475"
],
"inchi_key":[
"WHUUTDBJXJRKMK-VKHMYHEASA-M"
],
"kegg.compound":[
"C00025",
"C00302"
],
"kegg.drug":[
"D00007",
"D04341"
],
"metanetx.chemical":[
"MNXM89557"
],
"reactome.compound":[
"428614",
"29404",
"113552",
"210382"
],
"sabiork":[
"73",
"2010"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27177",
"cpd00023",
"cpd19002"
]
}
},
{
"id":"acgal_e",
"name":"N-Acetyl-D-galactosamine",
"compartment":"e",
"charge":0,
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acgal_e"
]
},
"annotation":{
"bigg.metabolite":[
"acgal"
],
"biocyc":[
"META:N-acetyl-D-galactosamine"
],
"chebi":[
"CHEBI:21502",
"CHEBI:7110",
"CHEBI:28800",
"CHEBI:7201",
"CHEBI:21600",
"CHEBI:28037",
"CHEBI:546804"
],
"inchi_key":[
"OVRNDRQMDRJTHS-KEWYIRBNSA-N"
],
"kegg.compound":[
"C01132"
],
"metanetx.chemical":[
"MNXM395"
],
"reactome.compound":[
"1605658"
],
"sabiork":[
"1573"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27607",
"cpd00832"
]
}
},
{
"id":"acgam1p_p",
"name":"N-Acetyl-D-glucosamine 1-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acgam1p_p"
]
},
"annotation":{
"bigg.metabolite":[
"acgam1p"
],
"chebi":[
"CHEBI:7125"
],
"hmdb":[
"HMDB01367"
],
"inchi_key":[
"FZLJPEPAYPUMMR-RTRLPJTCSA-L"
],
"kegg.compound":[
"C04256"
],
"metanetx.chemical":[
"MNXM91871"
],
"reactome.compound":[
"532204"
],
"sabiork":[
"1801",
"26400"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02611"
]
}
},
{
"id":"idon__L_c",
"name":"L-Idonate",
"compartment":"c",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"idon_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"idon__L"
],
"biocyc":[
"META:L-IDONATE"
],
"chebi":[
"CHEBI:13126",
"CHEBI:17796",
"CHEBI:21336",
"CHEBI:57659",
"CHEBI:6250",
"CHEBI:21335",
"CHEBI:58494"
],
"inchi_key":[
"RGHNJXZEOKUKBD-SKNVOMKLSA-M"
],
"kegg.compound":[
"C00770"
],
"metanetx.chemical":[
"MNXM1565"
],
"sabiork":[
"5225"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00573"
]
}
},
{
"id":"2dhguln_c",
"name":"2-Dehydro-L-gulonate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"2dhguln_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dhguln"
],
"metanetx.chemical":[
"MNXM114283"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15351"
]
}
},
{
"id":"sucsal_c",
"name":"Succinic semialdehyde",
"compartment":"c",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"sucsal_c"
]
},
"annotation":{
"bigg.metabolite":[
"sucsal"
],
"biocyc":[
"META:SUCC-S-ALD"
],
"chebi":[
"CHEBI:26805",
"CHEBI:16265",
"CHEBI:15126",
"CHEBI:57706",
"CHEBI:26804",
"CHEBI:9305"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/ca9b64a3-b0a1-4bec-8397-c86bf0d44409",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/909890c9-4671-45f3-803c-40412ae31e43"
],
"hmdb":[
"HMDB01259"
],
"inchi_key":[
"UIUJIQZEACWQSV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00232"
],
"lipidmaps":[
"LMFA06000118"
],
"metanetx.chemical":[
"MNXM172"
],
"reactome.compound":[
"880046"
],
"sabiork":[
"1984"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00199"
]
}
},
{
"id":"4ampm_c",
"name":"4-Amino-2-methyl-5-phosphomethylpyrimidine",
"compartment":"c",
"charge":-2,
"formula":"C6H8N3O4P",
"notes":{
"original_bigg_ids":[
"4ampm_c"
]
},
"annotation":{
"bigg.metabolite":[
"4ampm"
],
"chebi":[
"CHEBI:44219"
],
"inchi_key":[
"SSWDVESQMBHOQT-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM31161"
],
"sabiork":[
"7398"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02775"
]
}
},
{
"id":"2mahmp_c",
"name":"2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C6H8N3O7P2",
"notes":{
"original_bigg_ids":[
"2mahmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mahmp"
],
"biocyc":[
"META:AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP"
],
"chebi":[
"CHEBI:16629",
"CHEBI:29079",
"CHEBI:19684",
"CHEBI:20308",
"CHEBI:11612",
"CHEBI:57841",
"CHEBI:11953",
"CHEBI:1194"
],
"inchi_key":[
"AGQJQCFEPUVXNK-UHFFFAOYSA-K"
],
"kegg.compound":[
"C04752"
],
"metanetx.chemical":[
"MNXM1135"
],
"sabiork":[
"1832"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02894"
]
}
},
{
"id":"acgam_p",
"name":"N-Acetyl-D-glucosamine",
"compartment":"p",
"charge":0,
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acgam_p"
]
},
"annotation":{
"bigg.metabolite":[
"acgam"
],
"biocyc":[
"META:N-acetyl-D-glucosamine"
],
"chebi":[
"CHEBI:21517",
"CHEBI:12455",
"CHEBI:506227",
"CHEBI:12563",
"CHEBI:7123",
"CHEBI:17411",
"CHEBI:58134"
],
"hmdb":[
"HMDB62641",
"HMDB00215",
"HMDB14288",
"HMDB00533"
],
"inchi_key":[
"OVRNDRQMDRJTHS-RTRLPJTCSA-N"
],
"kegg.compound":[
"C00140"
],
"metanetx.chemical":[
"MNXM143"
],
"reactome.compound":[
"2162231",
"1678743"
],
"sabiork":[
"95"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27608",
"cpd00122"
]
}
},
{
"id":"4abutn_c",
"name":"4-Aminobutanal",
"compartment":"c",
"charge":1,
"formula":"C4H10NO",
"notes":{
"original_bigg_ids":[
"4abutn_c"
]
},
"annotation":{
"bigg.metabolite":[
"4abutn"
],
"biocyc":[
"META:4-AMINO-BUTYRALDEHYDE"
],
"chebi":[
"CHEBI:11960",
"CHEBI:20316",
"CHEBI:58264",
"CHEBI:17769",
"CHEBI:1785"
],
"hmdb":[
"HMDB60247",
"HMDB01080"
],
"inchi_key":[
"DZQLQEYLEYWJIB-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00555"
],
"metanetx.chemical":[
"MNXM422"
],
"sabiork":[
"2092"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00434",
"cpd12219"
]
}
},
{
"id":"acgam1p_e",
"name":"N-Acetyl-D-glucosamine 1-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acgam1p_e"
]
},
"annotation":{
"bigg.metabolite":[
"acgam1p"
],
"chebi":[
"CHEBI:7125"
],
"hmdb":[
"HMDB01367"
],
"inchi_key":[
"FZLJPEPAYPUMMR-RTRLPJTCSA-L"
],
"kegg.compound":[
"C04256"
],
"metanetx.chemical":[
"MNXM91871"
],
"reactome.compound":[
"532204"
],
"sabiork":[
"1801",
"26400"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02611"
]
}
},
{
"id":"34dhpac_p",
"name":"3,4-Dihydroxyphenylacetaldehyde",
"compartment":"p",
"charge":0,
"formula":"C8H8O3",
"notes":{
"original_bigg_ids":[
"34dhpac_p"
]
},
"annotation":{
"bigg.metabolite":[
"34dhpac"
],
"biocyc":[
"META:34-DIHYDROXYPHENYLACETALDEHYDE"
],
"chebi":[
"CHEBI:19888",
"CHEBI:1385",
"CHEBI:27978"
],
"hmdb":[
"HMDB06778",
"HMDB03791",
"HMDB06256"
],
"inchi_key":[
"IADQVXRMSNIUEL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C04043"
],
"metanetx.chemical":[
"MNXM1401"
],
"sabiork":[
"7037"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02500"
]
}
},
{
"id":"4abut_p",
"name":"4-Aminobutanoate",
"compartment":"p",
"charge":0,
"formula":"C4H9NO2",
"notes":{
"original_bigg_ids":[
"4abut_p"
]
},
"annotation":{
"bigg.metabolite":[
"4abut"
],
"biocyc":[
"META:4-AMINO-BUTYRATE"
],
"chebi":[
"CHEBI:40483",
"CHEBI:20317",
"CHEBI:1786",
"CHEBI:16865",
"CHEBI:30566",
"CHEBI:193777",
"CHEBI:11961",
"CHEBI:59888",
"CHEBI:20318"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e90ecce1-b9b5-49f9-85d9-b83421426cbb"
],
"hmdb":[
"HMDB00112"
],
"inchi_key":[
"BTCSSZJGUNDROE-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00334"
],
"kegg.drug":[
"D00058"
],
"lipidmaps":[
"LMFA01100039"
],
"metanetx.chemical":[
"MNXM192"
],
"reactome.compound":[
"428571",
"352011",
"916850",
"352003"
],
"sabiork":[
"2021"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00281"
]
}
},
{
"id":"34dhpac_e",
"name":"3,4-Dihydroxyphenylacetaldehyde",
"compartment":"e",
"charge":0,
"formula":"C8H8O3",
"notes":{
"original_bigg_ids":[
"34dhpac_e"
]
},
"annotation":{
"bigg.metabolite":[
"34dhpac"
],
"biocyc":[
"META:34-DIHYDROXYPHENYLACETALDEHYDE"
],
"chebi":[
"CHEBI:19888",
"CHEBI:1385",
"CHEBI:27978"
],
"hmdb":[
"HMDB06778",
"HMDB03791",
"HMDB06256"
],
"inchi_key":[
"IADQVXRMSNIUEL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C04043"
],
"metanetx.chemical":[
"MNXM1401"
],
"sabiork":[
"7037"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02500"
]
}
},
{
"id":"acgam_c",
"name":"N-Acetyl-D-glucosamine",
"compartment":"c",
"charge":0,
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acgam_c"
]
},
"annotation":{
"bigg.metabolite":[
"acgam"
],
"biocyc":[
"META:N-acetyl-D-glucosamine"
],
"chebi":[
"CHEBI:21517",
"CHEBI:12455",
"CHEBI:506227",
"CHEBI:12563",
"CHEBI:7123",
"CHEBI:17411",
"CHEBI:58134"
],
"hmdb":[
"HMDB62641",
"HMDB00215",
"HMDB14288",
"HMDB00533"
],
"inchi_key":[
"OVRNDRQMDRJTHS-RTRLPJTCSA-N"
],
"kegg.compound":[
"C00140"
],
"metanetx.chemical":[
"MNXM143"
],
"reactome.compound":[
"2162231",
"1678743"
],
"sabiork":[
"95"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27608",
"cpd00122"
]
}
},
{
"id":"acgam6p_c",
"name":"N-Acetyl-D-glucosamine 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acgam6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"acgam6p"
],
"biocyc":[
"META:CPD-16168",
"META:N-ACETYL-D-GLUCOSAMINE-6-P"
],
"chebi":[
"CHEBI:49353",
"CHEBI:57513",
"CHEBI:49359",
"CHEBI:12456",
"CHEBI:15784",
"CHEBI:21521",
"CHEBI:7127",
"CHEBI:39577",
"CHEBI:12564"
],
"hmdb":[
"HMDB01062",
"HMDB02817"
],
"inchi_key":[
"BRGMHAYQAZFZDJ-RTRLPJTCSA-L"
],
"kegg.compound":[
"C00357"
],
"metanetx.chemical":[
"MNXM63556"
],
"reactome.compound":[
"449703"
],
"sabiork":[
"1676"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00293"
]
}
},
{
"id":"4abut_e",
"name":"4-Aminobutanoate",
"compartment":"e",
"charge":0,
"formula":"C4H9NO2",
"notes":{
"original_bigg_ids":[
"4abut_e"
]
},
"annotation":{
"bigg.metabolite":[
"4abut"
],
"biocyc":[
"META:4-AMINO-BUTYRATE"
],
"chebi":[
"CHEBI:40483",
"CHEBI:20317",
"CHEBI:1786",
"CHEBI:16865",
"CHEBI:30566",
"CHEBI:193777",
"CHEBI:11961",
"CHEBI:59888",
"CHEBI:20318"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e90ecce1-b9b5-49f9-85d9-b83421426cbb"
],
"hmdb":[
"HMDB00112"
],
"inchi_key":[
"BTCSSZJGUNDROE-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00334"
],
"kegg.drug":[
"D00058"
],
"lipidmaps":[
"LMFA01100039"
],
"metanetx.chemical":[
"MNXM192"
],
"reactome.compound":[
"428571",
"352011",
"916850",
"352003"
],
"sabiork":[
"2021"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00281"
]
}
},
{
"id":"3amp_e",
"name":"3  AMP C10H12N5O7P",
"compartment":"e",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"3amp_e"
]
},
"annotation":{
"bigg.metabolite":[
"3amp"
],
"biocyc":[
"META:CPD-3706"
],
"chebi":[
"CHEBI:40872",
"CHEBI:28931",
"CHEBI:60880",
"CHEBI:22241",
"CHEBI:1333"
],
"hmdb":[
"HMDB06550",
"HMDB03540"
],
"inchi_key":[
"LNQVTSROQXJCDD-KQYNXXCUSA-L"
],
"kegg.compound":[
"C01367"
],
"metanetx.chemical":[
"MNXM1985"
],
"sabiork":[
"1715"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00988"
]
}
},
{
"id":"acac_e",
"name":"Acetoacetate",
"compartment":"e",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"acac_e"
]
},
"annotation":{
"bigg.metabolite":[
"acac"
],
"biocyc":[
"META:3-KETOBUTYRATE"
],
"chebi":[
"CHEBI:40507",
"CHEBI:131367",
"CHEBI:15344",
"CHEBI:13705",
"CHEBI:2391",
"CHEBI:22172"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/924da7cc-7d56-4de8-8fc5-6750e564b19d",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/fb4f33dd-4427-4324-bdc3-c9e1f3655a36",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/c0d6192a-b52c-4bd4-a5ef-f1b459bc5a3f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/1d5be1e0-4890-4396-a3bf-af5789c697c6",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6fdb8e86-869c-43e6-a53f-5be3d9719096"
],
"hmdb":[
"HMDB00060"
],
"inchi_key":[
"WDJHALXBUFZDSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00164"
],
"lipidmaps":[
"LMFA01060003"
],
"metanetx.chemical":[
"MNXM154"
],
"reactome.compound":[
"73909",
"29666"
],
"sabiork":[
"1956"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00142"
]
}
},
{
"id":"3cmp_e",
"name":"3  CMP C9H12N3O8P",
"compartment":"e",
"charge":-2,
"formula":"C9H12N3O8P",
"notes":{
"original_bigg_ids":[
"3cmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"3cmp"
],
"biocyc":[
"META:CPD-3711"
],
"chebi":[
"CHEBI:28929",
"CHEBI:53013",
"CHEBI:41615",
"CHEBI:41345",
"CHEBI:1335",
"CHEBI:60875",
"CHEBI:23517"
],
"inchi_key":[
"UOOOPKANIPLQPU-XVFCMESISA-L"
],
"kegg.compound":[
"C05822"
],
"metanetx.chemical":[
"MNXM2182"
],
"sabiork":[
"1848"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03454"
]
}
},
{
"id":"udcpp_c",
"name":"Undecaprenyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C55H89O4P",
"notes":{
"original_bigg_ids":[
"udcpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpp"
],
"biocyc":[
"META:UNDECAPRENYL-P"
],
"chebi":[
"CHEBI:15286",
"CHEBI:57654",
"CHEBI:15285",
"CHEBI:9864",
"CHEBI:16141"
],
"inchi_key":[
"UFPHFKCTOZIAFY-RDQGWRCRSA-L"
],
"kegg.compound":[
"C00348"
],
"lipidmaps":[
"LMPR03020006"
],
"metanetx.chemical":[
"MNXM251"
],
"sabiork":[
"2026"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00286"
]
}
},
{
"id":"acac_p",
"name":"Acetoacetate",
"compartment":"p",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"acac_p"
]
},
"annotation":{
"bigg.metabolite":[
"acac"
],
"biocyc":[
"META:3-KETOBUTYRATE"
],
"chebi":[
"CHEBI:40507",
"CHEBI:131367",
"CHEBI:15344",
"CHEBI:13705",
"CHEBI:2391",
"CHEBI:22172"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/924da7cc-7d56-4de8-8fc5-6750e564b19d",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/fb4f33dd-4427-4324-bdc3-c9e1f3655a36",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/c0d6192a-b52c-4bd4-a5ef-f1b459bc5a3f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/1d5be1e0-4890-4396-a3bf-af5789c697c6",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6fdb8e86-869c-43e6-a53f-5be3d9719096"
],
"hmdb":[
"HMDB00060"
],
"inchi_key":[
"WDJHALXBUFZDSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00164"
],
"lipidmaps":[
"LMFA01060003"
],
"metanetx.chemical":[
"MNXM154"
],
"reactome.compound":[
"73909",
"29666"
],
"sabiork":[
"1956"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00142"
]
}
},
{
"id":"uacgam_c",
"name":"UDP-N-acetyl-D-glucosamine",
"compartment":"c",
"charge":-2,
"formula":"C17H25N3O17P2",
"notes":{
"original_bigg_ids":[
"uacgam_c"
]
},
"annotation":{
"bigg.metabolite":[
"uacgam"
],
"biocyc":[
"META:UDP-N-ACETYL-D-GLUCOSAMINE"
],
"chebi":[
"CHEBI:13473",
"CHEBI:22115",
"CHEBI:9823",
"CHEBI:13475",
"CHEBI:13456",
"CHEBI:13476",
"CHEBI:46243",
"CHEBI:57705",
"CHEBI:46287",
"CHEBI:16264"
],
"hmdb":[
"HMDB00290",
"HMDB62760"
],
"inchi_key":[
"LFTYTUAZOPRMMI-CFRASDGPSA-L"
],
"kegg.compound":[
"C00043"
],
"kegg.glycan":[
"G10610"
],
"lipidmaps":[
"LMSL01010002"
],
"metanetx.chemical":[
"MNXM47"
],
"reactome.compound":[
"162756",
"914003",
"3499326"
],
"sabiork":[
"1925"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00037"
]
}
},
{
"id":"3gmp_e",
"name":"Guanosine 3  phosphate C10H12N5O8P",
"compartment":"e",
"charge":-2,
"formula":"C10H12N5O8P",
"notes":{
"original_bigg_ids":[
"3gmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"3gmp"
],
"biocyc":[
"META:CPD-3708"
],
"chebi":[
"CHEBI:5567",
"CHEBI:24447",
"CHEBI:60732",
"CHEBI:28072",
"CHEBI:39948",
"CHEBI:42888"
],
"inchi_key":[
"ZDPUTNZENXVHJC-UUOKFMHZSA-L"
],
"kegg.compound":[
"C06193"
],
"metanetx.chemical":[
"MNXM2183"
],
"sabiork":[
"1857"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03701"
]
}
},
{
"id":"accoa_c",
"name":"Acetyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C23H34N7O17P3S",
"notes":{
"original_bigg_ids":[
"accoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"accoa"
],
"biocyc":[
"META:ACETYL-COA"
],
"chebi":[
"CHEBI:57288",
"CHEBI:22192",
"CHEBI:15351",
"CHEBI:13712",
"CHEBI:2408",
"CHEBI:40470"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/57bd5e24-9d14-4b91-bc60-64c8ea6c2d11"
],
"hmdb":[
"HMDB01206"
],
"inchi_key":[
"ZSLZBFCDCINBPY-ZSJPKINUSA-J"
],
"kegg.compound":[
"C00024"
],
"lipidmaps":[
"LMFA07050029",
"LMFA07050281"
],
"metanetx.chemical":[
"MNXM21"
],
"reactome.compound":[
"727753",
"76183",
"113560",
"353123",
"113559"
],
"sabiork":[
"1276"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00022"
],
"slm":[
"000000297"
]
}
},
{
"id":"3hdecACP_c",
"name":"(R)-3-Hydroxydecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C394H621O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hdecACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hdecACP"
],
"biocyc":[
"META:Beta-hydroxydecanoyl-ACPs"
],
"kegg.compound":[
"C04619"
],
"metanetx.chemical":[
"MNXM7127"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11482"
]
}
},
{
"id":"ump_c",
"name":"UMP C9H11N2O9P",
"compartment":"c",
"charge":-2,
"formula":"C9H11N2O9P",
"notes":{
"original_bigg_ids":[
"ump_c"
]
},
"annotation":{
"bigg.metabolite":[
"ump"
],
"biocyc":[
"META:UMP"
],
"chebi":[
"CHEBI:47721",
"CHEBI:9849",
"CHEBI:27231",
"CHEBI:46382",
"CHEBI:16695",
"CHEBI:13509",
"CHEBI:13508",
"CHEBI:46385",
"CHEBI:57865",
"CHEBI:46362"
],
"hmdb":[
"HMDB00288"
],
"inchi_key":[
"DJJCXFVJDGTHFX-XVFCMESISA-L"
],
"kegg.compound":[
"C00105"
],
"metanetx.chemical":[
"MNXM80"
],
"reactome.compound":[
"735698",
"109402"
],
"sabiork":[
"1300",
"25061"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00091"
]
}
},
{
"id":"unaga_c",
"name":"Undecaprenyl diphospho N-acetyl-glucosamine",
"compartment":"c",
"charge":-2,
"formula":"C63H103NO12P2",
"notes":{
"original_bigg_ids":[
"unaga_c"
]
},
"annotation":{
"bigg.metabolite":[
"unaga"
],
"biocyc":[
"META:ACETYL-D-GLUCOSAMINYLDIPHOSPHO-UNDECAPRE"
],
"chebi":[
"CHEBI:62958",
"CHEBI:62959"
],
"inchi_key":[
"NEVJGTXBHJNFAZ-JXCMATCVSA-L"
],
"kegg.compound":[
"C01289"
],
"metanetx.chemical":[
"MNXM1333"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00946"
]
}
},
{
"id":"coa_c",
"name":"Coenzyme A",
"compartment":"c",
"charge":-4,
"formula":"C21H32N7O16P3S",
"notes":{
"original_bigg_ids":[
"coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"coa"
],
"biocyc":[
"META:COA-GROUP",
"META:CO-A"
],
"chebi":[
"CHEBI:41631",
"CHEBI:41597",
"CHEBI:741566",
"CHEBI:23355",
"CHEBI:13295",
"CHEBI:13298",
"CHEBI:57287",
"CHEBI:15346",
"CHEBI:3771",
"CHEBI:13294"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/19310484-6aa5-4dcf-b1da-855a8c21ecfd"
],
"hmdb":[
"HMDB01423",
"HMDB62184"
],
"inchi_key":[
"RGJOEKWQDUBAIZ-IBOSZNHHSA-J"
],
"kegg.compound":[
"C00010"
],
"metanetx.chemical":[
"MNXM12"
],
"reactome.compound":[
"193514",
"162743",
"2485002",
"1678675",
"29374",
"76194",
"8939024"
],
"sabiork":[
"1265"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22528",
"cpd00010"
]
}
},
{
"id":"tdec2eACP_c",
"name":"Trans-Dec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C394H619O143N96P1S3",
"notes":{
"original_bigg_ids":[
"tdec2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tdec2eACP"
],
"chebi":[
"CHEBI:10724"
],
"kegg.compound":[
"C05754"
],
"lipidmaps":[
"LMFA07060012"
],
"metanetx.chemical":[
"MNXM28221"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11475"
]
}
},
{
"id":"acald_c",
"name":"Acetaldehyde",
"compartment":"c",
"charge":0,
"formula":"C2H4O",
"notes":{
"original_bigg_ids":[
"acald_c"
]
},
"annotation":{
"bigg.metabolite":[
"acald"
],
"biocyc":[
"META:ACETALD"
],
"chebi":[
"CHEBI:40533",
"CHEBI:13703",
"CHEBI:2383",
"CHEBI:22158",
"CHEBI:15343"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/9c8865b2-a99d-42e4-a042-c88504f04b51",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/47aa8e53-36ae-4be3-987c-c1cfab66af78",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ee2c714d-ff9d-4df8-b343-48c1ec76ef0e",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/78f3645f-408e-4001-9dda-a52ea62a15d4"
],
"hmdb":[
"HMDB00990"
],
"inchi_key":[
"IKHGUXGNUITLKF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00084"
],
"metanetx.chemical":[
"MNXM75"
],
"reactome.compound":[
"113532",
"29510",
"113681",
"113745"
],
"sabiork":[
"1292"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00071"
]
}
},
{
"id":"3hddecACP_c",
"name":"(R)-3-Hydroxydodecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C396H625O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hddecACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hddecACP"
],
"chebi":[
"CHEBI:325"
],
"kegg.compound":[
"C05757"
],
"lipidmaps":[
"LMFA07060015"
],
"metanetx.chemical":[
"MNXM27066"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11480"
]
}
},
{
"id":"pyr_c",
"name":"Pyruvate",
"compartment":"c",
"charge":-1,
"formula":"C3H3O3",
"notes":{
"original_bigg_ids":[
"pyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"pyr"
],
"biocyc":[
"META:PYRUVATE"
],
"chebi":[
"CHEBI:26462",
"CHEBI:26466",
"CHEBI:8685",
"CHEBI:32816",
"CHEBI:45253",
"CHEBI:14987",
"CHEBI:15361"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ccc99777-54dc-42d4-a97e-009b780d3905",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc01020e-8c7e-4087-9f56-cf8c962b7437"
],
"hmdb":[
"HMDB00243"
],
"inchi_key":[
"LCTONWCANYUPML-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00022"
],
"lipidmaps":[
"LMFA01060077"
],
"metanetx.chemical":[
"MNXM23"
],
"reactome.compound":[
"1130930",
"5357717",
"113557",
"29398",
"389680"
],
"sabiork":[
"33"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00020"
]
}
},
{
"id":"acald_e",
"name":"Acetaldehyde",
"compartment":"e",
"charge":0,
"formula":"C2H4O",
"notes":{
"original_bigg_ids":[
"acald_e"
]
},
"annotation":{
"bigg.metabolite":[
"acald"
],
"biocyc":[
"META:ACETALD"
],
"chebi":[
"CHEBI:40533",
"CHEBI:13703",
"CHEBI:2383",
"CHEBI:22158",
"CHEBI:15343"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/9c8865b2-a99d-42e4-a042-c88504f04b51",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/47aa8e53-36ae-4be3-987c-c1cfab66af78",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ee2c714d-ff9d-4df8-b343-48c1ec76ef0e",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/78f3645f-408e-4001-9dda-a52ea62a15d4"
],
"hmdb":[
"HMDB00990"
],
"inchi_key":[
"IKHGUXGNUITLKF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00084"
],
"metanetx.chemical":[
"MNXM75"
],
"reactome.compound":[
"113532",
"29510",
"113681",
"113745"
],
"sabiork":[
"1292"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00071"
]
}
},
{
"id":"pep_c",
"name":"Phosphoenolpyruvate",
"compartment":"c",
"charge":-3,
"formula":"C3H2O6P",
"notes":{
"original_bigg_ids":[
"pep_c"
]
},
"annotation":{
"bigg.metabolite":[
"pep"
],
"biocyc":[
"META:PHOSPHO-ENOL-PYRUVATE"
],
"chebi":[
"CHEBI:18021",
"CHEBI:44894",
"CHEBI:26054",
"CHEBI:14812",
"CHEBI:26055",
"CHEBI:8147",
"CHEBI:58702",
"CHEBI:44897"
],
"hmdb":[
"HMDB00263"
],
"inchi_key":[
"DTBNBXWJWCWCIK-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00074"
],
"metanetx.chemical":[
"MNXM73"
],
"reactome.compound":[
"372364",
"29492"
],
"sabiork":[
"32"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00061"
]
}
},
{
"id":"tddec2eACP_c",
"name":"Trans-Dodec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C396H623O143N96P1S3",
"notes":{
"original_bigg_ids":[
"tddec2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tddec2eACP"
],
"biocyc":[
"META:Dodec-2-enoyl-ACPs"
],
"chebi":[
"CHEBI:10725"
],
"kegg.compound":[
"C05758"
],
"lipidmaps":[
"LMFA07060016"
],
"metanetx.chemical":[
"MNXM23842"
],
"sabiork":[
"8118"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11469"
]
}
},
{
"id":"acald_p",
"name":"Acetaldehyde",
"compartment":"p",
"charge":0,
"formula":"C2H4O",
"notes":{
"original_bigg_ids":[
"acald_p"
]
},
"annotation":{
"bigg.metabolite":[
"acald"
],
"biocyc":[
"META:ACETALD"
],
"chebi":[
"CHEBI:40533",
"CHEBI:13703",
"CHEBI:2383",
"CHEBI:22158",
"CHEBI:15343"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/9c8865b2-a99d-42e4-a042-c88504f04b51",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/47aa8e53-36ae-4be3-987c-c1cfab66af78",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ee2c714d-ff9d-4df8-b343-48c1ec76ef0e",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/78f3645f-408e-4001-9dda-a52ea62a15d4"
],
"hmdb":[
"HMDB00990"
],
"inchi_key":[
"IKHGUXGNUITLKF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00084"
],
"metanetx.chemical":[
"MNXM75"
],
"reactome.compound":[
"113532",
"29510",
"113681",
"113745"
],
"sabiork":[
"1292"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00071"
]
}
},
{
"id":"t3c5ddeceACP_c",
"name":"Trans-3-cis-5-dodecenoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C396H621O143N96P1S3",
"notes":{
"original_bigg_ids":[
"t3c5ddeceACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"t3c5ddeceACP"
],
"metanetx.chemical":[
"MNXM5959"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15569"
]
}
},
{
"id":"acgam_e",
"name":"N-Acetyl-D-glucosamine",
"compartment":"e",
"charge":0,
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acgam_e"
]
},
"annotation":{
"bigg.metabolite":[
"acgam"
],
"biocyc":[
"META:N-acetyl-D-glucosamine"
],
"chebi":[
"CHEBI:21517",
"CHEBI:12455",
"CHEBI:506227",
"CHEBI:12563",
"CHEBI:7123",
"CHEBI:17411",
"CHEBI:58134"
],
"hmdb":[
"HMDB62641",
"HMDB00215",
"HMDB14288",
"HMDB00533"
],
"inchi_key":[
"OVRNDRQMDRJTHS-RTRLPJTCSA-N"
],
"kegg.compound":[
"C00140"
],
"metanetx.chemical":[
"MNXM143"
],
"reactome.compound":[
"2162231",
"1678743"
],
"sabiork":[
"95"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27608",
"cpd00122"
]
}
},
{
"id":"adocbip_c",
"name":"Adenosyl cobinamide phosphate",
"compartment":"c",
"charge":-1,
"formula":"C58H83CoN16O14P",
"notes":{
"original_bigg_ids":[
"adocbip_c"
]
},
"annotation":{
"bigg.metabolite":[
"adocbip"
],
"biocyc":[
"META:ADENOSYLCOBINAMIDE-P"
],
"chebi":[
"CHEBI:2481",
"CHEBI:58502"
],
"hmdb":[
"HMDB12184"
],
"inchi_key":[
"MQCMBMUJJHSGIF-QMUWONGRSA-K"
],
"kegg.compound":[
"C06509"
],
"metanetx.chemical":[
"MNXM856"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03919"
]
}
},
{
"id":"acglu_c",
"name":"N-Acetyl-L-glutamate",
"compartment":"c",
"charge":-2,
"formula":"C7H9NO5",
"notes":{
"original_bigg_ids":[
"acglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"acglu"
],
"biocyc":[
"META:ACETYL-GLU"
],
"chebi":[
"CHEBI:7150",
"CHEBI:17533",
"CHEBI:44337",
"CHEBI:44335",
"CHEBI:21549",
"CHEBI:87274",
"CHEBI:64040",
"CHEBI:12575",
"CHEBI:21552"
],
"inchi_key":[
"RFMMMVDNIPUKGG-YFKPBYRVSA-L"
],
"kegg.compound":[
"C00624"
],
"metanetx.chemical":[
"MNXM730"
],
"reactome.compound":[
"30471"
],
"sabiork":[
"2120"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00477"
]
}
},
{
"id":"3hcddec5eACP_c",
"name":"(R)-3-hydroxy-cis-dodec-5-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C396H623O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hcddec5eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hcddec5eACP"
],
"metanetx.chemical":[
"MNXM5389"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15366"
]
}
},
{
"id":"agdpcbi_c",
"name":"Adenosine-GDP-cobinamide",
"compartment":"c",
"charge":-1,
"formula":"C68H95CoN21O21P2",
"notes":{
"original_bigg_ids":[
"agdpcbi_c"
]
},
"annotation":{
"bigg.metabolite":[
"agdpcbi"
],
"biocyc":[
"META:ADENOSYLCOBINAMIDE-GDP"
],
"chebi":[
"CHEBI:2479",
"CHEBI:60487"
],
"hmdb":[
"HMDB12185"
],
"inchi_key":[
"IQTYKHRKNGVJEO-RRMAJTJESA-K"
],
"kegg.compound":[
"C06510"
],
"metanetx.chemical":[
"MNXM1105"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03920"
]
}
},
{
"id":"tmrs2eACP_c",
"name":"Trans-Tetradec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C398H627O143N96P1S3",
"notes":{
"original_bigg_ids":[
"tmrs2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tmrs2eACP"
],
"biocyc":[
"META:Tetradec-2-enoyl-ACPs"
],
"chebi":[
"CHEBI:10735"
],
"kegg.compound":[
"C05760"
],
"lipidmaps":[
"LMFA07060018"
],
"metanetx.chemical":[
"MNXM24297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11467"
]
}
},
{
"id":"acg5p_c",
"name":"N-Acetyl-L-glutamyl 5-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C7H9NO8P",
"notes":{
"original_bigg_ids":[
"acg5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"acg5p"
],
"biocyc":[
"META:N-ACETYL-GLUTAMYL-P"
],
"chebi":[
"CHEBI:21550",
"CHEBI:12576",
"CHEBI:16878",
"CHEBI:12441",
"CHEBI:7151",
"CHEBI:57936"
],
"hmdb":[
"HMDB06456"
],
"inchi_key":[
"FCVIHFVSXHOPSW-YFKPBYRVSA-K"
],
"kegg.compound":[
"C04133"
],
"metanetx.chemical":[
"MNXM1384"
],
"sabiork":[
"1790"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02552"
]
}
},
{
"id":"2ahbut_c",
"name":"(S)-2-Aceto-2-hydroxybutanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O4",
"notes":{
"original_bigg_ids":[
"2ahbut_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ahbut"
],
"biocyc":[
"META:2-ACETO-2-HYDROXY-BUTYRATE"
],
"chebi":[
"CHEBI:27681",
"CHEBI:49256",
"CHEBI:18730",
"CHEBI:373"
],
"hmdb":[
"HMDB06854",
"HMDB06900"
],
"inchi_key":[
"VUQLHQFKACOHNZ-LURJTMIESA-M"
],
"kegg.compound":[
"C06006"
],
"lipidmaps":[
"LMFA01050383"
],
"metanetx.chemical":[
"MNXM114220"
],
"sabiork":[
"2852"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19045"
]
}
},
{
"id":"camp_c",
"name":"CAMP C10H11N5O6P",
"compartment":"c",
"charge":-1,
"formula":"C10H11N5O6P",
"notes":{
"original_bigg_ids":[
"camp_c"
]
},
"annotation":{
"bigg.metabolite":[
"camp"
],
"biocyc":[
"META:CAMP"
],
"chebi":[
"CHEBI:19827",
"CHEBI:11673",
"CHEBI:1325",
"CHEBI:17489",
"CHEBI:58165",
"CHEBI:41588"
],
"hmdb":[
"HMDB00058"
],
"inchi_key":[
"IVOMOUWHDPKRLL-KQYNXXCUSA-M"
],
"kegg.compound":[
"C00575"
],
"metanetx.chemical":[
"MNXM243"
],
"reactome.compound":[
"30389"
],
"sabiork":[
"1379"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00446"
]
}
},
{
"id":"2obut_c",
"name":"2-Oxobutanoate",
"compartment":"c",
"charge":-1,
"formula":"C4H5O3",
"notes":{
"original_bigg_ids":[
"2obut_c"
]
},
"annotation":{
"bigg.metabolite":[
"2obut"
],
"biocyc":[
"META:2-OXOBUTANOATE"
],
"chebi":[
"CHEBI:1250",
"CHEBI:16763",
"CHEBI:19741",
"CHEBI:30831",
"CHEBI:11636",
"CHEBI:39748",
"CHEBI:19743"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1d8dba15-23b7-4916-91ba-3b00be5e4e8b",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/86a149cf-c031-463b-aa33-253fcbde268f"
],
"hmdb":[
"HMDB00005",
"HMDB06544"
],
"inchi_key":[
"TYEYBOSBBBHJIV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00109"
],
"lipidmaps":[
"LMFA01060002"
],
"metanetx.chemical":[
"MNXM159"
],
"reactome.compound":[
"936714"
],
"sabiork":[
"1934"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00094"
]
}
},
{
"id":"ac_c",
"name":"Acetate",
"compartment":"c",
"charge":-1,
"formula":"C2H3O2",
"notes":{
"original_bigg_ids":[
"ac_c"
]
},
"annotation":{
"bigg.metabolite":[
"ac"
],
"biocyc":[
"META:ACET"
],
"chebi":[
"CHEBI:13704",
"CHEBI:22165",
"CHEBI:22169",
"CHEBI:40480",
"CHEBI:15366",
"CHEBI:2387",
"CHEBI:30089",
"CHEBI:40486"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/9e26dcbe-4db9-46a0-8614-9f03545032d2",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/5e4989fc-13d3-45d4-ad57-3be380a9d3c0",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a8f0be58-24e8-441b-8d81-a516a0ead4b3",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/d45256fe-61fa-4f5b-bb16-91a3d615e3d8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/3e2d750f-df31-4445-9255-163c627e9b4a"
],
"hmdb":[
"HMDB00042"
],
"inchi_key":[
"QTBSBXVTEAMEQO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00033"
],
"kegg.drug":[
"D00010"
],
"lipidmaps":[
"LMFA01010002"
],
"metanetx.chemical":[
"MNXM26"
],
"reactome.compound":[
"1524044",
"390305",
"113539",
"2022890",
"29416"
],
"sabiork":[
"1278"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00029"
],
"slm":[
"000000449"
]
}
},
{
"id":"3hmrsACP_c",
"name":"(R)-3-Hydroxytetradecanoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C398H629O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hmrsACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hmrsACP"
],
"biocyc":[
"META:R-3-hydroxymyristoyl-ACPs"
],
"kegg.compound":[
"C04688"
],
"metanetx.chemical":[
"MNXM7733"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11484"
]
}
},
{
"id":"t3c7mrseACP_c",
"name":"Trans-3-cis-7-myristoleoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C398H625O143N96P1S3",
"notes":{
"original_bigg_ids":[
"t3c7mrseACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"t3c7mrseACP"
],
"metanetx.chemical":[
"MNXM5960"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15570"
]
}
},
{
"id":"3hcmrs7eACP_c",
"name":"(R)-3-hydroxy-cis-myristol-7-eoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C398H627O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hcmrs7eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hcmrs7eACP"
],
"metanetx.chemical":[
"MNXM5390"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15368"
]
}
},
{
"id":"rib__D_c",
"name":"D-Ribose",
"compartment":"c",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"rib_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"rib__D"
],
"biocyc":[
"META:D-Ribofuranose",
"META:D-Ribopyranose"
],
"chebi":[
"CHEBI:13011",
"CHEBI:16988",
"CHEBI:46999",
"CHEBI:47013",
"CHEBI:47006",
"CHEBI:4233",
"CHEBI:21078"
],
"hmdb":[
"HMDB00283"
],
"inchi_key":[
"HMFHBZSHGGEWLO-SOOFDHNKSA-N"
],
"kegg.compound":[
"C21057",
"C00121"
],
"metanetx.chemical":[
"MNXM242"
],
"sabiork":[
"1653"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00105"
]
}
},
{
"id":"3hpalmACP_c",
"name":"R-3-hydroxypalmitoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C400H633O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hpalmACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hpalmACP"
],
"kegg.compound":[
"C04633"
],
"metanetx.chemical":[
"MNXM2576"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11481"
]
}
},
{
"id":"actp_c",
"name":"Acetyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C2H3O5P",
"notes":{
"original_bigg_ids":[
"actp_c"
]
},
"annotation":{
"bigg.metabolite":[
"actp"
],
"biocyc":[
"META:ACETYL-P"
],
"chebi":[
"CHEBI:13711",
"CHEBI:46262",
"CHEBI:15350",
"CHEBI:22191",
"CHEBI:2407"
],
"hmdb":[
"HMDB01494"
],
"inchi_key":[
"LIPOUNRJVLNBCD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00227"
],
"metanetx.chemical":[
"MNXM280"
],
"sabiork":[
"1316"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00196"
]
}
},
{
"id":"adn_e",
"name":"Adenosine",
"compartment":"e",
"charge":0,
"formula":"C10H13N5O4",
"notes":{
"original_bigg_ids":[
"adn_e"
]
},
"annotation":{
"bigg.metabolite":[
"adn"
],
"biocyc":[
"META:ADENOSINE"
],
"chebi":[
"CHEBI:22237",
"CHEBI:13734",
"CHEBI:40558",
"CHEBI:16335",
"CHEBI:40906",
"CHEBI:40911",
"CHEBI:40825",
"CHEBI:2472"
],
"hmdb":[
"HMDB04402",
"HMDB00050",
"HMDB04421",
"HMDB04401"
],
"inchi_key":[
"OIRDTQYFTABQOQ-KQYNXXCUSA-N"
],
"kegg.compound":[
"C00212"
],
"kegg.drug":[
"D00045"
],
"metanetx.chemical":[
"MNXM212"
],
"reactome.compound":[
"83908",
"83909",
"8857850"
],
"sabiork":[
"1402"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00182"
]
}
},
{
"id":"alac__S_c",
"name":"(S)-2-Acetolactate",
"compartment":"c",
"charge":-1,
"formula":"C5H7O4",
"notes":{
"original_bigg_ids":[
"alac_S_c"
]
},
"annotation":{
"bigg.metabolite":[
"alac__S"
],
"biocyc":[
"META:2-ACETO-LACTATE"
],
"chebi":[
"CHEBI:11033",
"CHEBI:374",
"CHEBI:18409",
"CHEBI:18731",
"CHEBI:58476"
],
"hmdb":[
"HMDB06855"
],
"inchi_key":[
"NMDWGEGFJUBKLB-YFKPBYRVSA-M"
],
"kegg.compound":[
"C06010"
],
"lipidmaps":[
"LMFA01050460"
],
"metanetx.chemical":[
"MNXM114079"
],
"sabiork":[
"2855"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19047"
]
}
},
{
"id":"tpalm2eACP_c",
"name":"Trans-Hexadec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C400H631O143N96P1S3",
"notes":{
"original_bigg_ids":[
"tpalm2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"tpalm2eACP"
],
"biocyc":[
"META:2-Hexadecenoyl-ACPs"
],
"chebi":[
"CHEBI:10729"
],
"kegg.compound":[
"C05763"
],
"lipidmaps":[
"LMFA07060020"
],
"metanetx.chemical":[
"MNXM29072"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11477"
]
}
},
{
"id":"adocbl_p",
"name":"Adenosylcobalamin",
"compartment":"p",
"charge":0,
"formula":"C72H100CoN18O17P",
"notes":{
"original_bigg_ids":[
"adocbl_p"
]
},
"annotation":{
"bigg.metabolite":[
"adocbl"
],
"biocyc":[
"META:ADENOSYLCOBALAMIN"
],
"hmdb":[
"HMDB02086"
],
"inchi_key":[
"ZIHHMGTYZOSFRC-QRVZQHAISA-N"
],
"kegg.compound":[
"C00194"
],
"kegg.drug":[
"D00042"
],
"metanetx.chemical":[
"MNXM90703"
],
"reactome.compound":[
"3159297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00166"
]
}
},
{
"id":"t3c9palmeACP_c",
"name":"Trans-3-cis-9-palmitoleoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C400H629O143N96P1S3",
"notes":{
"original_bigg_ids":[
"t3c9palmeACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"t3c9palmeACP"
],
"metanetx.chemical":[
"MNXM5961"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15571"
]
}
},
{
"id":"acmum6p_c",
"name":"N-acetylmuramate 6-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C11H17NO11P",
"notes":{
"original_bigg_ids":[
"acmum6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"acmum6p"
],
"chebi":[
"CHEBI:47968",
"CHEBI:58722"
],
"inchi_key":[
"NMEMTQKUEVNSPV-MKFCKLDKSA-K"
],
"kegg.compound":[
"C16698"
],
"metanetx.chemical":[
"MNXM90332"
],
"sabiork":[
"28082"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15391"
]
}
},
{
"id":"adocbl_c",
"name":"Adenosylcobalamin",
"compartment":"c",
"charge":0,
"formula":"C72H100CoN18O17P",
"notes":{
"original_bigg_ids":[
"adocbl_c"
]
},
"annotation":{
"bigg.metabolite":[
"adocbl"
],
"biocyc":[
"META:ADENOSYLCOBALAMIN"
],
"hmdb":[
"HMDB02086"
],
"inchi_key":[
"ZIHHMGTYZOSFRC-QRVZQHAISA-N"
],
"kegg.compound":[
"C00194"
],
"kegg.drug":[
"D00042"
],
"metanetx.chemical":[
"MNXM90703"
],
"reactome.compound":[
"3159297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00166"
]
}
},
{
"id":"3hcpalm9eACP_c",
"name":"(R)-3-hydroxy-cis-palm-9-eoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C400H631O144N96P1S3",
"notes":{
"original_bigg_ids":[
"3hcpalm9eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hcpalm9eACP"
],
"metanetx.chemical":[
"MNXM6556"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15369"
]
}
},
{
"id":"toctd2eACP_c",
"name":"Trans-octadec-2-enoyl-[acyl-carrier protein]",
"compartment":"c",
"charge":-1,
"formula":"C402H635O143N96P1S3",
"notes":{
"original_bigg_ids":[
"toctd2eACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"toctd2eACP"
],
"biocyc":[
"META:Octadec-2-enoyl-ACPs"
],
"chebi":[
"CHEBI:80388"
],
"kegg.compound":[
"C16221"
],
"metanetx.chemical":[
"MNXM2573"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14940",
"cpd15572"
]
}
},
{
"id":"lac__D_c",
"name":"D-Lactate",
"compartment":"c",
"charge":-1,
"formula":"C3H5O3",
"notes":{
"original_bigg_ids":[
"lac_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"lac__D"
],
"biocyc":[
"META:D-LACTATE"
],
"chebi":[
"CHEBI:16004",
"CHEBI:341",
"CHEBI:18684",
"CHEBI:43701",
"CHEBI:11001",
"CHEBI:42111",
"CHEBI:42105"
],
"hmdb":[
"HMDB01311",
"HMDB00171"
],
"inchi_key":[
"JVTAAEKCZFNVCJ-UWTATZPHSA-M"
],
"kegg.compound":[
"C00256"
],
"metanetx.chemical":[
"MNXM285"
],
"sabiork":[
"1997",
"2284"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00221"
]
}
},
{
"id":"adocbl_e",
"name":"Adenosylcobalamin",
"compartment":"e",
"charge":0,
"formula":"C72H100CoN18O17P",
"notes":{
"original_bigg_ids":[
"adocbl_e"
]
},
"annotation":{
"bigg.metabolite":[
"adocbl"
],
"biocyc":[
"META:ADENOSYLCOBALAMIN"
],
"hmdb":[
"HMDB02086"
],
"inchi_key":[
"ZIHHMGTYZOSFRC-QRVZQHAISA-N"
],
"kegg.compound":[
"C00194"
],
"kegg.drug":[
"D00042"
],
"metanetx.chemical":[
"MNXM90703"
],
"reactome.compound":[
"3159297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00166"
]
}
},
{
"id":"udp_c",
"name":"UDP C9H11N2O12P2",
"compartment":"c",
"charge":-3,
"formula":"C9H11N2O12P2",
"notes":{
"original_bigg_ids":[
"udp_c"
]
},
"annotation":{
"bigg.metabolite":[
"udp"
],
"biocyc":[
"META:UDP"
],
"chebi":[
"CHEBI:13445",
"CHEBI:9802",
"CHEBI:58223",
"CHEBI:46402",
"CHEBI:17659",
"CHEBI:27230"
],
"hmdb":[
"HMDB00295"
],
"inchi_key":[
"XCCTYIAWTASOJW-XVFCMESISA-K"
],
"kegg.compound":[
"C00015"
],
"kegg.glycan":[
"G10619"
],
"metanetx.chemical":[
"MNXM17"
],
"reactome.compound":[
"110096",
"111814",
"205687",
"158602"
],
"sabiork":[
"1269"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00014"
]
}
},
{
"id":"r5p_c",
"name":"Alpha-D-Ribose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"r5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"r5p"
],
"biocyc":[
"META:CPD-15318"
],
"chebi":[
"CHEBI:18189",
"CHEBI:22413",
"CHEBI:12331",
"CHEBI:10270"
],
"inchi_key":[
"KTVPXOYAKDPRHY-AIHAYLRMSA-L"
],
"kegg.compound":[
"C03736"
],
"metanetx.chemical":[
"MNXM15900"
],
"sabiork":[
"1473"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19028"
]
}
},
{
"id":"unagamu_c",
"name":"Undecaprenyl-diphospho-N-acetylglucosamine-N-acetylmannosaminuronate",
"compartment":"c",
"charge":-3,
"formula":"C71H113N2O18P2",
"notes":{
"original_bigg_ids":[
"unagamu_c"
]
},
"annotation":{
"bigg.metabolite":[
"unagamu"
],
"biocyc":[
"META:C55-PP-GLCNAC-MANNACA"
],
"chebi":[
"CHEBI:62960",
"CHEBI:61561",
"CHEBI:61495"
],
"hmdb":[
"HMDB12306"
],
"inchi_key":[
"IGGGNUSEBUZFTR-YETNCWQZSA-K"
],
"kegg.compound":[
"C20497"
],
"metanetx.chemical":[
"MNXM2504"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15581"
]
}
},
{
"id":"8aonn_c",
"name":"8-Amino-7-oxononanoate",
"compartment":"c",
"charge":0,
"formula":"C9H17NO3",
"notes":{
"original_bigg_ids":[
"8aonn_c"
]
},
"annotation":{
"bigg.metabolite":[
"8aonn"
],
"biocyc":[
"META:8-AMINO-7-OXONONANOATE"
],
"chebi":[
"CHEBI:57532",
"CHEBI:15830",
"CHEBI:12266",
"CHEBI:20808",
"CHEBI:2308"
],
"hmdb":[
"HMDB37790"
],
"inchi_key":[
"GUAHPAJOXVYFON-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01092"
],
"lipidmaps":[
"LMFA01100058",
"LMFA01060168"
],
"metanetx.chemical":[
"MNXM1141"
],
"sabiork":[
"5387"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00800"
]
}
},
{
"id":"adprib_c",
"name":"ADPribose C15H21N5O14P2",
"compartment":"c",
"charge":-2,
"formula":"C15H21N5O14P2",
"notes":{
"original_bigg_ids":[
"adprib_c"
]
},
"annotation":{
"bigg.metabolite":[
"adprib"
],
"biocyc":[
"META:ADENOSINE_DIPHOSPHATE_RIBOSE"
],
"chebi":[
"CHEBI:20850",
"CHEBI:16960",
"CHEBI:13231",
"CHEBI:40752",
"CHEBI:2351",
"CHEBI:57967",
"CHEBI:32889"
],
"inchi_key":[
"SRNWOUGRCWSEMX-TYASJMOZSA-L"
],
"kegg.compound":[
"C00301",
"C01882"
],
"metanetx.chemical":[
"MNXM48596"
],
"reactome.compound":[
"2393945",
"8870342",
"1131972"
],
"sabiork":[
"3120"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01296",
"cpd00251"
]
}
},
{
"id":"mql8_c",
"name":"Menaquinol 8",
"compartment":"c",
"charge":0,
"formula":"C51H74O2",
"notes":{
"original_bigg_ids":[
"mql8_c"
]
},
"annotation":{
"bigg.metabolite":[
"mql8"
],
"biocyc":[
"META:REDUCED-MENAQUINONE"
],
"chebi":[
"CHEBI:61684"
],
"inchi_key":[
"OIEZRVBFVPGODT-WQWYCSGDSA-N"
],
"metanetx.chemical":[
"MNXM223"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15499"
]
}
},
{
"id":"uacmamu_c",
"name":"UDP-N-acetyl-D-mannosaminouronate",
"compartment":"c",
"charge":-3,
"formula":"C17H22N3O18P2",
"notes":{
"original_bigg_ids":[
"uacmamu_c"
]
},
"annotation":{
"bigg.metabolite":[
"uacmamu"
],
"biocyc":[
"META:UDP-MANNACA"
],
"chebi":[
"CHEBI:70731",
"CHEBI:22117",
"CHEBI:58578",
"CHEBI:70738",
"CHEBI:28581",
"CHEBI:9825"
],
"inchi_key":[
"DZOGQXKQLXAPND-XHUKORKBSA-K"
],
"kegg.compound":[
"C06240"
],
"metanetx.chemical":[
"MNXM97052"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03732"
]
}
},
{
"id":"prpp_c",
"name":"5-Phospho-alpha-D-ribose 1-diphosphate",
"compartment":"c",
"charge":-5,
"formula":"C5H8O14P3",
"notes":{
"original_bigg_ids":[
"prpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prpp"
],
"biocyc":[
"META:PRPP"
],
"chebi":[
"CHEBI:2121",
"CHEBI:20625",
"CHEBI:12160",
"CHEBI:45139",
"CHEBI:12159",
"CHEBI:17111",
"CHEBI:58017"
],
"hmdb":[
"HMDB00280",
"HMDB62643"
],
"inchi_key":[
"PQGCEDQWHSBAJP-TXICZTDVSA-I"
],
"kegg.compound":[
"C00119"
],
"metanetx.chemical":[
"MNXM91"
],
"reactome.compound":[
"73566"
],
"sabiork":[
"1305"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00103"
]
}
},
{
"id":"acmana_p",
"name":"N-Acetyl-D-mannosamine",
"compartment":"p",
"charge":0,
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acmana_p"
]
},
"annotation":{
"bigg.metabolite":[
"acmana"
],
"biocyc":[
"META:N-acetyl-D-mannosamine"
],
"chebi":[
"CHEBI:7141",
"CHEBI:12459",
"CHEBI:12573",
"CHEBI:58019",
"CHEBI:17122",
"CHEBI:63153",
"CHEBI:21538"
],
"hmdb":[
"HMDB62724"
],
"inchi_key":[
"MBLBDJOUHNCFQT-XAMCCFCMSA-N"
],
"kegg.compound":[
"C00645"
],
"metanetx.chemical":[
"MNXM2403"
],
"reactome.compound":[
"4085214"
],
"sabiork":[
"25302",
"1583"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00492"
]
}
},
{
"id":"2dmmql8_c",
"name":"2-Demethylmenaquinol 8",
"compartment":"c",
"charge":0,
"formula":"C50H72O2",
"notes":{
"original_bigg_ids":[
"2dmmql8_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dmmql8"
],
"biocyc":[
"META:CPD-12115"
],
"chebi":[
"CHEBI:61873"
],
"inchi_key":[
"FGYPGICSXJEKCG-AENDIINCSA-N"
],
"metanetx.chemical":[
"MNXM558"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15353"
]
}
},
{
"id":"acmanap_c",
"name":"N-Acetyl-D-mannosamine 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acmanap_c"
]
},
"annotation":{
"bigg.metabolite":[
"acmanap"
],
"biocyc":[
"META:N-ACETYL-D-MANNOSAMINE-6P"
],
"chebi":[
"CHEBI:62165",
"CHEBI:62168",
"CHEBI:58557",
"CHEBI:7142",
"CHEBI:21539",
"CHEBI:28273"
],
"hmdb":[
"HMDB01121"
],
"inchi_key":[
"QDSLHWJDSQGPEE-WCTZXXKLSA-L"
],
"kegg.compound":[
"C04257"
],
"metanetx.chemical":[
"MNXM4708"
],
"reactome.compound":[
"4085225"
],
"sabiork":[
"1802"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02612"
]
}
},
{
"id":"paps_c",
"name":"3'-Phosphoadenylyl sulfate",
"compartment":"c",
"charge":-4,
"formula":"C10H11N5O13P2S",
"notes":{
"original_bigg_ids":[
"paps_c"
]
},
"annotation":{
"bigg.metabolite":[
"paps"
],
"biocyc":[
"META:PAPS"
],
"chebi":[
"CHEBI:17980",
"CHEBI:11680",
"CHEBI:19857",
"CHEBI:11679",
"CHEBI:58339",
"CHEBI:1353"
],
"hmdb":[
"HMDB01134",
"HMDB62646"
],
"inchi_key":[
"GACDQMDRPRGCTN-KQYNXXCUSA-J"
],
"kegg.compound":[
"C00053"
],
"metanetx.chemical":[
"MNXM49"
],
"reactome.compound":[
"741440",
"158471"
],
"sabiork":[
"1776"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00044"
]
}
},
{
"id":"acmana_e",
"name":"N-Acetyl-D-mannosamine",
"compartment":"e",
"charge":0,
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acmana_e"
]
},
"annotation":{
"bigg.metabolite":[
"acmana"
],
"biocyc":[
"META:N-acetyl-D-mannosamine"
],
"chebi":[
"CHEBI:7141",
"CHEBI:12459",
"CHEBI:12573",
"CHEBI:58019",
"CHEBI:17122",
"CHEBI:63153",
"CHEBI:21538"
],
"hmdb":[
"HMDB62724"
],
"inchi_key":[
"MBLBDJOUHNCFQT-XAMCCFCMSA-N"
],
"kegg.compound":[
"C00645"
],
"metanetx.chemical":[
"MNXM2403"
],
"reactome.compound":[
"4085214"
],
"sabiork":[
"25302",
"1583"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00492"
]
}
},
{
"id":"for_c",
"name":"Formate",
"compartment":"c",
"charge":-1,
"formula":"CH1O2",
"notes":{
"original_bigg_ids":[
"for_c"
]
},
"annotation":{
"bigg.metabolite":[
"for"
],
"biocyc":[
"META:CPD1G-1532",
"META:CPD1G-1535",
"META:FORMATE",
"META:CPD-9845",
"META:CPD1G-1534",
"META:CARBOXYL-GROUP",
"META:CPD1G-1533"
],
"chebi":[
"CHEBI:24081",
"CHEBI:30751",
"CHEBI:15740",
"CHEBI:5145",
"CHEBI:42460",
"CHEBI:14276",
"CHEBI:24082"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a9d20ae-b6ec-40a9-93ca-1de20597b1ed",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09c1ad08-016e-4477-8840-b97a031eae23",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/bf16ab32-cb3c-4427-a65a-089ab754823e",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/34fe3cd9-9b0b-46b0-a1c5-8a66509f1919",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1d077cf2-3f9f-4163-aa49-0fca1b2b3ab3"
],
"hmdb":[
"HMDB00142"
],
"inchi_key":[
"BDAGIHXWWSANSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00058"
],
"metanetx.chemical":[
"MNXM39"
],
"reactome.compound":[
"29460",
"194712",
"389585",
"6801451"
],
"sabiork":[
"1285"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00047",
"cpd22511"
]
}
},
{
"id":"aps_c",
"name":"Adenosine 5'-phosphosulfate",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O10PS",
"notes":{
"original_bigg_ids":[
"aps_c"
]
},
"annotation":{
"bigg.metabolite":[
"aps"
],
"biocyc":[
"META:APS"
],
"chebi":[
"CHEBI:22247",
"CHEBI:58243",
"CHEBI:13743",
"CHEBI:2486",
"CHEBI:13741",
"CHEBI:12059",
"CHEBI:17709",
"CHEBI:40562"
],
"hmdb":[
"HMDB01003"
],
"inchi_key":[
"IRLPACMLTUPBCL-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00224"
],
"metanetx.chemical":[
"MNXM287"
],
"reactome.compound":[
"174370"
],
"sabiork":[
"1803"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00193"
]
}
},
{
"id":"cgly_c",
"name":"Cys Gly C5H10N2O3S",
"compartment":"c",
"charge":0,
"formula":"C5H10N2O3S",
"notes":{
"original_bigg_ids":[
"cgly_c"
]
},
"annotation":{
"bigg.metabolite":[
"cgly"
],
"biocyc":[
"META:CYS-GLY"
],
"chebi":[
"CHEBI:61694",
"CHEBI:4047"
],
"hmdb":[
"HMDB28775",
"HMDB00078"
],
"inchi_key":[
"ZUKPVRWZDMRIEO-VKHMYHEASA-N"
],
"kegg.compound":[
"C01419"
],
"metanetx.chemical":[
"MNXM683"
],
"reactome.compound":[
"1247934",
"1247904"
],
"sabiork":[
"2282"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01017"
]
}
},
{
"id":"acmum_p",
"name":"N-Acetylmuramate",
"compartment":"p",
"charge":-1,
"formula":"C11H18NO8",
"notes":{
"original_bigg_ids":[
"acmum_p"
]
},
"annotation":{
"bigg.metabolite":[
"acmum"
],
"biocyc":[
"META:NACMUR"
],
"chebi":[
"CHEBI:47978",
"CHEBI:47965",
"CHEBI:21615",
"CHEBI:7212",
"CHEBI:28881"
],
"hmdb":[
"HMDB60493"
],
"inchi_key":[
"MNLRQHMNZILYPY-MKFCKLDKSA-M"
],
"kegg.compound":[
"C02713"
],
"metanetx.chemical":[
"MNXM2263"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01757"
]
}
},
{
"id":"dcamp_c",
"name":"N6-(1,2-Dicarboxyethyl)-AMP",
"compartment":"c",
"charge":-4,
"formula":"C14H14N5O11P",
"notes":{
"original_bigg_ids":[
"dcamp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcamp"
],
"biocyc":[
"META:ADENYLOSUCC"
],
"chebi":[
"CHEBI:12657",
"CHEBI:39869",
"CHEBI:57567",
"CHEBI:21857",
"CHEBI:7405",
"CHEBI:12656",
"CHEBI:22262",
"CHEBI:15919"
],
"hmdb":[
"HMDB01332",
"HMDB11633",
"HMDB59653",
"HMDB00536"
],
"inchi_key":[
"OFBHPPMPBOJXRT-DPXQIYNJSA-J"
],
"kegg.compound":[
"C03794"
],
"metanetx.chemical":[
"MNXM565"
],
"reactome.compound":[
"35141"
],
"sabiork":[
"1886"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02375"
]
}
},
{
"id":"acmum_e",
"name":"N-Acetylmuramate",
"compartment":"e",
"charge":-1,
"formula":"C11H18NO8",
"notes":{
"original_bigg_ids":[
"acmum_e"
]
},
"annotation":{
"bigg.metabolite":[
"acmum"
],
"biocyc":[
"META:NACMUR"
],
"chebi":[
"CHEBI:47978",
"CHEBI:47965",
"CHEBI:21615",
"CHEBI:7212",
"CHEBI:28881"
],
"hmdb":[
"HMDB60493"
],
"inchi_key":[
"MNLRQHMNZILYPY-MKFCKLDKSA-M"
],
"kegg.compound":[
"C02713"
],
"metanetx.chemical":[
"MNXM2263"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01757"
]
}
},
{
"id":"fum_c",
"name":"Fumarate",
"compartment":"c",
"charge":-2,
"formula":"C4H2O4",
"notes":{
"original_bigg_ids":[
"fum_c"
]
},
"annotation":{
"bigg.metabolite":[
"fum"
],
"biocyc":[
"META:FUM"
],
"chebi":[
"CHEBI:36180",
"CHEBI:37155",
"CHEBI:42511",
"CHEBI:5190",
"CHEBI:18012",
"CHEBI:42743",
"CHEBI:22956",
"CHEBI:22957",
"CHEBI:24124",
"CHEBI:14284",
"CHEBI:37154",
"CHEBI:29806",
"CHEBI:22958",
"CHEBI:24122"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/709035ec-4868-4de8-9095-06428f6be14b"
],
"hmdb":[
"HMDB00134"
],
"inchi_key":[
"VZCYOOQTPOCHFL-OWOJBTEDSA-L"
],
"kegg.compound":[
"C00122"
],
"kegg.drug":[
"D02308"
],
"metanetx.chemical":[
"MNXM93"
],
"reactome.compound":[
"113588",
"29586"
],
"sabiork":[
"1910"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00106"
]
}
},
{
"id":"acnam_p",
"name":"N-Acetylneuraminate",
"compartment":"p",
"charge":-1,
"formula":"C11H18NO9",
"notes":{
"original_bigg_ids":[
"acnam_p"
]
},
"annotation":{
"bigg.metabolite":[
"acnam"
],
"biocyc":[
"META:N-ACETYLNEURAMINATE",
"META:CPD0-1123"
],
"chebi":[
"CHEBI:12471",
"CHEBI:45744",
"CHEBI:58705",
"CHEBI:17012",
"CHEBI:29087",
"CHEBI:7214",
"CHEBI:12579",
"CHEBI:35418",
"CHEBI:21617",
"CHEBI:21620",
"CHEBI:33987"
],
"hmdb":[
"HMDB00800",
"HMDB00230"
],
"inchi_key":[
"SQVRNKJHWKZAKO-LUWBGTNYSA-M"
],
"kegg.compound":[
"C00270",
"C19910"
],
"metanetx.chemical":[
"MNXM227"
],
"sabiork":[
"22759",
"2006"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27569",
"cpd21149",
"cpd00232"
]
}
},
{
"id":"acnam_c",
"name":"N-Acetylneuraminate",
"compartment":"c",
"charge":-1,
"formula":"C11H18NO9",
"notes":{
"original_bigg_ids":[
"acnam_c"
]
},
"annotation":{
"bigg.metabolite":[
"acnam"
],
"biocyc":[
"META:N-ACETYLNEURAMINATE",
"META:CPD0-1123"
],
"chebi":[
"CHEBI:12471",
"CHEBI:45744",
"CHEBI:58705",
"CHEBI:17012",
"CHEBI:29087",
"CHEBI:7214",
"CHEBI:12579",
"CHEBI:35418",
"CHEBI:21617",
"CHEBI:21620",
"CHEBI:33987"
],
"hmdb":[
"HMDB00800",
"HMDB00230"
],
"inchi_key":[
"SQVRNKJHWKZAKO-LUWBGTNYSA-M"
],
"kegg.compound":[
"C00270",
"C19910"
],
"metanetx.chemical":[
"MNXM227"
],
"sabiork":[
"22759",
"2006"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27569",
"cpd21149",
"cpd00232"
]
}
},
{
"id":"25aics_c",
"name":"(S)-2-[5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido]succinate",
"compartment":"c",
"charge":-4,
"formula":"C13H15N4O12P",
"notes":{
"original_bigg_ids":[
"25aics_c"
]
},
"annotation":{
"bigg.metabolite":[
"25aics"
],
"biocyc":[
"META:P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE"
],
"chebi":[
"CHEBI:78110",
"CHEBI:18319",
"CHEBI:58443",
"CHEBI:11028",
"CHEBI:18965",
"CHEBI:572"
],
"hmdb":[
"HMDB00797",
"HMDB06274"
],
"inchi_key":[
"NAQGHJTUZRHGAC-ZZZDFHIKSA-J"
],
"kegg.compound":[
"C04823"
],
"metanetx.chemical":[
"MNXM607"
],
"reactome.compound":[
"111399"
],
"sabiork":[
"1893"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19032"
]
}
},
{
"id":"acnam_e",
"name":"N-Acetylneuraminate",
"compartment":"e",
"charge":-1,
"formula":"C11H18NO9",
"notes":{
"original_bigg_ids":[
"acnam_e"
]
},
"annotation":{
"bigg.metabolite":[
"acnam"
],
"biocyc":[
"META:N-ACETYLNEURAMINATE",
"META:CPD0-1123"
],
"chebi":[
"CHEBI:12471",
"CHEBI:45744",
"CHEBI:58705",
"CHEBI:17012",
"CHEBI:29087",
"CHEBI:7214",
"CHEBI:12579",
"CHEBI:35418",
"CHEBI:21617",
"CHEBI:21620",
"CHEBI:33987"
],
"hmdb":[
"HMDB00800",
"HMDB00230"
],
"inchi_key":[
"SQVRNKJHWKZAKO-LUWBGTNYSA-M"
],
"kegg.compound":[
"C00270",
"C19910"
],
"metanetx.chemical":[
"MNXM227"
],
"sabiork":[
"22759",
"2006"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27569",
"cpd21149",
"cpd00232"
]
}
},
{
"id":"aicar_c",
"name":"5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide",
"compartment":"c",
"charge":-2,
"formula":"C9H13N4O8P",
"notes":{
"original_bigg_ids":[
"aicar_c"
]
},
"annotation":{
"bigg.metabolite":[
"aicar"
],
"biocyc":[
"META:AICAR"
],
"chebi":[
"CHEBI:573",
"CHEBI:12102",
"CHEBI:40739",
"CHEBI:58475",
"CHEBI:18406",
"CHEBI:18966"
],
"hmdb":[
"HMDB01517"
],
"inchi_key":[
"NOTGFIUVDGNKRI-UUOKFMHZSA-L"
],
"kegg.compound":[
"C04677"
],
"metanetx.chemical":[
"MNXM365"
],
"reactome.compound":[
"111409"
],
"sabiork":[
"1891"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02851"
]
}
},
{
"id":"acmana_c",
"name":"N-Acetyl-D-mannosamine",
"compartment":"c",
"charge":0,
"formula":"C8H15NO6",
"notes":{
"original_bigg_ids":[
"acmana_c"
]
},
"annotation":{
"bigg.metabolite":[
"acmana"
],
"biocyc":[
"META:N-acetyl-D-mannosamine"
],
"chebi":[
"CHEBI:7141",
"CHEBI:12459",
"CHEBI:12573",
"CHEBI:58019",
"CHEBI:17122",
"CHEBI:63153",
"CHEBI:21538"
],
"hmdb":[
"HMDB62724"
],
"inchi_key":[
"MBLBDJOUHNCFQT-XAMCCFCMSA-N"
],
"kegg.compound":[
"C00645"
],
"metanetx.chemical":[
"MNXM2403"
],
"reactome.compound":[
"4085214"
],
"sabiork":[
"25302",
"1583"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00492"
]
}
},
{
"id":"asp__L_c",
"name":"L-Aspartate",
"compartment":"c",
"charge":-1,
"formula":"C4H6NO4",
"notes":{
"original_bigg_ids":[
"asp_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"asp__L"
],
"biocyc":[
"META:L-ASPARTATE"
],
"chebi":[
"CHEBI:17053",
"CHEBI:22659",
"CHEBI:6193",
"CHEBI:21247",
"CHEBI:29993",
"CHEBI:40942",
"CHEBI:29995",
"CHEBI:22660",
"CHEBI:29991",
"CHEBI:132943",
"CHEBI:35391",
"CHEBI:13085",
"CHEBI:40913",
"CHEBI:21244",
"CHEBI:40853",
"CHEBI:29992",
"CHEBI:40900"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4b0cdcb0-137a-4ddc-8e5c-2b55ea238c15"
],
"hmdb":[
"HMDB62186",
"HMDB62501",
"HMDB00191"
],
"inchi_key":[
"CKLJMWTZIZZHCS-REOHCLBHSA-M"
],
"kegg.compound":[
"C00049",
"C16433"
],
"kegg.drug":[
"D00013"
],
"metanetx.chemical":[
"MNXM42"
],
"reactome.compound":[
"113553",
"29448"
],
"sabiork":[
"71"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00041",
"cpd19181"
]
}
},
{
"id":"cys__L_c",
"name":"L-Cysteine",
"compartment":"c",
"charge":0,
"formula":"C3H7NO2S",
"notes":{
"original_bigg_ids":[
"cys_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"cys__L"
],
"biocyc":[
"META:CYS"
],
"chebi":[
"CHEBI:32457",
"CHEBI:15356",
"CHEBI:4050",
"CHEBI:32456",
"CHEBI:21261",
"CHEBI:41811",
"CHEBI:14061",
"CHEBI:32443",
"CHEBI:32458",
"CHEBI:32442",
"CHEBI:13095",
"CHEBI:41768",
"CHEBI:23508",
"CHEBI:32445",
"CHEBI:35235",
"CHEBI:17561",
"CHEBI:41700",
"CHEBI:6207",
"CHEBI:41781",
"CHEBI:35237",
"CHEBI:41227"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1271bedc-d0c8-4aa1-83dc-571304dd14a8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/02361658-c991-436f-ba62-fafbccfdae5e"
],
"hmdb":[
"HMDB00574"
],
"inchi_key":[
"XUJNEKJLAYXESH-REOHCLBHSA-N"
],
"kegg.compound":[
"C00736",
"C00097"
],
"kegg.drug":[
"D00026"
],
"metanetx.chemical":[
"MNXM55"
],
"reactome.compound":[
"352016",
"379721",
"111707",
"5668576"
],
"sabiork":[
"2142",
"78"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00084",
"cpd00547"
]
}
},
{
"id":"imp_c",
"name":"IMP C10H11N4O8P",
"compartment":"c",
"charge":-2,
"formula":"C10H11N4O8P",
"notes":{
"original_bigg_ids":[
"imp_c"
]
},
"annotation":{
"bigg.metabolite":[
"imp"
],
"biocyc":[
"META:IMP"
],
"chebi":[
"CHEBI:43524",
"CHEBI:13373",
"CHEBI:43528",
"CHEBI:19271",
"CHEBI:58053",
"CHEBI:12063",
"CHEBI:43611",
"CHEBI:5849",
"CHEBI:43563",
"CHEBI:12057",
"CHEBI:14457",
"CHEBI:43475",
"CHEBI:43418",
"CHEBI:17202",
"CHEBI:47501",
"CHEBI:13372"
],
"hmdb":[
"HMDB00175"
],
"inchi_key":[
"GRSZFWQUAKGDAV-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00130"
],
"metanetx.chemical":[
"MNXM125"
],
"reactome.compound":[
"2509792",
"29602"
],
"sabiork":[
"1306"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00114"
]
}
},
{
"id":"gly_c",
"name":"Glycine",
"compartment":"c",
"charge":0,
"formula":"C2H5NO2",
"notes":{
"original_bigg_ids":[
"gly_c"
]
},
"annotation":{
"bigg.metabolite":[
"gly"
],
"biocyc":[
"META:GLY"
],
"chebi":[
"CHEBI:32508",
"CHEBI:32507",
"CHEBI:15428",
"CHEBI:42964",
"CHEBI:14344",
"CHEBI:24368",
"CHEBI:10792",
"CHEBI:5460",
"CHEBI:57305"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/19441357-44af-48e1-b5ac-0e48c8dcbb87",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/870d7ca5-6659-40eb-8b5d-858bd29cddaa"
],
"hmdb":[
"HMDB00123"
],
"inchi_key":[
"DHMQDGOQFOQNFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00037"
],
"kegg.drug":[
"D00011"
],
"metanetx.chemical":[
"MNXM29"
],
"reactome.compound":[
"29424",
"193446",
"113545",
"159549",
"266029"
],
"sabiork":[
"66"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00033"
]
}
},
{
"id":"fadh2_c",
"name":"Flavin adenine dinucleotide reduced",
"compartment":"c",
"charge":-2,
"formula":"C27H33N9O15P2",
"notes":{
"original_bigg_ids":[
"fadh2_c"
]
},
"annotation":{
"bigg.metabolite":[
"fadh2"
],
"biocyc":[
"META:FADH2"
],
"chebi":[
"CHEBI:13316",
"CHEBI:42427",
"CHEBI:4957",
"CHEBI:17877",
"CHEBI:58307",
"CHEBI:21126"
],
"hmdb":[
"HMDB06358",
"HMDB06252",
"HMDB01197"
],
"inchi_key":[
"YPZRHBJKEMOYQH-UYBVJOGSSA-L"
],
"kegg.compound":[
"C01352"
],
"metanetx.chemical":[
"MNXM38"
],
"reactome.compound":[
"31649",
"164934"
],
"sabiork":[
"2274"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00982"
]
}
},
{
"id":"gam6p_c",
"name":"D-Glucosamine 6-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"gam6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gam6p"
],
"biocyc":[
"META:D-GLUCOSAMINE-6-P"
],
"chebi":[
"CHEBI:12962",
"CHEBI:47987",
"CHEBI:58725"
],
"inchi_key":[
"XHMJOUIAFHJHBW-IVMDWMLBSA-M"
],
"kegg.compound":[
"C00352"
],
"metanetx.chemical":[
"MNXM370"
],
"sabiork":[
"1372"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00288"
]
}
},
{
"id":"b2coa_c",
"name":"Crotonoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H36N7O17P3S",
"notes":{
"original_bigg_ids":[
"b2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"b2coa"
],
"biocyc":[
"META:CROTONYL-COA"
],
"chebi":[
"CHEBI:3928",
"CHEBI:11531",
"CHEBI:15473",
"CHEBI:36926",
"CHEBI:57332",
"CHEBI:23408",
"CHEBI:14031",
"CHEBI:14032",
"CHEBI:13921",
"CHEBI:41612",
"CHEBI:58669"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c0e5f008-6d8b-4b94-a265-03d19ff197f4"
],
"hmdb":[
"HMDB62466",
"HMDB02009",
"HMDB59627"
],
"inchi_key":[
"KFWWCMJSYSSPSK-PAXLJYGASA-J"
],
"kegg.compound":[
"C00877"
],
"lipidmaps":[
"LMFA07050307"
],
"metanetx.chemical":[
"MNXM214"
],
"reactome.compound":[
"71045",
"77313"
],
"sabiork":[
"2174"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00650"
]
}
},
{
"id":"anhgm_c",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid",
"compartment":"c",
"charge":-1,
"formula":"C19H29N2O12",
"notes":{
"original_bigg_ids":[
"anhgm_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm"
],
"metanetx.chemical":[
"MNXM3060"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15396"
]
}
},
{
"id":"btcoa_c",
"name":"Butanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H38N7O17P3S",
"notes":{
"original_bigg_ids":[
"btcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"btcoa"
],
"biocyc":[
"META:BUTYRYL-COA"
],
"chebi":[
"CHEBI:57371",
"CHEBI:22953",
"CHEBI:22973",
"CHEBI:3235",
"CHEBI:15517",
"CHEBI:13926"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dcfe6e71-5e24-4086-91a3-076df362da44"
],
"hmdb":[
"HMDB01088"
],
"inchi_key":[
"CRFNGMNYKDXRTN-CITAKDKDSA-J"
],
"kegg.compound":[
"C00136"
],
"lipidmaps":[
"LMFA07050292"
],
"metanetx.chemical":[
"MNXM233"
],
"reactome.compound":[
"77318"
],
"sabiork":[
"1942"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00120"
],
"slm":[
"000001035"
]
}
},
{
"id":"pro__L_c",
"name":"L-Proline",
"compartment":"c",
"charge":0,
"formula":"C5H9NO2",
"notes":{
"original_bigg_ids":[
"pro_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"pro__L"
],
"biocyc":[
"META:PRO"
],
"chebi":[
"CHEBI:26271",
"CHEBI:60039",
"CHEBI:45100",
"CHEBI:13154",
"CHEBI:184637",
"CHEBI:17203",
"CHEBI:21373",
"CHEBI:32862",
"CHEBI:32872",
"CHEBI:45040",
"CHEBI:32871",
"CHEBI:6286",
"CHEBI:32864",
"CHEBI:42067",
"CHEBI:45159",
"CHEBI:58054"
],
"hmdb":[
"HMDB00162"
],
"inchi_key":[
"ONIBWKKTOPOVIA-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00148",
"C16435"
],
"kegg.drug":[
"D00035"
],
"metanetx.chemical":[
"MNXM114"
],
"reactome.compound":[
"352033",
"379717",
"113538"
],
"sabiork":[
"25536",
"82"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00129",
"cpd15140"
]
}
},
{
"id":"anhgm3p_c",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide",
"compartment":"c",
"charge":-2,
"formula":"C34H52N6O19",
"notes":{
"original_bigg_ids":[
"anhgm3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm3p"
],
"biocyc":[
"META:CPD0-2155"
],
"inchi_key":[
"ZWZMFRJKRXDGBE-UHFFFAOYSA-L"
],
"metanetx.chemical":[
"MNXM63489"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15397"
]
}
},
{
"id":"progly_c",
"name":"L-Prolinylglycine",
"compartment":"c",
"charge":0,
"formula":"C7H12N2O3",
"notes":{
"original_bigg_ids":[
"progly_c"
]
},
"annotation":{
"bigg.metabolite":[
"progly"
],
"biocyc":[
"META:CPD0-2182"
],
"chebi":[
"CHEBI:61696",
"CHEBI:61695",
"CHEBI:73594"
],
"inchi_key":[
"RNKSNIBMTUYWSH-YFKPBYRVSA-N"
],
"metanetx.chemical":[
"MNXM7481"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15551"
]
}
},
{
"id":"fad_c",
"name":"Flavin adenine dinucleotide oxidized",
"compartment":"c",
"charge":-2,
"formula":"C27H31N9O15P2",
"notes":{
"original_bigg_ids":[
"fad_c"
]
},
"annotation":{
"bigg.metabolite":[
"fad"
],
"biocyc":[
"META:FAD"
],
"chebi":[
"CHEBI:16238",
"CHEBI:42388",
"CHEBI:21125",
"CHEBI:57692",
"CHEBI:13315",
"CHEBI:4956"
],
"hmdb":[
"HMDB01248"
],
"inchi_key":[
"IMGVNJNCCGXBHD-UYBVJOGSSA-K"
],
"kegg.compound":[
"C00016"
],
"kegg.drug":[
"D00005"
],
"metanetx.chemical":[
"MNXM33"
],
"reactome.compound":[
"113596",
"29386",
"113597"
],
"sabiork":[
"1270"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00015"
]
}
},
{
"id":"hxcoa_c",
"name":"Hexanoyl-CoA (n-C6:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C27H42N7O17P3S",
"notes":{
"original_bigg_ids":[
"hxcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hxcoa"
],
"metanetx.chemical":[
"MNXM162502"
],
"sbo":"SBO:0000247"
}
},
{
"id":"anhgm_p",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid",
"compartment":"p",
"charge":-1,
"formula":"C19H29N2O12",
"notes":{
"original_bigg_ids":[
"anhgm_p"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm"
],
"metanetx.chemical":[
"MNXM3060"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15396"
]
}
},
{
"id":"hx2coa_c",
"name":"Trans-Hex-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C27H40N7O17P3S",
"notes":{
"original_bigg_ids":[
"hx2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hx2coa"
],
"biocyc":[
"META:CPD0-2121"
],
"chebi":[
"CHEBI:27076",
"CHEBI:28706",
"CHEBI:62077",
"CHEBI:10726"
],
"inchi_key":[
"OINXHIBNZUUIMR-IXUYQXAASA-J"
],
"kegg.compound":[
"C05271"
],
"lipidmaps":[
"LMFA07050393",
"LMFA07050019"
],
"metanetx.chemical":[
"MNXM753"
],
"reactome.compound":[
"77324"
],
"sabiork":[
"2748"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03125"
],
"slm":[
"000001034"
]
}
},
{
"id":"amp_e",
"name":"AMP C10H12N5O7P",
"compartment":"e",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"amp_e"
]
},
"annotation":{
"bigg.metabolite":[
"amp"
],
"biocyc":[
"META:AMP-GROUP",
"META:AMP"
],
"chebi":[
"CHEBI:13736",
"CHEBI:2356",
"CHEBI:13234",
"CHEBI:22242",
"CHEBI:40786",
"CHEBI:16027",
"CHEBI:40721",
"CHEBI:40510",
"CHEBI:456215",
"CHEBI:13235",
"CHEBI:22245",
"CHEBI:40726",
"CHEBI:47222",
"CHEBI:13740",
"CHEBI:40826",
"CHEBI:12056"
],
"hmdb":[
"HMDB00045"
],
"inchi_key":[
"UDMBCSSLTHHNCD-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00020"
],
"kegg.drug":[
"D02769"
],
"metanetx.chemical":[
"MNXM14"
],
"reactome.compound":[
"389620",
"159448",
"76577",
"109275",
"164121"
],
"sabiork":[
"1273"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22272",
"cpd00018"
]
}
},
{
"id":"amp_p",
"name":"AMP C10H12N5O7P",
"compartment":"p",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"amp_p"
]
},
"annotation":{
"bigg.metabolite":[
"amp"
],
"biocyc":[
"META:AMP-GROUP",
"META:AMP"
],
"chebi":[
"CHEBI:13736",
"CHEBI:2356",
"CHEBI:13234",
"CHEBI:22242",
"CHEBI:40786",
"CHEBI:16027",
"CHEBI:40721",
"CHEBI:40510",
"CHEBI:456215",
"CHEBI:13235",
"CHEBI:22245",
"CHEBI:40726",
"CHEBI:47222",
"CHEBI:13740",
"CHEBI:40826",
"CHEBI:12056"
],
"hmdb":[
"HMDB00045"
],
"inchi_key":[
"UDMBCSSLTHHNCD-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00020"
],
"kegg.drug":[
"D02769"
],
"metanetx.chemical":[
"MNXM14"
],
"reactome.compound":[
"389620",
"159448",
"76577",
"109275",
"164121"
],
"sabiork":[
"1273"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22272",
"cpd00018"
]
}
},
{
"id":"anhgm3p_p",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide",
"compartment":"p",
"charge":-2,
"formula":"C34H52N6O19",
"notes":{
"original_bigg_ids":[
"anhgm3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm3p"
],
"biocyc":[
"META:CPD0-2155"
],
"inchi_key":[
"ZWZMFRJKRXDGBE-UHFFFAOYSA-L"
],
"metanetx.chemical":[
"MNXM63489"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15397"
]
}
},
{
"id":"anhgm_e",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid",
"compartment":"e",
"charge":-1,
"formula":"C19H29N2O12",
"notes":{
"original_bigg_ids":[
"anhgm_e"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm"
],
"metanetx.chemical":[
"MNXM3060"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15396"
]
}
},
{
"id":"occoa_c",
"name":"Octanoyl-CoA (n-C8:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C29H46N7O17P3S",
"notes":{
"original_bigg_ids":[
"occoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"occoa"
],
"biocyc":[
"META:CPD-196"
],
"chebi":[
"CHEBI:41542",
"CHEBI:25651",
"CHEBI:7724",
"CHEBI:14681",
"CHEBI:15533",
"CHEBI:57386"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/803b8f43-e64d-427d-a22e-a38aca2708eb"
],
"hmdb":[
"HMDB06257",
"HMDB01070"
],
"inchi_key":[
"KQMZYOXOBSXMII-CECATXLMSA-J"
],
"kegg.compound":[
"C01944"
],
"lipidmaps":[
"LMFA07050355"
],
"metanetx.chemical":[
"MNXM342"
],
"reactome.compound":[
"390303",
"77337"
],
"sabiork":[
"2341"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01335"
],
"slm":[
"000000707"
]
}
},
{
"id":"anhm3p_c",
"name":"1,6-anhydrous-N-Acetylmuramyl-tripeptide",
"compartment":"c",
"charge":-2,
"formula":"C26H39N5O14",
"notes":{
"original_bigg_ids":[
"anhm3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhm3p"
],
"biocyc":[
"META:CPD0-2284"
],
"inchi_key":[
"KGVLFEPQSVUIRC-FYQNUYSYSA-L"
],
"metanetx.chemical":[
"MNXM32389"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15400"
]
}
},
{
"id":"oc2coa_c",
"name":"Trans-Oct-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C29H44N7O17P3S",
"notes":{
"original_bigg_ids":[
"oc2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"oc2coa"
],
"biocyc":[
"META:CPD0-2108"
],
"chebi":[
"CHEBI:62242",
"CHEBI:27537",
"CHEBI:27078",
"CHEBI:10732"
],
"hmdb":[
"HMDB03949"
],
"inchi_key":[
"CPSDNAXXKWVYIY-NTLMCJQISA-J"
],
"kegg.compound":[
"C05276"
],
"lipidmaps":[
"LMFA07050024",
"LMFA07050394"
],
"metanetx.chemical":[
"MNXM784"
],
"reactome.compound":[
"6809800",
"77332"
],
"sabiork":[
"2753"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03130"
],
"slm":[
"000001033"
]
}
},
{
"id":"anhgm4p_c",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide",
"compartment":"c",
"charge":-2,
"formula":"C37H57N7O20",
"notes":{
"original_bigg_ids":[
"anhgm4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm4p"
],
"biocyc":[
"META:CPD0-2292"
],
"inchi_key":[
"ZTOWCORYLXDAAW-JOUWMGDHSA-L"
],
"metanetx.chemical":[
"MNXM63488"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15398"
]
}
},
{
"id":"dc2coa_c",
"name":"Trans-Dec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C31H48N7O17P3S",
"notes":{
"original_bigg_ids":[
"dc2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"dc2coa"
],
"biocyc":[
"META:T2-DECENOYL-COA"
],
"chebi":[
"CHEBI:10723",
"CHEBI:61406"
],
"hmdb":[
"HMDB03948"
],
"inchi_key":[
"MGNBGCRQQFMNBM-YJHHLLFWSA-J"
],
"kegg.compound":[
"C05275"
],
"lipidmaps":[
"LMFA07050023",
"LMFA07050391",
"LMFA07050175"
],
"metanetx.chemical":[
"MNXM580"
],
"reactome.compound":[
"77343"
],
"sabiork":[
"2752"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03129"
],
"slm":[
"000000907"
]
}
},
{
"id":"pran_c",
"name":"N-(5-Phospho-D-ribosyl)anthranilate",
"compartment":"c",
"charge":-3,
"formula":"C12H13NO9P",
"notes":{
"original_bigg_ids":[
"pran_c"
]
},
"annotation":{
"bigg.metabolite":[
"pran"
],
"biocyc":[
"META:N-5-PHOSPHORIBOSYL-ANTHRANILATE"
],
"chebi":[
"CHEBI:12431",
"CHEBI:21472",
"CHEBI:12432",
"CHEBI:21488",
"CHEBI:7091",
"CHEBI:18277"
],
"inchi_key":[
"PMFMJXPRNJUYMB-GWOFURMSSA-K"
],
"kegg.compound":[
"C04302"
],
"metanetx.chemical":[
"MNXM1489"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02642"
]
}
},
{
"id":"anth_c",
"name":"Anthranilate",
"compartment":"c",
"charge":-1,
"formula":"C7H6NO2",
"notes":{
"original_bigg_ids":[
"anth_c"
]
},
"annotation":{
"bigg.metabolite":[
"anth"
],
"biocyc":[
"META:ANTHRANILATE"
],
"chebi":[
"CHEBI:30754",
"CHEBI:22575",
"CHEBI:16567",
"CHEBI:40980",
"CHEBI:22578",
"CHEBI:13841",
"CHEBI:22577",
"CHEBI:2757"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/ec511e59-d2cf-482d-ae9f-7f4dd74818c2"
],
"hmdb":[
"HMDB01123"
],
"inchi_key":[
"RWZYAGGXGHYGMB-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00108"
],
"metanetx.chemical":[
"MNXM188"
],
"sabiork":[
"5005"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00093"
]
}
},
{
"id":"anhgm4p_p",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide",
"compartment":"p",
"charge":-2,
"formula":"C37H57N7O20",
"notes":{
"original_bigg_ids":[
"anhgm4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"anhgm4p"
],
"biocyc":[
"META:CPD0-2292"
],
"inchi_key":[
"ZTOWCORYLXDAAW-JOUWMGDHSA-L"
],
"metanetx.chemical":[
"MNXM63488"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15398"
]
}
},
{
"id":"2aobut_c",
"name":"L-2-Amino-3-oxobutanoate",
"compartment":"c",
"charge":0,
"formula":"C4H7NO3",
"notes":{
"original_bigg_ids":[
"2aobut_c"
]
},
"annotation":{
"bigg.metabolite":[
"2aobut"
],
"biocyc":[
"META:AMINO-OXOBUT"
],
"chebi":[
"CHEBI:6156",
"CHEBI:78948",
"CHEBI:35229",
"CHEBI:40668",
"CHEBI:21195",
"CHEBI:13048",
"CHEBI:40673",
"CHEBI:16944"
],
"hmdb":[
"HMDB06454"
],
"inchi_key":[
"SAUCHDKDCUROAO-VKHMYHEASA-N"
],
"kegg.compound":[
"C03508"
],
"lipidmaps":[
"LMFA01060172"
],
"metanetx.chemical":[
"MNXM114087"
],
"reactome.compound":[
"6798652"
],
"sabiork":[
"6672"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02211"
]
}
},
{
"id":"dcacoa_c",
"name":"Decanoyl-CoA (n-C10:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C31H50N7O17P3S",
"notes":{
"original_bigg_ids":[
"dcacoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcacoa"
],
"hmdb":[
"HMDB06404"
],
"metanetx.chemical":[
"MNXM162283"
],
"sbo":"SBO:0000247"
}
},
{
"id":"anhm4p_c",
"name":"1,6-anhydrous-N-Acetylmuramyl-tetrapeptide",
"compartment":"c",
"charge":-2,
"formula":"C29H44N6O15",
"notes":{
"original_bigg_ids":[
"anhm4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhm4p"
],
"inchi_key":[
"OUWAMZWZTFUVMV-NPLPHQDTSA-L"
],
"metanetx.chemical":[
"MNXM5405"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15401"
]
}
},
{
"id":"ddcacoa_c",
"name":"Dodecanoyl-CoA (n-C12:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C33H54N7O17P3S",
"notes":{
"original_bigg_ids":[
"ddcacoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ddcacoa"
],
"biocyc":[
"META:LAUROYLCOA-CPD"
],
"chebi":[
"CHEBI:15521",
"CHEBI:57375",
"CHEBI:25014",
"CHEBI:6392",
"CHEBI:41874",
"CHEBI:14188",
"CHEBI:14501"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/74d61ac3-3daa-4b6c-b746-ada3812ec3c7"
],
"hmdb":[
"HMDB03571"
],
"inchi_key":[
"YMCXGHLSVALICC-GMHMEAMDSA-J"
],
"kegg.compound":[
"C01832"
],
"lipidmaps":[
"LMFA07050340",
"LMFA07050005"
],
"metanetx.chemical":[
"MNXM363"
],
"reactome.compound":[
"77261"
],
"sabiork":[
"2322"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01260"
],
"slm":[
"000000649"
]
}
},
{
"id":"anhm_c",
"name":"1,6-anhydrous-N-Acetylmuramate",
"compartment":"c",
"charge":-1,
"formula":"C11H16NO7",
"notes":{
"original_bigg_ids":[
"anhm_c"
]
},
"annotation":{
"bigg.metabolite":[
"anhm"
],
"metanetx.chemical":[
"MNXM90585"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15399"
]
}
},
{
"id":"dd2coa_c",
"name":"Trans-Dodec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C33H52N7O17P3S",
"notes":{
"original_bigg_ids":[
"dd2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"dd2coa"
],
"biocyc":[
"META:CPD-7222"
],
"chebi":[
"CHEBI:1287",
"CHEBI:57330",
"CHEBI:19790",
"CHEBI:15471",
"CHEBI:11489"
],
"hmdb":[
"HMDB11689",
"HMDB03712"
],
"inchi_key":[
"IRFYVBULXZMEDE-DEEZISNZSA-J"
],
"kegg.compound":[
"C03221"
],
"lipidmaps":[
"LMFA07050378",
"LMFA07050010",
"LMFA07050176"
],
"metanetx.chemical":[
"MNXM642"
],
"reactome.compound":[
"77255"
],
"sabiork":[
"2706"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02060"
],
"slm":[
"000000909"
]
}
},
{
"id":"pmcoa_c",
"name":"Pimeloyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C28H41N7O19P3S",
"notes":{
"original_bigg_ids":[
"pmcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"pmcoa"
],
"biocyc":[
"META:CPD-558"
],
"chebi":[
"CHEBI:12210",
"CHEBI:57360",
"CHEBI:26131",
"CHEBI:15504",
"CHEBI:2176",
"CHEBI:14838"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/46ebba99-d2f1-41ec-8e19-08b6b7e591b5"
],
"inchi_key":[
"LYCRXMTYUZDUGA-UYRKPTJQSA-I"
],
"kegg.compound":[
"C01063"
],
"lipidmaps":[
"LMFA07050363"
],
"metanetx.chemical":[
"MNXM951"
],
"sabiork":[
"2234"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00782"
]
}
},
{
"id":"ap4a_c",
"name":"P1,P4-Bis(5'-adenosyl) tetraphosphate",
"compartment":"c",
"charge":-4,
"formula":"C20H24N10O19P4",
"notes":{
"original_bigg_ids":[
"ap4a_c"
]
},
"annotation":{
"bigg.metabolite":[
"ap4a"
],
"biocyc":[
"META:ADENOSYL-P4"
],
"chebi":[
"CHEBI:58141",
"CHEBI:7875",
"CHEBI:12729",
"CHEBI:21998",
"CHEBI:17422",
"CHEBI:12726"
],
"hmdb":[
"HMDB01211",
"HMDB06502"
],
"inchi_key":[
"YOAHKNVSNCMZGQ-XPWFQUROSA-J"
],
"kegg.compound":[
"C01260"
],
"metanetx.chemical":[
"MNXM1089"
],
"sabiork":[
"1707"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00924"
]
}
},
{
"id":"adphep_DD_c",
"name":"ADP-D-glycero-D-manno-heptose",
"compartment":"c",
"charge":-2,
"formula":"C17H25N5O16P2",
"notes":{
"original_bigg_ids":[
"adphep_DD_c"
]
},
"annotation":{
"bigg.metabolite":[
"adphep_DD"
],
"biocyc":[
"META:ADP-D-GLYCERO-D-MANNO-HEPTOSE"
],
"chebi":[
"CHEBI:57863",
"CHEBI:59966",
"CHEBI:13223",
"CHEBI:59967",
"CHEBI:16693",
"CHEBI:2343",
"CHEBI:20842"
],
"inchi_key":[
"KMSFWBYFWSKGGR-FQBROAFUSA-L"
],
"kegg.compound":[
"C06397"
],
"metanetx.chemical":[
"MNXM1648"
],
"sabiork":[
"1588"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03830",
"cpd29671"
]
}
},
{
"id":"ap5a_c",
"name":"P1,P5-Bis(5'-adenosyl) pentaphosphate",
"compartment":"c",
"charge":-5,
"formula":"C20H24N10O22P5",
"notes":{
"original_bigg_ids":[
"ap5a_c"
]
},
"annotation":{
"bigg.metabolite":[
"ap5a"
],
"biocyc":[
"META:CPD0-1137"
],
"chebi":[
"CHEBI:22002",
"CHEBI:62041",
"CHEBI:28898",
"CHEBI:3120"
],
"inchi_key":[
"OIMACDRJUANHTJ-XPWFQUROSA-I"
],
"kegg.compound":[
"C04058"
],
"metanetx.chemical":[
"MNXM2412"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02511"
]
}
},
{
"id":"tdcoa_c",
"name":"Tetradecanoyl-CoA (n-C14:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C35H58N7O17P3S",
"notes":{
"original_bigg_ids":[
"tdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"tdcoa"
],
"biocyc":[
"META:TETRADECANOYL-COA"
],
"chebi":[
"CHEBI:15532",
"CHEBI:57385",
"CHEBI:9475",
"CHEBI:14637",
"CHEBI:26898",
"CHEBI:52969",
"CHEBI:15218"
],
"hmdb":[
"HMDB01521",
"HMDB06517"
],
"inchi_key":[
"DUAFKXOFBZQTQE-QSGBVPJFSA-J"
],
"kegg.compound":[
"C02593"
],
"lipidmaps":[
"LMFA07050352",
"LMFA07050373",
"LMFA07050008"
],
"metanetx.chemical":[
"MNXM224"
],
"reactome.compound":[
"77272"
],
"sabiork":[
"2457"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01695"
],
"slm":[
"000000439"
]
}
},
{
"id":"adphep_LD_c",
"name":"ADP-L-glycero-D-manno-heptose",
"compartment":"c",
"charge":-2,
"formula":"C17H25N5O16P2",
"notes":{
"original_bigg_ids":[
"adphep_LD_c"
]
},
"annotation":{
"bigg.metabolite":[
"adphep_LD"
],
"biocyc":[
"META:ADP-L-GLYCERO-D-MANNO-HEPTOSE"
],
"chebi":[
"CHEBI:57564",
"CHEBI:15915",
"CHEBI:61506",
"CHEBI:20844",
"CHEBI:2347",
"CHEBI:61530",
"CHEBI:13226"
],
"inchi_key":[
"KMSFWBYFWSKGGR-DTBZDYEHSA-L"
],
"kegg.compound":[
"C06398"
],
"metanetx.chemical":[
"MNXM857"
],
"sabiork":[
"1589"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03831"
]
}
},
{
"id":"td2coa_c",
"name":"Trans-Tetradec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C35H56N7O17P3S",
"notes":{
"original_bigg_ids":[
"td2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"td2coa"
],
"biocyc":[
"META:CPD-15568"
],
"chebi":[
"CHEBI:10734",
"CHEBI:61405",
"CHEBI:27721",
"CHEBI:27079"
],
"hmdb":[
"HMDB03946",
"HMDB13082"
],
"inchi_key":[
"MBCVYCOKMMMWLX-YYMFEJJQSA-J"
],
"kegg.compound":[
"C05273"
],
"lipidmaps":[
"LMFA07050021",
"LMFA07050396"
],
"metanetx.chemical":[
"MNXM654"
],
"reactome.compound":[
"77273"
],
"sabiork":[
"2750"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03127"
],
"slm":[
"000001021"
]
}
},
{
"id":"5apru_c",
"name":"5-Amino-6-(5'-phosphoribosylamino)uracil",
"compartment":"c",
"charge":-2,
"formula":"C9H13N4O9P",
"notes":{
"original_bigg_ids":[
"5apru_c"
]
},
"annotation":{
"bigg.metabolite":[
"5apru"
],
"biocyc":[
"META:CPD-602"
],
"chebi":[
"CHEBI:12108",
"CHEBI:58453",
"CHEBI:18337",
"CHEBI:2032",
"CHEBI:20546",
"CHEBI:59550",
"CHEBI:59551"
],
"inchi_key":[
"LZEXYCAGPMYXLX-UMMCILCDSA-L"
],
"kegg.compound":[
"C01268"
],
"metanetx.chemical":[
"MNXM1532"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00931"
]
}
},
{
"id":"agm_c",
"name":"Agmatine",
"compartment":"c",
"charge":2,
"formula":"C5H16N4",
"notes":{
"original_bigg_ids":[
"agm_c"
]
},
"annotation":{
"bigg.metabolite":[
"agm"
],
"biocyc":[
"META:AGMATHINE"
],
"chebi":[
"CHEBI:17431",
"CHEBI:2514",
"CHEBI:18576",
"CHEBI:13747",
"CHEBI:58145",
"CHEBI:40556"
],
"hmdb":[
"HMDB60259",
"HMDB01432"
],
"inchi_key":[
"QYPPJABKJHAVHS-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00179"
],
"metanetx.chemical":[
"MNXM328"
],
"reactome.compound":[
"351164"
],
"sabiork":[
"4059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00152"
]
}
},
{
"id":"5aprbu_c",
"name":"5-Amino-6-(5'-phosphoribitylamino)uracil",
"compartment":"c",
"charge":-2,
"formula":"C9H15N4O9P",
"notes":{
"original_bigg_ids":[
"5aprbu_c"
]
},
"annotation":{
"bigg.metabolite":[
"5aprbu"
],
"biocyc":[
"META:CPD-1086"
],
"chebi":[
"CHEBI:2031",
"CHEBI:58421",
"CHEBI:12107",
"CHEBI:18247"
],
"hmdb":[
"HMDB03841"
],
"inchi_key":[
"RQRINYISXYAZKL-RPDRRWSUSA-L"
],
"kegg.compound":[
"C04454"
],
"metanetx.chemical":[
"MNXM1178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02720"
]
}
},
{
"id":"pmtcoa_c",
"name":"Palmitoyl-CoA (n-C16:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C37H62N7O17P3S",
"notes":{
"original_bigg_ids":[
"pmtcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"pmtcoa"
],
"biocyc":[
"META:PALMITYL-COA"
],
"chebi":[
"CHEBI:14397",
"CHEBI:57379",
"CHEBI:24543",
"CHEBI:7898",
"CHEBI:15525",
"CHEBI:14732"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/683c12f9-18f4-4439-a718-0877aa11b9ae"
],
"hmdb":[
"HMDB01338",
"HMDB59623"
],
"inchi_key":[
"MNBKLUUYKPBKDU-BBECNAHFSA-J"
],
"kegg.compound":[
"C00154"
],
"lipidmaps":[
"LMFA07050360"
],
"metanetx.chemical":[
"MNXM88"
],
"reactome.compound":[
"5358339"
],
"sabiork":[
"1310"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00134"
],
"slm":[
"000000383"
]
}
},
{
"id":"urea_c",
"name":"Urea CH4N2O",
"compartment":"c",
"charge":0,
"formula":"CH4N2O",
"notes":{
"original_bigg_ids":[
"urea_c"
]
},
"annotation":{
"bigg.metabolite":[
"urea"
],
"biocyc":[
"META:UREA"
],
"chebi":[
"CHEBI:134711",
"CHEBI:15292",
"CHEBI:16199",
"CHEBI:32285",
"CHEBI:48376",
"CHEBI:9888",
"CHEBI:27218",
"CHEBI:46379"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a8116a-0fc4-4ad8-b192-1387a253bac6",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e1054e0b-a299-4b89-b470-455c007d2bc6",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/f410026a-1678-4d69-b6ac-505c7b9fe316"
],
"hmdb":[
"HMDB00294"
],
"inchi_key":[
"XSQUKJJJFZCRTK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00086"
],
"kegg.drug":[
"D01749",
"D10496",
"D00023"
],
"metanetx.chemical":[
"MNXM117"
],
"reactome.compound":[
"374061",
"29514",
"432019"
],
"sabiork":[
"1798"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00073"
]
}
},
{
"id":"hdd2coa_c",
"name":"Trans-Hexadec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C37H60N7O17P3S",
"notes":{
"original_bigg_ids":[
"hdd2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdd2coa"
],
"biocyc":[
"META:CPD0-2117"
],
"chebi":[
"CHEBI:27047",
"CHEBI:10728",
"CHEBI:61526",
"CHEBI:28935",
"CHEBI:52381"
],
"hmdb":[
"HMDB06533",
"HMDB03945"
],
"inchi_key":[
"JUPAQFRKPHPXLD-MSHHSVQMSA-J"
],
"kegg.compound":[
"C05272"
],
"lipidmaps":[
"LMFA07050020",
"LMFA07050144"
],
"metanetx.chemical":[
"MNXM581"
],
"reactome.compound":[
"77284"
],
"sabiork":[
"2749"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03126"
],
"slm":[
"000000444"
]
}
},
{
"id":"od2coa_c",
"name":"Trans-Octadec-2-enoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C39H64N7O17P3S",
"notes":{
"original_bigg_ids":[
"od2coa_c"
]
},
"annotation":{
"bigg.metabolite":[
"od2coa"
],
"biocyc":[
"META:CPD-10262"
],
"chebi":[
"CHEBI:50570",
"CHEBI:71412"
],
"hmdb":[
"HMDB62633",
"HMDB06529"
],
"inchi_key":[
"NBCCUIHOHUKBMK-ZDDAFBBHSA-J"
],
"kegg.compound":[
"C16218"
],
"lipidmaps":[
"LMFA07050385"
],
"metanetx.chemical":[
"MNXM954"
],
"reactome.compound":[
"548809"
],
"sabiork":[
"18861"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14937"
],
"slm":[
"000000817"
]
}
},
{
"id":"rbl__L_c",
"name":"L-Ribulose",
"compartment":"c",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"rbl_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"rbl__L"
],
"biocyc":[
"META:L-RIBULOSE"
],
"chebi":[
"CHEBI:16880",
"CHEBI:6295",
"CHEBI:21382",
"CHEBI:13163"
],
"inchi_key":[
"ZAQJHHRNXZUBTE-UCORVYFPSA-N"
],
"kegg.compound":[
"C00508"
],
"metanetx.chemical":[
"MNXM685"
],
"sabiork":[
"1501"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00397"
]
}
},
{
"id":"ptrc_c",
"name":"Putrescine",
"compartment":"c",
"charge":2,
"formula":"C4H14N2",
"notes":{
"original_bigg_ids":[
"ptrc_c"
]
},
"annotation":{
"bigg.metabolite":[
"ptrc"
],
"biocyc":[
"META:PUTRESCINE"
],
"chebi":[
"CHEBI:8650",
"CHEBI:17148",
"CHEBI:45092",
"CHEBI:26405",
"CHEBI:14972",
"CHEBI:326268"
],
"hmdb":[
"HMDB01414",
"HMDB60243"
],
"inchi_key":[
"KIDHWZJUCRJVML-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00134"
],
"metanetx.chemical":[
"MNXM118"
],
"reactome.compound":[
"29610",
"141350"
],
"sabiork":[
"1941"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00118",
"cpd12215"
]
}
},
{
"id":"agm_p",
"name":"Agmatine",
"compartment":"p",
"charge":2,
"formula":"C5H16N4",
"notes":{
"original_bigg_ids":[
"agm_p"
]
},
"annotation":{
"bigg.metabolite":[
"agm"
],
"biocyc":[
"META:AGMATHINE"
],
"chebi":[
"CHEBI:17431",
"CHEBI:2514",
"CHEBI:18576",
"CHEBI:13747",
"CHEBI:58145",
"CHEBI:40556"
],
"hmdb":[
"HMDB60259",
"HMDB01432"
],
"inchi_key":[
"QYPPJABKJHAVHS-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00179"
],
"metanetx.chemical":[
"MNXM328"
],
"reactome.compound":[
"351164"
],
"sabiork":[
"4059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00152"
]
}
},
{
"id":"arab__L_c",
"name":"L-Arabinose",
"compartment":"c",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"arab_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"arab__L"
],
"biocyc":[
"META:CPD-15699",
"META:L-ARABINOSE"
],
"chebi":[
"CHEBI:6182"
],
"inchi_key":[
"PYMYPHUHKUWMLA-VAYJURFESA-N"
],
"kegg.compound":[
"C11476"
],
"metanetx.chemical":[
"MNXM91126"
],
"sabiork":[
"1477"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27351",
"cpd19109"
]
}
},
{
"id":"stcoa_c",
"name":"Stearoyl-CoA (n-C18:0CoA)",
"compartment":"c",
"charge":-4,
"formula":"C39H66N7O17P3S",
"notes":{
"original_bigg_ids":[
"stcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"stcoa"
],
"biocyc":[
"META:STEAROYL-COA"
],
"chebi":[
"CHEBI:15107",
"CHEBI:26754",
"CHEBI:57394",
"CHEBI:9256",
"CHEBI:15541"
],
"hmdb":[
"HMDB01114"
],
"inchi_key":[
"SIARJEKBADXQJG-LFZQUHGESA-J"
],
"kegg.compound":[
"C00412"
],
"lipidmaps":[
"LMFA07050369"
],
"metanetx.chemical":[
"MNXM272"
],
"reactome.compound":[
"428139"
],
"sabiork":[
"5079"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00327"
],
"slm":[
"000000441"
]
}
},
{
"id":"acACP_c",
"name":"Acetyl-ACP",
"compartment":"c",
"charge":-1,
"formula":"C386H605O143N96P1S3",
"notes":{
"original_bigg_ids":[
"acACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"acACP"
],
"biocyc":[
"META:ACETYL-ACP"
],
"chebi":[
"CHEBI:13713",
"CHEBI:2409",
"CHEBI:17093"
],
"kegg.compound":[
"C03939"
],
"metanetx.chemical":[
"MNXM1269"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11494"
]
}
},
{
"id":"agm_e",
"name":"Agmatine",
"compartment":"e",
"charge":2,
"formula":"C5H16N4",
"notes":{
"original_bigg_ids":[
"agm_e"
]
},
"annotation":{
"bigg.metabolite":[
"agm"
],
"biocyc":[
"META:AGMATHINE"
],
"chebi":[
"CHEBI:17431",
"CHEBI:2514",
"CHEBI:18576",
"CHEBI:13747",
"CHEBI:58145",
"CHEBI:40556"
],
"hmdb":[
"HMDB60259",
"HMDB01432"
],
"inchi_key":[
"QYPPJABKJHAVHS-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00179"
],
"metanetx.chemical":[
"MNXM328"
],
"reactome.compound":[
"351164"
],
"sabiork":[
"4059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00152"
]
}
},
{
"id":"acorn_c",
"name":"N2-Acetyl-L-ornithine",
"compartment":"c",
"charge":0,
"formula":"C7H14N2O3",
"notes":{
"original_bigg_ids":[
"acorn_c"
]
},
"annotation":{
"bigg.metabolite":[
"acorn"
],
"biocyc":[
"META:N-ALPHA-ACETYLORNITHINE"
],
"chebi":[
"CHEBI:21814",
"CHEBI:7368",
"CHEBI:16543",
"CHEBI:57805",
"CHEBI:40771",
"CHEBI:12634"
],
"hmdb":[
"HMDB06489",
"HMDB03357"
],
"inchi_key":[
"JRLGPAXAGHMNOL-LURJTMIESA-N"
],
"kegg.compound":[
"C00437"
],
"metanetx.chemical":[
"MNXM817"
],
"sabiork":[
"2048"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00342"
]
}
},
{
"id":"arbtn_c",
"name":"Aerobactin minus Fe3",
"compartment":"c",
"charge":-3,
"formula":"C22H33N4O13",
"notes":{
"original_bigg_ids":[
"arbtn_c"
]
},
"annotation":{
"bigg.metabolite":[
"arbtn"
],
"metanetx.chemical":[
"MNXM96506"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15411"
]
}
},
{
"id":"pa120_c",
"name":"1,2-didodecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C27H51O8P1",
"notes":{
"original_bigg_ids":[
"pa120_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa120"
],
"metanetx.chemical":[
"MNXM90509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15521"
]
}
},
{
"id":"fe2_c",
"name":"Fe2+ mitochondria",
"compartment":"c",
"charge":2,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe2_c"
]
},
"annotation":{
"bigg.metabolite":[
"fe2"
],
"biocyc":[
"META:FE+2"
],
"chebi":[
"CHEBI:29033",
"CHEBI:49599",
"CHEBI:13321",
"CHEBI:21129",
"CHEBI:13319",
"CHEBI:24876",
"CHEBI:34754"
],
"hmdb":[
"HMDB00692"
],
"inchi_key":[
"CWYNVVGOOAEACU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14818"
],
"metanetx.chemical":[
"MNXM111"
],
"sabiork":[
"1275"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10515"
]
}
},
{
"id":"orn_c",
"name":"Ornithine",
"compartment":"c",
"charge":1,
"formula":"C5H13N2O2",
"notes":{
"original_bigg_ids":[
"orn_c"
]
},
"annotation":{
"bigg.metabolite":[
"orn"
],
"biocyc":[
"META:L-ORNITHINE"
],
"chebi":[
"CHEBI:21367",
"CHEBI:44667",
"CHEBI:46912",
"CHEBI:11448",
"CHEBI:7784",
"CHEBI:46913",
"CHEBI:19370",
"CHEBI:13148",
"CHEBI:15729",
"CHEBI:32964",
"CHEBI:6280",
"CHEBI:46911",
"CHEBI:46914",
"CHEBI:18257"
],
"hmdb":[
"HMDB62718",
"HMDB04984",
"HMDB00214",
"HMDB00818",
"HMDB32455",
"HMDB62654"
],
"inchi_key":[
"AHLPHDHHMVZTML-BYPYZUCNSA-O"
],
"kegg.compound":[
"C00077",
"C01602"
],
"kegg.drug":[
"D08302"
],
"lipidmaps":[
"LMFA01100057"
],
"metanetx.chemical":[
"MNXM89689"
],
"reactome.compound":[
"29498",
"113586",
"113585"
],
"sabiork":[
"1290"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00064",
"cpd19016"
]
}
},
{
"id":"1ddecg3p_c",
"name":"1-dodecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C15H29O7P1",
"notes":{
"original_bigg_ids":[
"1ddecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1ddecg3p"
],
"biocyc":[
"META:CPD0-2200"
],
"chebi":[
"CHEBI:72682",
"CHEBI:62840"
],
"hmdb":[
"HMDB62319"
],
"inchi_key":[
"STTKJLVEXMKLNA-CQSZACIVSA-L"
],
"lipidmaps":[
"LMGP10050015"
],
"metanetx.chemical":[
"MNXM4232"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15325"
],
"slm":[
"000000650"
]
}
},
{
"id":"acolipa_p",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A",
"compartment":"p",
"charge":-9,
"formula":"C181H314N3O103P4",
"notes":{
"original_bigg_ids":[
"acolipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"acolipa"
],
"biocyc":[
"META:CPD0-2293"
],
"inchi_key":[
"IOAOXSQGQQYOQU-WSFSDJJVSA-E"
],
"metanetx.chemical":[
"MNXM37330"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15392"
]
}
},
{
"id":"arbtn_fe3_c",
"name":"Aerobactin",
"compartment":"c",
"charge":0,
"formula":"C22H33FeN4O13",
"notes":{
"original_bigg_ids":[
"arbtn_fe3_c"
]
},
"annotation":{
"bigg.metabolite":[
"arbtn_fe3"
],
"biocyc":[
"META:AEROBACTIN",
"META:CPD0-2234"
],
"chebi":[
"CHEBI:18157",
"CHEBI:13745",
"CHEBI:2499",
"CHEBI:58396"
],
"hmdb":[
"HMDB04051"
],
"inchi_key":[
"KDHHWXGBNUCREU-HOTGVXAUSA-K"
],
"kegg.compound":[
"C05554"
],
"metanetx.chemical":[
"MNXM1464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03294",
"cpd26452"
]
}
},
{
"id":"pa140_c",
"name":"1,2-ditetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C31H59O8P1",
"notes":{
"original_bigg_ids":[
"pa140_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa140"
],
"biocyc":[
"META:CPD0-1425"
],
"chebi":[
"CHEBI:84266",
"CHEBI:62085",
"CHEBI:83321",
"CHEBI:83550"
],
"inchi_key":[
"OZSITQMWYBNPMW-GDLZYMKVSA-L"
],
"lipidmaps":[
"LMGP10010026"
],
"metanetx.chemical":[
"MNXM51017"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26150",
"cpd15522"
],
"slm":[
"000025497"
]
}
},
{
"id":"fmnh2_c",
"name":"Reduced FMN",
"compartment":"c",
"charge":-2,
"formula":"C17H21N4O9P",
"notes":{
"original_bigg_ids":[
"fmnh2_c"
]
},
"annotation":{
"bigg.metabolite":[
"fmnh2"
],
"biocyc":[
"META:FMNH2"
],
"chebi":[
"CHEBI:133886",
"CHEBI:21128",
"CHEBI:8782",
"CHEBI:13318",
"CHEBI:42517",
"CHEBI:57618",
"CHEBI:16048",
"CHEBI:15017"
],
"hmdb":[
"HMDB01142"
],
"inchi_key":[
"YTNIXZGTHTVJBW-SCRDCRAPSA-L"
],
"kegg.compound":[
"C01847"
],
"metanetx.chemical":[
"MNXM208"
],
"sabiork":[
"2325"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01270"
]
}
},
{
"id":"acolipa_e",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A",
"compartment":"e",
"charge":-9,
"formula":"C181H314N3O103P4",
"notes":{
"original_bigg_ids":[
"acolipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"acolipa"
],
"biocyc":[
"META:CPD0-2293"
],
"inchi_key":[
"IOAOXSQGQQYOQU-WSFSDJJVSA-E"
],
"metanetx.chemical":[
"MNXM37330"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15392"
]
}
},
{
"id":"fmn_c",
"name":"FMN C17H19N4O9P",
"compartment":"c",
"charge":-2,
"formula":"C17H19N4O9P",
"notes":{
"original_bigg_ids":[
"fmn_c"
]
},
"annotation":{
"bigg.metabolite":[
"fmn"
],
"biocyc":[
"META:FMN"
],
"chebi":[
"CHEBI:58210",
"CHEBI:4960",
"CHEBI:42587",
"CHEBI:17621",
"CHEBI:21127",
"CHEBI:13317"
],
"hmdb":[
"HMDB01520"
],
"inchi_key":[
"ANKZYBDXHMZBDK-SCRDCRAPSA-K"
],
"kegg.compound":[
"C00061"
],
"metanetx.chemical":[
"MNXM119"
],
"reactome.compound":[
"73524"
],
"sabiork":[
"1673"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00050"
]
}
},
{
"id":"1tdecg3p_c",
"name":"1-tetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C17H33O7P1",
"notes":{
"original_bigg_ids":[
"1tdecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1tdecg3p"
],
"biocyc":[
"META:CPD-18379"
],
"chebi":[
"CHEBI:62833",
"CHEBI:72683"
],
"hmdb":[
"HMDB62321"
],
"inchi_key":[
"FAZBDRGXCKPVJU-MRXNPFEDSA-L"
],
"lipidmaps":[
"LMGP10050007"
],
"metanetx.chemical":[
"MNXM3426"
],
"reactome.compound":[
"8878649"
],
"sabiork":[
"26679"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15331"
],
"slm":[
"000000647"
]
}
},
{
"id":"rbflvrd_c",
"name":"Reduced riboflavin",
"compartment":"c",
"charge":0,
"formula":"C17H22N4O6",
"notes":{
"original_bigg_ids":[
"rbflvrd_c"
]
},
"annotation":{
"bigg.metabolite":[
"rbflvrd"
],
"biocyc":[
"META:CPD-316"
],
"chebi":[
"CHEBI:26527",
"CHEBI:8798",
"CHEBI:17607"
],
"inchi_key":[
"SGSVWAYHEWEQET-SCRDCRAPSA-N"
],
"kegg.compound":[
"C01007"
],
"metanetx.chemical":[
"MNXM1246"
],
"sabiork":[
"2213"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00739"
]
}
},
{
"id":"ribflv_c",
"name":"Riboflavin C17H20N4O6",
"compartment":"c",
"charge":0,
"formula":"C17H20N4O6",
"notes":{
"original_bigg_ids":[
"ribflv_c"
]
},
"annotation":{
"bigg.metabolite":[
"ribflv"
],
"biocyc":[
"META:RIBOFLAVIN"
],
"chebi":[
"CHEBI:57986",
"CHEBI:17015",
"CHEBI:8843",
"CHEBI:45214",
"CHEBI:15044",
"CHEBI:529204",
"CHEBI:27299"
],
"hmdb":[
"HMDB00244"
],
"inchi_key":[
"AUNGANRZJHBGPY-SCRDCRAPSA-M"
],
"kegg.compound":[
"C00255"
],
"kegg.drug":[
"D00050"
],
"metanetx.chemical":[
"MNXM270"
],
"reactome.compound":[
"3165253",
"196931"
],
"sabiork":[
"1996"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00220"
]
}
},
{
"id":"acon_T_c",
"name":"Trans-Aconitate",
"compartment":"c",
"charge":-3,
"formula":"C6H3O6",
"notes":{
"original_bigg_ids":[
"acon_T_c"
]
},
"annotation":{
"bigg.metabolite":[
"acon_T"
],
"biocyc":[
"META:CPD-225"
],
"chebi":[
"CHEBI:10719",
"CHEBI:22210",
"CHEBI:27069",
"CHEBI:15708",
"CHEBI:46108",
"CHEBI:27070",
"CHEBI:12869",
"CHEBI:22211",
"CHEBI:32806",
"CHEBI:12878"
],
"hmdb":[
"HMDB00958"
],
"inchi_key":[
"GTZCVFVGUGFEME-HNQUOIGGSA-K"
],
"kegg.compound":[
"C02341"
],
"metanetx.chemical":[
"MNXM1388"
],
"sabiork":[
"6151"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01563"
]
}
},
{
"id":"pa141_c",
"name":"1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C31H55O8P1",
"notes":{
"original_bigg_ids":[
"pa141_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa141"
],
"metanetx.chemical":[
"MNXM90512"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15523"
]
}
},
{
"id":"acon_C_c",
"name":"Cis-Aconitate",
"compartment":"c",
"charge":-3,
"formula":"C6H3O6",
"notes":{
"original_bigg_ids":[
"acon_C_c"
]
},
"annotation":{
"bigg.metabolite":[
"acon_C"
],
"biocyc":[
"META:CIS-ACONITATE"
],
"chebi":[
"CHEBI:23306",
"CHEBI:16383",
"CHEBI:12798",
"CHEBI:32805",
"CHEBI:23308",
"CHEBI:10482"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/643481e5-a35b-477e-8665-70f4dca66baa"
],
"hmdb":[
"HMDB00461",
"HMDB00072"
],
"inchi_key":[
"GTZCVFVGUGFEME-IWQZZHSRSA-K"
],
"kegg.compound":[
"C00417"
],
"metanetx.chemical":[
"MNXM813"
],
"sabiork":[
"2043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00331"
]
}
},
{
"id":"arbtn_fe3_p",
"name":"Aerobactin",
"compartment":"p",
"charge":0,
"formula":"C22H33FeN4O13",
"notes":{
"original_bigg_ids":[
"arbtn_fe3_p"
]
},
"annotation":{
"bigg.metabolite":[
"arbtn_fe3"
],
"biocyc":[
"META:AEROBACTIN",
"META:CPD0-2234"
],
"chebi":[
"CHEBI:18157",
"CHEBI:13745",
"CHEBI:2499",
"CHEBI:58396"
],
"hmdb":[
"HMDB04051"
],
"inchi_key":[
"KDHHWXGBNUCREU-HOTGVXAUSA-K"
],
"kegg.compound":[
"C05554"
],
"metanetx.chemical":[
"MNXM1464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03294",
"cpd26452"
]
}
},
{
"id":"1tdec7eg3p_c",
"name":"1-tetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C17H31O7P1",
"notes":{
"original_bigg_ids":[
"1tdec7eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1tdec7eg3p"
],
"metanetx.chemical":[
"MNXM91053"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15330"
]
}
},
{
"id":"1hdecg3p_c",
"name":"1-hexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C19H37O7P1",
"notes":{
"original_bigg_ids":[
"1hdecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1hdecg3p"
],
"metanetx.chemical":[
"MNXM90586"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15327"
]
}
},
{
"id":"arbtn_fe3_e",
"name":"Aerobactin",
"compartment":"e",
"charge":0,
"formula":"C22H33FeN4O13",
"notes":{
"original_bigg_ids":[
"arbtn_fe3_e"
]
},
"annotation":{
"bigg.metabolite":[
"arbtn_fe3"
],
"biocyc":[
"META:AEROBACTIN",
"META:CPD0-2234"
],
"chebi":[
"CHEBI:18157",
"CHEBI:13745",
"CHEBI:2499",
"CHEBI:58396"
],
"hmdb":[
"HMDB04051"
],
"inchi_key":[
"KDHHWXGBNUCREU-HOTGVXAUSA-K"
],
"kegg.compound":[
"C05554"
],
"metanetx.chemical":[
"MNXM1464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03294",
"cpd26452"
]
}
},
{
"id":"pa160_c",
"name":"1,2-dihexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C35H67O8P1",
"notes":{
"original_bigg_ids":[
"pa160_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa160"
],
"biocyc":[
"META:CPD0-1422"
],
"chebi":[
"CHEBI:72859",
"CHEBI:73246"
],
"hmdb":[
"HMDB00674",
"HMDB07857"
],
"inchi_key":[
"PORPENFLTBBHSG-MGBGTMOVSA-L"
],
"lipidmaps":[
"LMGP10010027"
],
"metanetx.chemical":[
"MNXM17312"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26147",
"cpd15524"
],
"slm":[
"000000808"
]
}
},
{
"id":"1hdec9eg3p_c",
"name":"1-hexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C19H35O7P1",
"notes":{
"original_bigg_ids":[
"1hdec9eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1hdec9eg3p"
],
"metanetx.chemical":[
"MNXM91047"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15326"
]
}
},
{
"id":"pa161_c",
"name":"1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C35H63O8P1",
"notes":{
"original_bigg_ids":[
"pa161_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa161"
],
"metanetx.chemical":[
"MNXM90510"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15525"
]
}
},
{
"id":"1odecg3p_c",
"name":"1-octadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C21H41O7P1",
"notes":{
"original_bigg_ids":[
"1odecg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1odecg3p"
],
"biocyc":[
"META:CPD0-2113"
],
"chebi":[
"CHEBI:74850",
"CHEBI:74565"
],
"hmdb":[
"HMDB07854"
],
"inchi_key":[
"LAYXSTYJRSVXIH-HXUWFJFHSA-L"
],
"lipidmaps":[
"LMGP10050005"
],
"metanetx.chemical":[
"MNXM32950"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15329"
],
"slm":[
"000000640"
]
}
},
{
"id":"cit_c",
"name":"Citrate",
"compartment":"c",
"charge":-3,
"formula":"C6H5O7",
"notes":{
"original_bigg_ids":[
"cit_c"
]
},
"annotation":{
"bigg.metabolite":[
"cit"
],
"biocyc":[
"META:CIT"
],
"chebi":[
"CHEBI:35802",
"CHEBI:133748",
"CHEBI:35809",
"CHEBI:76049",
"CHEBI:41523",
"CHEBI:35810",
"CHEBI:30769",
"CHEBI:13999",
"CHEBI:23322",
"CHEBI:35808",
"CHEBI:42563",
"CHEBI:16947",
"CHEBI:132362",
"CHEBI:35804",
"CHEBI:23321",
"CHEBI:3727",
"CHEBI:35806"
],
"hmdb":[
"HMDB00094"
],
"inchi_key":[
"KRKNYBCHXYNGOX-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00158"
],
"kegg.drug":[
"D00037"
],
"metanetx.chemical":[
"MNXM131"
],
"reactome.compound":[
"29654",
"433138",
"76190"
],
"sabiork":[
"1952"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00137"
]
}
},
{
"id":"pa180_c",
"name":"1,2-dioctadecanoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C39H75O8P1",
"notes":{
"original_bigg_ids":[
"pa180_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa180"
],
"biocyc":[
"META:CPD0-1423"
],
"chebi":[
"CHEBI:82921",
"CHEBI:83774"
],
"inchi_key":[
"YFWHNAWEOZTIPI-DIPNUNPCSA-L"
],
"lipidmaps":[
"LMGP10010028"
],
"metanetx.chemical":[
"MNXM51279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15526",
"cpd26148"
],
"slm":[
"000025492"
]
}
},
{
"id":"pa181_c",
"name":"1,2-dioctadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C39H71O8P1",
"notes":{
"original_bigg_ids":[
"pa181_c"
]
},
"annotation":{
"bigg.metabolite":[
"pa181"
],
"metanetx.chemical":[
"MNXM90511"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15527"
]
}
},
{
"id":"icit_c",
"name":"Isocitrate",
"compartment":"c",
"charge":-3,
"formula":"C6H5O7",
"notes":{
"original_bigg_ids":[
"icit_c"
]
},
"annotation":{
"bigg.metabolite":[
"icit"
],
"chebi":[
"CHEBI:16087",
"CHEBI:36454",
"CHEBI:5998",
"CHEBI:24886",
"CHEBI:36453",
"CHEBI:14465",
"CHEBI:30887",
"CHEBI:24884"
],
"hmdb":[
"HMDB00193"
],
"inchi_key":[
"ODBLHEXUDAPZAU-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00311"
],
"metanetx.chemical":[
"MNXM89661"
],
"sabiork":[
"2013"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00260"
]
}
},
{
"id":"1odec11eg3p_c",
"name":"1-octadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C21H39O7P1",
"notes":{
"original_bigg_ids":[
"1odec11eg3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"1odec11eg3p"
],
"metanetx.chemical":[
"MNXM91049"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15328"
]
}
},
{
"id":"acg5sa_c",
"name":"N-Acetyl-L-glutamate 5-semialdehyde",
"compartment":"c",
"charge":-1,
"formula":"C7H10NO4",
"notes":{
"original_bigg_ids":[
"acg5sa_c"
]
},
"annotation":{
"bigg.metabolite":[
"acg5sa"
],
"biocyc":[
"META:CPD-469"
],
"chebi":[
"CHEBI:16319",
"CHEBI:11493",
"CHEBI:12577",
"CHEBI:7152",
"CHEBI:29123",
"CHEBI:12461",
"CHEBI:21551"
],
"hmdb":[
"HMDB06488"
],
"inchi_key":[
"BCPSFKBPHHBDAI-LURJTMIESA-M"
],
"kegg.compound":[
"C01250"
],
"metanetx.chemical":[
"MNXM1062"
],
"sabiork":[
"2267"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00918"
]
}
},
{
"id":"rhcys_c",
"name":"S-Ribosyl-L-homocysteine",
"compartment":"c",
"charge":0,
"formula":"C9H17NO6S",
"notes":{
"original_bigg_ids":[
"rhcys_c"
]
},
"annotation":{
"bigg.metabolite":[
"rhcys"
],
"biocyc":[
"META:CPD-564"
],
"chebi":[
"CHEBI:17575",
"CHEBI:12750",
"CHEBI:90364",
"CHEBI:8968",
"CHEBI:58195",
"CHEBI:22071",
"CHEBI:45383"
],
"inchi_key":[
"IQFWYNFDWRYSRA-BLELIYKESA-N"
],
"kegg.compound":[
"C03539"
],
"metanetx.chemical":[
"MNXM1777"
],
"sabiork":[
"6692"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02227"
]
}
},
{
"id":"apoACP_c",
"name":"Apoprotein [acyl carrier protein]",
"compartment":"c",
"charge":0,
"formula":"C373H583N94O136S2",
"notes":{
"original_bigg_ids":[
"apoACP_c"
]
},
"annotation":{
"bigg.metabolite":[
"apoACP"
],
"metanetx.chemical":[
"MNXM2214"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29672",
"cpd12370"
]
}
},
{
"id":"ahcys_c",
"name":"S-Adenosyl-L-homocysteine",
"compartment":"c",
"charge":0,
"formula":"C14H20N6O5S",
"notes":{
"original_bigg_ids":[
"ahcys_c"
]
},
"annotation":{
"bigg.metabolite":[
"ahcys"
],
"biocyc":[
"META:ADENOSYL-HOMO-CYS"
],
"chebi":[
"CHEBI:12741",
"CHEBI:45495",
"CHEBI:8945",
"CHEBI:16680",
"CHEBI:67009",
"CHEBI:22034",
"CHEBI:57856",
"CHEBI:12761",
"CHEBI:12759"
],
"hmdb":[
"HMDB00939"
],
"inchi_key":[
"ZJUKTBDSGOFHSH-WFMPWKQPSA-N"
],
"kegg.compound":[
"C00021"
],
"metanetx.chemical":[
"MNXM19"
],
"reactome.compound":[
"2162252",
"77502",
"5278409",
"71285"
],
"sabiork":[
"1274"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00019"
]
}
},
{
"id":"pap_c",
"name":"Adenosine 3',5'-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C10H11N5O10P2",
"notes":{
"original_bigg_ids":[
"pap_c"
]
},
"annotation":{
"bigg.metabolite":[
"pap"
],
"biocyc":[
"META:3-5-ADP"
],
"chebi":[
"CHEBI:17985",
"CHEBI:13735",
"CHEBI:22240",
"CHEBI:2475",
"CHEBI:58343"
],
"hmdb":[
"HMDB01468",
"HMDB00061"
],
"inchi_key":[
"WHTCPDAXWFLDIH-KQYNXXCUSA-J"
],
"kegg.compound":[
"C00054"
],
"metanetx.chemical":[
"MNXM45"
],
"reactome.compound":[
"158466",
"742343",
"8942170",
"6809360"
],
"sabiork":[
"1672"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00045"
]
}
},
{
"id":"fe3_e",
"name":"Iron (Fe3+)",
"compartment":"e",
"charge":3,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe3_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe3"
],
"biocyc":[
"META:FE+3"
],
"chebi":[
"CHEBI:49595",
"CHEBI:13320",
"CHEBI:24877",
"CHEBI:21130",
"CHEBI:29034",
"CHEBI:34755"
],
"hmdb":[
"HMDB12943"
],
"inchi_key":[
"VTLYFUHAOXGGBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14819"
],
"metanetx.chemical":[
"MNXM196"
],
"reactome.compound":[
"917966",
"111736",
"917943",
"912519",
"912516"
],
"sabiork":[
"1361"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10516"
]
}
},
{
"id":"fprica_c",
"name":"5-Formamido-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide",
"compartment":"c",
"charge":-2,
"formula":"C10H13N4O9P",
"notes":{
"original_bigg_ids":[
"fprica_c"
]
},
"annotation":{
"bigg.metabolite":[
"fprica"
],
"biocyc":[
"META:PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE"
],
"chebi":[
"CHEBI:18967",
"CHEBI:12125",
"CHEBI:574",
"CHEBI:58467",
"CHEBI:18381"
],
"hmdb":[
"HMDB62708",
"HMDB01439"
],
"inchi_key":[
"ABCOOORLYAOBOZ-KQYNXXCUSA-L"
],
"kegg.compound":[
"C04734"
],
"metanetx.chemical":[
"MNXM456"
],
"reactome.compound":[
"111427"
],
"sabiork":[
"1892"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02884"
]
}
},
{
"id":"acser_e",
"name":"O-Acetyl-L-serine",
"compartment":"e",
"charge":0,
"formula":"C5H9NO4",
"notes":{
"original_bigg_ids":[
"acser_e"
]
},
"annotation":{
"bigg.metabolite":[
"acser"
],
"biocyc":[
"META:ACETYLSERINE"
],
"chebi":[
"CHEBI:44568",
"CHEBI:58340",
"CHEBI:7668",
"CHEBI:21938",
"CHEBI:12724",
"CHEBI:17981",
"CHEBI:12710",
"CHEBI:12685"
],
"hmdb":[
"HMDB03011"
],
"inchi_key":[
"VZXPDPZARILFQX-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00979"
],
"metanetx.chemical":[
"MNXM418"
],
"reactome.compound":[
"936709"
],
"sabiork":[
"2202"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00722"
]
}
},
{
"id":"10fthf_c",
"name":"10-Formyltetrahydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C20H21N7O7",
"notes":{
"original_bigg_ids":[
"10fthf_c"
]
},
"annotation":{
"bigg.metabolite":[
"10fthf"
],
"biocyc":[
"META:10-FORMYL-THF"
],
"chebi":[
"CHEBI:19108",
"CHEBI:15637",
"CHEBI:698",
"CHEBI:19109",
"CHEBI:11304",
"CHEBI:57454"
],
"hmdb":[
"HMDB00972"
],
"inchi_key":[
"AUFGTPPARQZWDO-YPMHNXCESA-L"
],
"kegg.compound":[
"C00234"
],
"metanetx.chemical":[
"MNXM237"
],
"reactome.compound":[
"5389850",
"419151"
],
"sabiork":[
"1318"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00201"
]
}
},
{
"id":"acser_p",
"name":"O-Acetyl-L-serine",
"compartment":"p",
"charge":0,
"formula":"C5H9NO4",
"notes":{
"original_bigg_ids":[
"acser_p"
]
},
"annotation":{
"bigg.metabolite":[
"acser"
],
"biocyc":[
"META:ACETYLSERINE"
],
"chebi":[
"CHEBI:44568",
"CHEBI:58340",
"CHEBI:7668",
"CHEBI:21938",
"CHEBI:12724",
"CHEBI:17981",
"CHEBI:12710",
"CHEBI:12685"
],
"hmdb":[
"HMDB03011"
],
"inchi_key":[
"VZXPDPZARILFQX-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00979"
],
"metanetx.chemical":[
"MNXM418"
],
"reactome.compound":[
"936709"
],
"sabiork":[
"2202"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00722"
]
}
},
{
"id":"arbtn_e",
"name":"Aerobactin minus Fe3",
"compartment":"e",
"charge":-3,
"formula":"C22H33N4O13",
"notes":{
"original_bigg_ids":[
"arbtn_e"
]
},
"annotation":{
"bigg.metabolite":[
"arbtn"
],
"metanetx.chemical":[
"MNXM96506"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15411"
]
}
},
{
"id":"thf_c",
"name":"5,6,7,8-Tetrahydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C19H21N7O6",
"notes":{
"original_bigg_ids":[
"thf_c"
]
},
"annotation":{
"bigg.metabolite":[
"thf"
],
"biocyc":[
"META:THF"
],
"chebi":[
"CHEBI:57453",
"CHEBI:46069",
"CHEBI:20506",
"CHEBI:12075",
"CHEBI:9482",
"CHEBI:15635",
"CHEBI:18606",
"CHEBI:10931",
"CHEBI:15220",
"CHEBI:68437"
],
"inchi_key":[
"MSTNYGQPCMXVAQ-RYUDHWBXSA-L"
],
"kegg.compound":[
"C00101"
],
"metanetx.chemical":[
"MNXM79"
],
"reactome.compound":[
"111355",
"200671"
],
"sabiork":[
"1297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29254"
]
}
},
{
"id":"acser_c",
"name":"O-Acetyl-L-serine",
"compartment":"c",
"charge":0,
"formula":"C5H9NO4",
"notes":{
"original_bigg_ids":[
"acser_c"
]
},
"annotation":{
"bigg.metabolite":[
"acser"
],
"biocyc":[
"META:ACETYLSERINE"
],
"chebi":[
"CHEBI:44568",
"CHEBI:58340",
"CHEBI:7668",
"CHEBI:21938",
"CHEBI:12724",
"CHEBI:17981",
"CHEBI:12710",
"CHEBI:12685"
],
"hmdb":[
"HMDB03011"
],
"inchi_key":[
"VZXPDPZARILFQX-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00979"
],
"metanetx.chemical":[
"MNXM418"
],
"reactome.compound":[
"936709"
],
"sabiork":[
"2202"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00722"
]
}
},
{
"id":"ac_p",
"name":"Acetate",
"compartment":"p",
"charge":-1,
"formula":"C2H3O2",
"notes":{
"original_bigg_ids":[
"ac_p"
]
},
"annotation":{
"bigg.metabolite":[
"ac"
],
"biocyc":[
"META:ACET"
],
"chebi":[
"CHEBI:13704",
"CHEBI:22165",
"CHEBI:22169",
"CHEBI:40480",
"CHEBI:15366",
"CHEBI:2387",
"CHEBI:30089",
"CHEBI:40486"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/9e26dcbe-4db9-46a0-8614-9f03545032d2",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/5e4989fc-13d3-45d4-ad57-3be380a9d3c0",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a8f0be58-24e8-441b-8d81-a516a0ead4b3",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/d45256fe-61fa-4f5b-bb16-91a3d615e3d8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/3e2d750f-df31-4445-9255-163c627e9b4a"
],
"hmdb":[
"HMDB00042"
],
"inchi_key":[
"QTBSBXVTEAMEQO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00033"
],
"kegg.drug":[
"D00010"
],
"lipidmaps":[
"LMFA01010002"
],
"metanetx.chemical":[
"MNXM26"
],
"reactome.compound":[
"1524044",
"390305",
"113539",
"2022890",
"29416"
],
"sabiork":[
"1278"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00029"
],
"slm":[
"000000449"
]
}
},
{
"id":"air_c",
"name":"5-amino-1-(5-phospho-D-ribosyl)imidazole",
"compartment":"c",
"charge":-2,
"formula":"C8H12N3O7P",
"notes":{
"original_bigg_ids":[
"air_c"
]
},
"annotation":{
"bigg.metabolite":[
"air"
],
"chebi":[
"CHEBI:28843",
"CHEBI:12101",
"CHEBI:18969",
"CHEBI:2655",
"CHEBI:58592"
],
"hmdb":[
"HMDB62575"
],
"inchi_key":[
"PDACUKOKVHBVHJ-ZRTZXPPTSA-M"
],
"metanetx.chemical":[
"MNXM162266"
],
"sbo":"SBO:0000247"
}
},
{
"id":"na1_c",
"name":"Sodium",
"compartment":"c",
"charge":1,
"formula":"Na",
"notes":{
"original_bigg_ids":[
"na1_c"
]
},
"annotation":{
"bigg.metabolite":[
"na1"
],
"biocyc":[
"META:NA+"
],
"chebi":[
"CHEBI:9175",
"CHEBI:49766",
"CHEBI:26717",
"CHEBI:29101"
],
"hmdb":[
"HMDB00588"
],
"inchi_key":[
"FKNQFGJONOIPTF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01330"
],
"metanetx.chemical":[
"MNXM27"
],
"reactome.compound":[
"2892454",
"83910",
"74113",
"425977",
"425971",
"2872443",
"425958"
],
"sabiork":[
"22"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00971"
]
}
},
{
"id":"arbtn_p",
"name":"Aerobactin minus Fe3",
"compartment":"p",
"charge":-3,
"formula":"C22H33N4O13",
"notes":{
"original_bigg_ids":[
"arbtn_p"
]
},
"annotation":{
"bigg.metabolite":[
"arbtn"
],
"metanetx.chemical":[
"MNXM96506"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15411"
]
}
},
{
"id":"5caiz_c",
"name":"5-phosphoribosyl-5-carboxyaminoimidazole",
"compartment":"c",
"charge":-3,
"formula":"C9H11N3O9P",
"notes":{
"original_bigg_ids":[
"5caiz_c"
]
},
"annotation":{
"bigg.metabolite":[
"5caiz"
],
"biocyc":[
"META:CPD0-181"
],
"chebi":[
"CHEBI:48000",
"CHEBI:58730"
],
"hmdb":[
"HMDB12268"
],
"inchi_key":[
"JHLXDWGVSYMXPL-XVFCMESISA-K"
],
"kegg.compound":[
"C15667"
],
"metanetx.chemical":[
"MNXM1409"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25523",
"cpd11310"
]
}
},
{
"id":"5aizc_c",
"name":"5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate",
"compartment":"c",
"charge":-3,
"formula":"C9H11N3O9P",
"notes":{
"original_bigg_ids":[
"5aizc_c"
]
},
"annotation":{
"bigg.metabolite":[
"5aizc"
],
"biocyc":[
"META:PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE"
],
"chebi":[
"CHEBI:77657",
"CHEBI:12103",
"CHEBI:575",
"CHEBI:18968",
"CHEBI:58564",
"CHEBI:28413",
"CHEBI:41336"
],
"hmdb":[
"HMDB06273",
"HMDB62424"
],
"inchi_key":[
"XFVULMDJZXYMSG-ZIYNGMLESA-L"
],
"kegg.compound":[
"C04751"
],
"metanetx.chemical":[
"MNXM507"
],
"reactome.compound":[
"111395"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02893"
]
}
},
{
"id":"arab__L_p",
"name":"L-Arabinose",
"compartment":"p",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"arab_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"arab__L"
],
"biocyc":[
"META:CPD-15699",
"META:L-ARABINOSE"
],
"chebi":[
"CHEBI:6182"
],
"inchi_key":[
"PYMYPHUHKUWMLA-VAYJURFESA-N"
],
"kegg.compound":[
"C11476"
],
"metanetx.chemical":[
"MNXM91126"
],
"sabiork":[
"1477"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27351",
"cpd19109"
]
}
},
{
"id":"na1_p",
"name":"Sodium",
"compartment":"p",
"charge":1,
"formula":"Na",
"notes":{
"original_bigg_ids":[
"na1_p"
]
},
"annotation":{
"bigg.metabolite":[
"na1"
],
"biocyc":[
"META:NA+"
],
"chebi":[
"CHEBI:9175",
"CHEBI:49766",
"CHEBI:26717",
"CHEBI:29101"
],
"hmdb":[
"HMDB00588"
],
"inchi_key":[
"FKNQFGJONOIPTF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01330"
],
"metanetx.chemical":[
"MNXM27"
],
"reactome.compound":[
"2892454",
"83910",
"74113",
"425977",
"425971",
"2872443",
"425958"
],
"sabiork":[
"22"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00971"
]
}
},
{
"id":"succoa_c",
"name":"Succinyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C25H35N7O19P3S",
"notes":{
"original_bigg_ids":[
"succoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"succoa"
],
"biocyc":[
"META:SUC-COA"
],
"chebi":[
"CHEBI:57292",
"CHEBI:10746",
"CHEBI:15127",
"CHEBI:15380",
"CHEBI:9310",
"CHEBI:45541",
"CHEBI:26811"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/359075fb-98d9-458d-ba82-db4020e753f3"
],
"hmdb":[
"HMDB01022"
],
"inchi_key":[
"VNOYUJKHFWYWIR-ITIYDSSPSA-I"
],
"kegg.compound":[
"C00091"
],
"lipidmaps":[
"LMFA07050370"
],
"metanetx.chemical":[
"MNXM92"
],
"reactome.compound":[
"70958"
],
"sabiork":[
"1931"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00078"
]
}
},
{
"id":"ac_e",
"name":"Acetate",
"compartment":"e",
"charge":-1,
"formula":"C2H3O2",
"notes":{
"original_bigg_ids":[
"ac_e"
]
},
"annotation":{
"bigg.metabolite":[
"ac"
],
"biocyc":[
"META:ACET"
],
"chebi":[
"CHEBI:13704",
"CHEBI:22165",
"CHEBI:22169",
"CHEBI:40480",
"CHEBI:15366",
"CHEBI:2387",
"CHEBI:30089",
"CHEBI:40486"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/9e26dcbe-4db9-46a0-8614-9f03545032d2",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/5e4989fc-13d3-45d4-ad57-3be380a9d3c0",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a8f0be58-24e8-441b-8d81-a516a0ead4b3",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/d45256fe-61fa-4f5b-bb16-91a3d615e3d8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/3e2d750f-df31-4445-9255-163c627e9b4a"
],
"hmdb":[
"HMDB00042"
],
"inchi_key":[
"QTBSBXVTEAMEQO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00033"
],
"kegg.drug":[
"D00010"
],
"lipidmaps":[
"LMFA01010002"
],
"metanetx.chemical":[
"MNXM26"
],
"reactome.compound":[
"1524044",
"390305",
"113539",
"2022890",
"29416"
],
"sabiork":[
"1278"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00029"
],
"slm":[
"000000449"
]
}
},
{
"id":"akg_p",
"name":"2-Oxoglutarate",
"compartment":"p",
"charge":-2,
"formula":"C5H4O5",
"notes":{
"original_bigg_ids":[
"akg_p"
]
},
"annotation":{
"bigg.metabolite":[
"akg"
],
"biocyc":[
"META:2-KETOGLUTARATE"
],
"chebi":[
"CHEBI:40661",
"CHEBI:16810",
"CHEBI:11638",
"CHEBI:30916",
"CHEBI:19749",
"CHEBI:1253",
"CHEBI:30915",
"CHEBI:19748"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5b0a94f6-d411-44fd-bcc1-fb79b4e697f5",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/6557f3f2-0ab8-494b-a865-8ce0eae788a9"
],
"hmdb":[
"HMDB00208",
"HMDB02812",
"HMDB62781"
],
"inchi_key":[
"KPGXRSRHYNQIFN-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00026"
],
"metanetx.chemical":[
"MNXM20"
],
"reactome.compound":[
"113594",
"561075",
"5278317",
"113671",
"29406",
"389537"
],
"sabiork":[
"1922"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00024"
]
}
},
{
"id":"ins_c",
"name":"Inosine",
"compartment":"c",
"charge":0,
"formula":"C10H12N4O5",
"notes":{
"original_bigg_ids":[
"ins_c"
]
},
"annotation":{
"bigg.metabolite":[
"ins"
],
"biocyc":[
"META:INOSINE"
],
"chebi":[
"CHEBI:17596",
"CHEBI:24841",
"CHEBI:5927",
"CHEBI:14456",
"CHEBI:44407"
],
"hmdb":[
"HMDB00195"
],
"inchi_key":[
"UGQMRVRMYYASKQ-KQYNXXCUSA-N"
],
"kegg.compound":[
"C00294"
],
"kegg.drug":[
"D00054"
],
"metanetx.chemical":[
"MNXM334"
],
"reactome.compound":[
"83927",
"83921"
],
"sabiork":[
"1868"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00246"
]
}
},
{
"id":"arab__L_e",
"name":"L-Arabinose",
"compartment":"e",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"arab_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"arab__L"
],
"biocyc":[
"META:CPD-15699",
"META:L-ARABINOSE"
],
"chebi":[
"CHEBI:6182"
],
"inchi_key":[
"PYMYPHUHKUWMLA-VAYJURFESA-N"
],
"kegg.compound":[
"C11476"
],
"metanetx.chemical":[
"MNXM91126"
],
"sabiork":[
"1477"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27351",
"cpd19109"
]
}
},
{
"id":"akg_e",
"name":"2-Oxoglutarate",
"compartment":"e",
"charge":-2,
"formula":"C5H4O5",
"notes":{
"original_bigg_ids":[
"akg_e"
]
},
"annotation":{
"bigg.metabolite":[
"akg"
],
"biocyc":[
"META:2-KETOGLUTARATE"
],
"chebi":[
"CHEBI:40661",
"CHEBI:16810",
"CHEBI:11638",
"CHEBI:30916",
"CHEBI:19749",
"CHEBI:1253",
"CHEBI:30915",
"CHEBI:19748"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/5b0a94f6-d411-44fd-bcc1-fb79b4e697f5",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/6557f3f2-0ab8-494b-a865-8ce0eae788a9"
],
"hmdb":[
"HMDB00208",
"HMDB02812",
"HMDB62781"
],
"inchi_key":[
"KPGXRSRHYNQIFN-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00026"
],
"metanetx.chemical":[
"MNXM20"
],
"reactome.compound":[
"113594",
"561075",
"5278317",
"113671",
"29406",
"389537"
],
"sabiork":[
"1922"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00024"
]
}
},
{
"id":"arg__L_c",
"name":"L-Arginine",
"compartment":"c",
"charge":1,
"formula":"C6H15N4O2",
"notes":{
"original_bigg_ids":[
"arg_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"arg__L"
],
"biocyc":[
"META:ARG"
],
"chebi":[
"CHEBI:32683",
"CHEBI:22616",
"CHEBI:2643",
"CHEBI:32681",
"CHEBI:13077",
"CHEBI:32682",
"CHEBI:16467",
"CHEBI:21235",
"CHEBI:42927",
"CHEBI:6185",
"CHEBI:32696",
"CHEBI:32695",
"CHEBI:29016",
"CHEBI:32697",
"CHEBI:133495"
],
"hmdb":[
"HMDB62762",
"HMDB00517"
],
"inchi_key":[
"ODKSFYDXXFIFQN-BYPYZUCNSA-O"
],
"kegg.compound":[
"C02385",
"C00062"
],
"kegg.drug":[
"D02982"
],
"metanetx.chemical":[
"MNXM70"
],
"reactome.compound":[
"351977",
"29468",
"374064",
"113530"
],
"sabiork":[
"2410",
"23080",
"80"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00051",
"cpd19021"
]
}
},
{
"id":"adn_c",
"name":"Adenosine",
"compartment":"c",
"charge":0,
"formula":"C10H13N5O4",
"notes":{
"original_bigg_ids":[
"adn_c"
]
},
"annotation":{
"bigg.metabolite":[
"adn"
],
"biocyc":[
"META:ADENOSINE"
],
"chebi":[
"CHEBI:22237",
"CHEBI:13734",
"CHEBI:40558",
"CHEBI:16335",
"CHEBI:40906",
"CHEBI:40911",
"CHEBI:40825",
"CHEBI:2472"
],
"hmdb":[
"HMDB04402",
"HMDB00050",
"HMDB04421",
"HMDB04401"
],
"inchi_key":[
"OIRDTQYFTABQOQ-KQYNXXCUSA-N"
],
"kegg.compound":[
"C00212"
],
"kegg.drug":[
"D00045"
],
"metanetx.chemical":[
"MNXM212"
],
"reactome.compound":[
"83908",
"83909",
"8857850"
],
"sabiork":[
"1402"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00182"
]
}
},
{
"id":"alaala_c",
"name":"D-Alanyl-D-alanine",
"compartment":"c",
"charge":0,
"formula":"C6H12N2O3",
"notes":{
"original_bigg_ids":[
"alaala_c"
]
},
"annotation":{
"bigg.metabolite":[
"alaala"
],
"biocyc":[
"META:D-ALA-D-ALA"
],
"chebi":[
"CHEBI:13749",
"CHEBI:4088",
"CHEBI:16576",
"CHEBI:57822",
"CHEBI:12900",
"CHEBI:20894"
],
"hmdb":[
"HMDB03459"
],
"inchi_key":[
"DEFJQIDDEAULHB-QWWZWVQMSA-N"
],
"kegg.compound":[
"C00993"
],
"metanetx.chemical":[
"MNXM669"
],
"sabiork":[
"2204"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00731"
]
}
},
{
"id":"4adcho_c",
"name":"4-amino-4-deoxychorismate",
"compartment":"c",
"charge":-1,
"formula":"C10H10NO5",
"notes":{
"original_bigg_ids":[
"4adcho_c"
]
},
"annotation":{
"bigg.metabolite":[
"4adcho"
],
"biocyc":[
"META:4-AMINO-4-DEOXYCHORISMATE"
],
"chebi":[
"CHEBI:35181",
"CHEBI:11956",
"CHEBI:18198",
"CHEBI:58406",
"CHEBI:1943",
"CHEBI:35180"
],
"inchi_key":[
"OIUJHGOLFKDBSU-HTQZYQBOSA-M"
],
"kegg.compound":[
"C11355"
],
"metanetx.chemical":[
"MNXM1458"
],
"sabiork":[
"13425"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08210"
]
}
},
{
"id":"arg__L_p",
"name":"L-Arginine",
"compartment":"p",
"charge":1,
"formula":"C6H15N4O2",
"notes":{
"original_bigg_ids":[
"arg_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"arg__L"
],
"biocyc":[
"META:ARG"
],
"chebi":[
"CHEBI:32683",
"CHEBI:22616",
"CHEBI:2643",
"CHEBI:32681",
"CHEBI:13077",
"CHEBI:32682",
"CHEBI:16467",
"CHEBI:21235",
"CHEBI:42927",
"CHEBI:6185",
"CHEBI:32696",
"CHEBI:32695",
"CHEBI:29016",
"CHEBI:32697",
"CHEBI:133495"
],
"hmdb":[
"HMDB62762",
"HMDB00517"
],
"inchi_key":[
"ODKSFYDXXFIFQN-BYPYZUCNSA-O"
],
"kegg.compound":[
"C02385",
"C00062"
],
"kegg.drug":[
"D02982"
],
"metanetx.chemical":[
"MNXM70"
],
"reactome.compound":[
"351977",
"29468",
"374064",
"113530"
],
"sabiork":[
"2410",
"23080",
"80"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00051",
"cpd19021"
]
}
},
{
"id":"alaala_p",
"name":"D-Alanyl-D-alanine",
"compartment":"p",
"charge":0,
"formula":"C6H12N2O3",
"notes":{
"original_bigg_ids":[
"alaala_p"
]
},
"annotation":{
"bigg.metabolite":[
"alaala"
],
"biocyc":[
"META:D-ALA-D-ALA"
],
"chebi":[
"CHEBI:13749",
"CHEBI:4088",
"CHEBI:16576",
"CHEBI:57822",
"CHEBI:12900",
"CHEBI:20894"
],
"hmdb":[
"HMDB03459"
],
"inchi_key":[
"DEFJQIDDEAULHB-QWWZWVQMSA-N"
],
"kegg.compound":[
"C00993"
],
"metanetx.chemical":[
"MNXM669"
],
"sabiork":[
"2204"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00731"
]
}
},
{
"id":"co2_p",
"name":"CO2 CO2",
"compartment":"p",
"charge":0,
"formula":"CO2",
"notes":{
"original_bigg_ids":[
"co2_p"
]
},
"annotation":{
"bigg.metabolite":[
"co2"
],
"biocyc":[
"META:CARBON-DIOXIDE"
],
"chebi":[
"CHEBI:23011",
"CHEBI:3283",
"CHEBI:48829",
"CHEBI:16526",
"CHEBI:13283",
"CHEBI:13285",
"CHEBI:13284",
"CHEBI:13282"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2ec3da94-5f50-4525-81b1-5607c5c7a3d3",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379"
],
"hmdb":[
"HMDB01967"
],
"inchi_key":[
"CURLTUGMZLYLDI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00011"
],
"kegg.drug":[
"D00004"
],
"metanetx.chemical":[
"MNXM13"
],
"reactome.compound":[
"29376",
"5668565",
"189480",
"1132345",
"113528",
"1237009",
"159751",
"389536",
"159942"
],
"sabiork":[
"1266"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00011"
]
}
},
{
"id":"4abz_c",
"name":"4-Aminobenzoate",
"compartment":"c",
"charge":-1,
"formula":"C7H6NO2",
"notes":{
"original_bigg_ids":[
"4abz_c"
]
},
"annotation":{
"bigg.metabolite":[
"4abz"
],
"biocyc":[
"META:P-AMINO-BENZOATE"
],
"chebi":[
"CHEBI:30753",
"CHEBI:20314",
"CHEBI:44778",
"CHEBI:11959",
"CHEBI:113372",
"CHEBI:20315",
"CHEBI:17836",
"CHEBI:1783"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a5ad09dc-a75c-4ad4-8917-a62ebefdc941"
],
"hmdb":[
"HMDB01392"
],
"inchi_key":[
"ALYNCZNDIQEVRV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00568"
],
"kegg.drug":[
"D02456"
],
"metanetx.chemical":[
"MNXM421"
],
"sabiork":[
"2099"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00443"
]
}
},
{
"id":"alaala_e",
"name":"D-Alanyl-D-alanine",
"compartment":"e",
"charge":0,
"formula":"C6H12N2O3",
"notes":{
"original_bigg_ids":[
"alaala_e"
]
},
"annotation":{
"bigg.metabolite":[
"alaala"
],
"biocyc":[
"META:D-ALA-D-ALA"
],
"chebi":[
"CHEBI:13749",
"CHEBI:4088",
"CHEBI:16576",
"CHEBI:57822",
"CHEBI:12900",
"CHEBI:20894"
],
"hmdb":[
"HMDB03459"
],
"inchi_key":[
"DEFJQIDDEAULHB-QWWZWVQMSA-N"
],
"kegg.compound":[
"C00993"
],
"metanetx.chemical":[
"MNXM669"
],
"sabiork":[
"2204"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00731"
]
}
},
{
"id":"LalaDglu_c",
"name":"L-alanine-D-glutamate",
"compartment":"c",
"charge":-1,
"formula":"C8H13N2O5",
"notes":{
"original_bigg_ids":[
"LalaDglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"LalaDglu"
],
"biocyc":[
"META:CPD0-2190"
],
"chebi":[
"CHEBI:61566",
"CHEBI:61395"
],
"inchi_key":[
"VYZAGTDAHUIRQA-CRCLSJGQSA-M"
],
"kegg.compound":[
"C20957"
],
"metanetx.chemical":[
"MNXM3630"
],
"sabiork":[
"22905"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15385"
]
}
},
{
"id":"gln__L_c",
"name":"L-Glutamine",
"compartment":"c",
"charge":0,
"formula":"C5H10N2O3",
"notes":{
"original_bigg_ids":[
"gln_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"gln__L"
],
"biocyc":[
"META:GLN"
],
"chebi":[
"CHEBI:42943",
"CHEBI:42899",
"CHEBI:32679",
"CHEBI:32678",
"CHEBI:58359",
"CHEBI:28300",
"CHEBI:42812",
"CHEBI:13110",
"CHEBI:18050",
"CHEBI:32666",
"CHEBI:6227",
"CHEBI:32665",
"CHEBI:21308",
"CHEBI:42814",
"CHEBI:5432",
"CHEBI:24316"
],
"hmdb":[
"HMDB00641"
],
"inchi_key":[
"ZDXPYRJPNDTMRX-VKHMYHEASA-N"
],
"kegg.compound":[
"C00064",
"C00303"
],
"kegg.drug":[
"D00015"
],
"metanetx.chemical":[
"MNXM37"
],
"reactome.compound":[
"113522",
"212615",
"29472"
],
"sabiork":[
"2011",
"74"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00253",
"cpd00053"
]
}
},
{
"id":"orn_p",
"name":"Ornithine",
"compartment":"p",
"charge":1,
"formula":"C5H13N2O2",
"notes":{
"original_bigg_ids":[
"orn_p"
]
},
"annotation":{
"bigg.metabolite":[
"orn"
],
"biocyc":[
"META:L-ORNITHINE"
],
"chebi":[
"CHEBI:21367",
"CHEBI:44667",
"CHEBI:46912",
"CHEBI:11448",
"CHEBI:7784",
"CHEBI:46913",
"CHEBI:19370",
"CHEBI:13148",
"CHEBI:15729",
"CHEBI:32964",
"CHEBI:6280",
"CHEBI:46911",
"CHEBI:46914",
"CHEBI:18257"
],
"hmdb":[
"HMDB62718",
"HMDB04984",
"HMDB00214",
"HMDB00818",
"HMDB32455",
"HMDB62654"
],
"inchi_key":[
"AHLPHDHHMVZTML-BYPYZUCNSA-O"
],
"kegg.compound":[
"C00077",
"C01602"
],
"kegg.drug":[
"D08302"
],
"lipidmaps":[
"LMFA01100057"
],
"metanetx.chemical":[
"MNXM89689"
],
"reactome.compound":[
"29498",
"113586",
"113585"
],
"sabiork":[
"1290"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00064",
"cpd19016"
]
}
},
{
"id":"LalaLglu_c",
"name":"L-alanine-L-glutamate",
"compartment":"c",
"charge":-1,
"formula":"C8H13N2O5",
"notes":{
"original_bigg_ids":[
"LalaLglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"LalaLglu"
],
"biocyc":[
"META:CPD0-1445"
],
"chebi":[
"CHEBI:61396",
"CHEBI:61565"
],
"inchi_key":[
"VYZAGTDAHUIRQA-WHFBIAKZSA-M"
],
"kegg.compound":[
"C20958"
],
"metanetx.chemical":[
"MNXM4026"
],
"sabiork":[
"22899"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15388"
]
}
},
{
"id":"argsuc_c",
"name":"N(omega)-(L-Arginino)succinate",
"compartment":"c",
"charge":-1,
"formula":"C10H17N4O6",
"notes":{
"original_bigg_ids":[
"argsuc_c"
]
},
"annotation":{
"bigg.metabolite":[
"argsuc"
],
"biocyc":[
"META:L-ARGININO-SUCCINATE"
],
"chebi":[
"CHEBI:7098",
"CHEBI:57472",
"CHEBI:15682",
"CHEBI:10960",
"CHEBI:21475"
],
"hmdb":[
"HMDB00052",
"HMDB01006"
],
"inchi_key":[
"KDZOASGQNOPSCU-ZBHICJROSA-M"
],
"kegg.compound":[
"C03406"
],
"metanetx.chemical":[
"MNXM722743"
],
"reactome.compound":[
"34575"
],
"sabiork":[
"4057"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02152",
"cpd29673"
]
}
},
{
"id":"chor_c",
"name":"Chorismate",
"compartment":"c",
"charge":-2,
"formula":"C10H8O6",
"notes":{
"original_bigg_ids":[
"chor_c"
]
},
"annotation":{
"bigg.metabolite":[
"chor"
],
"biocyc":[
"META:CHORISMATE"
],
"chebi":[
"CHEBI:23225",
"CHEBI:3677",
"CHEBI:23227",
"CHEBI:17333",
"CHEBI:29748",
"CHEBI:13993"
],
"hmdb":[
"HMDB12199"
],
"inchi_key":[
"WTFXTQVDAKGDEY-HTQZYQBOSA-L"
],
"kegg.compound":[
"C00251"
],
"metanetx.chemical":[
"MNXM337"
],
"reactome.compound":[
"964856"
],
"sabiork":[
"1992"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00216"
]
}
},
{
"id":"ala__L_c",
"name":"L-Alanine",
"compartment":"c",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"ala__L"
],
"biocyc":[
"META:L-ALPHA-ALANINE"
],
"chebi":[
"CHEBI:21216",
"CHEBI:32440",
"CHEBI:2539",
"CHEBI:46308",
"CHEBI:40735",
"CHEBI:16977",
"CHEBI:22277",
"CHEBI:32439",
"CHEBI:57972",
"CHEBI:6171",
"CHEBI:16449",
"CHEBI:32431",
"CHEBI:32432",
"CHEBI:66916",
"CHEBI:40734",
"CHEBI:13069",
"CHEBI:76050",
"CHEBI:13748"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/d80739c7-acbe-4c00-8ea2-e3d19a191be2",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1aad160f-1c5e-48e0-9473-6305321b31ed"
],
"hmdb":[
"HMDB00161",
"HMDB62251"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-REOHCLBHSA-N"
],
"kegg.compound":[
"C01401",
"C00041"
],
"kegg.drug":[
"D00012"
],
"metanetx.chemical":[
"MNXM32"
],
"reactome.compound":[
"389664",
"352036",
"29432",
"379697"
],
"sabiork":[
"2280",
"67"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00035",
"cpd01003"
]
}
},
{
"id":"ade_p",
"name":"Adenine",
"compartment":"p",
"charge":0,
"formula":"C5H5N5",
"notes":{
"original_bigg_ids":[
"ade_p"
]
},
"annotation":{
"bigg.metabolite":[
"ade"
],
"biocyc":[
"META:ADENINE",
"META:ADENINE-RING"
],
"chebi":[
"CHEBI:16708",
"CHEBI:22236",
"CHEBI:40579",
"CHEBI:13733",
"CHEBI:2470"
],
"hmdb":[
"HMDB00034"
],
"inchi_key":[
"GFFGJBXGBJISGV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00147"
],
"kegg.drug":[
"D00034"
],
"metanetx.chemical":[
"MNXM168"
],
"reactome.compound":[
"83951"
],
"sabiork":[
"57"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00128",
"cpd22238"
]
}
},
{
"id":"ade_e",
"name":"Adenine",
"compartment":"e",
"charge":0,
"formula":"C5H5N5",
"notes":{
"original_bigg_ids":[
"ade_e"
]
},
"annotation":{
"bigg.metabolite":[
"ade"
],
"biocyc":[
"META:ADENINE",
"META:ADENINE-RING"
],
"chebi":[
"CHEBI:16708",
"CHEBI:22236",
"CHEBI:40579",
"CHEBI:13733",
"CHEBI:2470"
],
"hmdb":[
"HMDB00034"
],
"inchi_key":[
"GFFGJBXGBJISGV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00147"
],
"kegg.drug":[
"D00034"
],
"metanetx.chemical":[
"MNXM168"
],
"reactome.compound":[
"83951"
],
"sabiork":[
"57"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00128",
"cpd22238"
]
}
},
{
"id":"citr__L_c",
"name":"L-Citrulline",
"compartment":"c",
"charge":0,
"formula":"C6H13N3O3",
"notes":{
"original_bigg_ids":[
"citr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"citr__L"
],
"biocyc":[
"META:L-CITRULLINE"
],
"chebi":[
"CHEBI:41489",
"CHEBI:3730",
"CHEBI:18211",
"CHEBI:21257",
"CHEBI:16349",
"CHEBI:13092",
"CHEBI:6203",
"CHEBI:66922",
"CHEBI:14002",
"CHEBI:57743"
],
"hmdb":[
"HMDB00904"
],
"inchi_key":[
"RHGKLRLOHDJJDR-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00327"
],
"kegg.drug":[
"D07706"
],
"metanetx.chemical":[
"MNXM211"
],
"reactome.compound":[
"113567",
"29968"
],
"sabiork":[
"1329"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00274"
]
}
},
{
"id":"pyam5p_c",
"name":"Pyridoxamine 5'-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C8H12N2O5P",
"notes":{
"original_bigg_ids":[
"pyam5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"pyam5p"
],
"biocyc":[
"META:PYRIDOXAMINE-5P"
],
"chebi":[
"CHEBI:14980",
"CHEBI:18335",
"CHEBI:14979",
"CHEBI:45037",
"CHEBI:58451",
"CHEBI:26427",
"CHEBI:8670"
],
"hmdb":[
"HMDB01555"
],
"inchi_key":[
"ZMJGSOSNSPKHNH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00647"
],
"metanetx.chemical":[
"MNXM366"
],
"reactome.compound":[
"965146"
],
"sabiork":[
"1685"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00493"
]
}
},
{
"id":"argtrna_c",
"name":"L-Arginyl-tRNA(Arg)",
"compartment":"c",
"charge":2,
"formula":"C6H14N4OR",
"notes":{
"original_bigg_ids":[
"argtrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"argtrna"
],
"chebi":[
"CHEBI:18366",
"CHEBI:13079",
"CHEBI:13080",
"CHEBI:6189"
],
"kegg.compound":[
"C02163"
],
"metanetx.chemical":[
"MNXM89870"
],
"reactome.compound":[
"379720",
"379708"
],
"sabiork":[
"3858"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12036"
]
}
},
{
"id":"gdp_c",
"name":"GDP C10H12N5O11P2",
"compartment":"c",
"charge":-3,
"formula":"C10H12N5O11P2",
"notes":{
"original_bigg_ids":[
"gdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdp"
],
"biocyc":[
"META:GDP"
],
"chebi":[
"CHEBI:5212",
"CHEBI:17552",
"CHEBI:58189",
"CHEBI:13327",
"CHEBI:42738",
"CHEBI:14379",
"CHEBI:24448",
"CHEBI:65180"
],
"hmdb":[
"HMDB01201"
],
"inchi_key":[
"QGWNDRXFNXRZMB-UUOKFMHZSA-K"
],
"kegg.compound":[
"C00035"
],
"kegg.glycan":[
"G10620"
],
"metanetx.chemical":[
"MNXM30"
],
"reactome.compound":[
"113525",
"29420",
"205689",
"111349"
],
"sabiork":[
"1280"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00031"
]
}
},
{
"id":"pydx5p_c",
"name":"Pyridoxal 5'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H8NO6P",
"notes":{
"original_bigg_ids":[
"pydx5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"pydx5p"
],
"biocyc":[
"META:PYRIDOXAL_PHOSPHATE"
],
"chebi":[
"CHEBI:8668",
"CHEBI:597326",
"CHEBI:45145",
"CHEBI:18405",
"CHEBI:14977",
"CHEBI:26424",
"CHEBI:234571",
"CHEBI:358848"
],
"hmdb":[
"HMDB01491"
],
"inchi_key":[
"NGVDGCNFYWLIFO-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00018"
],
"metanetx.chemical":[
"MNXM161"
],
"reactome.compound":[
"29390"
],
"sabiork":[
"1271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00016"
]
}
},
{
"id":"idp_c",
"name":"IDP C10H11N4O11P2",
"compartment":"c",
"charge":-3,
"formula":"C10H11N4O11P2",
"notes":{
"original_bigg_ids":[
"idp_c"
]
},
"annotation":{
"bigg.metabolite":[
"idp"
],
"biocyc":[
"META:IDP"
],
"chebi":[
"CHEBI:17808",
"CHEBI:58280",
"CHEBI:43252",
"CHEBI:19270",
"CHEBI:13371",
"CHEBI:5848"
],
"hmdb":[
"HMDB03335"
],
"inchi_key":[
"JPXZQMKKFWMMGK-KQYNXXCUSA-K"
],
"kegg.compound":[
"C00104"
],
"metanetx.chemical":[
"MNXM495"
],
"reactome.compound":[
"2509811"
],
"sabiork":[
"1299"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00090"
]
}
},
{
"id":"trnaarg_c",
"name":"TRNA(Arg)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaarg_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaarg"
],
"biocyc":[
"META:ARG-tRNAs"
],
"chebi":[
"CHEBI:10673",
"CHEBI:29171",
"CHEBI:15167"
],
"kegg.compound":[
"C01636"
],
"metanetx.chemical":[
"MNXM90751"
],
"reactome.compound":[
"379704",
"379727"
],
"sabiork":[
"3837"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11907",
"cpd22281"
]
}
},
{
"id":"trnaala_c",
"name":"TRNA(Ala)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaala_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaala"
],
"biocyc":[
"META:ALA-tRNAs"
],
"chebi":[
"CHEBI:29170",
"CHEBI:15166",
"CHEBI:10672"
],
"kegg.compound":[
"C01635"
],
"metanetx.chemical":[
"MNXM89576"
],
"reactome.compound":[
"379729",
"379731"
],
"sabiork":[
"3841"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd22249",
"cpd11906"
]
}
},
{
"id":"arg__L_e",
"name":"L-Arginine",
"compartment":"e",
"charge":1,
"formula":"C6H15N4O2",
"notes":{
"original_bigg_ids":[
"arg_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"arg__L"
],
"biocyc":[
"META:ARG"
],
"chebi":[
"CHEBI:32683",
"CHEBI:22616",
"CHEBI:2643",
"CHEBI:32681",
"CHEBI:13077",
"CHEBI:32682",
"CHEBI:16467",
"CHEBI:21235",
"CHEBI:42927",
"CHEBI:6185",
"CHEBI:32696",
"CHEBI:32695",
"CHEBI:29016",
"CHEBI:32697",
"CHEBI:133495"
],
"hmdb":[
"HMDB62762",
"HMDB00517"
],
"inchi_key":[
"ODKSFYDXXFIFQN-BYPYZUCNSA-O"
],
"kegg.compound":[
"C02385",
"C00062"
],
"kegg.drug":[
"D02982"
],
"metanetx.chemical":[
"MNXM70"
],
"reactome.compound":[
"351977",
"29468",
"374064",
"113530"
],
"sabiork":[
"2410",
"23080",
"80"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00051",
"cpd19021"
]
}
},
{
"id":"itp_c",
"name":"ITP C10H11N4O14P3",
"compartment":"c",
"charge":-4,
"formula":"C10H11N4O14P3",
"notes":{
"original_bigg_ids":[
"itp_c"
]
},
"annotation":{
"bigg.metabolite":[
"itp"
],
"biocyc":[
"META:ITP"
],
"chebi":[
"CHEBI:43508",
"CHEBI:16039",
"CHEBI:61402",
"CHEBI:19272",
"CHEBI:13374",
"CHEBI:57614",
"CHEBI:5851"
],
"hmdb":[
"HMDB00189"
],
"inchi_key":[
"HAEJPQIATWHALX-KQYNXXCUSA-J"
],
"kegg.compound":[
"C00081"
],
"metanetx.chemical":[
"MNXM423"
],
"reactome.compound":[
"2509836"
],
"sabiork":[
"1291"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00068"
]
}
},
{
"id":"alatrna_c",
"name":"L-Alanyl-tRNA(Ala)",
"compartment":"c",
"charge":1,
"formula":"C3H6NOR",
"notes":{
"original_bigg_ids":[
"alatrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"alatrna"
],
"chebi":[
"CHEBI:17732",
"CHEBI:13070",
"CHEBI:6172",
"CHEBI:13071"
],
"metanetx.chemical":[
"MNXM89815"
],
"reactome.compound":[
"379700",
"379730"
],
"sabiork":[
"3861"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16181"
]
}
},
{
"id":"ametam_c",
"name":"S-Adenosylmethioninamine",
"compartment":"c",
"charge":2,
"formula":"C14H24N6O3S",
"notes":{
"original_bigg_ids":[
"ametam_c"
]
},
"annotation":{
"bigg.metabolite":[
"ametam"
],
"biocyc":[
"META:S-ADENOSYLMETHIONINAMINE"
],
"chebi":[
"CHEBI:22035",
"CHEBI:8947",
"CHEBI:12743",
"CHEBI:15625",
"CHEBI:12762",
"CHEBI:10906",
"CHEBI:57443"
],
"hmdb":[
"HMDB00988"
],
"inchi_key":[
"ZUNBITIXDCPNSD-LSRJEVITSA-O"
],
"kegg.compound":[
"C01137"
],
"metanetx.chemical":[
"MNXM321"
],
"sabiork":[
"5404"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00837"
]
}
},
{
"id":"4pasp_c",
"name":"4-Phospho-L-aspartate",
"compartment":"c",
"charge":-2,
"formula":"C4H6NO7P",
"notes":{
"original_bigg_ids":[
"4pasp_c"
]
},
"annotation":{
"bigg.metabolite":[
"4pasp"
],
"biocyc":[
"META:L-BETA-ASPARTYL-P"
],
"chebi":[
"CHEBI:13062",
"CHEBI:12042",
"CHEBI:20471",
"CHEBI:21246",
"CHEBI:1925",
"CHEBI:20472",
"CHEBI:30407",
"CHEBI:15836",
"CHEBI:57535"
],
"hmdb":[
"HMDB12250"
],
"inchi_key":[
"IXZNKTPIYKDIGG-REOHCLBHSA-L"
],
"kegg.compound":[
"C03082"
],
"metanetx.chemical":[
"MNXM1177"
],
"sabiork":[
"1733"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01977"
]
}
},
{
"id":"ala__L_p",
"name":"L-Alanine",
"compartment":"p",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"ala__L"
],
"biocyc":[
"META:L-ALPHA-ALANINE"
],
"chebi":[
"CHEBI:21216",
"CHEBI:32440",
"CHEBI:2539",
"CHEBI:46308",
"CHEBI:40735",
"CHEBI:16977",
"CHEBI:22277",
"CHEBI:32439",
"CHEBI:57972",
"CHEBI:6171",
"CHEBI:16449",
"CHEBI:32431",
"CHEBI:32432",
"CHEBI:66916",
"CHEBI:40734",
"CHEBI:13069",
"CHEBI:76050",
"CHEBI:13748"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/d80739c7-acbe-4c00-8ea2-e3d19a191be2",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1aad160f-1c5e-48e0-9473-6305321b31ed"
],
"hmdb":[
"HMDB00161",
"HMDB62251"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-REOHCLBHSA-N"
],
"kegg.compound":[
"C01401",
"C00041"
],
"kegg.drug":[
"D00012"
],
"metanetx.chemical":[
"MNXM32"
],
"reactome.compound":[
"389664",
"352036",
"29432",
"379697"
],
"sabiork":[
"2280",
"67"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00035",
"cpd01003"
]
}
},
{
"id":"aspsa_c",
"name":"L-Aspartate 4-semialdehyde",
"compartment":"c",
"charge":0,
"formula":"C4H7NO3",
"notes":{
"original_bigg_ids":[
"aspsa_c"
]
},
"annotation":{
"bigg.metabolite":[
"aspsa"
],
"biocyc":[
"META:L-ASPARTATE-SEMIALDEHYDE"
],
"chebi":[
"CHEBI:40847",
"CHEBI:18051",
"CHEBI:13087",
"CHEBI:13086",
"CHEBI:21245",
"CHEBI:6194",
"CHEBI:537519"
],
"hmdb":[
"HMDB12249"
],
"inchi_key":[
"HOSWPDPVFBCLSY-VKHMYHEASA-N"
],
"kegg.compound":[
"C00441"
],
"metanetx.chemical":[
"MNXM361"
],
"sabiork":[
"2052"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00346"
]
}
},
{
"id":"amet_c",
"name":"S-Adenosyl-L-methionine",
"compartment":"c",
"charge":1,
"formula":"C15H23N6O5S",
"notes":{
"original_bigg_ids":[
"amet_c"
]
},
"annotation":{
"bigg.metabolite":[
"amet"
],
"biocyc":[
"META:S-ADENOSYLMETHIONINE"
],
"chebi":[
"CHEBI:33442",
"CHEBI:12757",
"CHEBI:10833",
"CHEBI:59789",
"CHEBI:67040",
"CHEBI:8946",
"CHEBI:12742",
"CHEBI:12760",
"CHEBI:10786",
"CHEBI:22036",
"CHEBI:527887",
"CHEBI:15414",
"CHEBI:45607"
],
"hmdb":[
"HMDB01185",
"HMDB62709"
],
"inchi_key":[
"MEFKEPWMEQBLKI-AIRLBKTGSA-O"
],
"kegg.compound":[
"C00019"
],
"metanetx.chemical":[
"MNXM16"
],
"reactome.compound":[
"2162265",
"5279190",
"77087",
"71284",
"353113"
],
"sabiork":[
"1272"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00017"
]
}
},
{
"id":"hom__L_c",
"name":"L-Homoserine",
"compartment":"c",
"charge":0,
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"hom_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"hom__L"
],
"biocyc":[
"META:HOMO-SER"
],
"chebi":[
"CHEBI:57476",
"CHEBI:6246",
"CHEBI:21330",
"CHEBI:43131",
"CHEBI:15699",
"CHEBI:13123"
],
"hmdb":[
"HMDB00719"
],
"inchi_key":[
"UKAUYVFTDYCKQA-VKHMYHEASA-N"
],
"kegg.compound":[
"C00263"
],
"metanetx.chemical":[
"MNXM353"
],
"sabiork":[
"2001"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00227"
]
}
},
{
"id":"ascb6p_c",
"name":"L-ascorbate-6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H7O9P",
"notes":{
"original_bigg_ids":[
"ascb6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"ascb6p"
],
"biocyc":[
"META:L-ASCORBATE-6-PHOSPHATE"
],
"chebi":[
"CHEBI:80368",
"CHEBI:61698",
"CHEBI:61701"
],
"inchi_key":[
"KIENGQUGHPTFGC-JLAZNSOCSA-K"
],
"kegg.compound":[
"C16186"
],
"metanetx.chemical":[
"MNXM2689"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14905"
]
}
},
{
"id":"hom__L_p",
"name":"L-Homoserine",
"compartment":"p",
"charge":0,
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"hom_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"hom__L"
],
"biocyc":[
"META:HOMO-SER"
],
"chebi":[
"CHEBI:57476",
"CHEBI:6246",
"CHEBI:21330",
"CHEBI:43131",
"CHEBI:15699",
"CHEBI:13123"
],
"hmdb":[
"HMDB00719"
],
"inchi_key":[
"UKAUYVFTDYCKQA-VKHMYHEASA-N"
],
"kegg.compound":[
"C00263"
],
"metanetx.chemical":[
"MNXM353"
],
"sabiork":[
"2001"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00227"
]
}
},
{
"id":"ascb__L_p",
"name":"L-Ascorbate",
"compartment":"p",
"charge":0,
"formula":"C6H8O6",
"notes":{
"original_bigg_ids":[
"ascb_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"ascb__L"
],
"biocyc":[
"META:ASCORBATE"
],
"chebi":[
"CHEBI:29073",
"CHEBI:38290",
"CHEBI:40892",
"CHEBI:17208",
"CHEBI:2868",
"CHEBI:21240",
"CHEBI:13861",
"CHEBI:43473",
"CHEBI:13082"
],
"hmdb":[
"HMDB29945",
"HMDB00044",
"HMDB14273"
],
"inchi_key":[
"CIWBSHSKHKDKBQ-JLAZNSOCSA-M"
],
"kegg.compound":[
"C20364",
"C00072"
],
"kegg.drug":[
"D00018"
],
"metanetx.chemical":[
"MNXM129"
],
"reactome.compound":[
"198816",
"351595",
"198836"
],
"sabiork":[
"1929"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00059"
]
}
},
{
"id":"ala__L_e",
"name":"L-Alanine",
"compartment":"e",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"ala__L"
],
"biocyc":[
"META:L-ALPHA-ALANINE"
],
"chebi":[
"CHEBI:21216",
"CHEBI:32440",
"CHEBI:2539",
"CHEBI:46308",
"CHEBI:40735",
"CHEBI:16977",
"CHEBI:22277",
"CHEBI:32439",
"CHEBI:57972",
"CHEBI:6171",
"CHEBI:16449",
"CHEBI:32431",
"CHEBI:32432",
"CHEBI:66916",
"CHEBI:40734",
"CHEBI:13069",
"CHEBI:76050",
"CHEBI:13748"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/d80739c7-acbe-4c00-8ea2-e3d19a191be2",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1aad160f-1c5e-48e0-9473-6305321b31ed"
],
"hmdb":[
"HMDB00161",
"HMDB62251"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-REOHCLBHSA-N"
],
"kegg.compound":[
"C01401",
"C00041"
],
"kegg.drug":[
"D00012"
],
"metanetx.chemical":[
"MNXM32"
],
"reactome.compound":[
"389664",
"352036",
"29432",
"379697"
],
"sabiork":[
"2280",
"67"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00035",
"cpd01003"
]
}
},
{
"id":"ascb__L_e",
"name":"L-Ascorbate",
"compartment":"e",
"charge":0,
"formula":"C6H8O6",
"notes":{
"original_bigg_ids":[
"ascb_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"ascb__L"
],
"biocyc":[
"META:ASCORBATE"
],
"chebi":[
"CHEBI:29073",
"CHEBI:38290",
"CHEBI:40892",
"CHEBI:17208",
"CHEBI:2868",
"CHEBI:21240",
"CHEBI:13861",
"CHEBI:43473",
"CHEBI:13082"
],
"hmdb":[
"HMDB29945",
"HMDB00044",
"HMDB14273"
],
"inchi_key":[
"CIWBSHSKHKDKBQ-JLAZNSOCSA-M"
],
"kegg.compound":[
"C20364",
"C00072"
],
"kegg.drug":[
"D00018"
],
"metanetx.chemical":[
"MNXM129"
],
"reactome.compound":[
"198816",
"351595",
"198836"
],
"sabiork":[
"1929"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00059"
]
}
},
{
"id":"cbi_c",
"name":"Cobinamide",
"compartment":"c",
"charge":0,
"formula":"C48H72CoN11O8",
"notes":{
"original_bigg_ids":[
"cbi_c"
]
},
"annotation":{
"bigg.metabolite":[
"cbi"
],
"biocyc":[
"META:COBINAMIDE"
],
"chebi":[
"CHEBI:48529"
],
"inchi_key":[
"XQRJFEVDQXEIAX-JFYQDRLCSA-M"
],
"metanetx.chemical":[
"MNXM1549"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ppal_c",
"name":"Propanal",
"compartment":"c",
"charge":0,
"formula":"C3H6O",
"notes":{
"original_bigg_ids":[
"ppal_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppal"
],
"biocyc":[
"META:CPD-665"
],
"chebi":[
"CHEBI:45052",
"CHEBI:26281",
"CHEBI:17153",
"CHEBI:41359",
"CHEBI:8468",
"CHEBI:14898"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/de9fac76-182f-497b-8590-df8d5d8e2580",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/deea3c6f-bf3e-49db-ad6d-a405caf96fdd"
],
"hmdb":[
"HMDB03366"
],
"inchi_key":[
"NBBJYMSMWIIQGU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00479"
],
"metanetx.chemical":[
"MNXM821"
],
"sabiork":[
"2056"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00371"
]
}
},
{
"id":"adocbi_c",
"name":"Adenosyl cobinamide",
"compartment":"c",
"charge":1,
"formula":"C58H84CoN16O11",
"notes":{
"original_bigg_ids":[
"adocbi_c"
]
},
"annotation":{
"bigg.metabolite":[
"adocbi"
],
"biocyc":[
"META:ADENOSYLCOBINAMIDE"
],
"hmdb":[
"HMDB06964",
"HMDB06903"
],
"inchi_key":[
"KQXSPGAEBZWHMC-OCUXTBADSA-N"
],
"kegg.compound":[
"C06508"
],
"metanetx.chemical":[
"MNXM90790"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03918"
]
}
},
{
"id":"asn__L_c",
"name":"L-Asparagine",
"compartment":"c",
"charge":0,
"formula":"C4H8N2O3",
"notes":{
"original_bigg_ids":[
"asn_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"asn__L"
],
"biocyc":[
"META:ASN"
],
"chebi":[
"CHEBI:6191",
"CHEBI:22653",
"CHEBI:32651",
"CHEBI:58048",
"CHEBI:40902",
"CHEBI:21242",
"CHEBI:32661",
"CHEBI:13083",
"CHEBI:17196",
"CHEBI:32660",
"CHEBI:32650"
],
"hmdb":[
"HMDB00168"
],
"inchi_key":[
"DCXYFEDJOCDNAF-REOHCLBHSA-N"
],
"kegg.compound":[
"C16438",
"C00152"
],
"metanetx.chemical":[
"MNXM147"
],
"reactome.compound":[
"29642",
"379703"
],
"sabiork":[
"21052",
"72"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00132",
"cpd15142"
]
}
},
{
"id":"pppi_c",
"name":"Inorganic triphosphate",
"compartment":"c",
"charge":-4,
"formula":"HO10P3",
"notes":{
"original_bigg_ids":[
"pppi_c"
]
},
"annotation":{
"bigg.metabolite":[
"pppi"
],
"biocyc":[
"META:P3I"
],
"chebi":[
"CHEBI:48315",
"CHEBI:39949",
"CHEBI:29203",
"CHEBI:9744",
"CHEBI:48316",
"CHEBI:39942",
"CHEBI:48314",
"CHEBI:18036",
"CHEBI:5926",
"CHEBI:48313"
],
"hmdb":[
"HMDB12282",
"HMDB03379"
],
"inchi_key":[
"UNXRWKVEANCORM-UHFFFAOYSA-I"
],
"kegg.compound":[
"C00536"
],
"metanetx.chemical":[
"MNXM332"
],
"sabiork":[
"1681",
"5073"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11672",
"cpd00421"
]
}
},
{
"id":"urdglyc_c",
"name":"(-)-Ureidoglycolate",
"compartment":"c",
"charge":-1,
"formula":"C3H5N2O4",
"notes":{
"original_bigg_ids":[
"urdglyc_c"
]
},
"annotation":{
"bigg.metabolite":[
"urdglyc"
],
"biocyc":[
"META:CPD-1091"
],
"chebi":[
"CHEBI:18499",
"CHEBI:15412",
"CHEBI:49050",
"CHEBI:57296",
"CHEBI:121",
"CHEBI:11076",
"CHEBI:27224",
"CHEBI:9891",
"CHEBI:10783",
"CHEBI:18804"
],
"hmdb":[
"HMDB01005"
],
"inchi_key":[
"NWZYYCVIOKVTII-SFOWXEAESA-M"
],
"kegg.compound":[
"C02766",
"C00603"
],
"metanetx.chemical":[
"MNXM490"
],
"sabiork":[
"2730",
"1875"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01786",
"cpd00465"
]
}
},
{
"id":"cbi_p",
"name":"Cobinamide",
"compartment":"p",
"charge":0,
"formula":"C48H72CoN11O8",
"notes":{
"original_bigg_ids":[
"cbi_p"
]
},
"annotation":{
"bigg.metabolite":[
"cbi"
],
"biocyc":[
"META:COBINAMIDE"
],
"chebi":[
"CHEBI:48529"
],
"inchi_key":[
"XQRJFEVDQXEIAX-JFYQDRLCSA-M"
],
"metanetx.chemical":[
"MNXM1549"
],
"sbo":"SBO:0000247"
}
},
{
"id":"asp__L_p",
"name":"L-Aspartate",
"compartment":"p",
"charge":-1,
"formula":"C4H6NO4",
"notes":{
"original_bigg_ids":[
"asp_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"asp__L"
],
"biocyc":[
"META:L-ASPARTATE"
],
"chebi":[
"CHEBI:17053",
"CHEBI:22659",
"CHEBI:6193",
"CHEBI:21247",
"CHEBI:29993",
"CHEBI:40942",
"CHEBI:29995",
"CHEBI:22660",
"CHEBI:29991",
"CHEBI:132943",
"CHEBI:35391",
"CHEBI:13085",
"CHEBI:40913",
"CHEBI:21244",
"CHEBI:40853",
"CHEBI:29992",
"CHEBI:40900"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4b0cdcb0-137a-4ddc-8e5c-2b55ea238c15"
],
"hmdb":[
"HMDB62186",
"HMDB62501",
"HMDB00191"
],
"inchi_key":[
"CKLJMWTZIZZHCS-REOHCLBHSA-M"
],
"kegg.compound":[
"C00049",
"C16433"
],
"kegg.drug":[
"D00013"
],
"metanetx.chemical":[
"MNXM42"
],
"reactome.compound":[
"113553",
"29448"
],
"sabiork":[
"71"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00041",
"cpd19181"
]
}
},
{
"id":"alltt_c",
"name":"Allantoate",
"compartment":"c",
"charge":-1,
"formula":"C4H7N4O4",
"notes":{
"original_bigg_ids":[
"alltt_c"
]
},
"annotation":{
"bigg.metabolite":[
"alltt"
],
"biocyc":[
"META:ALLANTOATE"
],
"chebi":[
"CHEBI:22353",
"CHEBI:2593",
"CHEBI:22352",
"CHEBI:13760",
"CHEBI:30837",
"CHEBI:17536"
],
"hmdb":[
"HMDB01209"
],
"inchi_key":[
"NUCLJNSWZCHRKL-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00499"
],
"metanetx.chemical":[
"MNXM584"
],
"sabiork":[
"1873"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00388"
]
}
},
{
"id":"nh4_p",
"name":"Ammonium",
"compartment":"p",
"charge":1,
"formula":"H4N",
"notes":{
"original_bigg_ids":[
"nh4_p"
]
},
"annotation":{
"bigg.metabolite":[
"nh4"
],
"biocyc":[
"META:AMMONIUM",
"META:AMMONIA"
],
"chebi":[
"CHEBI:44284",
"CHEBI:135980",
"CHEBI:22533",
"CHEBI:13406",
"CHEBI:29337",
"CHEBI:29340",
"CHEBI:13771",
"CHEBI:16134",
"CHEBI:28938",
"CHEBI:22534",
"CHEBI:13405",
"CHEBI:49783",
"CHEBI:7434",
"CHEBI:7435",
"CHEBI:44269",
"CHEBI:44404",
"CHEBI:13407"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/96667bd9-aeae-4e8f-89d3-100d0396af05",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/41e4c903-407f-49f7-bf6b-0a94d39fa3a7",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/27a89bdf-42f7-478f-91d8-e39881581096"
],
"hmdb":[
"HMDB00051",
"HMDB41827"
],
"inchi_key":[
"QGZKDVFQNNGYKY-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00014",
"C01342"
],
"kegg.drug":[
"D02916",
"D02915"
],
"metanetx.chemical":[
"MNXM15"
],
"reactome.compound":[
"5693978",
"1132163",
"29382",
"76230",
"140912",
"389843",
"2022135",
"31633",
"113561"
],
"sabiork":[
"1268",
"43"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19013",
"cpd00013"
]
}
},
{
"id":"cbi_e",
"name":"Cobinamide",
"compartment":"e",
"charge":0,
"formula":"C48H72CoN11O8",
"notes":{
"original_bigg_ids":[
"cbi_e"
]
},
"annotation":{
"bigg.metabolite":[
"cbi"
],
"biocyc":[
"META:COBINAMIDE"
],
"chebi":[
"CHEBI:48529"
],
"inchi_key":[
"XQRJFEVDQXEIAX-JFYQDRLCSA-M"
],
"metanetx.chemical":[
"MNXM1549"
],
"sbo":"SBO:0000247"
}
},
{
"id":"asn__L_p",
"name":"L-Asparagine",
"compartment":"p",
"charge":0,
"formula":"C4H8N2O3",
"notes":{
"original_bigg_ids":[
"asn_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"asn__L"
],
"biocyc":[
"META:ASN"
],
"chebi":[
"CHEBI:6191",
"CHEBI:22653",
"CHEBI:32651",
"CHEBI:58048",
"CHEBI:40902",
"CHEBI:21242",
"CHEBI:32661",
"CHEBI:13083",
"CHEBI:17196",
"CHEBI:32660",
"CHEBI:32650"
],
"hmdb":[
"HMDB00168"
],
"inchi_key":[
"DCXYFEDJOCDNAF-REOHCLBHSA-N"
],
"kegg.compound":[
"C16438",
"C00152"
],
"metanetx.chemical":[
"MNXM147"
],
"reactome.compound":[
"29642",
"379703"
],
"sabiork":[
"21052",
"72"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00132",
"cpd15142"
]
}
},
{
"id":"alltn_c",
"name":"Allantoin",
"compartment":"c",
"charge":0,
"formula":"C4H6N4O3",
"notes":{
"original_bigg_ids":[
"alltn_c"
]
},
"annotation":{
"bigg.metabolite":[
"alltn"
],
"biocyc":[
"META:ALLANTOIN"
],
"chebi":[
"CHEBI:15676",
"CHEBI:74345",
"CHEBI:2594",
"CHEBI:13761",
"CHEBI:22354"
],
"hmdb":[
"HMDB00462"
],
"inchi_key":[
"POJWUDADGALRAB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01551"
],
"kegg.drug":[
"D00121"
],
"metanetx.chemical":[
"MNXM612"
],
"sabiork":[
"5655"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01092"
]
}
},
{
"id":"cbl1_c",
"name":"Cob(I)alamin",
"compartment":"c",
"charge":-1,
"formula":"C62H88CoN13O14P",
"notes":{
"original_bigg_ids":[
"cbl1_c"
]
},
"annotation":{
"bigg.metabolite":[
"cbl1"
],
"biocyc":[
"META:COB-I-ALAMIN"
],
"chebi":[
"CHEBI:60488",
"CHEBI:14004",
"CHEBI:15982",
"CHEBI:23328",
"CHEBI:3784"
],
"hmdb":[
"HMDB03429",
"HMDB06470"
],
"inchi_key":[
"OMAOKVYASDIYQG-DSRCUDDDSA-L"
],
"kegg.compound":[
"C00853"
],
"metanetx.chemical":[
"MNXM91519"
],
"reactome.compound":[
"3159260"
],
"sabiork":[
"5278"
],
"sbo":"SBO:0000247"
}
},
{
"id":"alltn_p",
"name":"Allantoin",
"compartment":"p",
"charge":0,
"formula":"C4H6N4O3",
"notes":{
"original_bigg_ids":[
"alltn_p"
]
},
"annotation":{
"bigg.metabolite":[
"alltn"
],
"biocyc":[
"META:ALLANTOIN"
],
"chebi":[
"CHEBI:15676",
"CHEBI:74345",
"CHEBI:2594",
"CHEBI:13761",
"CHEBI:22354"
],
"hmdb":[
"HMDB00462"
],
"inchi_key":[
"POJWUDADGALRAB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01551"
],
"kegg.drug":[
"D00121"
],
"metanetx.chemical":[
"MNXM612"
],
"sabiork":[
"5655"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01092"
]
}
},
{
"id":"cbl1_p",
"name":"Cob(I)alamin",
"compartment":"p",
"charge":-1,
"formula":"C62H88CoN13O14P",
"notes":{
"original_bigg_ids":[
"cbl1_p"
]
},
"annotation":{
"bigg.metabolite":[
"cbl1"
],
"biocyc":[
"META:COB-I-ALAMIN"
],
"chebi":[
"CHEBI:60488",
"CHEBI:14004",
"CHEBI:15982",
"CHEBI:23328",
"CHEBI:3784"
],
"hmdb":[
"HMDB03429",
"HMDB06470"
],
"inchi_key":[
"OMAOKVYASDIYQG-DSRCUDDDSA-L"
],
"kegg.compound":[
"C00853"
],
"metanetx.chemical":[
"MNXM91519"
],
"reactome.compound":[
"3159260"
],
"sabiork":[
"5278"
],
"sbo":"SBO:0000247"
}
},
{
"id":"trnaasn_c",
"name":"TRNA Asn  C10H17O10PR2",
"compartment":"c",
"charge":0,
"formula":"C10H17O10PR2",
"notes":{
"original_bigg_ids":[
"trnaasn_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaasn"
],
"biocyc":[
"META:ASN-tRNAs"
],
"chebi":[
"CHEBI:15168",
"CHEBI:29172",
"CHEBI:10674"
],
"kegg.compound":[
"C01637"
],
"metanetx.chemical":[
"MNXM90665"
],
"reactome.compound":[
"379722",
"379699"
],
"sabiork":[
"3844"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11908",
"cpd22284"
]
}
},
{
"id":"alltn_e",
"name":"Allantoin",
"compartment":"e",
"charge":0,
"formula":"C4H6N4O3",
"notes":{
"original_bigg_ids":[
"alltn_e"
]
},
"annotation":{
"bigg.metabolite":[
"alltn"
],
"biocyc":[
"META:ALLANTOIN"
],
"chebi":[
"CHEBI:15676",
"CHEBI:74345",
"CHEBI:2594",
"CHEBI:13761",
"CHEBI:22354"
],
"hmdb":[
"HMDB00462"
],
"inchi_key":[
"POJWUDADGALRAB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01551"
],
"kegg.drug":[
"D00121"
],
"metanetx.chemical":[
"MNXM612"
],
"sabiork":[
"5655"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01092"
]
}
},
{
"id":"asntrna_c",
"name":"L-Asparaginyl-tRNA(Asn)",
"compartment":"c",
"charge":1,
"formula":"C14H23N2O12PR2",
"notes":{
"original_bigg_ids":[
"asntrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"asntrna"
],
"chebi":[
"CHEBI:13084",
"CHEBI:6192",
"CHEBI:29265",
"CHEBI:13251"
],
"kegg.compound":[
"C03402"
],
"metanetx.chemical":[
"MNXM89761"
],
"reactome.compound":[
"379718",
"379728"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16182",
"cpd12313"
]
}
},
{
"id":"cbl1_e",
"name":"Cob(I)alamin",
"compartment":"e",
"charge":-1,
"formula":"C62H88CoN13O14P",
"notes":{
"original_bigg_ids":[
"cbl1_e"
]
},
"annotation":{
"bigg.metabolite":[
"cbl1"
],
"biocyc":[
"META:COB-I-ALAMIN"
],
"chebi":[
"CHEBI:60488",
"CHEBI:14004",
"CHEBI:15982",
"CHEBI:23328",
"CHEBI:3784"
],
"hmdb":[
"HMDB03429",
"HMDB06470"
],
"inchi_key":[
"OMAOKVYASDIYQG-DSRCUDDDSA-L"
],
"kegg.compound":[
"C00853"
],
"metanetx.chemical":[
"MNXM91519"
],
"reactome.compound":[
"3159260"
],
"sabiork":[
"5278"
],
"sbo":"SBO:0000247"
}
},
{
"id":"all__D_e",
"name":"D-Allose",
"compartment":"e",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"all_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"all__D"
],
"biocyc":[
"META:D-Allopyranose",
"META:ALLOSE"
],
"chebi":[
"CHEBI:4093"
],
"inchi_key":[
"WQZGKKKJIJFFOK-IVMDWMLBSA-N"
],
"kegg.compound":[
"C01487"
],
"metanetx.chemical":[
"MNXM1919"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01055"
]
}
},
{
"id":"cd2_c",
"name":"Cadmium",
"compartment":"c",
"charge":2,
"formula":"Cd",
"notes":{
"original_bigg_ids":[
"cd2_c"
]
},
"annotation":{
"bigg.metabolite":[
"cd2"
],
"biocyc":[
"META:CD+2"
],
"chebi":[
"CHEBI:48773",
"CHEBI:3290",
"CHEBI:48775"
],
"hmdb":[
"HMDB03638"
],
"inchi_key":[
"WLZRMCYVCSSEQC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01413"
],
"metanetx.chemical":[
"MNXM4505"
],
"sabiork":[
"48"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01012"
]
}
},
{
"id":"asn__L_e",
"name":"L-Asparagine",
"compartment":"e",
"charge":0,
"formula":"C4H8N2O3",
"notes":{
"original_bigg_ids":[
"asn_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"asn__L"
],
"biocyc":[
"META:ASN"
],
"chebi":[
"CHEBI:6191",
"CHEBI:22653",
"CHEBI:32651",
"CHEBI:58048",
"CHEBI:40902",
"CHEBI:21242",
"CHEBI:32661",
"CHEBI:13083",
"CHEBI:17196",
"CHEBI:32660",
"CHEBI:32650"
],
"hmdb":[
"HMDB00168"
],
"inchi_key":[
"DCXYFEDJOCDNAF-REOHCLBHSA-N"
],
"kegg.compound":[
"C16438",
"C00152"
],
"metanetx.chemical":[
"MNXM147"
],
"reactome.compound":[
"29642",
"379703"
],
"sabiork":[
"21052",
"72"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00132",
"cpd15142"
]
}
},
{
"id":"aso3_e",
"name":"Arsenite",
"compartment":"e",
"charge":-3,
"formula":"AsO3",
"notes":{
"original_bigg_ids":[
"aso3_e"
]
},
"annotation":{
"bigg.metabolite":[
"aso3"
],
"biocyc":[
"META:CPD0-2040",
"META:CPD-763"
],
"chebi":[
"CHEBI:2846",
"CHEBI:22635",
"CHEBI:49899",
"CHEBI:13857",
"CHEBI:49900",
"CHEBI:29243",
"CHEBI:29866",
"CHEBI:29242"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/42d95b9b-3aca-45eb-a99d-ef775cb20524"
],
"hmdb":[
"HMDB11620"
],
"inchi_key":[
"AQLMHYSWFMLWBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06697"
],
"metanetx.chemical":[
"MNXM658"
],
"reactome.compound":[
"5696216"
],
"sabiork":[
"8854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26385",
"cpd04098"
]
}
},
{
"id":"cd2_p",
"name":"Cadmium",
"compartment":"p",
"charge":2,
"formula":"Cd",
"notes":{
"original_bigg_ids":[
"cd2_p"
]
},
"annotation":{
"bigg.metabolite":[
"cd2"
],
"biocyc":[
"META:CD+2"
],
"chebi":[
"CHEBI:48773",
"CHEBI:3290",
"CHEBI:48775"
],
"hmdb":[
"HMDB03638"
],
"inchi_key":[
"WLZRMCYVCSSEQC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01413"
],
"metanetx.chemical":[
"MNXM4505"
],
"sabiork":[
"48"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01012"
]
}
},
{
"id":"all__D_p",
"name":"D-Allose",
"compartment":"p",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"all_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"all__D"
],
"biocyc":[
"META:D-Allopyranose",
"META:ALLOSE"
],
"chebi":[
"CHEBI:4093"
],
"inchi_key":[
"WQZGKKKJIJFFOK-IVMDWMLBSA-N"
],
"kegg.compound":[
"C01487"
],
"metanetx.chemical":[
"MNXM1919"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01055"
]
}
},
{
"id":"cd2_e",
"name":"Cadmium",
"compartment":"e",
"charge":2,
"formula":"Cd",
"notes":{
"original_bigg_ids":[
"cd2_e"
]
},
"annotation":{
"bigg.metabolite":[
"cd2"
],
"biocyc":[
"META:CD+2"
],
"chebi":[
"CHEBI:48773",
"CHEBI:3290",
"CHEBI:48775"
],
"hmdb":[
"HMDB03638"
],
"inchi_key":[
"WLZRMCYVCSSEQC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01413"
],
"metanetx.chemical":[
"MNXM4505"
],
"sabiork":[
"48"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01012"
]
}
},
{
"id":"aso3_p",
"name":"Arsenite",
"compartment":"p",
"charge":-3,
"formula":"AsO3",
"notes":{
"original_bigg_ids":[
"aso3_p"
]
},
"annotation":{
"bigg.metabolite":[
"aso3"
],
"biocyc":[
"META:CPD0-2040",
"META:CPD-763"
],
"chebi":[
"CHEBI:2846",
"CHEBI:22635",
"CHEBI:49899",
"CHEBI:13857",
"CHEBI:49900",
"CHEBI:29243",
"CHEBI:29866",
"CHEBI:29242"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/42d95b9b-3aca-45eb-a99d-ef775cb20524"
],
"hmdb":[
"HMDB11620"
],
"inchi_key":[
"AQLMHYSWFMLWBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06697"
],
"metanetx.chemical":[
"MNXM658"
],
"reactome.compound":[
"5696216"
],
"sabiork":[
"8854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26385",
"cpd04098"
]
}
},
{
"id":"pe160_p",
"name":"Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":0,
"formula":"C37H74N1O8P1",
"notes":{
"original_bigg_ids":[
"pe160_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe160"
],
"biocyc":[
"META:CPD-12819"
],
"chebi":[
"CHEBI:73005",
"CHEBI:73127"
],
"hmdb":[
"HMDB05317",
"HMDB08923"
],
"inchi_key":[
"SLKDGVPOSSLUAI-PGUFJCEWSA-N"
],
"lipidmaps":[
"LMGP02010037"
],
"metanetx.chemical":[
"MNXM32178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15531",
"cpd29054",
"cpd23597"
],
"slm":[
"000034909"
]
}
},
{
"id":"ala_B_c",
"name":"Beta-Alanine",
"compartment":"c",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_B_c"
]
},
"annotation":{
"bigg.metabolite":[
"ala_B"
],
"biocyc":[
"META:B-ALANINE"
],
"chebi":[
"CHEBI:12389",
"CHEBI:63070",
"CHEBI:16958",
"CHEBI:22821",
"CHEBI:10343",
"CHEBI:57966",
"CHEBI:41050"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/0352ab69-1208-420e-b7c9-87b5b436f4df"
],
"hmdb":[
"HMDB00056"
],
"inchi_key":[
"UCMIRNVEIXFBKS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00099"
],
"kegg.drug":[
"D07561"
],
"metanetx.chemical":[
"MNXM144"
],
"reactome.compound":[
"73590",
"909777"
],
"sabiork":[
"1932"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00085"
]
}
},
{
"id":"cbp_c",
"name":"Carbamoyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"CH2NO5P",
"notes":{
"original_bigg_ids":[
"cbp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cbp"
],
"biocyc":[
"META:CARBAMOYL-P"
],
"chebi":[
"CHEBI:13942",
"CHEBI:23005",
"CHEBI:3389",
"CHEBI:58228",
"CHEBI:17672",
"CHEBI:41567"
],
"hmdb":[
"HMDB01096"
],
"inchi_key":[
"FFQKYPRQEYGKAF-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00169"
],
"metanetx.chemical":[
"MNXM138"
],
"reactome.compound":[
"29676",
"111647"
],
"sabiork":[
"1311"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00146"
]
}
},
{
"id":"cmp_c",
"name":"CMP C9H12N3O8P",
"compartment":"c",
"charge":-2,
"formula":"C9H12N3O8P",
"notes":{
"original_bigg_ids":[
"cmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cmp"
],
"biocyc":[
"META:CMP"
],
"chebi":[
"CHEBI:60377",
"CHEBI:41312",
"CHEBI:58120",
"CHEBI:3275",
"CHEBI:41691",
"CHEBI:41319",
"CHEBI:23520",
"CHEBI:17361",
"CHEBI:13274",
"CHEBI:47362",
"CHEBI:48799",
"CHEBI:41666"
],
"hmdb":[
"HMDB00095"
],
"inchi_key":[
"IERHLVCPSMICTF-XVFCMESISA-L"
],
"kegg.compound":[
"C00055"
],
"kegg.glycan":[
"G10621"
],
"metanetx.chemical":[
"MNXM31"
],
"reactome.compound":[
"1524067",
"727810",
"109395"
],
"sabiork":[
"1284"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00046"
]
}
},
{
"id":"cdpdddecg_c",
"name":"CDP-1,2-didodecanoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C36H63N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdddecg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdddecg"
],
"metanetx.chemical":[
"MNXM4507"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15417"
]
}
},
{
"id":"lpp_p",
"name":"Lipoprotein",
"compartment":"p",
"charge":0,
"formula":"C308H528O99N87S2",
"notes":{
"original_bigg_ids":[
"lpp_p"
]
},
"annotation":{
"bigg.metabolite":[
"lpp"
],
"chebi":[
"CHEBI:6495"
],
"kegg.compound":[
"C01834"
],
"metanetx.chemical":[
"MNXM7493"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11959"
]
}
},
{
"id":"cdpdtdecg_c",
"name":"CDP-1,2-ditetradecanoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C40H71N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdtdecg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdtdecg"
],
"biocyc":[
"META:CPD-18388"
],
"chebi":[
"CHEBI:103211"
],
"inchi_key":[
"ICFWXMWHAMIZGF-WNAWUNHNSA-L"
],
"metanetx.chemical":[
"MNXM4512"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15423"
]
}
},
{
"id":"cdpdtdec7eg_c",
"name":"CDP-1,2-ditetradec-7-enoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C40H67N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdtdec7eg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdtdec7eg"
],
"chebi":[
"CHEBI:103990"
],
"inchi_key":[
"VDJIEKQUDMPHPA-WNAWUNHNSA-L"
],
"metanetx.chemical":[
"MNXM4511"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15422"
]
}
},
{
"id":"cbasp_c",
"name":"N-Carbamoyl-L-aspartate",
"compartment":"c",
"charge":-2,
"formula":"C5H6N2O5",
"notes":{
"original_bigg_ids":[
"cbasp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cbasp"
],
"biocyc":[
"META:CARBAMYUL-L-ASPARTATE"
],
"chebi":[
"CHEBI:12593",
"CHEBI:21687",
"CHEBI:21688",
"CHEBI:44316",
"CHEBI:12496",
"CHEBI:7257",
"CHEBI:32814",
"CHEBI:15859"
],
"hmdb":[
"HMDB00828"
],
"inchi_key":[
"HLKXYZVTANABHZ-REOHCLBHSA-L"
],
"kegg.compound":[
"C00438"
],
"metanetx.chemical":[
"MNXM465"
],
"reactome.compound":[
"111628"
],
"sabiork":[
"2049"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00343"
]
}
},
{
"id":"pg160_p",
"name":"Phosphatidylglycerol (dihexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":-1,
"formula":"C38H74O10P1",
"notes":{
"original_bigg_ids":[
"pg160_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg160"
],
"biocyc":[
"META:CPD-8260"
],
"chebi":[
"CHEBI:73205",
"CHEBI:72829",
"CHEBI:75159"
],
"hmdb":[
"HMDB10570"
],
"inchi_key":[
"BIABMEZBCHDPBV-MPQUPPDSSA-M"
],
"lipidmaps":[
"LMGP04010986"
],
"metanetx.chemical":[
"MNXM32179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15538",
"cpd25117"
],
"slm":[
"000000812"
]
}
},
{
"id":"q8_c",
"name":"Ubiquinone-8",
"compartment":"c",
"charge":0,
"formula":"C49H74O4",
"notes":{
"original_bigg_ids":[
"q8_c"
]
},
"annotation":{
"bigg.metabolite":[
"q8"
],
"biocyc":[
"META:UBIQUINONE-8"
],
"chebi":[
"CHEBI:61683"
],
"inchi_key":[
"ICFIZJQGJAJRSU-SGHXUWJISA-N"
],
"kegg.compound":[
"C17569"
],
"lipidmaps":[
"LMPR02010005"
],
"metanetx.chemical":[
"MNXM232"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15560"
]
}
},
{
"id":"cdpdhdecg_c",
"name":"CDP-1,2-dihexadecanoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C44H79N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdhdecg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdhdecg"
],
"metanetx.chemical":[
"MNXM3232"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15419"
]
}
},
{
"id":"acetol_c",
"name":"Acetol cytosol",
"compartment":"c",
"charge":0,
"formula":"C3H6O2",
"notes":{
"original_bigg_ids":[
"acetol_c"
]
},
"annotation":{
"bigg.metabolite":[
"acetol"
],
"biocyc":[
"META:ACETOL"
],
"chebi":[
"CHEBI:27957",
"CHEBI:5796",
"CHEBI:24666"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/090b3a12-aba4-4202-9b9c-f30232d329f0"
],
"hmdb":[
"HMDB06961"
],
"inchi_key":[
"XLSMFKSTNGKWQX-UHFFFAOYSA-N"
],
"kegg.compound":[
"C05235"
],
"metanetx.chemical":[
"MNXM1744"
],
"sabiork":[
"2727"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03105"
]
}
},
{
"id":"cdpdhdec9eg_c",
"name":"CDP-1,2-dihexadec-9-enoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C44H75N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdhdec9eg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdhdec9eg"
],
"chebi":[
"CHEBI:104012"
],
"inchi_key":[
"LBKBJHVQQNUXGQ-BQUKFSKHSA-L"
],
"metanetx.chemical":[
"MNXM4508"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15418"
]
}
},
{
"id":"iasp_c",
"name":"Iminoaspartate",
"compartment":"c",
"charge":-2,
"formula":"C4H3NO4",
"notes":{
"original_bigg_ids":[
"iasp_c"
]
},
"annotation":{
"bigg.metabolite":[
"iasp"
],
"biocyc":[
"META:IMINOASPARTATE"
],
"chebi":[
"CHEBI:5878",
"CHEBI:77875",
"CHEBI:24784",
"CHEBI:50616",
"CHEBI:58831"
],
"hmdb":[
"HMDB01131"
],
"inchi_key":[
"NMUOATVLLQEYHI-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05840"
],
"lipidmaps":[
"LMFA01170110"
],
"metanetx.chemical":[
"MNXM599"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03470"
]
}
},
{
"id":"glc__D_c",
"name":"D-Glucose",
"compartment":"c",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"glc_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"glc__D"
],
"biocyc":[
"META:Glucopyranose"
],
"chebi":[
"CHEBI:12965",
"CHEBI:20999",
"CHEBI:4167",
"CHEBI:17634"
],
"hmdb":[
"HMDB00122",
"HMDB06564"
],
"inchi_key":[
"WQZGKKKJIJFFOK-GASJEMHNSA-N"
],
"kegg.compound":[
"C00031"
],
"kegg.drug":[
"D00009"
],
"metanetx.chemical":[
"MNXM41"
],
"sabiork":[
"1406",
"1407"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26821",
"cpd00027"
]
}
},
{
"id":"q8h2_c",
"name":"Ubiquinol-8",
"compartment":"c",
"charge":0,
"formula":"C49H76O4",
"notes":{
"original_bigg_ids":[
"q8h2_c"
]
},
"annotation":{
"bigg.metabolite":[
"q8h2"
],
"biocyc":[
"META:CPD-9956"
],
"chebi":[
"CHEBI:61682"
],
"hmdb":[
"HMDB01060"
],
"inchi_key":[
"LOJUQFSPYHMHEO-SGHXUWJISA-N"
],
"metanetx.chemical":[
"MNXM191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29608",
"cpd15561"
]
}
},
{
"id":"cdpdodecg_c",
"name":"CDP-1,2-dioctadecanoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C48H87N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdodecg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdodecg"
],
"biocyc":[
"META:CPD-12814"
],
"chebi":[
"CHEBI:104121"
],
"inchi_key":[
"PDCWLWQTNQCGRI-IGIWICMZSA-L"
],
"metanetx.chemical":[
"MNXM45856"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15421"
]
}
},
{
"id":"cdpdodec11eg_c",
"name":"CDP-1,2-dioctadec-11-enoylglycerol",
"compartment":"c",
"charge":-2,
"formula":"C48H83N3O15P2",
"notes":{
"original_bigg_ids":[
"cdpdodec11eg_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpdodec11eg"
],
"chebi":[
"CHEBI:104362"
],
"inchi_key":[
"KISJWPWNABZPGN-IGIWICMZSA-L"
],
"metanetx.chemical":[
"MNXM4509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15420"
]
}
},
{
"id":"malt_c",
"name":"Maltose C12H22O11",
"compartment":"c",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"malt_c"
]
},
"annotation":{
"bigg.metabolite":[
"malt"
],
"biocyc":[
"META:MALTOSE",
"META:ALPHA-MALTOSE"
],
"chebi":[
"CHEBI:6668",
"CHEBI:12340",
"CHEBI:43893",
"CHEBI:22463",
"CHEBI:10300",
"CHEBI:14568",
"CHEBI:18167",
"CHEBI:17306",
"CHEBI:25144"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/943ae27f-7875-4bcd-948d-1551ec9aa1ca"
],
"inchi_key":[
"GUBGYTABKSRVRQ-PICCSMPSSA-N"
],
"kegg.compound":[
"C00897",
"C00208"
],
"kegg.drug":[
"D00044"
],
"kegg.glycan":[
"G00275"
],
"metanetx.chemical":[
"MNXM165"
],
"reactome.compound":[
"188986",
"868706"
],
"sabiork":[
"5881",
"88",
"1669"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00665",
"cpd00179"
]
}
},
{
"id":"4c2me_c",
"name":"4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol",
"compartment":"c",
"charge":-2,
"formula":"C14H23N3O14P2",
"notes":{
"original_bigg_ids":[
"4c2me_c"
]
},
"annotation":{
"bigg.metabolite":[
"4c2me"
],
"biocyc":[
"META:4-CYTIDINE-5-DIPHOSPHO-2-C"
],
"chebi":[
"CHEBI:16578",
"CHEBI:1770",
"CHEBI:57823",
"CHEBI:11938"
],
"inchi_key":[
"YFAUKWZNPVBCFF-XHIBXCGHSA-L"
],
"kegg.compound":[
"C11435"
],
"metanetx.chemical":[
"MNXM1642"
],
"sabiork":[
"13502"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08287"
]
}
},
{
"id":"mqn8_c",
"name":"Menaquinone 8",
"compartment":"c",
"charge":0,
"formula":"C51H72O2",
"notes":{
"original_bigg_ids":[
"mqn8_c"
]
},
"annotation":{
"bigg.metabolite":[
"mqn8"
],
"biocyc":[
"META:CPD-9728"
],
"chebi":[
"CHEBI:44027"
],
"inchi_key":[
"LXKDFTDVRVLXFY-WQWYCSGDSA-N"
],
"metanetx.chemical":[
"MNXM509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15500"
]
}
},
{
"id":"succ_c",
"name":"Succinate",
"compartment":"c",
"charge":-2,
"formula":"C4H4O4",
"notes":{
"original_bigg_ids":[
"succ_c"
]
},
"annotation":{
"bigg.metabolite":[
"succ"
],
"biocyc":[
"META:SUC"
],
"chebi":[
"CHEBI:22941",
"CHEBI:26803",
"CHEBI:15741",
"CHEBI:132287",
"CHEBI:45639",
"CHEBI:30779",
"CHEBI:15125",
"CHEBI:22943",
"CHEBI:26807",
"CHEBI:9304",
"CHEBI:90372",
"CHEBI:30031"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/cc98aff0-7f64-4db4-9d59-de961c228496",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/6377658b-03f6-4fed-a5bf-ff0f2389b693",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/600b74d3-8fe5-426d-bedf-291175bd23e4",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8fdfd425-4343-4bf2-8427-b2ffa57fdbd7"
],
"hmdb":[
"HMDB00254"
],
"inchi_key":[
"KDYFGRWQOYBRFD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00042"
],
"lipidmaps":[
"LMFA01170043"
],
"metanetx.chemical":[
"MNXM25"
],
"reactome.compound":[
"389583",
"5278787",
"159939",
"433123",
"29434",
"113536"
],
"sabiork":[
"1924"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00036"
]
}
},
{
"id":"malttr_c",
"name":"Maltotriose C18H32O16",
"compartment":"c",
"charge":0,
"formula":"C18H32O16",
"notes":{
"original_bigg_ids":[
"malttr_c"
]
},
"annotation":{
"bigg.metabolite":[
"malttr"
],
"biocyc":[
"META:MALTOTRIOSE"
],
"chebi":[
"CHEBI:61993",
"CHEBI:6672",
"CHEBI:25146",
"CHEBI:43937",
"CHEBI:27931"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7d7cf31a-30a5-4368-8802-9269424379b6"
],
"hmdb":[
"HMDB01262"
],
"inchi_key":[
"FYGDTMLNYKFZSV-PXXRMHSHSA-N"
],
"kegg.compound":[
"C01835"
],
"metanetx.chemical":[
"MNXM468"
],
"reactome.compound":[
"191103"
],
"sabiork":[
"5832"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01262"
]
}
},
{
"id":"oaa_c",
"name":"Oxaloacetate",
"compartment":"c",
"charge":-2,
"formula":"C4H2O5",
"notes":{
"original_bigg_ids":[
"oaa_c"
]
},
"annotation":{
"bigg.metabolite":[
"oaa"
],
"biocyc":[
"META:OXALACETIC_ACID"
],
"chebi":[
"CHEBI:25731",
"CHEBI:24959",
"CHEBI:12820",
"CHEBI:16452",
"CHEBI:30744",
"CHEBI:14703",
"CHEBI:24958",
"CHEBI:7812",
"CHEBI:25734",
"CHEBI:29049"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/133a11f3-81b0-4384-837e-1ccdd0a2a645",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/40afaad4-431a-4e3c-b4c7-020dbe4bdd2a",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/be7c543c-40bd-4698-9821-22f2e65c38f3"
],
"hmdb":[
"HMDB00223"
],
"inchi_key":[
"KHPXUQMNIQBQEV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00036"
],
"lipidmaps":[
"LMFA01170120"
],
"metanetx.chemical":[
"MNXM46"
],
"reactome.compound":[
"6810070",
"113587",
"76213"
],
"sabiork":[
"1915"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00032"
]
}
},
{
"id":"2p4c2me_c",
"name":"2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol",
"compartment":"c",
"charge":-4,
"formula":"C14H22N3O17P3",
"notes":{
"original_bigg_ids":[
"2p4c2me_c"
]
},
"annotation":{
"bigg.metabolite":[
"2p4c2me"
],
"biocyc":[
"META:2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET"
],
"chebi":[
"CHEBI:57919",
"CHEBI:11650",
"CHEBI:11649",
"CHEBI:1266",
"CHEBI:16840"
],
"inchi_key":[
"HTJXTKBIUVFUAR-XHIBXCGHSA-J"
],
"kegg.compound":[
"C11436"
],
"metanetx.chemical":[
"MNXM1641"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08288"
]
}
},
{
"id":"maltttr_c",
"name":"Maltotetraose",
"compartment":"c",
"charge":0,
"formula":"C24H42O21",
"notes":{
"original_bigg_ids":[
"maltttr_c"
]
},
"annotation":{
"bigg.metabolite":[
"maltttr"
],
"biocyc":[
"META:MALTOTETRAOSE",
"META:CPD0-2595",
"META:CPD-13205"
],
"chebi":[
"CHEBI:6671",
"CHEBI:61988",
"CHEBI:28460",
"CHEBI:62974",
"CHEBI:25145",
"CHEBI:44299"
],
"hmdb":[
"HMDB01296"
],
"inchi_key":[
"LUEWUZLMQUOBSB-ZLBHSGTGSA-N"
],
"kegg.compound":[
"C02013",
"C02052"
],
"kegg.glycan":[
"G00459"
],
"metanetx.chemical":[
"MNXM5663"
],
"sabiork":[
"5941",
"5966"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01376",
"cpd01399"
]
}
},
{
"id":"cpe160_c",
"name":"Cyclopropane phosphatidylethanolamine (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)",
"compartment":"c",
"charge":0,
"formula":"C39H74N1O8P1",
"notes":{
"original_bigg_ids":[
"cpe160_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpe160"
],
"biocyc":[
"META:CPD0-2216"
],
"inchi_key":[
"DTFRUHREBAYLCS-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM48208"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15433",
"cpd26447"
]
}
},
{
"id":"asptrna_c",
"name":"L-Aspartyl-tRNA(Asp)",
"compartment":"c",
"charge":0,
"formula":"C4H5NO3R",
"notes":{
"original_bigg_ids":[
"asptrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"asptrna"
],
"kegg.compound":[
"C02984"
],
"metanetx.chemical":[
"MNXM90839"
],
"sabiork":[
"3866"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12226"
]
}
},
{
"id":"maltpt_c",
"name":"Maltopentaose",
"compartment":"c",
"charge":0,
"formula":"C30H52O26",
"notes":{
"original_bigg_ids":[
"maltpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"maltpt"
],
"biocyc":[
"META:MALTOPENTAOSE"
],
"chebi":[
"CHEBI:61952",
"CHEBI:62006"
],
"hmdb":[
"HMDB12254"
],
"inchi_key":[
"FTNIPWXXIGNQQF-DWTFCAFKSA-N"
],
"kegg.glycan":[
"G00343"
],
"metanetx.chemical":[
"MNXM1538"
],
"sabiork":[
"18865"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15495"
]
}
},
{
"id":"trnaasp_c",
"name":"TRNA(Asp)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaasp_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaasp"
],
"biocyc":[
"META:ASP-tRNAs"
],
"chebi":[
"CHEBI:15169",
"CHEBI:10675",
"CHEBI:29186"
],
"kegg.compound":[
"C01638"
],
"metanetx.chemical":[
"MNXM90752"
],
"reactome.compound":[
"379715",
"379711"
],
"sabiork":[
"3846"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11909",
"cpd22286"
]
}
},
{
"id":"cpg160_c",
"name":"Cyclopropane phosphatidylglycerol (dihexadec-9,10-cyclo-anoyl, n-C16:0 cyclo)",
"compartment":"c",
"charge":-1,
"formula":"C40H74O10P1",
"notes":{
"original_bigg_ids":[
"cpg160_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpg160"
],
"biocyc":[
"META:CPD0-2202"
],
"inchi_key":[
"OBXHKDVMOWISFV-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM48210"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15435",
"cpd26444"
]
}
},
{
"id":"malthp_c",
"name":"Maltoheptaose",
"compartment":"c",
"charge":0,
"formula":"C42H72O36",
"notes":{
"original_bigg_ids":[
"malthp_c"
]
},
"annotation":{
"bigg.metabolite":[
"malthp"
],
"biocyc":[
"META:CPD0-1133"
],
"chebi":[
"CHEBI:62010"
],
"hmdb":[
"HMDB13000"
],
"inchi_key":[
"ZHZITDGOAFCURV-VVTKTIMZSA-N"
],
"kegg.glycan":[
"G00689"
],
"metanetx.chemical":[
"MNXM61025"
],
"sabiork":[
"23092"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15494"
]
}
},
{
"id":"cpe180_c",
"name":"Cyclopropane phosphatidylethanolamine (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)",
"compartment":"c",
"charge":0,
"formula":"C43H82N1O8P1",
"notes":{
"original_bigg_ids":[
"cpe180_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpe180"
],
"biocyc":[
"META:CPD0-2218"
],
"inchi_key":[
"HCFAHMIUAQMBSN-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM48209"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15434",
"cpd26449"
]
}
},
{
"id":"asp__L_e",
"name":"L-Aspartate",
"compartment":"e",
"charge":-1,
"formula":"C4H6NO4",
"notes":{
"original_bigg_ids":[
"asp_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"asp__L"
],
"biocyc":[
"META:L-ASPARTATE"
],
"chebi":[
"CHEBI:17053",
"CHEBI:22659",
"CHEBI:6193",
"CHEBI:21247",
"CHEBI:29993",
"CHEBI:40942",
"CHEBI:29995",
"CHEBI:22660",
"CHEBI:29991",
"CHEBI:132943",
"CHEBI:35391",
"CHEBI:13085",
"CHEBI:40913",
"CHEBI:21244",
"CHEBI:40853",
"CHEBI:29992",
"CHEBI:40900"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/4b0cdcb0-137a-4ddc-8e5c-2b55ea238c15"
],
"hmdb":[
"HMDB62186",
"HMDB62501",
"HMDB00191"
],
"inchi_key":[
"CKLJMWTZIZZHCS-REOHCLBHSA-M"
],
"kegg.compound":[
"C00049",
"C16433"
],
"kegg.drug":[
"D00013"
],
"metanetx.chemical":[
"MNXM42"
],
"reactome.compound":[
"113553",
"29448"
],
"sabiork":[
"71"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00041",
"cpd19181"
]
}
},
{
"id":"dann_c",
"name":"7,8-Diaminononanoate",
"compartment":"c",
"charge":1,
"formula":"C9H21N2O2",
"notes":{
"original_bigg_ids":[
"dann_c"
]
},
"annotation":{
"bigg.metabolite":[
"dann"
],
"biocyc":[
"META:DIAMINONONANOATE"
],
"chebi":[
"CHEBI:12242",
"CHEBI:17830",
"CHEBI:20765",
"CHEBI:2247",
"CHEBI:58500"
],
"inchi_key":[
"KCEGBPIYGIWCDH-UHFFFAOYSA-O"
],
"kegg.compound":[
"C01037"
],
"lipidmaps":[
"LMFA01100062"
],
"metanetx.chemical":[
"MNXM1140"
],
"sabiork":[
"5370"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00764"
]
}
},
{
"id":"sucarg_c",
"name":"N2-Succinyl-L-arginine",
"compartment":"c",
"charge":-1,
"formula":"C10H17N4O5",
"notes":{
"original_bigg_ids":[
"sucarg_c"
]
},
"annotation":{
"bigg.metabolite":[
"sucarg"
],
"biocyc":[
"META:CPD-421"
],
"chebi":[
"CHEBI:21819",
"CHEBI:12637",
"CHEBI:7372",
"CHEBI:17705",
"CHEBI:58241"
],
"inchi_key":[
"UMOXFSXIFQOWTD-LURJTMIESA-M"
],
"kegg.compound":[
"C03296"
],
"metanetx.chemical":[
"MNXM1756"
],
"sabiork":[
"24650"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02103"
]
}
},
{
"id":"cpg180_c",
"name":"Cyclopropane phosphatidylglycerol (dioctadec-11,12-cyclo-anoyl, n-C18:0 cyclo)",
"compartment":"c",
"charge":-1,
"formula":"C44H82O10P1",
"notes":{
"original_bigg_ids":[
"cpg180_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpg180"
],
"biocyc":[
"META:CPD0-2217"
],
"inchi_key":[
"ACOSNNHXZDLJJE-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM48211"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15436",
"cpd26448"
]
}
},
{
"id":"amob_c",
"name":"S-Adenosyl-4-methylthio-2-oxobutanoate",
"compartment":"c",
"charge":0,
"formula":"C15H19N5O6S",
"notes":{
"original_bigg_ids":[
"amob_c"
]
},
"annotation":{
"bigg.metabolite":[
"amob"
],
"biocyc":[
"META:S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE"
],
"chebi":[
"CHEBI:12758",
"CHEBI:16490",
"CHEBI:8944",
"CHEBI:22033"
],
"inchi_key":[
"UOKVQQMBGVMXPU-CJPDYEHRSA-N"
],
"kegg.compound":[
"C04425"
],
"metanetx.chemical":[
"MNXM3090"
],
"sabiork":[
"7304"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02701"
]
}
},
{
"id":"cgly_p",
"name":"Cys Gly C5H10N2O3S",
"compartment":"p",
"charge":0,
"formula":"C5H10N2O3S",
"notes":{
"original_bigg_ids":[
"cgly_p"
]
},
"annotation":{
"bigg.metabolite":[
"cgly"
],
"biocyc":[
"META:CYS-GLY"
],
"chebi":[
"CHEBI:61694",
"CHEBI:4047"
],
"hmdb":[
"HMDB28775",
"HMDB00078"
],
"inchi_key":[
"ZUKPVRWZDMRIEO-VKHMYHEASA-N"
],
"kegg.compound":[
"C01419"
],
"metanetx.chemical":[
"MNXM683"
],
"reactome.compound":[
"1247934",
"1247904"
],
"sabiork":[
"2282"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01017"
]
}
},
{
"id":"athr__L_c",
"name":"L-Allo-threonine",
"compartment":"c",
"charge":0,
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"athr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"athr__L"
],
"biocyc":[
"META:L-ALLO-THREONINE"
],
"chebi":[
"CHEBI:6174",
"CHEBI:58585",
"CHEBI:21221",
"CHEBI:38262",
"CHEBI:40698",
"CHEBI:28718"
],
"hmdb":[
"HMDB04041"
],
"inchi_key":[
"AYFVYJQAPQTCCC-HRFVKAFMSA-N"
],
"kegg.compound":[
"C05519"
],
"metanetx.chemical":[
"MNXM2125"
],
"sabiork":[
"21308",
"2793"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03282"
]
}
},
{
"id":"prbatp_c",
"name":"1-(5-Phosphoribosyl)-ATP",
"compartment":"c",
"charge":-6,
"formula":"C15H19N5O20P4",
"notes":{
"original_bigg_ids":[
"prbatp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prbatp"
],
"biocyc":[
"META:PHOSPHORIBOSYL-ATP"
],
"chebi":[
"CHEBI:73200",
"CHEBI:58424",
"CHEBI:11196",
"CHEBI:18263",
"CHEBI:73183",
"CHEBI:8167",
"CHEBI:18970",
"CHEBI:59460",
"CHEBI:11192"
],
"hmdb":[
"HMDB03665"
],
"inchi_key":[
"RKNHJBVBFHDXGR-KEOHHSTQSA-H"
],
"kegg.compound":[
"C02739"
],
"metanetx.chemical":[
"MNXM1351"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01775"
]
}
},
{
"id":"gbbtn_p",
"name":"Gamma-butyrobetaine",
"compartment":"p",
"charge":0,
"formula":"C7H15NO2",
"notes":{
"original_bigg_ids":[
"gbbtn_p"
]
},
"annotation":{
"bigg.metabolite":[
"gbbtn"
],
"biocyc":[
"META:GAMMA-BUTYROBETAINE"
],
"chebi":[
"CHEBI:1941",
"CHEBI:20484",
"CHEBI:12047",
"CHEBI:16244"
],
"hmdb":[
"HMDB01161",
"HMDB06831"
],
"inchi_key":[
"JHPNVNIEXXLNTR-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01181"
],
"metanetx.chemical":[
"MNXM626"
],
"reactome.compound":[
"31369"
],
"sabiork":[
"5425"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00870"
]
}
},
{
"id":"ala_B_p",
"name":"Beta-Alanine",
"compartment":"p",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_B_p"
]
},
"annotation":{
"bigg.metabolite":[
"ala_B"
],
"biocyc":[
"META:B-ALANINE"
],
"chebi":[
"CHEBI:12389",
"CHEBI:63070",
"CHEBI:16958",
"CHEBI:22821",
"CHEBI:10343",
"CHEBI:57966",
"CHEBI:41050"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/0352ab69-1208-420e-b7c9-87b5b436f4df"
],
"hmdb":[
"HMDB00056"
],
"inchi_key":[
"UCMIRNVEIXFBKS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00099"
],
"kegg.drug":[
"D07561"
],
"metanetx.chemical":[
"MNXM144"
],
"reactome.compound":[
"73590",
"909777"
],
"sabiork":[
"1932"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00085"
]
}
},
{
"id":"ala_B_e",
"name":"Beta-Alanine",
"compartment":"e",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_B_e"
]
},
"annotation":{
"bigg.metabolite":[
"ala_B"
],
"biocyc":[
"META:B-ALANINE"
],
"chebi":[
"CHEBI:12389",
"CHEBI:63070",
"CHEBI:16958",
"CHEBI:22821",
"CHEBI:10343",
"CHEBI:57966",
"CHEBI:41050"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/0352ab69-1208-420e-b7c9-87b5b436f4df"
],
"hmdb":[
"HMDB00056"
],
"inchi_key":[
"UCMIRNVEIXFBKS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00099"
],
"kegg.drug":[
"D07561"
],
"metanetx.chemical":[
"MNXM144"
],
"reactome.compound":[
"73590",
"909777"
],
"sabiork":[
"1932"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00085"
]
}
},
{
"id":"cgly_e",
"name":"Cys Gly C5H10N2O3S",
"compartment":"e",
"charge":0,
"formula":"C5H10N2O3S",
"notes":{
"original_bigg_ids":[
"cgly_e"
]
},
"annotation":{
"bigg.metabolite":[
"cgly"
],
"biocyc":[
"META:CYS-GLY"
],
"chebi":[
"CHEBI:61694",
"CHEBI:4047"
],
"hmdb":[
"HMDB28775",
"HMDB00078"
],
"inchi_key":[
"ZUKPVRWZDMRIEO-VKHMYHEASA-N"
],
"kegg.compound":[
"C01419"
],
"metanetx.chemical":[
"MNXM683"
],
"reactome.compound":[
"1247934",
"1247904"
],
"sabiork":[
"2282"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01017"
]
}
},
{
"id":"chol_p",
"name":"Choline C5H14NO",
"compartment":"p",
"charge":1,
"formula":"C5H14NO",
"notes":{
"original_bigg_ids":[
"chol_p"
]
},
"annotation":{
"bigg.metabolite":[
"chol"
],
"biocyc":[
"META:CHOLINE"
],
"chebi":[
"CHEBI:41524",
"CHEBI:23212",
"CHEBI:15354",
"CHEBI:13985",
"CHEBI:72322",
"CHEBI:3665"
],
"hmdb":[
"HMDB00097"
],
"inchi_key":[
"OEYIOHPDSNJKLS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00114"
],
"kegg.drug":[
"D10498",
"D07690"
],
"metanetx.chemical":[
"MNXM90"
],
"reactome.compound":[
"264618",
"264638",
"6798162"
],
"sabiork":[
"1935"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00098"
]
}
},
{
"id":"chol_c",
"name":"Choline C5H14NO",
"compartment":"c",
"charge":1,
"formula":"C5H14NO",
"notes":{
"original_bigg_ids":[
"chol_c"
]
},
"annotation":{
"bigg.metabolite":[
"chol"
],
"biocyc":[
"META:CHOLINE"
],
"chebi":[
"CHEBI:41524",
"CHEBI:23212",
"CHEBI:15354",
"CHEBI:13985",
"CHEBI:72322",
"CHEBI:3665"
],
"hmdb":[
"HMDB00097"
],
"inchi_key":[
"OEYIOHPDSNJKLS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00114"
],
"kegg.drug":[
"D10498",
"D07690"
],
"metanetx.chemical":[
"MNXM90"
],
"reactome.compound":[
"264618",
"264638",
"6798162"
],
"sabiork":[
"1935"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00098"
]
}
},
{
"id":"crn_e",
"name":"L-Carnitine",
"compartment":"e",
"charge":0,
"formula":"C7H15NO3",
"notes":{
"original_bigg_ids":[
"crn_e"
]
},
"annotation":{
"bigg.metabolite":[
"crn"
],
"biocyc":[
"META:CARNITINE"
],
"chebi":[
"CHEBI:29085",
"CHEBI:11817",
"CHEBI:6202",
"CHEBI:21256",
"CHEBI:16347",
"CHEBI:23038",
"CHEBI:13947",
"CHEBI:17126",
"CHEBI:39547",
"CHEBI:20047",
"CHEBI:3424",
"CHEBI:13091"
],
"hmdb":[
"HMDB62496",
"HMDB00062",
"HMDB01467"
],
"inchi_key":[
"PHIQHXFUZVPYII-ZCFIWIBFSA-N"
],
"kegg.compound":[
"C00487",
"C00318"
],
"kegg.drug":[
"D02176"
],
"metanetx.chemical":[
"MNXM173"
],
"reactome.compound":[
"201023",
"549207",
"164988",
"390294",
"30235"
],
"sabiork":[
"3872",
"1328"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19003",
"cpd00266"
]
}
},
{
"id":"chol_e",
"name":"Choline C5H14NO",
"compartment":"e",
"charge":1,
"formula":"C5H14NO",
"notes":{
"original_bigg_ids":[
"chol_e"
]
},
"annotation":{
"bigg.metabolite":[
"chol"
],
"biocyc":[
"META:CHOLINE"
],
"chebi":[
"CHEBI:41524",
"CHEBI:23212",
"CHEBI:15354",
"CHEBI:13985",
"CHEBI:72322",
"CHEBI:3665"
],
"hmdb":[
"HMDB00097"
],
"inchi_key":[
"OEYIOHPDSNJKLS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00114"
],
"kegg.drug":[
"D10498",
"D07690"
],
"metanetx.chemical":[
"MNXM90"
],
"reactome.compound":[
"264618",
"264638",
"6798162"
],
"sabiork":[
"1935"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00098"
]
}
},
{
"id":"btn_c",
"name":"Biotin",
"compartment":"c",
"charge":-1,
"formula":"C10H15N2O3S",
"notes":{
"original_bigg_ids":[
"btn_c"
]
},
"annotation":{
"bigg.metabolite":[
"btn"
],
"biocyc":[
"META:BIOTIN"
],
"chebi":[
"CHEBI:13905",
"CHEBI:57586",
"CHEBI:22884",
"CHEBI:3108",
"CHEBI:41236",
"CHEBI:15956",
"CHEBI:22882"
],
"hmdb":[
"HMDB00030"
],
"inchi_key":[
"YBJHBAHKTGYVGT-ZKWXMUAHSA-M"
],
"kegg.compound":[
"C00120"
],
"kegg.drug":[
"D00029"
],
"metanetx.chemical":[
"MNXM304"
],
"reactome.compound":[
"199238",
"29582",
"199207"
],
"sabiork":[
"1936"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00104"
]
}
},
{
"id":"csn_p",
"name":"Cytosine",
"compartment":"p",
"charge":0,
"formula":"C4H5N3O",
"notes":{
"original_bigg_ids":[
"csn_p"
]
},
"annotation":{
"bigg.metabolite":[
"csn"
],
"biocyc":[
"META:CYTOSINE"
],
"chebi":[
"CHEBI:23531",
"CHEBI:4072",
"CHEBI:14066",
"CHEBI:16040",
"CHEBI:41732"
],
"hmdb":[
"HMDB00630"
],
"inchi_key":[
"OPTASPLRGRRNAP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00380"
],
"metanetx.chemical":[
"MNXM761"
],
"sabiork":[
"58"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00307"
]
}
},
{
"id":"btnso_c",
"name":"D-biotin d-sulfoxide",
"compartment":"c",
"charge":-1,
"formula":"C10H15N2O4S",
"notes":{
"original_bigg_ids":[
"btnso_c"
]
},
"annotation":{
"bigg.metabolite":[
"btnso"
],
"biocyc":[
"META:CPD-722"
],
"chebi":[
"CHEBI:62046",
"CHEBI:62193"
],
"inchi_key":[
"KCSKCIQYNAOBNQ-YBSFLMRUSA-M"
],
"kegg.compound":[
"C20386"
],
"metanetx.chemical":[
"MNXM3932"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15414"
]
}
},
{
"id":"3psme_c",
"name":"5-O-(1-Carboxyvinyl)-3-phosphoshikimate",
"compartment":"c",
"charge":-4,
"formula":"C10H9O10P",
"notes":{
"original_bigg_ids":[
"3psme_c"
]
},
"annotation":{
"bigg.metabolite":[
"3psme"
],
"biocyc":[
"META:3-ENOLPYRUVYL-SHIKIMATE-5P"
],
"chebi":[
"CHEBI:20533",
"CHEBI:57701",
"CHEBI:2104",
"CHEBI:12094",
"CHEBI:12097",
"CHEBI:16257"
],
"inchi_key":[
"QUTYKIXIUDQOLK-PRJMDXOYSA-J"
],
"kegg.compound":[
"C01269"
],
"metanetx.chemical":[
"MNXM1365"
],
"reactome.compound":[
"964900"
],
"sabiork":[
"5488"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00932"
]
}
},
{
"id":"csn_e",
"name":"Cytosine",
"compartment":"e",
"charge":0,
"formula":"C4H5N3O",
"notes":{
"original_bigg_ids":[
"csn_e"
]
},
"annotation":{
"bigg.metabolite":[
"csn"
],
"biocyc":[
"META:CYTOSINE"
],
"chebi":[
"CHEBI:23531",
"CHEBI:4072",
"CHEBI:14066",
"CHEBI:16040",
"CHEBI:41732"
],
"hmdb":[
"HMDB00630"
],
"inchi_key":[
"OPTASPLRGRRNAP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00380"
],
"metanetx.chemical":[
"MNXM761"
],
"sabiork":[
"58"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00307"
]
}
},
{
"id":"4hbz_c",
"name":"4-Hydroxybenzoate",
"compartment":"c",
"charge":-1,
"formula":"C7H5O3",
"notes":{
"original_bigg_ids":[
"4hbz_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hbz"
],
"biocyc":[
"META:4-hydroxybenzoate"
],
"chebi":[
"CHEBI:20397",
"CHEBI:30763",
"CHEBI:1858",
"CHEBI:17879",
"CHEBI:44949",
"CHEBI:12003",
"CHEBI:20398"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/1811ddf5-ba98-40a5-949d-c660b8587741",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9e05c7cc-e1b3-46a4-93ce-785c0dc04bfa",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1cc87b2b-41db-4354-90b1-049369c47662"
],
"hmdb":[
"HMDB00500"
],
"inchi_key":[
"FJKROLUGYXJWQN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00156"
],
"metanetx.chemical":[
"MNXM164"
],
"reactome.compound":[
"2162213"
],
"sabiork":[
"1951"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00136"
]
}
},
{
"id":"dtbt_c",
"name":"Dethiobiotin",
"compartment":"c",
"charge":-1,
"formula":"C10H17N2O3",
"notes":{
"original_bigg_ids":[
"dtbt_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtbt"
],
"biocyc":[
"META:DETHIOBIOTIN"
],
"chebi":[
"CHEBI:42280",
"CHEBI:14132",
"CHEBI:36990",
"CHEBI:16691",
"CHEBI:42279",
"CHEBI:23649",
"CHEBI:4457",
"CHEBI:57861"
],
"hmdb":[
"HMDB03581"
],
"inchi_key":[
"AUTOLBMXDDTRRT-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01909"
],
"metanetx.chemical":[
"MNXM1020"
],
"sabiork":[
"5879"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01311"
]
}
},
{
"id":"ctbt_p",
"name":"Crotonobetaine",
"compartment":"p",
"charge":0,
"formula":"C7H13NO2",
"notes":{
"original_bigg_ids":[
"ctbt_p"
]
},
"annotation":{
"bigg.metabolite":[
"ctbt"
],
"biocyc":[
"META:CROTONO-BETAINE"
],
"chebi":[
"CHEBI:48867",
"CHEBI:17237",
"CHEBI:20299",
"CHEBI:1774",
"CHEBI:11946"
],
"inchi_key":[
"GUYHPGUANSLONG-SNAWJCMRSA-N"
],
"kegg.compound":[
"C04114"
],
"metanetx.chemical":[
"MNXM1607"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02543"
]
}
},
{
"id":"met__L_c",
"name":"L-Methionine",
"compartment":"c",
"charge":0,
"formula":"C5H11NO2S",
"notes":{
"original_bigg_ids":[
"met_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"met__L"
],
"biocyc":[
"META:MET"
],
"chebi":[
"CHEBI:32644",
"CHEBI:32631",
"CHEBI:21360",
"CHEBI:6271",
"CHEBI:14590",
"CHEBI:16811",
"CHEBI:25229",
"CHEBI:32632",
"CHEBI:6829",
"CHEBI:57844",
"CHEBI:32646",
"CHEBI:64558",
"CHEBI:16643",
"CHEBI:13141",
"CHEBI:43990"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/44a61812-39ff-48f9-bf09-8398e8723d5e"
],
"hmdb":[
"HMDB00696",
"HMDB33951"
],
"inchi_key":[
"FFEARJCKVFRZRR-BYPYZUCNSA-N"
],
"kegg.compound":[
"C01733",
"C00073"
],
"kegg.drug":[
"D04984",
"D04983",
"D00019"
],
"metanetx.chemical":[
"MNXM61"
],
"reactome.compound":[
"379705",
"1130765",
"174390"
],
"sabiork":[
"77",
"2315"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00060",
"cpd30746"
]
}
},
{
"id":"cit_p",
"name":"Citrate",
"compartment":"p",
"charge":-3,
"formula":"C6H5O7",
"notes":{
"original_bigg_ids":[
"cit_p"
]
},
"annotation":{
"bigg.metabolite":[
"cit"
],
"biocyc":[
"META:CIT"
],
"chebi":[
"CHEBI:35802",
"CHEBI:133748",
"CHEBI:35809",
"CHEBI:76049",
"CHEBI:41523",
"CHEBI:35810",
"CHEBI:30769",
"CHEBI:13999",
"CHEBI:23322",
"CHEBI:35808",
"CHEBI:42563",
"CHEBI:16947",
"CHEBI:132362",
"CHEBI:35804",
"CHEBI:23321",
"CHEBI:3727",
"CHEBI:35806"
],
"hmdb":[
"HMDB00094"
],
"inchi_key":[
"KRKNYBCHXYNGOX-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00158"
],
"kegg.drug":[
"D00037"
],
"metanetx.chemical":[
"MNXM131"
],
"reactome.compound":[
"29654",
"433138",
"76190"
],
"sabiork":[
"1952"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00137"
]
}
},
{
"id":"utp_c",
"name":"UTP C9H11N2O15P3",
"compartment":"c",
"charge":-4,
"formula":"C9H11N2O15P3",
"notes":{
"original_bigg_ids":[
"utp_c"
]
},
"annotation":{
"bigg.metabolite":[
"utp"
],
"biocyc":[
"META:UTP"
],
"chebi":[
"CHEBI:9850",
"CHEBI:46398",
"CHEBI:27233",
"CHEBI:57481",
"CHEBI:37567",
"CHEBI:13510",
"CHEBI:46397",
"CHEBI:15713"
],
"hmdb":[
"HMDB00285"
],
"inchi_key":[
"PGAVKCOVUIYSFO-XVFCMESISA-J"
],
"kegg.compound":[
"C00075"
],
"metanetx.chemical":[
"MNXM121"
],
"reactome.compound":[
"29494"
],
"sabiork":[
"1288"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00062"
]
}
},
{
"id":"succ_p",
"name":"Succinate",
"compartment":"p",
"charge":-2,
"formula":"C4H4O4",
"notes":{
"original_bigg_ids":[
"succ_p"
]
},
"annotation":{
"bigg.metabolite":[
"succ"
],
"biocyc":[
"META:SUC"
],
"chebi":[
"CHEBI:22941",
"CHEBI:26803",
"CHEBI:15741",
"CHEBI:132287",
"CHEBI:45639",
"CHEBI:30779",
"CHEBI:15125",
"CHEBI:22943",
"CHEBI:26807",
"CHEBI:9304",
"CHEBI:90372",
"CHEBI:30031"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/cc98aff0-7f64-4db4-9d59-de961c228496",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/6377658b-03f6-4fed-a5bf-ff0f2389b693",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/600b74d3-8fe5-426d-bedf-291175bd23e4",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8fdfd425-4343-4bf2-8427-b2ffa57fdbd7"
],
"hmdb":[
"HMDB00254"
],
"inchi_key":[
"KDYFGRWQOYBRFD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00042"
],
"lipidmaps":[
"LMFA01170043"
],
"metanetx.chemical":[
"MNXM25"
],
"reactome.compound":[
"389583",
"5278787",
"159939",
"433123",
"29434",
"113536"
],
"sabiork":[
"1924"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00036"
]
}
},
{
"id":"ctp_c",
"name":"CTP C9H12N3O14P3",
"compartment":"c",
"charge":-4,
"formula":"C9H12N3O14P3",
"notes":{
"original_bigg_ids":[
"ctp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ctp"
],
"biocyc":[
"META:CTP"
],
"chebi":[
"CHEBI:3285",
"CHEBI:23522",
"CHEBI:41675",
"CHEBI:58231",
"CHEBI:37563",
"CHEBI:13286",
"CHEBI:17677"
],
"hmdb":[
"HMDB00082"
],
"inchi_key":[
"PCDQPRRSZKQHHS-XVFCMESISA-J"
],
"kegg.compound":[
"C00063"
],
"metanetx.chemical":[
"MNXM63"
],
"reactome.compound":[
"29470",
"110614",
"110577"
],
"sabiork":[
"1286"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00052"
]
}
},
{
"id":"cit_e",
"name":"Citrate",
"compartment":"e",
"charge":-3,
"formula":"C6H5O7",
"notes":{
"original_bigg_ids":[
"cit_e"
]
},
"annotation":{
"bigg.metabolite":[
"cit"
],
"biocyc":[
"META:CIT"
],
"chebi":[
"CHEBI:35802",
"CHEBI:133748",
"CHEBI:35809",
"CHEBI:76049",
"CHEBI:41523",
"CHEBI:35810",
"CHEBI:30769",
"CHEBI:13999",
"CHEBI:23322",
"CHEBI:35808",
"CHEBI:42563",
"CHEBI:16947",
"CHEBI:132362",
"CHEBI:35804",
"CHEBI:23321",
"CHEBI:3727",
"CHEBI:35806"
],
"hmdb":[
"HMDB00094"
],
"inchi_key":[
"KRKNYBCHXYNGOX-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00158"
],
"kegg.drug":[
"D00037"
],
"metanetx.chemical":[
"MNXM131"
],
"reactome.compound":[
"29654",
"433138",
"76190"
],
"sabiork":[
"1952"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00137"
]
}
},
{
"id":"s_c",
"name":"Sulfur",
"compartment":"c",
"charge":0,
"formula":"S",
"notes":{
"original_bigg_ids":[
"s_c"
]
},
"annotation":{
"bigg.metabolite":[
"s"
],
"biocyc":[
"META:Elemental-Sulfur"
],
"chebi":[
"CHEBI:26833"
],
"inchi_key":[
"NINIDFKCEFEMDL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00087"
],
"kegg.drug":[
"D00024"
],
"metanetx.chemical":[
"MNXM89"
],
"sabiork":[
"5001"
],
"sbo":"SBO:0000247"
}
},
{
"id":"o2_p",
"name":"O2 O2",
"compartment":"p",
"charge":0,
"formula":"O2",
"notes":{
"original_bigg_ids":[
"o2_p"
]
},
"annotation":{
"bigg.metabolite":[
"o2"
],
"biocyc":[
"META:OXYGEN-MOLECULE"
],
"chebi":[
"CHEBI:7860",
"CHEBI:26689",
"CHEBI:29097",
"CHEBI:15379",
"CHEBI:13416",
"CHEBI:27140",
"CHEBI:29793",
"CHEBI:30491",
"CHEBI:44742",
"CHEBI:23833",
"CHEBI:25366",
"CHEBI:10745"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/d5d12248-82d3-4cf3-b7d0-2e3d096768b4"
],
"hmdb":[
"HMDB01377"
],
"inchi_key":[
"MYMOFIZGZYHOMD-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00007"
],
"kegg.drug":[
"D00003"
],
"metanetx.chemical":[
"MNXM4"
],
"reactome.compound":[
"113534",
"113535",
"113685",
"5668566",
"189461",
"113533",
"1131511",
"352327",
"351593",
"29368",
"1236709"
],
"sabiork":[
"1264"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00007"
]
}
},
{
"id":"butso3_p",
"name":"Butanesulfonate",
"compartment":"p",
"charge":-1,
"formula":"C4H9O3S",
"notes":{
"original_bigg_ids":[
"butso3_p"
]
},
"annotation":{
"bigg.metabolite":[
"butso3"
],
"metanetx.chemical":[
"MNXM7138"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11596"
]
}
},
{
"id":"butso3_e",
"name":"Butanesulfonate",
"compartment":"e",
"charge":-1,
"formula":"C4H9O3S",
"notes":{
"original_bigg_ids":[
"butso3_e"
]
},
"annotation":{
"bigg.metabolite":[
"butso3"
],
"metanetx.chemical":[
"MNXM7138"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11596"
]
}
},
{
"id":"cu2_p",
"name":"Copper",
"compartment":"p",
"charge":2,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu2_p"
]
},
"annotation":{
"bigg.metabolite":[
"cu2"
],
"biocyc":[
"META:CU+2"
],
"chebi":[
"CHEBI:29036",
"CHEBI:23380",
"CHEBI:49550",
"CHEBI:20882"
],
"hmdb":[
"HMDB00657"
],
"inchi_key":[
"JPVYNHNXODAKFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00070"
],
"metanetx.chemical":[
"MNXM632"
],
"reactome.compound":[
"437295",
"936901",
"209799"
],
"sabiork":[
"19"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00058"
]
}
},
{
"id":"but_e",
"name":"Butyrate (n-C4:0)",
"compartment":"e",
"charge":-1,
"formula":"C4H7O2",
"notes":{
"original_bigg_ids":[
"but_e"
]
},
"annotation":{
"bigg.metabolite":[
"but"
],
"metanetx.chemical":[
"MNXM162281"
],
"sbo":"SBO:0000247"
}
},
{
"id":"cu_p",
"name":"Cu+",
"compartment":"p",
"charge":1,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu_p"
]
},
"annotation":{
"bigg.metabolite":[
"cu"
],
"biocyc":[
"META:CU+"
],
"chebi":[
"CHEBI:49551",
"CHEBI:49552",
"CHEBI:23379"
],
"inchi_key":[
"VMQMZMRVKUZKQL-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM3568"
],
"sabiork":[
"20"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30760"
]
}
},
{
"id":"but_p",
"name":"Butyrate (n-C4:0)",
"compartment":"p",
"charge":-1,
"formula":"C4H7O2",
"notes":{
"original_bigg_ids":[
"but_p"
]
},
"annotation":{
"bigg.metabolite":[
"but"
],
"metanetx.chemical":[
"MNXM162281"
],
"sbo":"SBO:0000247"
}
},
{
"id":"cu_c",
"name":"Cu+",
"compartment":"c",
"charge":1,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu_c"
]
},
"annotation":{
"bigg.metabolite":[
"cu"
],
"biocyc":[
"META:CU+"
],
"chebi":[
"CHEBI:49551",
"CHEBI:49552",
"CHEBI:23379"
],
"inchi_key":[
"VMQMZMRVKUZKQL-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM3568"
],
"sabiork":[
"20"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30760"
]
}
},
{
"id":"ca2_p",
"name":"Calcium",
"compartment":"p",
"charge":2,
"formula":"Ca",
"notes":{
"original_bigg_ids":[
"ca2_p"
]
},
"annotation":{
"bigg.metabolite":[
"ca2"
],
"biocyc":[
"META:CA+2"
],
"chebi":[
"CHEBI:29108",
"CHEBI:48760",
"CHEBI:39123",
"CHEBI:22988",
"CHEBI:3308"
],
"hmdb":[
"HMDB00464"
],
"inchi_key":[
"BHPQYMZQTOCNFJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00076"
],
"metanetx.chemical":[
"MNXM128"
],
"reactome.compound":[
"111875",
"167012",
"139827",
"74016",
"74112",
"1606834",
"2855229"
],
"sabiork":[
"1289"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29674",
"cpd00063"
]
}
},
{
"id":"au_p",
"name":"Gold-Au",
"compartment":"p",
"charge":1,
"formula":"Au",
"notes":{
"original_bigg_ids":[
"au_p"
]
},
"annotation":{
"bigg.metabolite":[
"au"
],
"metanetx.chemical":[
"MNXM149057"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ca2_c",
"name":"Calcium",
"compartment":"c",
"charge":2,
"formula":"Ca",
"notes":{
"original_bigg_ids":[
"ca2_c"
]
},
"annotation":{
"bigg.metabolite":[
"ca2"
],
"biocyc":[
"META:CA+2"
],
"chebi":[
"CHEBI:29108",
"CHEBI:48760",
"CHEBI:39123",
"CHEBI:22988",
"CHEBI:3308"
],
"hmdb":[
"HMDB00464"
],
"inchi_key":[
"BHPQYMZQTOCNFJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00076"
],
"metanetx.chemical":[
"MNXM128"
],
"reactome.compound":[
"111875",
"167012",
"139827",
"74016",
"74112",
"1606834",
"2855229"
],
"sabiork":[
"1289"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29674",
"cpd00063"
]
}
},
{
"id":"au_c",
"name":"Gold-Au",
"compartment":"c",
"charge":1,
"formula":"Au",
"notes":{
"original_bigg_ids":[
"au_c"
]
},
"annotation":{
"bigg.metabolite":[
"au"
],
"metanetx.chemical":[
"MNXM149057"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ca2_e",
"name":"Calcium",
"compartment":"e",
"charge":2,
"formula":"Ca",
"notes":{
"original_bigg_ids":[
"ca2_e"
]
},
"annotation":{
"bigg.metabolite":[
"ca2"
],
"biocyc":[
"META:CA+2"
],
"chebi":[
"CHEBI:29108",
"CHEBI:48760",
"CHEBI:39123",
"CHEBI:22988",
"CHEBI:3308"
],
"hmdb":[
"HMDB00464"
],
"inchi_key":[
"BHPQYMZQTOCNFJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00076"
],
"metanetx.chemical":[
"MNXM128"
],
"reactome.compound":[
"111875",
"167012",
"139827",
"74016",
"74112",
"1606834",
"2855229"
],
"sabiork":[
"1289"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29674",
"cpd00063"
]
}
},
{
"id":"cu2_c",
"name":"Copper",
"compartment":"c",
"charge":2,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu2_c"
]
},
"annotation":{
"bigg.metabolite":[
"cu2"
],
"biocyc":[
"META:CU+2"
],
"chebi":[
"CHEBI:29036",
"CHEBI:23380",
"CHEBI:49550",
"CHEBI:20882"
],
"hmdb":[
"HMDB00657"
],
"inchi_key":[
"JPVYNHNXODAKFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00070"
],
"metanetx.chemical":[
"MNXM632"
],
"reactome.compound":[
"437295",
"936901",
"209799"
],
"sabiork":[
"19"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00058"
]
}
},
{
"id":"lys__L_c",
"name":"L-Lysine",
"compartment":"c",
"charge":1,
"formula":"C6H15N2O2",
"notes":{
"original_bigg_ids":[
"lys_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"lys__L"
],
"biocyc":[
"META:LYS"
],
"chebi":[
"CHEBI:6264",
"CHEBI:32564",
"CHEBI:13135",
"CHEBI:32550",
"CHEBI:21351",
"CHEBI:18019",
"CHEBI:32552",
"CHEBI:32551",
"CHEBI:133538",
"CHEBI:32565",
"CHEBI:43950",
"CHEBI:32563",
"CHEBI:25094"
],
"hmdb":[
"HMDB03405",
"HMDB00182",
"HMDB62809"
],
"inchi_key":[
"KDXKERNSBIXSRK-YFKPBYRVSA-O"
],
"kegg.compound":[
"C00047",
"C16440"
],
"kegg.drug":[
"D02304"
],
"metanetx.chemical":[
"MNXM78"
],
"reactome.compound":[
"29444",
"351979",
"351991"
],
"sabiork":[
"22945",
"79"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19182",
"cpd00039"
]
}
},
{
"id":"icit_e",
"name":"Isocitrate",
"compartment":"e",
"charge":-3,
"formula":"C6H5O7",
"notes":{
"original_bigg_ids":[
"icit_e"
]
},
"annotation":{
"bigg.metabolite":[
"icit"
],
"chebi":[
"CHEBI:16087",
"CHEBI:36454",
"CHEBI:5998",
"CHEBI:24886",
"CHEBI:36453",
"CHEBI:14465",
"CHEBI:30887",
"CHEBI:24884"
],
"hmdb":[
"HMDB00193"
],
"inchi_key":[
"ODBLHEXUDAPZAU-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00311"
],
"metanetx.chemical":[
"MNXM89661"
],
"sabiork":[
"2013"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00260"
]
}
},
{
"id":"cu2_e",
"name":"Copper",
"compartment":"e",
"charge":2,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu2_e"
]
},
"annotation":{
"bigg.metabolite":[
"cu2"
],
"biocyc":[
"META:CU+2"
],
"chebi":[
"CHEBI:29036",
"CHEBI:23380",
"CHEBI:49550",
"CHEBI:20882"
],
"hmdb":[
"HMDB00657"
],
"inchi_key":[
"JPVYNHNXODAKFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00070"
],
"metanetx.chemical":[
"MNXM632"
],
"reactome.compound":[
"437295",
"936901",
"209799"
],
"sabiork":[
"19"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00058"
]
}
},
{
"id":"icit_p",
"name":"Isocitrate",
"compartment":"p",
"charge":-3,
"formula":"C6H5O7",
"notes":{
"original_bigg_ids":[
"icit_p"
]
},
"annotation":{
"bigg.metabolite":[
"icit"
],
"chebi":[
"CHEBI:16087",
"CHEBI:36454",
"CHEBI:5998",
"CHEBI:24886",
"CHEBI:36453",
"CHEBI:14465",
"CHEBI:30887",
"CHEBI:24884"
],
"hmdb":[
"HMDB00193"
],
"inchi_key":[
"ODBLHEXUDAPZAU-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00311"
],
"metanetx.chemical":[
"MNXM89661"
],
"sabiork":[
"2013"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00260"
]
}
},
{
"id":"15dap_p",
"name":"1,5-Diaminopentane",
"compartment":"p",
"charge":2,
"formula":"C5H16N2",
"notes":{
"original_bigg_ids":[
"15dap_p"
]
},
"annotation":{
"bigg.metabolite":[
"15dap"
],
"biocyc":[
"META:CADAVERINE"
],
"chebi":[
"CHEBI:58384",
"CHEBI:22974",
"CHEBI:18127",
"CHEBI:13928",
"CHEBI:3288",
"CHEBI:44370"
],
"hmdb":[
"HMDB02322"
],
"inchi_key":[
"VHRGRCVQAFMJIZ-UHFFFAOYSA-P"
],
"kegg.compound":[
"C01672"
],
"metanetx.chemical":[
"MNXM943"
],
"sabiork":[
"3091"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01155"
]
}
},
{
"id":"cu_e",
"name":"Cu+",
"compartment":"e",
"charge":1,
"formula":"Cu",
"notes":{
"original_bigg_ids":[
"cu_e"
]
},
"annotation":{
"bigg.metabolite":[
"cu"
],
"biocyc":[
"META:CU+"
],
"chebi":[
"CHEBI:49551",
"CHEBI:49552",
"CHEBI:23379"
],
"inchi_key":[
"VMQMZMRVKUZKQL-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM3568"
],
"sabiork":[
"20"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30760"
]
}
},
{
"id":"acon_C_e",
"name":"Cis-Aconitate",
"compartment":"e",
"charge":-3,
"formula":"C6H3O6",
"notes":{
"original_bigg_ids":[
"acon_C_e"
]
},
"annotation":{
"bigg.metabolite":[
"acon_C"
],
"biocyc":[
"META:CIS-ACONITATE"
],
"chebi":[
"CHEBI:23306",
"CHEBI:16383",
"CHEBI:12798",
"CHEBI:32805",
"CHEBI:23308",
"CHEBI:10482"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/643481e5-a35b-477e-8665-70f4dca66baa"
],
"hmdb":[
"HMDB00461",
"HMDB00072"
],
"inchi_key":[
"GTZCVFVGUGFEME-IWQZZHSRSA-K"
],
"kegg.compound":[
"C00417"
],
"metanetx.chemical":[
"MNXM813"
],
"sabiork":[
"2043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00331"
]
}
},
{
"id":"so3_c",
"name":"Sulfite",
"compartment":"c",
"charge":-2,
"formula":"O3S",
"notes":{
"original_bigg_ids":[
"so3_c"
]
},
"annotation":{
"bigg.metabolite":[
"so3"
],
"biocyc":[
"META:H2SO3",
"META:HSO3",
"META:SO3"
],
"chebi":[
"CHEBI:15139",
"CHEBI:17137",
"CHEBI:45548",
"CHEBI:48854",
"CHEBI:26837",
"CHEBI:9344",
"CHEBI:5598",
"CHEBI:29214",
"CHEBI:13367",
"CHEBI:17359",
"CHEBI:33543"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/0382072e-fc0c-41a7-be8d-fce140ecf836",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2bf998e0-031f-4353-bbd0-d9c0af36460e"
],
"hmdb":[
"HMDB34829",
"HMDB03008",
"HMDB01033",
"HMDB00240"
],
"inchi_key":[
"LSNNMFCWUKXFEE-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00094",
"C11481"
],
"metanetx.chemical":[
"MNXM105630"
],
"sabiork":[
"3059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00081"
]
}
},
{
"id":"acon_C_p",
"name":"Cis-Aconitate",
"compartment":"p",
"charge":-3,
"formula":"C6H3O6",
"notes":{
"original_bigg_ids":[
"acon_C_p"
]
},
"annotation":{
"bigg.metabolite":[
"acon_C"
],
"biocyc":[
"META:CIS-ACONITATE"
],
"chebi":[
"CHEBI:23306",
"CHEBI:16383",
"CHEBI:12798",
"CHEBI:32805",
"CHEBI:23308",
"CHEBI:10482"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/643481e5-a35b-477e-8665-70f4dca66baa"
],
"hmdb":[
"HMDB00461",
"HMDB00072"
],
"inchi_key":[
"GTZCVFVGUGFEME-IWQZZHSRSA-K"
],
"kegg.compound":[
"C00417"
],
"metanetx.chemical":[
"MNXM813"
],
"sabiork":[
"2043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00331"
]
}
},
{
"id":"15dap_c",
"name":"1,5-Diaminopentane",
"compartment":"c",
"charge":2,
"formula":"C5H16N2",
"notes":{
"original_bigg_ids":[
"15dap_c"
]
},
"annotation":{
"bigg.metabolite":[
"15dap"
],
"biocyc":[
"META:CADAVERINE"
],
"chebi":[
"CHEBI:58384",
"CHEBI:22974",
"CHEBI:18127",
"CHEBI:13928",
"CHEBI:3288",
"CHEBI:44370"
],
"hmdb":[
"HMDB02322"
],
"inchi_key":[
"VHRGRCVQAFMJIZ-UHFFFAOYSA-P"
],
"kegg.compound":[
"C01672"
],
"metanetx.chemical":[
"MNXM943"
],
"sabiork":[
"3091"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01155"
]
}
},
{
"id":"tcynt_c",
"name":"Thiocyanate",
"compartment":"c",
"charge":-1,
"formula":"CNS",
"notes":{
"original_bigg_ids":[
"tcynt_c"
]
},
"annotation":{
"bigg.metabolite":[
"tcynt"
],
"biocyc":[
"META:HSCN"
],
"chebi":[
"CHEBI:29200",
"CHEBI:18022",
"CHEBI:45576",
"CHEBI:26956",
"CHEBI:24928",
"CHEBI:24926",
"CHEBI:9550",
"CHEBI:26954",
"CHEBI:15234"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e06445a5-0756-47c6-b6f7-64c74b192ecc"
],
"hmdb":[
"HMDB01453"
],
"inchi_key":[
"ZMZDMBWJUHKJPS-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01755"
],
"metanetx.chemical":[
"MNXM762"
],
"sabiork":[
"5778"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01211"
]
}
},
{
"id":"lys__L_p",
"name":"L-Lysine",
"compartment":"p",
"charge":1,
"formula":"C6H15N2O2",
"notes":{
"original_bigg_ids":[
"lys_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"lys__L"
],
"biocyc":[
"META:LYS"
],
"chebi":[
"CHEBI:6264",
"CHEBI:32564",
"CHEBI:13135",
"CHEBI:32550",
"CHEBI:21351",
"CHEBI:18019",
"CHEBI:32552",
"CHEBI:32551",
"CHEBI:133538",
"CHEBI:32565",
"CHEBI:43950",
"CHEBI:32563",
"CHEBI:25094"
],
"hmdb":[
"HMDB03405",
"HMDB00182",
"HMDB62809"
],
"inchi_key":[
"KDXKERNSBIXSRK-YFKPBYRVSA-O"
],
"kegg.compound":[
"C00047",
"C16440"
],
"kegg.drug":[
"D02304"
],
"metanetx.chemical":[
"MNXM78"
],
"reactome.compound":[
"29444",
"351979",
"351991"
],
"sabiork":[
"22945",
"79"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19182",
"cpd00039"
]
}
},
{
"id":"lipa_cold_p",
"name":"Cold adapted KDO(2)-lipid (A)",
"compartment":"p",
"charge":-6,
"formula":"C114H202N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_cold_p"
]
},
"annotation":{
"bigg.metabolite":[
"lipa_cold"
],
"biocyc":[
"META:KDO2-LIPID-IVA-COLD"
],
"chebi":[
"CHEBI:61556",
"CHEBI:61522"
],
"inchi_key":[
"YMYMIWUIGJUAIZ-LSPGFKFTSA-H"
],
"metanetx.chemical":[
"MNXM6016"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15493"
]
}
},
{
"id":"tsul_c",
"name":"Thiosulfate",
"compartment":"c",
"charge":-2,
"formula":"O3S2",
"notes":{
"original_bigg_ids":[
"tsul_c"
]
},
"annotation":{
"bigg.metabolite":[
"tsul"
],
"biocyc":[
"META:S2O3"
],
"chebi":[
"CHEBI:33540",
"CHEBI:33539",
"CHEBI:9569",
"CHEBI:26977",
"CHEBI:33541",
"CHEBI:15242",
"CHEBI:16094",
"CHEBI:29279",
"CHEBI:45922",
"CHEBI:5587",
"CHEBI:33542"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/32b1f2ad-32ba-4271-9c86-f4bb1c35e35d"
],
"hmdb":[
"HMDB00257",
"HMDB60293"
],
"inchi_key":[
"DHCDFWKWKRSZHF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05529",
"C00320"
],
"metanetx.chemical":[
"MNXM323"
],
"reactome.compound":[
"1614595"
],
"sabiork":[
"5043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00268"
]
}
},
{
"id":"lipa_cold_e",
"name":"Cold adapted KDO(2)-lipid (A)",
"compartment":"e",
"charge":-6,
"formula":"C114H202N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_cold_e"
]
},
"annotation":{
"bigg.metabolite":[
"lipa_cold"
],
"biocyc":[
"META:KDO2-LIPID-IVA-COLD"
],
"chebi":[
"CHEBI:61556",
"CHEBI:61522"
],
"inchi_key":[
"YMYMIWUIGJUAIZ-LSPGFKFTSA-H"
],
"metanetx.chemical":[
"MNXM6016"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15493"
]
}
},
{
"id":"cyan_c",
"name":"Hydrogen cyanide",
"compartment":"c",
"charge":0,
"formula":"CHN",
"notes":{
"original_bigg_ids":[
"cyan_c"
]
},
"annotation":{
"bigg.metabolite":[
"cyan"
],
"biocyc":[
"META:HCN",
"META:CPD-13584"
],
"chebi":[
"CHEBI:18407",
"CHEBI:36856",
"CHEBI:17514",
"CHEBI:5786",
"CHEBI:14038",
"CHEBI:13362",
"CHEBI:3969",
"CHEBI:41780"
],
"hmdb":[
"HMDB60292"
],
"inchi_key":[
"LELOWRISYMNNSU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00177",
"C01326"
],
"metanetx.chemical":[
"MNXM254"
],
"sabiork":[
"2269"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00150",
"cpd19012"
]
}
},
{
"id":"pa120_p",
"name":"1,2-didodecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C27H51O8P1",
"notes":{
"original_bigg_ids":[
"pa120_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa120"
],
"metanetx.chemical":[
"MNXM90509"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15521"
]
}
},
{
"id":"cyan_p",
"name":"Hydrogen cyanide",
"compartment":"p",
"charge":0,
"formula":"CHN",
"notes":{
"original_bigg_ids":[
"cyan_p"
]
},
"annotation":{
"bigg.metabolite":[
"cyan"
],
"biocyc":[
"META:HCN",
"META:CPD-13584"
],
"chebi":[
"CHEBI:18407",
"CHEBI:36856",
"CHEBI:17514",
"CHEBI:5786",
"CHEBI:14038",
"CHEBI:13362",
"CHEBI:3969",
"CHEBI:41780"
],
"hmdb":[
"HMDB60292"
],
"inchi_key":[
"LELOWRISYMNNSU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00177",
"C01326"
],
"metanetx.chemical":[
"MNXM254"
],
"sabiork":[
"2269"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00150",
"cpd19012"
]
}
},
{
"id":"pg120_p",
"name":"Phosphatidylglycerol (didodecanoyl, n-C12:0)",
"compartment":"p",
"charge":-1,
"formula":"C30H58O10P1",
"notes":{
"original_bigg_ids":[
"pg120_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg120"
],
"metanetx.chemical":[
"MNXM1771"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3mop_c",
"name":"(S)-3-Methyl-2-oxopentanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O3",
"notes":{
"original_bigg_ids":[
"3mop_c"
]
},
"annotation":{
"bigg.metabolite":[
"3mop"
],
"biocyc":[
"META:2-KETO-3-METHYL-VALERATE"
],
"chebi":[
"CHEBI:18568",
"CHEBI:401",
"CHEBI:213",
"CHEBI:18567",
"CHEBI:35146",
"CHEBI:18755",
"CHEBI:11049",
"CHEBI:10888",
"CHEBI:15614"
],
"inchi_key":[
"JVQYSWDUAOAHFM-BYPYZUCNSA-M"
],
"kegg.compound":[
"C00671"
],
"lipidmaps":[
"LMFA01020275"
],
"metanetx.chemical":[
"MNXM439"
],
"sabiork":[
"5174"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00508"
]
}
},
{
"id":"tsul_p",
"name":"Thiosulfate",
"compartment":"p",
"charge":-2,
"formula":"O3S2",
"notes":{
"original_bigg_ids":[
"tsul_p"
]
},
"annotation":{
"bigg.metabolite":[
"tsul"
],
"biocyc":[
"META:S2O3"
],
"chebi":[
"CHEBI:33540",
"CHEBI:33539",
"CHEBI:9569",
"CHEBI:26977",
"CHEBI:33541",
"CHEBI:15242",
"CHEBI:16094",
"CHEBI:29279",
"CHEBI:45922",
"CHEBI:5587",
"CHEBI:33542"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/32b1f2ad-32ba-4271-9c86-f4bb1c35e35d"
],
"hmdb":[
"HMDB00257",
"HMDB60293"
],
"inchi_key":[
"DHCDFWKWKRSZHF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05529",
"C00320"
],
"metanetx.chemical":[
"MNXM323"
],
"reactome.compound":[
"1614595"
],
"sabiork":[
"5043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00268"
]
}
},
{
"id":"dha_e",
"name":"Dihydroxyacetone",
"compartment":"e",
"charge":0,
"formula":"C3H6O3",
"notes":{
"original_bigg_ids":[
"dha_e"
]
},
"annotation":{
"bigg.metabolite":[
"dha"
],
"biocyc":[
"META:DIHYDROXYACETONE"
],
"chebi":[
"CHEBI:14340",
"CHEBI:24354",
"CHEBI:16016",
"CHEBI:39809",
"CHEBI:5453"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/88a6ccc5-fd05-4708-9244-5bc7a155dbbf"
],
"hmdb":[
"HMDB01882"
],
"inchi_key":[
"RXKJFZQQPQGTFL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00184"
],
"kegg.drug":[
"D07841"
],
"metanetx.chemical":[
"MNXM460"
],
"sabiork":[
"1963"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00157"
]
}
},
{
"id":"clpn120_p",
"name":"Cardiolipin (tetradodecanoyl, n-C12:0)",
"compartment":"p",
"charge":-2,
"formula":"C57H108O17P2",
"notes":{
"original_bigg_ids":[
"clpn120_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn120"
],
"metanetx.chemical":[
"MNXM5078"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tcynt_p",
"name":"Thiocyanate",
"compartment":"p",
"charge":-1,
"formula":"CNS",
"notes":{
"original_bigg_ids":[
"tcynt_p"
]
},
"annotation":{
"bigg.metabolite":[
"tcynt"
],
"biocyc":[
"META:HSCN"
],
"chebi":[
"CHEBI:29200",
"CHEBI:18022",
"CHEBI:45576",
"CHEBI:26956",
"CHEBI:24928",
"CHEBI:24926",
"CHEBI:9550",
"CHEBI:26954",
"CHEBI:15234"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e06445a5-0756-47c6-b6f7-64c74b192ecc"
],
"hmdb":[
"HMDB01453"
],
"inchi_key":[
"ZMZDMBWJUHKJPS-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01755"
],
"metanetx.chemical":[
"MNXM762"
],
"sabiork":[
"5778"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01211"
]
}
},
{
"id":"clpn140_p",
"name":"Cardiolipin (tetratetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":-2,
"formula":"C65H124O17P2",
"notes":{
"original_bigg_ids":[
"clpn140_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn140"
],
"biocyc":[
"META:CPD-19676"
],
"chebi":[
"CHEBI:62862"
],
"inchi_key":[
"SDCJNZZAOLRVCP-GTOSQJSUSA-L"
],
"metanetx.chemical":[
"MNXM83974"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dha_p",
"name":"Dihydroxyacetone",
"compartment":"p",
"charge":0,
"formula":"C3H6O3",
"notes":{
"original_bigg_ids":[
"dha_p"
]
},
"annotation":{
"bigg.metabolite":[
"dha"
],
"biocyc":[
"META:DIHYDROXYACETONE"
],
"chebi":[
"CHEBI:14340",
"CHEBI:24354",
"CHEBI:16016",
"CHEBI:39809",
"CHEBI:5453"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/88a6ccc5-fd05-4708-9244-5bc7a155dbbf"
],
"hmdb":[
"HMDB01882"
],
"inchi_key":[
"RXKJFZQQPQGTFL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00184"
],
"kegg.drug":[
"D07841"
],
"metanetx.chemical":[
"MNXM460"
],
"sabiork":[
"1963"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00157"
]
}
},
{
"id":"so3_p",
"name":"Sulfite",
"compartment":"p",
"charge":-2,
"formula":"O3S",
"notes":{
"original_bigg_ids":[
"so3_p"
]
},
"annotation":{
"bigg.metabolite":[
"so3"
],
"biocyc":[
"META:H2SO3",
"META:HSO3",
"META:SO3"
],
"chebi":[
"CHEBI:15139",
"CHEBI:17137",
"CHEBI:45548",
"CHEBI:48854",
"CHEBI:26837",
"CHEBI:9344",
"CHEBI:5598",
"CHEBI:29214",
"CHEBI:13367",
"CHEBI:17359",
"CHEBI:33543"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/0382072e-fc0c-41a7-be8d-fce140ecf836",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2bf998e0-031f-4353-bbd0-d9c0af36460e"
],
"hmdb":[
"HMDB34829",
"HMDB03008",
"HMDB01033",
"HMDB00240"
],
"inchi_key":[
"LSNNMFCWUKXFEE-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00094",
"C11481"
],
"metanetx.chemical":[
"MNXM105630"
],
"sabiork":[
"3059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00081"
]
}
},
{
"id":"dha_c",
"name":"Dihydroxyacetone",
"compartment":"c",
"charge":0,
"formula":"C3H6O3",
"notes":{
"original_bigg_ids":[
"dha_c"
]
},
"annotation":{
"bigg.metabolite":[
"dha"
],
"biocyc":[
"META:DIHYDROXYACETONE"
],
"chebi":[
"CHEBI:14340",
"CHEBI:24354",
"CHEBI:16016",
"CHEBI:39809",
"CHEBI:5453"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/88a6ccc5-fd05-4708-9244-5bc7a155dbbf"
],
"hmdb":[
"HMDB01882"
],
"inchi_key":[
"RXKJFZQQPQGTFL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00184"
],
"kegg.drug":[
"D07841"
],
"metanetx.chemical":[
"MNXM460"
],
"sabiork":[
"1963"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00157"
]
}
},
{
"id":"pg140_p",
"name":"Phosphatidylglycerol (ditetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":-1,
"formula":"C34H66O10P1",
"notes":{
"original_bigg_ids":[
"pg140_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg140"
],
"biocyc":[
"META:CPD-19677"
],
"chebi":[
"CHEBI:60723"
],
"inchi_key":[
"BPHQZTVXXXJVHI-AJQTZOPKSA-M"
],
"lipidmaps":[
"LMGP04010005"
],
"metanetx.chemical":[
"MNXM51019"
],
"sbo":"SBO:0000247",
"slm":[
"000041313"
]
}
},
{
"id":"cyan_e",
"name":"Hydrogen cyanide",
"compartment":"e",
"charge":0,
"formula":"CHN",
"notes":{
"original_bigg_ids":[
"cyan_e"
]
},
"annotation":{
"bigg.metabolite":[
"cyan"
],
"biocyc":[
"META:HCN",
"META:CPD-13584"
],
"chebi":[
"CHEBI:18407",
"CHEBI:36856",
"CHEBI:17514",
"CHEBI:5786",
"CHEBI:14038",
"CHEBI:13362",
"CHEBI:3969",
"CHEBI:41780"
],
"hmdb":[
"HMDB60292"
],
"inchi_key":[
"LELOWRISYMNNSU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00177",
"C01326"
],
"metanetx.chemical":[
"MNXM254"
],
"sabiork":[
"2269"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00150",
"cpd19012"
]
}
},
{
"id":"pa140_p",
"name":"1,2-ditetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C31H59O8P1",
"notes":{
"original_bigg_ids":[
"pa140_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa140"
],
"biocyc":[
"META:CPD0-1425"
],
"chebi":[
"CHEBI:84266",
"CHEBI:62085",
"CHEBI:83321",
"CHEBI:83550"
],
"inchi_key":[
"OZSITQMWYBNPMW-GDLZYMKVSA-L"
],
"lipidmaps":[
"LMGP10010026"
],
"metanetx.chemical":[
"MNXM51017"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26150",
"cpd15522"
],
"slm":[
"000025497"
]
}
},
{
"id":"23dhb_c",
"name":"2,3-Dihydroxybenzoate",
"compartment":"c",
"charge":-1,
"formula":"C7H5O4",
"notes":{
"original_bigg_ids":[
"23dhb_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhb"
],
"biocyc":[
"META:2-3-DIHYDROXYBENZOATE"
],
"chebi":[
"CHEBI:885",
"CHEBI:41901",
"CHEBI:18026",
"CHEBI:19319",
"CHEBI:19320",
"CHEBI:11427",
"CHEBI:36654"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/efc375bb-aac8-4002-93c2-2123606e76d8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f0dc57d7-63a2-4aea-8fcc-0c111e8cc0f1"
],
"hmdb":[
"HMDB00397"
],
"inchi_key":[
"GLDQAMYCGOIJDV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00196"
],
"metanetx.chemical":[
"MNXM455"
],
"sabiork":[
"1970"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00168"
]
}
},
{
"id":"cynt_e",
"name":"Cyanate",
"compartment":"e",
"charge":-1,
"formula":"CNO",
"notes":{
"original_bigg_ids":[
"cynt_e"
]
},
"annotation":{
"bigg.metabolite":[
"cynt"
],
"biocyc":[
"META:CPD-69"
],
"chebi":[
"CHEBI:29202",
"CHEBI:3968",
"CHEBI:14037",
"CHEBI:23419",
"CHEBI:29195",
"CHEBI:23422",
"CHEBI:28024"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/20a1ab57-2ac5-44c6-8390-60706fcc3fa1"
],
"hmdb":[
"HMDB02078"
],
"inchi_key":[
"XLJMAIOERFSOGZ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01417"
],
"metanetx.chemical":[
"MNXM1191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01015"
]
}
},
{
"id":"23ddhb_c",
"name":"2,3-Dihydro-2,3-dihydroxybenzoate",
"compartment":"c",
"charge":-1,
"formula":"C7H7O4",
"notes":{
"original_bigg_ids":[
"23ddhb_c"
]
},
"annotation":{
"bigg.metabolite":[
"23ddhb"
],
"biocyc":[
"META:DIHYDRO-DIOH-BENZOATE"
],
"chebi":[
"CHEBI:11420",
"CHEBI:19311",
"CHEBI:57576",
"CHEBI:58764",
"CHEBI:15941",
"CHEBI:48968",
"CHEBI:11423",
"CHEBI:877"
],
"inchi_key":[
"INCSWYKICIYAHB-WDSKDSINSA-M"
],
"kegg.compound":[
"C04171"
],
"metanetx.chemical":[
"MNXM114261"
],
"sabiork":[
"7130"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02566",
"cpd29666"
]
}
},
{
"id":"clpn141_p",
"name":"Cardiolipin (tetratetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":-2,
"formula":"C65H116O17P2",
"notes":{
"original_bigg_ids":[
"clpn141_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn141"
],
"metanetx.chemical":[
"MNXM7149"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg141_p",
"name":"Phosphatidylglycerol (ditetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":-1,
"formula":"C34H62O10P1",
"notes":{
"original_bigg_ids":[
"pg141_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg141"
],
"metanetx.chemical":[
"MNXM2029"
],
"sbo":"SBO:0000247"
}
},
{
"id":"23dhba_c",
"name":"(2,3-Dihydroxybenzoyl)adenylate",
"compartment":"c",
"charge":-1,
"formula":"C17H17N5O10P",
"notes":{
"original_bigg_ids":[
"23dhba_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhba"
],
"biocyc":[
"META:CPD-62"
],
"chebi":[
"CHEBI:57417",
"CHEBI:15572",
"CHEBI:18521",
"CHEBI:10846",
"CHEBI:170"
],
"inchi_key":[
"ULPVJDOMCRTJSN-RVXWVPLUSA-M"
],
"kegg.compound":[
"C04030"
],
"metanetx.chemical":[
"MNXM1978"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02494"
]
}
},
{
"id":"cynt_p",
"name":"Cyanate",
"compartment":"p",
"charge":-1,
"formula":"CNO",
"notes":{
"original_bigg_ids":[
"cynt_p"
]
},
"annotation":{
"bigg.metabolite":[
"cynt"
],
"biocyc":[
"META:CPD-69"
],
"chebi":[
"CHEBI:29202",
"CHEBI:3968",
"CHEBI:14037",
"CHEBI:23419",
"CHEBI:29195",
"CHEBI:23422",
"CHEBI:28024"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/20a1ab57-2ac5-44c6-8390-60706fcc3fa1"
],
"hmdb":[
"HMDB02078"
],
"inchi_key":[
"XLJMAIOERFSOGZ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01417"
],
"metanetx.chemical":[
"MNXM1191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01015"
]
}
},
{
"id":"23dhbzs_c",
"name":"2,3-dihydroxybenzoylserine",
"compartment":"c",
"charge":-1,
"formula":"C10H11NO6",
"notes":{
"original_bigg_ids":[
"23dhbzs_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhbzs"
],
"biocyc":[
"META:N-23-DIHYDROXYBENZOYL-L-SERINE"
],
"chebi":[
"CHEBI:17455",
"CHEBI:7084",
"CHEBI:21467",
"CHEBI:58154",
"CHEBI:12428"
],
"inchi_key":[
"VDTYHTVHFIIEIL-LURJTMIESA-M"
],
"kegg.compound":[
"C04204"
],
"metanetx.chemical":[
"MNXM1487"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15332",
"cpd02582"
]
}
},
{
"id":"ser__L_c",
"name":"L-Serine",
"compartment":"c",
"charge":0,
"formula":"C3H7NO3",
"notes":{
"original_bigg_ids":[
"ser_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"ser__L"
],
"biocyc":[
"META:SER",
"META:Serines"
],
"chebi":[
"CHEBI:32845",
"CHEBI:17822",
"CHEBI:26648",
"CHEBI:45440",
"CHEBI:21387",
"CHEBI:32837",
"CHEBI:13167",
"CHEBI:45451",
"CHEBI:32836",
"CHEBI:15081",
"CHEBI:45590",
"CHEBI:35243",
"CHEBI:32846",
"CHEBI:17115",
"CHEBI:45597",
"CHEBI:33384",
"CHEBI:45677",
"CHEBI:6301",
"CHEBI:9116"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/207ebcd7-f859-4b01-8a69-9b99fb380595"
],
"hmdb":[
"HMDB00589",
"HMDB00187",
"HMDB62263"
],
"inchi_key":[
"MTCFGRXMJLQNBG-REOHCLBHSA-N"
],
"kegg.compound":[
"C00716",
"C00065"
],
"kegg.drug":[
"D00016"
],
"lipidmaps":[
"LMFA01100045"
],
"metanetx.chemical":[
"MNXM53"
],
"reactome.compound":[
"352002",
"379732",
"8932979",
"200736"
],
"sabiork":[
"2140",
"75"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28171",
"cpd00054",
"cpd30743"
]
}
},
{
"id":"pa141_p",
"name":"1,2-ditetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C31H55O8P1",
"notes":{
"original_bigg_ids":[
"pa141_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa141"
],
"metanetx.chemical":[
"MNXM90512"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15523"
]
}
},
{
"id":"clpn160_p",
"name":"Cardiolipin (tetrahexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":-2,
"formula":"C73H140O17P2",
"notes":{
"original_bigg_ids":[
"clpn160_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn160"
],
"biocyc":[
"META:CPD-12824"
],
"chebi":[
"CHEBI:104586"
],
"hmdb":[
"HMDB56387"
],
"inchi_key":[
"GRTNLBQYBYZCCM-ULKDXPJMSA-L"
],
"lipidmaps":[
"LMGP12010007"
],
"metanetx.chemical":[
"MNXM45654"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15428",
"cpd23601"
]
}
},
{
"id":"h2s_c",
"name":"Hydrogen sulfide",
"compartment":"c",
"charge":0,
"formula":"H2S",
"notes":{
"original_bigg_ids":[
"h2s_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2s"
],
"biocyc":[
"META:CPD-846",
"META:CPD-7046",
"META:HS"
],
"chebi":[
"CHEBI:14414",
"CHEBI:43058",
"CHEBI:5787",
"CHEBI:13356",
"CHEBI:30488",
"CHEBI:24639",
"CHEBI:29919",
"CHEBI:16136",
"CHEBI:15138",
"CHEBI:45489"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6fca0a43-b0f0-41dd-a454-c7880342d6be",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/83aab241-d065-45ef-a799-98fdad5bcf04",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/0b237b94-a6df-4792-8866-246b2230eef0",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6715c2d9-35cb-48df-aa0b-611368e2fb0a"
],
"hmdb":[
"HMDB00598",
"HMDB03276"
],
"inchi_key":[
"RWSOTUBLDIXVET-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00283"
],
"metanetx.chemical":[
"MNXM89582"
],
"reactome.compound":[
"1663154",
"1614532",
"1655881"
],
"sabiork":[
"2007"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd24697",
"cpd00239"
]
}
},
{
"id":"pa160_p",
"name":"1,2-dihexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C35H67O8P1",
"notes":{
"original_bigg_ids":[
"pa160_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa160"
],
"biocyc":[
"META:CPD0-1422"
],
"chebi":[
"CHEBI:72859",
"CHEBI:73246"
],
"hmdb":[
"HMDB00674",
"HMDB07857"
],
"inchi_key":[
"PORPENFLTBBHSG-MGBGTMOVSA-L"
],
"lipidmaps":[
"LMGP10010027"
],
"metanetx.chemical":[
"MNXM17312"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26147",
"cpd15524"
],
"slm":[
"000000808"
]
}
},
{
"id":"23dhdp_c",
"name":"2,3-Dihydrodipicolinate",
"compartment":"c",
"charge":-2,
"formula":"C7H5NO4",
"notes":{
"original_bigg_ids":[
"23dhdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhdp"
],
"biocyc":[
"META:2-3-DIHYDRODIPICOLINATE"
],
"chebi":[
"CHEBI:18042",
"CHEBI:23739",
"CHEBI:878",
"CHEBI:48052",
"CHEBI:30620",
"CHEBI:19312",
"CHEBI:29048",
"CHEBI:11421"
],
"hmdb":[
"HMDB12247"
],
"inchi_key":[
"UWOCFOFVIBZJGH-YFKPBYRVSA-L"
],
"kegg.compound":[
"C03340"
],
"metanetx.chemical":[
"MNXM807"
],
"sabiork":[
"6562"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02120"
]
}
},
{
"id":"clpn161_p",
"name":"Cardiolipin (tetrahexadec-9-enoyl, n-C16:1)",
"compartment":"p",
"charge":-2,
"formula":"C73H132O17P2",
"notes":{
"original_bigg_ids":[
"clpn161_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn161"
],
"biocyc":[
"META:CPD-19674"
],
"chebi":[
"CHEBI:104873"
],
"inchi_key":[
"UYSHBKYVDAZLKJ-GMUISZSCSA-L"
],
"metanetx.chemical":[
"MNXM4501"
],
"sbo":"SBO:0000247"
}
},
{
"id":"cys__D_p",
"name":"D-Cysteine",
"compartment":"p",
"charge":0,
"formula":"C3H7NO2S",
"notes":{
"original_bigg_ids":[
"cys_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"cys__D"
],
"biocyc":[
"META:D-CYSTEINE"
],
"chebi":[
"CHEBI:41887",
"CHEBI:12919",
"CHEBI:32450",
"CHEBI:16375",
"CHEBI:20921",
"CHEBI:32451",
"CHEBI:32449",
"CHEBI:4111",
"CHEBI:35236"
],
"hmdb":[
"HMDB03417"
],
"inchi_key":[
"XUJNEKJLAYXESH-UWTATZPHSA-N"
],
"kegg.compound":[
"C00793"
],
"metanetx.chemical":[
"MNXM2112"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00587"
]
}
},
{
"id":"pa161_p",
"name":"1,2-dihexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C35H63O8P1",
"notes":{
"original_bigg_ids":[
"pa161_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa161"
],
"metanetx.chemical":[
"MNXM90510"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15525"
]
}
},
{
"id":"thdp_c",
"name":"2,3,4,5-Tetrahydrodipicolinate",
"compartment":"c",
"charge":-2,
"formula":"C7H7NO4",
"notes":{
"original_bigg_ids":[
"thdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"thdp"
],
"biocyc":[
"META:DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE"
],
"chebi":[
"CHEBI:11408",
"CHEBI:864",
"CHEBI:21189",
"CHEBI:6152",
"CHEBI:16845",
"CHEBI:18055",
"CHEBI:32976",
"CHEBI:13042"
],
"hmdb":[
"HMDB12289"
],
"inchi_key":[
"CXMBCXQHOXUCEO-BYPYZUCNSA-L"
],
"kegg.compound":[
"C03972"
],
"metanetx.chemical":[
"MNXM480"
],
"sabiork":[
"6990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29199",
"cpd02465"
]
}
},
{
"id":"cys__D_e",
"name":"D-Cysteine",
"compartment":"e",
"charge":0,
"formula":"C3H7NO2S",
"notes":{
"original_bigg_ids":[
"cys_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"cys__D"
],
"biocyc":[
"META:D-CYSTEINE"
],
"chebi":[
"CHEBI:41887",
"CHEBI:12919",
"CHEBI:32450",
"CHEBI:16375",
"CHEBI:20921",
"CHEBI:32451",
"CHEBI:32449",
"CHEBI:4111",
"CHEBI:35236"
],
"hmdb":[
"HMDB03417"
],
"inchi_key":[
"XUJNEKJLAYXESH-UWTATZPHSA-N"
],
"kegg.compound":[
"C00793"
],
"metanetx.chemical":[
"MNXM2112"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00587"
]
}
},
{
"id":"dhf_c",
"name":"7,8-Dihydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C19H19N7O6",
"notes":{
"original_bigg_ids":[
"dhf_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhf"
],
"biocyc":[
"META:DIHYDROFOLATE"
],
"chebi":[
"CHEBI:42000",
"CHEBI:15633",
"CHEBI:12245",
"CHEBI:20768",
"CHEBI:57451",
"CHEBI:14150",
"CHEBI:4564"
],
"hmdb":[
"HMDB01056"
],
"inchi_key":[
"OZRNSSUDZOLUSN-LBPRGKRZSA-L"
],
"kegg.compound":[
"C00415"
],
"metanetx.chemical":[
"MNXM281"
],
"reactome.compound":[
"73604"
],
"sabiork":[
"1336"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00330"
]
}
},
{
"id":"pg161_p",
"name":"Phosphatidylglycerol (dihexadec-9-enoyl, n-C16:1)",
"compartment":"p",
"charge":-1,
"formula":"C38H70O10P1",
"notes":{
"original_bigg_ids":[
"pg161_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg161"
],
"biocyc":[
"META:CPD0-2330"
],
"inchi_key":[
"GHQNERCMPIDAAU-ANXSUKRNSA-M"
],
"metanetx.chemical":[
"MNXM75101"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15539",
"cpd26463"
]
}
},
{
"id":"3sala_c",
"name":"3-Sulfino-L-alanine",
"compartment":"c",
"charge":-2,
"formula":"C3H5NO4S",
"notes":{
"original_bigg_ids":[
"3sala_c"
]
},
"annotation":{
"bigg.metabolite":[
"3sala"
],
"biocyc":[
"META:3-SULFINOALANINE"
],
"chebi":[
"CHEBI:61085",
"CHEBI:16345",
"CHEBI:41721",
"CHEBI:21271",
"CHEBI:11888",
"CHEBI:41618",
"CHEBI:8973",
"CHEBI:1664",
"CHEBI:224037",
"CHEBI:11889"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/aa80c146-8c4c-4ce4-9276-0d8d56942369"
],
"hmdb":[
"HMDB00996",
"HMDB60179"
],
"inchi_key":[
"ADVPTQAUNPRNPO-REOHCLBHSA-M"
],
"kegg.compound":[
"C00606"
],
"metanetx.chemical":[
"MNXM498"
],
"reactome.compound":[
"1614519"
],
"sabiork":[
"5155"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00467"
]
}
},
{
"id":"pg180_p",
"name":"Phosphatidylglycerol (dioctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":-1,
"formula":"C42H82O10P1",
"notes":{
"original_bigg_ids":[
"pg180_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg180"
],
"biocyc":[
"META:CPD-12822"
],
"hmdb":[
"HMDB10602"
],
"inchi_key":[
"FVJZSBGHRPJMMA-IOLBBIBUSA-M"
],
"lipidmaps":[
"LMGP04010038"
],
"metanetx.chemical":[
"MNXM75102"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15540",
"cpd23600"
],
"slm":[
"000041308"
]
}
},
{
"id":"dhpt_c",
"name":"Dihydropteroate",
"compartment":"c",
"charge":-1,
"formula":"C14H13N6O3",
"notes":{
"original_bigg_ids":[
"dhpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhpt"
],
"biocyc":[
"META:7-8-DIHYDROPTEROATE"
],
"chebi":[
"CHEBI:23762",
"CHEBI:17839",
"CHEBI:14160",
"CHEBI:4581"
],
"hmdb":[
"HMDB01412"
],
"inchi_key":[
"WBFYVDCHGVNRBH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00921"
],
"metanetx.chemical":[
"MNXM722728"
],
"sabiork":[
"5318"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28675",
"cpd00683",
"cpd28673"
]
}
},
{
"id":"pa180_p",
"name":"1,2-dioctadecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C39H75O8P1",
"notes":{
"original_bigg_ids":[
"pa180_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa180"
],
"biocyc":[
"META:CPD0-1423"
],
"chebi":[
"CHEBI:82921",
"CHEBI:83774"
],
"inchi_key":[
"YFWHNAWEOZTIPI-DIPNUNPCSA-L"
],
"lipidmaps":[
"LMGP10010028"
],
"metanetx.chemical":[
"MNXM51279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15526",
"cpd26148"
],
"slm":[
"000025492"
]
}
},
{
"id":"so2_c",
"name":"Sulfur dioxide",
"compartment":"c",
"charge":0,
"formula":"O2S",
"notes":{
"original_bigg_ids":[
"so2_c"
]
},
"annotation":{
"bigg.metabolite":[
"so2"
],
"biocyc":[
"META:SULFUR-DIOXIDE"
],
"chebi":[
"CHEBI:45789",
"CHEBI:18422",
"CHEBI:9351",
"CHEBI:8992"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/739d918d-f0e0-4b19-900c-7abb204b45c0"
],
"hmdb":[
"HMDB34834"
],
"inchi_key":[
"RAHZWNYVWXNFOC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C09306"
],
"kegg.drug":[
"D05961"
],
"metanetx.chemical":[
"MNXM4835"
],
"sabiork":[
"2804"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd06201"
]
}
},
{
"id":"clpn180_p",
"name":"Cardiolipin (tetraoctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":-2,
"formula":"C81H156O17P2",
"notes":{
"original_bigg_ids":[
"clpn180_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn180"
],
"metanetx.chemical":[
"MNXM5079"
],
"sbo":"SBO:0000247"
}
},
{
"id":"octdp_c",
"name":"All-trans-Octaprenyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C40H65O7P2",
"notes":{
"original_bigg_ids":[
"octdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"octdp"
],
"biocyc":[
"META:OCTAPRENYL-DIPHOSPHATE"
],
"chebi":[
"CHEBI:12781",
"CHEBI:57711",
"CHEBI:53045",
"CHEBI:22346",
"CHEBI:44585",
"CHEBI:16275",
"CHEBI:10194"
],
"hmdb":[
"HMDB01094"
],
"inchi_key":[
"IKKLDISSULFFQO-DJMILUHSSA-K"
],
"kegg.compound":[
"C04146"
],
"lipidmaps":[
"LMPR01070226"
],
"metanetx.chemical":[
"MNXM811"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30761",
"cpd02557"
]
}
},
{
"id":"cyst__L_c",
"name":"L-Cystathionine",
"compartment":"c",
"charge":0,
"formula":"C7H14N2O4S",
"notes":{
"original_bigg_ids":[
"cyst_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"cyst__L"
],
"biocyc":[
"META:L-CYSTATHIONINE"
],
"chebi":[
"CHEBI:13093",
"CHEBI:17482",
"CHEBI:6205",
"CHEBI:21259",
"CHEBI:58161"
],
"hmdb":[
"HMDB00099",
"HMDB03614"
],
"inchi_key":[
"ILRYLPWNYFXEMH-WHFBIAKZSA-N"
],
"kegg.compound":[
"C02291"
],
"metanetx.chemical":[
"MNXM319"
],
"reactome.compound":[
"1614518"
],
"sabiork":[
"6114"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19019"
]
}
},
{
"id":"dhna_c",
"name":"1,4-Dihydroxy-2-naphthoate",
"compartment":"c",
"charge":-1,
"formula":"C11H7O4",
"notes":{
"original_bigg_ids":[
"dhna_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhna"
],
"biocyc":[
"META:DIHYDROXYNAPHTHOATE"
],
"chebi":[
"CHEBI:11173",
"CHEBI:539",
"CHEBI:18933",
"CHEBI:18094"
],
"inchi_key":[
"VOJUXHHACRXLTD-UHFFFAOYSA-M"
],
"kegg.compound":[
"C03657"
],
"metanetx.chemical":[
"MNXM552"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02295"
]
}
},
{
"id":"pg181_p",
"name":"Phosphatidylglycerol (dioctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":-1,
"formula":"C42H78O10P1",
"notes":{
"original_bigg_ids":[
"pg181_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg181"
],
"biocyc":[
"META:CPD-18396"
],
"metanetx.chemical":[
"MNXM1773"
],
"sbo":"SBO:0000247",
"slm":[
"000041239"
]
}
},
{
"id":"hcys__L_c",
"name":"L-Homocysteine",
"compartment":"c",
"charge":0,
"formula":"C4H9NO2S",
"notes":{
"original_bigg_ids":[
"hcys_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"hcys__L"
],
"biocyc":[
"META:HOMO-CYS"
],
"chebi":[
"CHEBI:43117",
"CHEBI:21329",
"CHEBI:58199",
"CHEBI:66952",
"CHEBI:6245",
"CHEBI:17588",
"CHEBI:17230",
"CHEBI:13122",
"CHEBI:14408",
"CHEBI:58065",
"CHEBI:5751",
"CHEBI:63072"
],
"hmdb":[
"HMDB00165",
"HMDB00742"
],
"inchi_key":[
"FFFHZYDWPBMWHY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C05330",
"C00155"
],
"metanetx.chemical":[
"MNXM123"
],
"reactome.compound":[
"174369"
],
"sabiork":[
"1950",
"2768"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19034",
"cpd00135"
]
}
},
{
"id":"pa181_p",
"name":"1,2-dioctadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C39H71O8P1",
"notes":{
"original_bigg_ids":[
"pa181_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa181"
],
"metanetx.chemical":[
"MNXM90511"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15527"
]
}
},
{
"id":"gcald_c",
"name":"Glycolaldehyde",
"compartment":"c",
"charge":0,
"formula":"C2H4O2",
"notes":{
"original_bigg_ids":[
"gcald_c"
]
},
"annotation":{
"bigg.metabolite":[
"gcald"
],
"biocyc":[
"META:GLYCOLALDEHYDE"
],
"chebi":[
"CHEBI:17071",
"CHEBI:14347",
"CHEBI:5474",
"CHEBI:24386",
"CHEBI:131198"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e2dfc2d7-7e7a-4d56-be42-e908339482d8",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/63cc62ab-fc6a-445b-95c3-063343133b84",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ce61ea61-b391-41cd-91ac-507b44085575"
],
"hmdb":[
"HMDB02165",
"HMDB03344"
],
"inchi_key":[
"WGCNASOHLSPBMP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00266"
],
"metanetx.chemical":[
"MNXM349"
],
"sabiork":[
"2004"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00229"
]
}
},
{
"id":"trnacys_c",
"name":"TRNA(Cys)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnacys_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnacys"
],
"biocyc":[
"META:CYS-tRNAs"
],
"chebi":[
"CHEBI:15173",
"CHEBI:10678",
"CHEBI:29167"
],
"kegg.compound":[
"C01639"
],
"metanetx.chemical":[
"MNXM162355"
],
"reactome.compound":[
"379725",
"379714"
],
"sabiork":[
"3834"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26668",
"cpd11910"
]
}
},
{
"id":"6hmhpt_c",
"name":"6-hydroxymethyl dihydropterin",
"compartment":"c",
"charge":0,
"formula":"C7H9N5O2",
"notes":{
"original_bigg_ids":[
"6hmhpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"6hmhpt"
],
"biocyc":[
"META:AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE"
],
"chebi":[
"CHEBI:19456",
"CHEBI:1003",
"CHEBI:11511",
"CHEBI:17083",
"CHEBI:44841"
],
"inchi_key":[
"CQQNNQTXUGLUEV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01300"
],
"metanetx.chemical":[
"MNXM937"
],
"sabiork":[
"5516"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29670",
"cpd00954"
]
}
},
{
"id":"dhnpt_c",
"name":"Dihydroneopterin",
"compartment":"c",
"charge":0,
"formula":"C9H13N5O4",
"notes":{
"original_bigg_ids":[
"dhnpt_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhnpt"
],
"biocyc":[
"META:DIHYDRO-NEO-PTERIN"
],
"chebi":[
"CHEBI:30567",
"CHEBI:11510",
"CHEBI:17001",
"CHEBI:44427",
"CHEBI:1001",
"CHEBI:19454"
],
"hmdb":[
"HMDB02275"
],
"inchi_key":[
"YQIFAMYNGGOTFB-XINAWCOVSA-N"
],
"kegg.compound":[
"C04874"
],
"metanetx.chemical":[
"MNXM162359"
],
"sabiork":[
"7637"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02961"
]
}
},
{
"id":"clpn181_p",
"name":"Cardiolipin (tetraoctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":-2,
"formula":"C81H148O17P2",
"notes":{
"original_bigg_ids":[
"clpn181_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn181"
],
"biocyc":[
"META:CPD-19675"
],
"chebi":[
"CHEBI:105685"
],
"inchi_key":[
"HSSSADMXQPKIEB-GXYAQEMJSA-L"
],
"metanetx.chemical":[
"MNXM4503"
],
"sbo":"SBO:0000247"
}
},
{
"id":"cystrna_c",
"name":"L-Cysteinyl-tRNA(Cys)",
"compartment":"c",
"charge":1,
"formula":"C3H6NOSR",
"notes":{
"original_bigg_ids":[
"cystrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"cystrna"
],
"chebi":[
"CHEBI:74764",
"CHEBI:29152",
"CHEBI:6208",
"CHEBI:13096"
],
"kegg.compound":[
"C03125"
],
"metanetx.chemical":[
"MNXM155005"
],
"reactome.compound":[
"379713",
"379719"
],
"sabiork":[
"3855"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12255"
]
}
},
{
"id":"glyc_p",
"name":"Glycerol",
"compartment":"p",
"charge":0,
"formula":"C3H8O3",
"notes":{
"original_bigg_ids":[
"glyc_p"
]
},
"annotation":{
"bigg.metabolite":[
"glyc"
],
"biocyc":[
"META:GLYCEROL"
],
"chebi":[
"CHEBI:5448",
"CHEBI:14334",
"CHEBI:42998",
"CHEBI:17754",
"CHEBI:24351",
"CHEBI:131422"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/48edd8a9-6a4a-4900-b0cf-97b1ccaa1125",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2e8c8093-3269-46b3-be2e-f1df9fdde25c"
],
"hmdb":[
"HMDB00131"
],
"inchi_key":[
"PEDCQBHIVMGVHV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00116"
],
"kegg.drug":[
"D00028"
],
"metanetx.chemical":[
"MNXM89612"
],
"reactome.compound":[
"192438",
"76116"
],
"sabiork":[
"1303"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00100"
]
}
},
{
"id":"orot_c",
"name":"Orotate C5H3N2O4",
"compartment":"c",
"charge":-1,
"formula":"C5H3N2O4",
"notes":{
"original_bigg_ids":[
"orot_c"
]
},
"annotation":{
"bigg.metabolite":[
"orot"
],
"biocyc":[
"META:OROTATE"
],
"chebi":[
"CHEBI:14698",
"CHEBI:7787",
"CHEBI:16742",
"CHEBI:25720",
"CHEBI:44781",
"CHEBI:30839",
"CHEBI:25719"
],
"hmdb":[
"HMDB00226"
],
"inchi_key":[
"PXQPEWDEAKTCGB-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00295"
],
"kegg.drug":[
"D00055"
],
"metanetx.chemical":[
"MNXM235"
],
"reactome.compound":[
"76632"
],
"sabiork":[
"2009"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00247"
]
}
},
{
"id":"cys__L_p",
"name":"L-Cysteine",
"compartment":"p",
"charge":0,
"formula":"C3H7NO2S",
"notes":{
"original_bigg_ids":[
"cys_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"cys__L"
],
"biocyc":[
"META:CYS"
],
"chebi":[
"CHEBI:32457",
"CHEBI:15356",
"CHEBI:4050",
"CHEBI:32456",
"CHEBI:21261",
"CHEBI:41811",
"CHEBI:14061",
"CHEBI:32443",
"CHEBI:32458",
"CHEBI:32442",
"CHEBI:13095",
"CHEBI:41768",
"CHEBI:23508",
"CHEBI:32445",
"CHEBI:35235",
"CHEBI:17561",
"CHEBI:41700",
"CHEBI:6207",
"CHEBI:41781",
"CHEBI:35237",
"CHEBI:41227"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1271bedc-d0c8-4aa1-83dc-571304dd14a8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/02361658-c991-436f-ba62-fafbccfdae5e"
],
"hmdb":[
"HMDB00574"
],
"inchi_key":[
"XUJNEKJLAYXESH-REOHCLBHSA-N"
],
"kegg.compound":[
"C00736",
"C00097"
],
"kegg.drug":[
"D00026"
],
"metanetx.chemical":[
"MNXM55"
],
"reactome.compound":[
"352016",
"379721",
"111707",
"5668576"
],
"sabiork":[
"2142",
"78"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00084",
"cpd00547"
]
}
},
{
"id":"dhor__S_c",
"name":"(S)-Dihydroorotate",
"compartment":"c",
"charge":-1,
"formula":"C5H5N2O4",
"notes":{
"original_bigg_ids":[
"dhor_S_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhor__S"
],
"biocyc":[
"META:DI-H-OROTATE"
],
"chebi":[
"CHEBI:417",
"CHEBI:11063",
"CHEBI:17025",
"CHEBI:30864",
"CHEBI:42132",
"CHEBI:18777",
"CHEBI:18778"
],
"hmdb":[
"HMDB03349"
],
"inchi_key":[
"UFIVEPVSAGBUSI-REOHCLBHSA-M"
],
"kegg.compound":[
"C00337"
],
"metanetx.chemical":[
"MNXM252"
],
"reactome.compound":[
"76630"
],
"sabiork":[
"2022"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00282"
]
}
},
{
"id":"cl_c",
"name":"Chloride",
"compartment":"c",
"charge":-1,
"formula":"Cl",
"notes":{
"original_bigg_ids":[
"cl_c"
]
},
"annotation":{
"bigg.metabolite":[
"cl"
],
"biocyc":[
"META:HCL",
"META:CL-"
],
"chebi":[
"CHEBI:24635",
"CHEBI:3731",
"CHEBI:13364",
"CHEBI:3616",
"CHEBI:13291",
"CHEBI:17883",
"CHEBI:48804",
"CHEBI:13970",
"CHEBI:5590",
"CHEBI:50315",
"CHEBI:17996"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/8797b51e-be83-48e1-82db-612c84006fdf",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b3225d45-6d2f-4312-a60d-70c87b617ad4"
],
"hmdb":[
"HMDB00492",
"HMDB02073",
"HMDB02306",
"HMDB02162"
],
"inchi_key":[
"VEXZGXHMUGYJMC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00698",
"C01327"
],
"kegg.drug":[
"D02057"
],
"metanetx.chemical":[
"MNXM43"
],
"reactome.compound":[
"29572",
"188972",
"3301973",
"352022",
"2731020",
"2731008",
"2730999"
],
"sabiork":[
"2270",
"51"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00099"
]
}
},
{
"id":"cl_p",
"name":"Chloride",
"compartment":"p",
"charge":-1,
"formula":"Cl",
"notes":{
"original_bigg_ids":[
"cl_p"
]
},
"annotation":{
"bigg.metabolite":[
"cl"
],
"biocyc":[
"META:HCL",
"META:CL-"
],
"chebi":[
"CHEBI:24635",
"CHEBI:3731",
"CHEBI:13364",
"CHEBI:3616",
"CHEBI:13291",
"CHEBI:17883",
"CHEBI:48804",
"CHEBI:13970",
"CHEBI:5590",
"CHEBI:50315",
"CHEBI:17996"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/8797b51e-be83-48e1-82db-612c84006fdf",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b3225d45-6d2f-4312-a60d-70c87b617ad4"
],
"hmdb":[
"HMDB00492",
"HMDB02073",
"HMDB02306",
"HMDB02162"
],
"inchi_key":[
"VEXZGXHMUGYJMC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00698",
"C01327"
],
"kegg.drug":[
"D02057"
],
"metanetx.chemical":[
"MNXM43"
],
"reactome.compound":[
"29572",
"188972",
"3301973",
"352022",
"2731020",
"2731008",
"2730999"
],
"sabiork":[
"2270",
"51"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00099"
]
}
},
{
"id":"cysi__L_p",
"name":"L Cystine C6H12N2O4S2",
"compartment":"p",
"charge":0,
"formula":"C6H12N2O4S2",
"notes":{
"original_bigg_ids":[
"cysi_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"cysi__L"
],
"biocyc":[
"META:CYSTINE"
],
"chebi":[
"CHEBI:6209",
"CHEBI:35491",
"CHEBI:63163",
"CHEBI:13097",
"CHEBI:16283",
"CHEBI:21278"
],
"hmdb":[
"HMDB00192"
],
"inchi_key":[
"LEVWYRKDKASIDU-IMJSIDKUSA-N"
],
"kegg.compound":[
"C00491"
],
"kegg.drug":[
"D03636"
],
"metanetx.chemical":[
"MNXM927"
],
"sabiork":[
"2060"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00381"
]
}
},
{
"id":"cl_e",
"name":"Chloride",
"compartment":"e",
"charge":-1,
"formula":"Cl",
"notes":{
"original_bigg_ids":[
"cl_e"
]
},
"annotation":{
"bigg.metabolite":[
"cl"
],
"biocyc":[
"META:HCL",
"META:CL-"
],
"chebi":[
"CHEBI:24635",
"CHEBI:3731",
"CHEBI:13364",
"CHEBI:3616",
"CHEBI:13291",
"CHEBI:17883",
"CHEBI:48804",
"CHEBI:13970",
"CHEBI:5590",
"CHEBI:50315",
"CHEBI:17996"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/8797b51e-be83-48e1-82db-612c84006fdf",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b3225d45-6d2f-4312-a60d-70c87b617ad4"
],
"hmdb":[
"HMDB00492",
"HMDB02073",
"HMDB02306",
"HMDB02162"
],
"inchi_key":[
"VEXZGXHMUGYJMC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00698",
"C01327"
],
"kegg.drug":[
"D02057"
],
"metanetx.chemical":[
"MNXM43"
],
"reactome.compound":[
"29572",
"188972",
"3301973",
"352022",
"2731020",
"2731008",
"2730999"
],
"sabiork":[
"2270",
"51"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00099"
]
}
},
{
"id":"25drapp_c",
"name":"2,5-Diamino-6-(ribosylamino)-4-(3H)-pyrimidinone 5'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C9H14N5O8P",
"notes":{
"original_bigg_ids":[
"25drapp_c"
]
},
"annotation":{
"bigg.metabolite":[
"25drapp"
],
"biocyc":[
"META:DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR"
],
"chebi":[
"CHEBI:19368",
"CHEBI:59545",
"CHEBI:29114",
"CHEBI:58614",
"CHEBI:927",
"CHEBI:11446",
"CHEBI:59546"
],
"inchi_key":[
"OCLCLRXKNJCOJD-UMMCILCDSA-L"
],
"kegg.compound":[
"C01304"
],
"metanetx.chemical":[
"MNXM648"
],
"sbo":"SBO:0000247"
}
},
{
"id":"cysi__L_c",
"name":"L Cystine C6H12N2O4S2",
"compartment":"c",
"charge":0,
"formula":"C6H12N2O4S2",
"notes":{
"original_bigg_ids":[
"cysi_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"cysi__L"
],
"biocyc":[
"META:CYSTINE"
],
"chebi":[
"CHEBI:6209",
"CHEBI:35491",
"CHEBI:63163",
"CHEBI:13097",
"CHEBI:16283",
"CHEBI:21278"
],
"hmdb":[
"HMDB00192"
],
"inchi_key":[
"LEVWYRKDKASIDU-IMJSIDKUSA-N"
],
"kegg.compound":[
"C00491"
],
"kegg.drug":[
"D03636"
],
"metanetx.chemical":[
"MNXM927"
],
"sabiork":[
"2060"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00381"
]
}
},
{
"id":"6hmhptpp_c",
"name":"6-hydroxymethyl-dihydropterin pyrophosphate",
"compartment":"c",
"charge":-3,
"formula":"C7H8N5O8P2",
"notes":{
"original_bigg_ids":[
"6hmhptpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"6hmhptpp"
],
"biocyc":[
"META:DIHYDROPTERIN-CH2OH-PP"
],
"chebi":[
"CHEBI:15998",
"CHEBI:11512",
"CHEBI:11517",
"CHEBI:72950",
"CHEBI:73083",
"CHEBI:1011",
"CHEBI:57602",
"CHEBI:19465"
],
"inchi_key":[
"FCQGJGLSOWZZON-UHFFFAOYSA-K"
],
"kegg.compound":[
"C04807"
],
"metanetx.chemical":[
"MNXM1160"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16760"
]
}
},
{
"id":"dhptd_c",
"name":"4,5-dihydroxy-2,3-pentanedione",
"compartment":"c",
"charge":0,
"formula":"C5H8O4",
"notes":{
"original_bigg_ids":[
"dhptd_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhptd"
],
"biocyc":[
"META:DIHYDROXYPENTANEDIONE"
],
"chebi":[
"CHEBI:29484"
],
"inchi_key":[
"UYTRITJAZOPLCZ-BYPYZUCNSA-N"
],
"kegg.compound":[
"C11838"
],
"metanetx.chemical":[
"MNXM2449"
],
"sabiork":[
"13894"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08636",
"cpd08638"
]
}
},
{
"id":"csn_c",
"name":"Cytosine",
"compartment":"c",
"charge":0,
"formula":"C4H5N3O",
"notes":{
"original_bigg_ids":[
"csn_c"
]
},
"annotation":{
"bigg.metabolite":[
"csn"
],
"biocyc":[
"META:CYTOSINE"
],
"chebi":[
"CHEBI:23531",
"CHEBI:4072",
"CHEBI:14066",
"CHEBI:16040",
"CHEBI:41732"
],
"hmdb":[
"HMDB00630"
],
"inchi_key":[
"OPTASPLRGRRNAP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00380"
],
"metanetx.chemical":[
"MNXM761"
],
"sabiork":[
"58"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00307"
]
}
},
{
"id":"cmp_e",
"name":"CMP C9H12N3O8P",
"compartment":"e",
"charge":-2,
"formula":"C9H12N3O8P",
"notes":{
"original_bigg_ids":[
"cmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"cmp"
],
"biocyc":[
"META:CMP"
],
"chebi":[
"CHEBI:60377",
"CHEBI:41312",
"CHEBI:58120",
"CHEBI:3275",
"CHEBI:41691",
"CHEBI:41319",
"CHEBI:23520",
"CHEBI:17361",
"CHEBI:13274",
"CHEBI:47362",
"CHEBI:48799",
"CHEBI:41666"
],
"hmdb":[
"HMDB00095"
],
"inchi_key":[
"IERHLVCPSMICTF-XVFCMESISA-L"
],
"kegg.compound":[
"C00055"
],
"kegg.glycan":[
"G10621"
],
"metanetx.chemical":[
"MNXM31"
],
"reactome.compound":[
"1524067",
"727810",
"109395"
],
"sabiork":[
"1284"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00046"
]
}
},
{
"id":"cys__L_e",
"name":"L-Cysteine",
"compartment":"e",
"charge":0,
"formula":"C3H7NO2S",
"notes":{
"original_bigg_ids":[
"cys_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"cys__L"
],
"biocyc":[
"META:CYS"
],
"chebi":[
"CHEBI:32457",
"CHEBI:15356",
"CHEBI:4050",
"CHEBI:32456",
"CHEBI:21261",
"CHEBI:41811",
"CHEBI:14061",
"CHEBI:32443",
"CHEBI:32458",
"CHEBI:32442",
"CHEBI:13095",
"CHEBI:41768",
"CHEBI:23508",
"CHEBI:32445",
"CHEBI:35235",
"CHEBI:17561",
"CHEBI:41700",
"CHEBI:6207",
"CHEBI:41781",
"CHEBI:35237",
"CHEBI:41227"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1271bedc-d0c8-4aa1-83dc-571304dd14a8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/02361658-c991-436f-ba62-fafbccfdae5e"
],
"hmdb":[
"HMDB00574"
],
"inchi_key":[
"XUJNEKJLAYXESH-REOHCLBHSA-N"
],
"kegg.compound":[
"C00736",
"C00097"
],
"kegg.drug":[
"D00026"
],
"metanetx.chemical":[
"MNXM55"
],
"reactome.compound":[
"352016",
"379721",
"111707",
"5668576"
],
"sabiork":[
"2142",
"78"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00084",
"cpd00547"
]
}
},
{
"id":"cmp_p",
"name":"CMP C9H12N3O8P",
"compartment":"p",
"charge":-2,
"formula":"C9H12N3O8P",
"notes":{
"original_bigg_ids":[
"cmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"cmp"
],
"biocyc":[
"META:CMP"
],
"chebi":[
"CHEBI:60377",
"CHEBI:41312",
"CHEBI:58120",
"CHEBI:3275",
"CHEBI:41691",
"CHEBI:41319",
"CHEBI:23520",
"CHEBI:17361",
"CHEBI:13274",
"CHEBI:47362",
"CHEBI:48799",
"CHEBI:41666"
],
"hmdb":[
"HMDB00095"
],
"inchi_key":[
"IERHLVCPSMICTF-XVFCMESISA-L"
],
"kegg.compound":[
"C00055"
],
"kegg.glycan":[
"G10621"
],
"metanetx.chemical":[
"MNXM31"
],
"reactome.compound":[
"1524067",
"727810",
"109395"
],
"sabiork":[
"1284"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00046"
]
}
},
{
"id":"hmfurn_c",
"name":"4-hydroxy-5-methyl-3(2H)-furanone",
"compartment":"c",
"charge":0,
"formula":"C5H6O3",
"notes":{
"original_bigg_ids":[
"hmfurn_c"
]
},
"annotation":{
"bigg.metabolite":[
"hmfurn"
],
"biocyc":[
"META:CPD-10204"
],
"chebi":[
"CHEBI:74456"
],
"hmdb":[
"HMDB31859"
],
"inchi_key":[
"DLVYTANECMRFGX-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM6359"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15486"
]
}
},
{
"id":"cysi__L_e",
"name":"L Cystine C6H12N2O4S2",
"compartment":"e",
"charge":0,
"formula":"C6H12N2O4S2",
"notes":{
"original_bigg_ids":[
"cysi_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"cysi__L"
],
"biocyc":[
"META:CYSTINE"
],
"chebi":[
"CHEBI:6209",
"CHEBI:35491",
"CHEBI:63163",
"CHEBI:13097",
"CHEBI:16283",
"CHEBI:21278"
],
"hmdb":[
"HMDB00192"
],
"inchi_key":[
"LEVWYRKDKASIDU-IMJSIDKUSA-N"
],
"kegg.compound":[
"C00491"
],
"kegg.drug":[
"D03636"
],
"metanetx.chemical":[
"MNXM927"
],
"sabiork":[
"2060"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00381"
]
}
},
{
"id":"3dhq_c",
"name":"3-Dehydroquinate",
"compartment":"c",
"charge":-1,
"formula":"C7H9O6",
"notes":{
"original_bigg_ids":[
"3dhq_c"
]
},
"annotation":{
"bigg.metabolite":[
"3dhq"
],
"biocyc":[
"META:DEHYDROQUINATE"
],
"chebi":[
"CHEBI:19997",
"CHEBI:32364",
"CHEBI:1487",
"CHEBI:12122",
"CHEBI:17947",
"CHEBI:11781",
"CHEBI:42078"
],
"hmdb":[
"HMDB12710"
],
"inchi_key":[
"WVMWZWGZRAXUBK-SYTVJDICSA-M"
],
"kegg.compound":[
"C00944"
],
"metanetx.chemical":[
"MNXM478"
],
"reactome.compound":[
"964921"
],
"sabiork":[
"27311",
"5328"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00699"
]
}
},
{
"id":"co2_e",
"name":"CO2 CO2",
"compartment":"e",
"charge":0,
"formula":"CO2",
"notes":{
"original_bigg_ids":[
"co2_e"
]
},
"annotation":{
"bigg.metabolite":[
"co2"
],
"biocyc":[
"META:CARBON-DIOXIDE"
],
"chebi":[
"CHEBI:23011",
"CHEBI:3283",
"CHEBI:48829",
"CHEBI:16526",
"CHEBI:13283",
"CHEBI:13285",
"CHEBI:13284",
"CHEBI:13282"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2ec3da94-5f50-4525-81b1-5607c5c7a3d3",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379"
],
"hmdb":[
"HMDB01967"
],
"inchi_key":[
"CURLTUGMZLYLDI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00011"
],
"kegg.drug":[
"D00004"
],
"metanetx.chemical":[
"MNXM13"
],
"reactome.compound":[
"29376",
"5668565",
"189480",
"1132345",
"113528",
"1237009",
"159751",
"389536",
"159942"
],
"sabiork":[
"1266"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00011"
]
}
},
{
"id":"uri_c",
"name":"Uridine",
"compartment":"c",
"charge":0,
"formula":"C9H12N2O6",
"notes":{
"original_bigg_ids":[
"uri_c"
]
},
"annotation":{
"bigg.metabolite":[
"uri"
],
"biocyc":[
"META:URIDINE"
],
"chebi":[
"CHEBI:46386",
"CHEBI:9893",
"CHEBI:46460",
"CHEBI:16704",
"CHEBI:46391",
"CHEBI:15296",
"CHEBI:46463",
"CHEBI:27227"
],
"hmdb":[
"HMDB00296"
],
"inchi_key":[
"DRTQHJPVMGBUCF-XVFCMESISA-N"
],
"kegg.compound":[
"C00299"
],
"metanetx.chemical":[
"MNXM288"
],
"sabiork":[
"1326"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00249"
]
}
},
{
"id":"cobalt2_c",
"name":"Co2+",
"compartment":"c",
"charge":2,
"formula":"Co",
"notes":{
"original_bigg_ids":[
"cobalt2_c"
]
},
"annotation":{
"bigg.metabolite":[
"cobalt2"
],
"biocyc":[
"META:CO+2"
],
"chebi":[
"CHEBI:48828",
"CHEBI:48827",
"CHEBI:23337"
],
"hmdb":[
"HMDB00608"
],
"inchi_key":[
"XLJKHNWPARRRJB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00175"
],
"metanetx.chemical":[
"MNXM90960"
],
"sabiork":[
"23"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00149"
]
}
},
{
"id":"3dhsk_c",
"name":"3-Dehydroshikimate",
"compartment":"c",
"charge":-1,
"formula":"C7H7O5",
"notes":{
"original_bigg_ids":[
"3dhsk_c"
]
},
"annotation":{
"bigg.metabolite":[
"3dhsk"
],
"biocyc":[
"META:3-DEHYDRO-SHIKIMATE"
],
"chebi":[
"CHEBI:1488",
"CHEBI:2052",
"CHEBI:12123",
"CHEBI:30918",
"CHEBI:17841",
"CHEBI:20566",
"CHEBI:19998",
"CHEBI:19999",
"CHEBI:11782",
"CHEBI:16630",
"CHEBI:42005"
],
"inchi_key":[
"SLWWJZMPHJJOPH-PHDIDXHHSA-M"
],
"kegg.compound":[
"C02637"
],
"metanetx.chemical":[
"MNXM611"
],
"reactome.compound":[
"964941"
],
"sabiork":[
"6290",
"27313"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01716"
]
}
},
{
"id":"cytd_c",
"name":"Cytidine",
"compartment":"c",
"charge":0,
"formula":"C9H13N3O5",
"notes":{
"original_bigg_ids":[
"cytd_c"
]
},
"annotation":{
"bigg.metabolite":[
"cytd"
],
"biocyc":[
"META:CYTIDINE"
],
"chebi":[
"CHEBI:41686",
"CHEBI:41709",
"CHEBI:4053",
"CHEBI:23515",
"CHEBI:17562",
"CHEBI:14063",
"CHEBI:41649",
"CHEBI:41704"
],
"hmdb":[
"HMDB00089"
],
"inchi_key":[
"UHDGCWIWMRVCDJ-XVFCMESISA-N"
],
"kegg.compound":[
"C00475"
],
"kegg.drug":[
"D07769"
],
"metanetx.chemical":[
"MNXM338"
],
"sabiork":[
"1340"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00367"
]
}
},
{
"id":"dimp_e",
"name":"DIMP C10H12N4O7P",
"compartment":"e",
"charge":-2,
"formula":"C10H11N4O7P",
"notes":{
"original_bigg_ids":[
"dimp_e"
]
},
"annotation":{
"bigg.metabolite":[
"dimp"
],
"biocyc":[
"META:DIMP"
],
"chebi":[
"CHEBI:41998",
"CHEBI:43389",
"CHEBI:61194",
"CHEBI:19250",
"CHEBI:43315",
"CHEBI:44500",
"CHEBI:837",
"CHEBI:43384",
"CHEBI:43377",
"CHEBI:28806"
],
"hmdb":[
"HMDB06555"
],
"inchi_key":[
"PHNGFPPXDJJADG-RRKCRQDMSA-L"
],
"kegg.compound":[
"C06196"
],
"metanetx.chemical":[
"MNXM1922"
],
"reactome.compound":[
"109330",
"2509805"
],
"sabiork":[
"1858"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03704"
]
}
},
{
"id":"cobalt2_p",
"name":"Co2+",
"compartment":"p",
"charge":2,
"formula":"Co",
"notes":{
"original_bigg_ids":[
"cobalt2_p"
]
},
"annotation":{
"bigg.metabolite":[
"cobalt2"
],
"biocyc":[
"META:CO+2"
],
"chebi":[
"CHEBI:48828",
"CHEBI:48827",
"CHEBI:23337"
],
"hmdb":[
"HMDB00608"
],
"inchi_key":[
"XLJKHNWPARRRJB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00175"
],
"metanetx.chemical":[
"MNXM90960"
],
"sabiork":[
"23"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00149"
]
}
},
{
"id":"cobalt2_e",
"name":"Co2+",
"compartment":"e",
"charge":2,
"formula":"Co",
"notes":{
"original_bigg_ids":[
"cobalt2_e"
]
},
"annotation":{
"bigg.metabolite":[
"cobalt2"
],
"biocyc":[
"META:CO+2"
],
"chebi":[
"CHEBI:48828",
"CHEBI:48827",
"CHEBI:23337"
],
"hmdb":[
"HMDB00608"
],
"inchi_key":[
"XLJKHNWPARRRJB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00175"
],
"metanetx.chemical":[
"MNXM90960"
],
"sabiork":[
"23"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00149"
]
}
},
{
"id":"cytd_e",
"name":"Cytidine",
"compartment":"e",
"charge":0,
"formula":"C9H13N3O5",
"notes":{
"original_bigg_ids":[
"cytd_e"
]
},
"annotation":{
"bigg.metabolite":[
"cytd"
],
"biocyc":[
"META:CYTIDINE"
],
"chebi":[
"CHEBI:41686",
"CHEBI:41709",
"CHEBI:4053",
"CHEBI:23515",
"CHEBI:17562",
"CHEBI:14063",
"CHEBI:41649",
"CHEBI:41704"
],
"hmdb":[
"HMDB00089"
],
"inchi_key":[
"UHDGCWIWMRVCDJ-XVFCMESISA-N"
],
"kegg.compound":[
"C00475"
],
"kegg.drug":[
"D07769"
],
"metanetx.chemical":[
"MNXM338"
],
"sabiork":[
"1340"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00367"
]
}
},
{
"id":"colipa_p",
"name":"Core oligosaccharide lipid A",
"compartment":"p",
"charge":-11,
"formula":"C176H303N2O100P4",
"notes":{
"original_bigg_ids":[
"colipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"colipa"
],
"biocyc":[
"META:CPD0-2271"
],
"inchi_key":[
"SFVRSCGTAWOHDB-JMYCZVSXSA-C"
],
"metanetx.chemical":[
"MNXM47647"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15432"
]
}
},
{
"id":"dimp_p",
"name":"DIMP C10H12N4O7P",
"compartment":"p",
"charge":-2,
"formula":"C10H11N4O7P",
"notes":{
"original_bigg_ids":[
"dimp_p"
]
},
"annotation":{
"bigg.metabolite":[
"dimp"
],
"biocyc":[
"META:DIMP"
],
"chebi":[
"CHEBI:41998",
"CHEBI:43389",
"CHEBI:61194",
"CHEBI:19250",
"CHEBI:43315",
"CHEBI:44500",
"CHEBI:837",
"CHEBI:43384",
"CHEBI:43377",
"CHEBI:28806"
],
"hmdb":[
"HMDB06555"
],
"inchi_key":[
"PHNGFPPXDJJADG-RRKCRQDMSA-L"
],
"kegg.compound":[
"C06196"
],
"metanetx.chemical":[
"MNXM1922"
],
"reactome.compound":[
"109330",
"2509805"
],
"sabiork":[
"1858"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03704"
]
}
},
{
"id":"cdp_c",
"name":"CDP C9H12N3O11P2",
"compartment":"c",
"charge":-3,
"formula":"C9H12N3O11P2",
"notes":{
"original_bigg_ids":[
"cdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdp"
],
"biocyc":[
"META:CDP"
],
"chebi":[
"CHEBI:41451",
"CHEBI:23519",
"CHEBI:3260",
"CHEBI:13254",
"CHEBI:17239",
"CHEBI:58069"
],
"hmdb":[
"HMDB01546"
],
"inchi_key":[
"ZWIADYZPOWUWEW-XVFCMESISA-K"
],
"kegg.compound":[
"C00112"
],
"metanetx.chemical":[
"MNXM220"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00096"
]
}
},
{
"id":"din_p",
"name":"Deoxyinosine",
"compartment":"p",
"charge":0,
"formula":"C10H12N4O4",
"notes":{
"original_bigg_ids":[
"din_p"
]
},
"annotation":{
"bigg.metabolite":[
"din"
],
"biocyc":[
"META:DEOXYINOSINE"
],
"chebi":[
"CHEBI:43437",
"CHEBI:28997",
"CHEBI:43436",
"CHEBI:39841",
"CHEBI:43293",
"CHEBI:23629",
"CHEBI:4413",
"CHEBI:19248"
],
"hmdb":[
"HMDB00071"
],
"inchi_key":[
"VGONTNSXDCQUGY-RRKCRQDMSA-N"
],
"kegg.compound":[
"C05512"
],
"metanetx.chemical":[
"MNXM935"
],
"sabiork":[
"1896"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03279"
]
}
},
{
"id":"colipa_c",
"name":"Core oligosaccharide lipid A",
"compartment":"c",
"charge":-11,
"formula":"C176H303N2O100P4",
"notes":{
"original_bigg_ids":[
"colipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"colipa"
],
"biocyc":[
"META:CPD0-2271"
],
"inchi_key":[
"SFVRSCGTAWOHDB-JMYCZVSXSA-C"
],
"metanetx.chemical":[
"MNXM47647"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15432"
]
}
},
{
"id":"dcdp_c",
"name":"DCDP C9H12N3O10P2",
"compartment":"c",
"charge":-3,
"formula":"C9H12N3O10P2",
"notes":{
"original_bigg_ids":[
"dcdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcdp"
],
"biocyc":[
"META:DCDP"
],
"chebi":[
"CHEBI:19241",
"CHEBI:28846",
"CHEBI:58593",
"CHEBI:10492",
"CHEBI:49966"
],
"hmdb":[
"HMDB01245"
],
"inchi_key":[
"FTDHDKPUHBLBTL-SHYZEUOFSA-K"
],
"kegg.compound":[
"C00705"
],
"metanetx.chemical":[
"MNXM411"
],
"sabiork":[
"1347"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00533"
]
}
},
{
"id":"colipa_e",
"name":"Core oligosaccharide lipid A",
"compartment":"e",
"charge":-11,
"formula":"C176H303N2O100P4",
"notes":{
"original_bigg_ids":[
"colipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"colipa"
],
"biocyc":[
"META:CPD0-2271"
],
"inchi_key":[
"SFVRSCGTAWOHDB-JMYCZVSXSA-C"
],
"metanetx.chemical":[
"MNXM47647"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15432"
]
}
},
{
"id":"din_e",
"name":"Deoxyinosine",
"compartment":"e",
"charge":0,
"formula":"C10H12N4O4",
"notes":{
"original_bigg_ids":[
"din_e"
]
},
"annotation":{
"bigg.metabolite":[
"din"
],
"biocyc":[
"META:DEOXYINOSINE"
],
"chebi":[
"CHEBI:43437",
"CHEBI:28997",
"CHEBI:43436",
"CHEBI:39841",
"CHEBI:43293",
"CHEBI:23629",
"CHEBI:4413",
"CHEBI:19248"
],
"hmdb":[
"HMDB00071"
],
"inchi_key":[
"VGONTNSXDCQUGY-RRKCRQDMSA-N"
],
"kegg.compound":[
"C05512"
],
"metanetx.chemical":[
"MNXM935"
],
"sabiork":[
"1896"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03279"
]
}
},
{
"id":"dcmp_c",
"name":"DCMP C9H12N3O7P",
"compartment":"c",
"charge":-2,
"formula":"C9H12N3O7P",
"notes":{
"original_bigg_ids":[
"dcmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcmp"
],
"biocyc":[
"META:DCMP"
],
"chebi":[
"CHEBI:15918",
"CHEBI:10493",
"CHEBI:41838",
"CHEBI:19242",
"CHEBI:14115",
"CHEBI:41875",
"CHEBI:14071",
"CHEBI:41881",
"CHEBI:57566",
"CHEBI:14070"
],
"hmdb":[
"HMDB01202"
],
"inchi_key":[
"NCMVOABPESMRCP-SHYZEUOFSA-L"
],
"kegg.compound":[
"C00239"
],
"metanetx.chemical":[
"MNXM266"
],
"reactome.compound":[
"109378",
"500828"
],
"sabiork":[
"63"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00206"
]
}
},
{
"id":"25dkglcn_c",
"name":"2,5-diketo-D-gluconate",
"compartment":"c",
"charge":-1,
"formula":"C6H7O7",
"notes":{
"original_bigg_ids":[
"25dkglcn_c"
]
},
"annotation":{
"bigg.metabolite":[
"25dkglcn"
],
"biocyc":[
"META:25-DIDEHYDRO-D-GLUCONATE"
],
"chebi":[
"CHEBI:1070",
"CHEBI:58428",
"CHEBI:18281",
"CHEBI:11449",
"CHEBI:19378"
],
"inchi_key":[
"RXMWXENJQAINCC-DMTCNVIQSA-M"
],
"kegg.compound":[
"C02780"
],
"lipidmaps":[
"LMFA01050471"
],
"metanetx.chemical":[
"MNXM936"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01793"
]
}
},
{
"id":"cpgn_c",
"name":"Coprogen",
"compartment":"c",
"charge":-1,
"formula":"C35H52N6O13Fe",
"notes":{
"original_bigg_ids":[
"cpgn_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpgn"
],
"chebi":[
"CHEBI:83101"
],
"inchi_key":[
"FQIVLXIUJLOKPL-DWZMLRRXSA-N"
],
"metanetx.chemical":[
"MNXM114191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15437"
]
}
},
{
"id":"din_c",
"name":"Deoxyinosine",
"compartment":"c",
"charge":0,
"formula":"C10H12N4O4",
"notes":{
"original_bigg_ids":[
"din_c"
]
},
"annotation":{
"bigg.metabolite":[
"din"
],
"biocyc":[
"META:DEOXYINOSINE"
],
"chebi":[
"CHEBI:43437",
"CHEBI:28997",
"CHEBI:43436",
"CHEBI:39841",
"CHEBI:43293",
"CHEBI:23629",
"CHEBI:4413",
"CHEBI:19248"
],
"hmdb":[
"HMDB00071"
],
"inchi_key":[
"VGONTNSXDCQUGY-RRKCRQDMSA-N"
],
"kegg.compound":[
"C05512"
],
"metanetx.chemical":[
"MNXM935"
],
"sabiork":[
"1896"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03279"
]
}
},
{
"id":"cpgn_un_c",
"name":"Coprogen unloaded (no Fe(III))",
"compartment":"c",
"charge":-4,
"formula":"C35H52N6O13",
"notes":{
"original_bigg_ids":[
"cpgn_un_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpgn_un"
],
"biocyc":[
"META:CPD0-2262"
],
"metanetx.chemical":[
"MNXM2999"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15438"
]
}
},
{
"id":"2kmb_c",
"name":"2-keto-4-methylthiobutyrate",
"compartment":"c",
"charge":-1,
"formula":"C5H7O3S",
"notes":{
"original_bigg_ids":[
"2kmb_c"
]
},
"annotation":{
"bigg.metabolite":[
"2kmb"
],
"biocyc":[
"META:CPD-479"
],
"chebi":[
"CHEBI:43720",
"CHEBI:22458",
"CHEBI:1902",
"CHEBI:63388",
"CHEBI:16723",
"CHEBI:33574",
"CHEBI:12029",
"CHEBI:20451"
],
"hmdb":[
"HMDB01553",
"HMDB13210"
],
"inchi_key":[
"SXFSQZDSUWACKX-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01180"
],
"lipidmaps":[
"LMFA01060170"
],
"metanetx.chemical":[
"MNXM276"
],
"reactome.compound":[
"1237122"
],
"sabiork":[
"5424"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00869"
]
}
},
{
"id":"dad_2_c",
"name":"Deoxyadenosine",
"compartment":"c",
"charge":0,
"formula":"C10H13N5O3",
"notes":{
"original_bigg_ids":[
"dad_2_c"
]
},
"annotation":{
"bigg.metabolite":[
"dad_2"
],
"biocyc":[
"META:DEOXYADENOSINE"
],
"chebi":[
"CHEBI:19234",
"CHEBI:4405",
"CHEBI:40560",
"CHEBI:17256",
"CHEBI:14112",
"CHEBI:40535",
"CHEBI:40565",
"CHEBI:39863"
],
"hmdb":[
"HMDB05778",
"HMDB00101",
"HMDB11722"
],
"inchi_key":[
"OLXZPDWKRNYJJZ-RRKCRQDMSA-N"
],
"kegg.compound":[
"C00559"
],
"metanetx.chemical":[
"MNXM625"
],
"sabiork":[
"1874"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00438"
]
}
},
{
"id":"dkmpp_c",
"name":"2,3-diketo-5-methylthio-1-phosphopentane",
"compartment":"c",
"charge":-2,
"formula":"C6H9O6PS",
"notes":{
"original_bigg_ids":[
"dkmpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dkmpp"
],
"biocyc":[
"META:CPD-8999"
],
"chebi":[
"CHEBI:58828",
"CHEBI:50604"
],
"hmdb":[
"HMDB62750",
"HMDB59620",
"HMDB60266"
],
"inchi_key":[
"HKEAOVFNWRDVAJ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C15650"
],
"metanetx.chemical":[
"MNXM162358"
],
"reactome.compound":[
"1237176"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11295"
]
}
},
{
"id":"cpgn_un_p",
"name":"Coprogen unloaded (no Fe(III))",
"compartment":"p",
"charge":-4,
"formula":"C35H52N6O13",
"notes":{
"original_bigg_ids":[
"cpgn_un_p"
]
},
"annotation":{
"bigg.metabolite":[
"cpgn_un"
],
"biocyc":[
"META:CPD0-2262"
],
"metanetx.chemical":[
"MNXM2999"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15438"
]
}
},
{
"id":"damp_c",
"name":"DAMP C10H12N5O6P",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O6P",
"notes":{
"original_bigg_ids":[
"damp_c"
]
},
"annotation":{
"bigg.metabolite":[
"damp"
],
"biocyc":[
"META:DAMP"
],
"chebi":[
"CHEBI:17713",
"CHEBI:40544",
"CHEBI:40607",
"CHEBI:41815",
"CHEBI:40614",
"CHEBI:41870",
"CHEBI:58245",
"CHEBI:41864",
"CHEBI:10490",
"CHEBI:40505",
"CHEBI:40499",
"CHEBI:19236",
"CHEBI:14068",
"CHEBI:40419"
],
"hmdb":[
"HMDB00905"
],
"inchi_key":[
"KHWCHTKSEGGWEX-RRKCRQDMSA-L"
],
"kegg.compound":[
"C00360"
],
"metanetx.chemical":[
"MNXM432"
],
"reactome.compound":[
"500088",
"109386"
],
"sabiork":[
"62"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00294"
]
}
},
{
"id":"cpgn_un_e",
"name":"Coprogen unloaded (no Fe(III))",
"compartment":"e",
"charge":-4,
"formula":"C35H52N6O13",
"notes":{
"original_bigg_ids":[
"cpgn_un_e"
]
},
"annotation":{
"bigg.metabolite":[
"cpgn_un"
],
"biocyc":[
"META:CPD0-2262"
],
"metanetx.chemical":[
"MNXM2999"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15438"
]
}
},
{
"id":"cpgn_p",
"name":"Coprogen",
"compartment":"p",
"charge":-1,
"formula":"C35H52N6O13Fe",
"notes":{
"original_bigg_ids":[
"cpgn_p"
]
},
"annotation":{
"bigg.metabolite":[
"cpgn"
],
"chebi":[
"CHEBI:83101"
],
"inchi_key":[
"FQIVLXIUJLOKPL-DWZMLRRXSA-N"
],
"metanetx.chemical":[
"MNXM114191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15437"
]
}
},
{
"id":"grdp_c",
"name":"Geranyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C10H17O7P2",
"notes":{
"original_bigg_ids":[
"grdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"grdp"
],
"biocyc":[
"META:GERANYL-PP"
],
"chebi":[
"CHEBI:17211",
"CHEBI:24223",
"CHEBI:58057",
"CHEBI:42877",
"CHEBI:14299",
"CHEBI:5332"
],
"hmdb":[
"HMDB01285",
"HMDB02239",
"HMDB06506",
"HMDB01560"
],
"inchi_key":[
"GVVPGTZRZFNKDS-JXMROGBWSA-K"
],
"kegg.compound":[
"C00341"
],
"lipidmaps":[
"LMPR0102010001"
],
"metanetx.chemical":[
"MNXM100"
],
"reactome.compound":[
"191409"
],
"sabiork":[
"5050",
"1846"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00283",
"cpd03476"
]
}
},
{
"id":"dadp_c",
"name":"DADP C10H12N5O9P2",
"compartment":"c",
"charge":-3,
"formula":"C10H12N5O9P2",
"notes":{
"original_bigg_ids":[
"dadp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dadp"
],
"biocyc":[
"META:DADP"
],
"chebi":[
"CHEBI:10489",
"CHEBI:16174",
"CHEBI:57667",
"CHEBI:41890",
"CHEBI:19235",
"CHEBI:14067"
],
"hmdb":[
"HMDB01508"
],
"inchi_key":[
"DAEAPNUQQAICNR-RRKCRQDMSA-K"
],
"kegg.compound":[
"C00206"
],
"metanetx.chemical":[
"MNXM374"
],
"reactome.compound":[
"500087"
],
"sabiork":[
"1314"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00177"
]
}
},
{
"id":"ipdp_c",
"name":"Isopentenyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C5H9O7P2",
"notes":{
"original_bigg_ids":[
"ipdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ipdp"
],
"biocyc":[
"META:DELTA3-ISOPENTENYL-PP"
],
"chebi":[
"CHEBI:128769",
"CHEBI:24907",
"CHEBI:6037",
"CHEBI:14473",
"CHEBI:16584"
],
"hmdb":[
"HMDB01347",
"HMDB04196"
],
"inchi_key":[
"NUHSROFQTUXZQQ-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00129"
],
"lipidmaps":[
"LMPR01010008"
],
"metanetx.chemical":[
"MNXM83"
],
"reactome.compound":[
"191362",
"2162256"
],
"sabiork":[
"5009"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00113"
]
}
},
{
"id":"cpgn_e",
"name":"Coprogen",
"compartment":"e",
"charge":-1,
"formula":"C35H52N6O13Fe",
"notes":{
"original_bigg_ids":[
"cpgn_e"
]
},
"annotation":{
"bigg.metabolite":[
"cpgn"
],
"chebi":[
"CHEBI:83101"
],
"inchi_key":[
"FQIVLXIUJLOKPL-DWZMLRRXSA-N"
],
"metanetx.chemical":[
"MNXM114191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15437"
]
}
},
{
"id":"dad_2_p",
"name":"Deoxyadenosine",
"compartment":"p",
"charge":0,
"formula":"C10H13N5O3",
"notes":{
"original_bigg_ids":[
"dad_2_p"
]
},
"annotation":{
"bigg.metabolite":[
"dad_2"
],
"biocyc":[
"META:DEOXYADENOSINE"
],
"chebi":[
"CHEBI:19234",
"CHEBI:4405",
"CHEBI:40560",
"CHEBI:17256",
"CHEBI:14112",
"CHEBI:40535",
"CHEBI:40565",
"CHEBI:39863"
],
"hmdb":[
"HMDB05778",
"HMDB00101",
"HMDB11722"
],
"inchi_key":[
"OLXZPDWKRNYJJZ-RRKCRQDMSA-N"
],
"kegg.compound":[
"C00559"
],
"metanetx.chemical":[
"MNXM625"
],
"sabiork":[
"1874"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00438"
]
}
},
{
"id":"pppg9_c",
"name":"Protoporphyrinogen IX",
"compartment":"c",
"charge":-2,
"formula":"C34H38N4O4",
"notes":{
"original_bigg_ids":[
"pppg9_c"
]
},
"annotation":{
"bigg.metabolite":[
"pppg9"
],
"biocyc":[
"META:PROTOPORPHYRINOGEN"
],
"chebi":[
"CHEBI:57307",
"CHEBI:26360",
"CHEBI:26359",
"CHEBI:15435",
"CHEBI:8593",
"CHEBI:14962"
],
"hmdb":[
"HMDB01097"
],
"inchi_key":[
"UHSGPDMIQQYNAX-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01079"
],
"metanetx.chemical":[
"MNXM351"
],
"reactome.compound":[
"189478"
],
"sabiork":[
"5384"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00791"
]
}
},
{
"id":"dmpp_c",
"name":"Dimethylallyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C5H9O7P2",
"notes":{
"original_bigg_ids":[
"dmpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dmpp"
],
"biocyc":[
"META:CPD-4211"
],
"chebi":[
"CHEBI:14883",
"CHEBI:57623",
"CHEBI:8394",
"CHEBI:12280",
"CHEBI:4616",
"CHEBI:23803",
"CHEBI:16057",
"CHEBI:26245",
"CHEBI:341937",
"CHEBI:14169",
"CHEBI:42074",
"CHEBI:18108"
],
"hmdb":[
"HMDB02101",
"HMDB01120"
],
"inchi_key":[
"CBIDRCWHNCKSTO-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00235"
],
"lipidmaps":[
"LMPR01010001"
],
"metanetx.chemical":[
"MNXM132"
],
"reactome.compound":[
"1132235",
"6787596",
"191324"
],
"sabiork":[
"1986"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00202"
]
}
},
{
"id":"dad_2_e",
"name":"Deoxyadenosine",
"compartment":"e",
"charge":0,
"formula":"C10H13N5O3",
"notes":{
"original_bigg_ids":[
"dad_2_e"
]
},
"annotation":{
"bigg.metabolite":[
"dad_2"
],
"biocyc":[
"META:DEOXYADENOSINE"
],
"chebi":[
"CHEBI:19234",
"CHEBI:4405",
"CHEBI:40560",
"CHEBI:17256",
"CHEBI:14112",
"CHEBI:40535",
"CHEBI:40565",
"CHEBI:39863"
],
"hmdb":[
"HMDB05778",
"HMDB00101",
"HMDB11722"
],
"inchi_key":[
"OLXZPDWKRNYJJZ-RRKCRQDMSA-N"
],
"kegg.compound":[
"C00559"
],
"metanetx.chemical":[
"MNXM625"
],
"sabiork":[
"1874"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00438"
]
}
},
{
"id":"h2mb4p_c",
"name":"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C5H9O8P2",
"notes":{
"original_bigg_ids":[
"h2mb4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2mb4p"
],
"biocyc":[
"META:HYDROXY-METHYL-BUTENYL-DIP"
],
"chebi":[
"CHEBI:10952",
"CHEBI:128753",
"CHEBI:15664",
"CHEBI:632"
],
"inchi_key":[
"MDSIZRKJVDMQOQ-GORDUTHDSA-K"
],
"kegg.compound":[
"C11811"
],
"lipidmaps":[
"LMPR01010009"
],
"metanetx.chemical":[
"MNXM606"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08615",
"cpd29213"
]
}
},
{
"id":"cpppg3_c",
"name":"Coproporphyrinogen III",
"compartment":"c",
"charge":-4,
"formula":"C36H40N4O8",
"notes":{
"original_bigg_ids":[
"cpppg3_c"
]
},
"annotation":{
"bigg.metabolite":[
"cpppg3"
],
"biocyc":[
"META:COPROPORPHYRINOGEN_III"
],
"chebi":[
"CHEBI:15439",
"CHEBI:3880",
"CHEBI:57309",
"CHEBI:41560",
"CHEBI:23386",
"CHEBI:14020"
],
"hmdb":[
"HMDB01261"
],
"inchi_key":[
"NIUVHXTXUXOFEB-UHFFFAOYSA-J"
],
"kegg.compound":[
"C03263"
],
"metanetx.chemical":[
"MNXM410"
],
"reactome.compound":[
"189455",
"189411"
],
"sabiork":[
"8129",
"6515"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02083"
]
}
},
{
"id":"ala__D_e",
"name":"D-Alanine",
"compartment":"e",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"ala_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"ala__D"
],
"biocyc":[
"META:D-ALANINE"
],
"chebi":[
"CHEBI:12899",
"CHEBI:57416",
"CHEBI:41798",
"CHEBI:10840",
"CHEBI:20893",
"CHEBI:4087",
"CHEBI:32435",
"CHEBI:41848",
"CHEBI:41756",
"CHEBI:41877",
"CHEBI:15570",
"CHEBI:32436"
],
"hmdb":[
"HMDB01310"
],
"inchi_key":[
"QNAYBMKLOCPYGJ-UWTATZPHSA-N"
],
"kegg.compound":[
"C00133"
],
"metanetx.chemical":[
"MNXM156"
],
"sabiork":[
"1940"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00117"
]
}
},
{
"id":"crn_c",
"name":"L-Carnitine",
"compartment":"c",
"charge":0,
"formula":"C7H15NO3",
"notes":{
"original_bigg_ids":[
"crn_c"
]
},
"annotation":{
"bigg.metabolite":[
"crn"
],
"biocyc":[
"META:CARNITINE"
],
"chebi":[
"CHEBI:29085",
"CHEBI:11817",
"CHEBI:6202",
"CHEBI:21256",
"CHEBI:16347",
"CHEBI:23038",
"CHEBI:13947",
"CHEBI:17126",
"CHEBI:39547",
"CHEBI:20047",
"CHEBI:3424",
"CHEBI:13091"
],
"hmdb":[
"HMDB62496",
"HMDB00062",
"HMDB01467"
],
"inchi_key":[
"PHIQHXFUZVPYII-ZCFIWIBFSA-N"
],
"kegg.compound":[
"C00487",
"C00318"
],
"kegg.drug":[
"D02176"
],
"metanetx.chemical":[
"MNXM173"
],
"reactome.compound":[
"201023",
"549207",
"164988",
"390294",
"30235"
],
"sabiork":[
"3872",
"1328"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19003",
"cpd00266"
]
}
},
{
"id":"2omhmbl_c",
"name":"2-Octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol",
"compartment":"c",
"charge":0,
"formula":"C48H74O4",
"notes":{
"original_bigg_ids":[
"2omhmbl_c"
]
},
"annotation":{
"bigg.metabolite":[
"2omhmbl"
],
"biocyc":[
"META:OCTAPRENYL-METHYL-OH-METHOXY-BENZQ"
],
"chebi":[
"CHEBI:61705",
"CHEBI:19728",
"CHEBI:27688",
"CHEBI:1231"
],
"inchi_key":[
"QURLIMHPCRKMJP-WDXILIIOSA-N"
],
"metanetx.chemical":[
"MNXM2187"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15360"
]
}
},
{
"id":"damp_e",
"name":"DAMP C10H12N5O6P",
"compartment":"e",
"charge":-2,
"formula":"C10H12N5O6P",
"notes":{
"original_bigg_ids":[
"damp_e"
]
},
"annotation":{
"bigg.metabolite":[
"damp"
],
"biocyc":[
"META:DAMP"
],
"chebi":[
"CHEBI:17713",
"CHEBI:40544",
"CHEBI:40607",
"CHEBI:41815",
"CHEBI:40614",
"CHEBI:41870",
"CHEBI:58245",
"CHEBI:41864",
"CHEBI:10490",
"CHEBI:40505",
"CHEBI:40499",
"CHEBI:19236",
"CHEBI:14068",
"CHEBI:40419"
],
"hmdb":[
"HMDB00905"
],
"inchi_key":[
"KHWCHTKSEGGWEX-RRKCRQDMSA-L"
],
"kegg.compound":[
"C00360"
],
"metanetx.chemical":[
"MNXM432"
],
"reactome.compound":[
"500088",
"109386"
],
"sabiork":[
"62"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00294"
]
}
},
{
"id":"dmso_e",
"name":"Dimethyl sulfoxide",
"compartment":"e",
"charge":0,
"formula":"C2H6OS",
"notes":{
"original_bigg_ids":[
"dmso_e"
]
},
"annotation":{
"bigg.metabolite":[
"dmso"
],
"biocyc":[
"META:DMSO"
],
"chebi":[
"CHEBI:23801",
"CHEBI:4612",
"CHEBI:42138",
"CHEBI:28262"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/455cdb68-acf9-42fe-a3f8-420236744cc5"
],
"hmdb":[
"HMDB02151"
],
"inchi_key":[
"IAZDPXIOMUYVGZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C11143"
],
"kegg.drug":[
"D01043"
],
"metanetx.chemical":[
"MNXM745"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08021"
]
}
},
{
"id":"bbtcoa_c",
"name":"Gamma-butyrobetainyl-CoA",
"compartment":"c",
"charge":-3,
"formula":"C28H46N8O17P3S",
"notes":{
"original_bigg_ids":[
"bbtcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"bbtcoa"
],
"biocyc":[
"META:GAMMA-BUTYROBETAINYL-COA"
],
"chebi":[
"CHEBI:61513",
"CHEBI:61517"
],
"inchi_key":[
"QAMRRBGWSPTAEJ-SVHODSNWSA-K"
],
"kegg.compound":[
"C20749"
],
"lipidmaps":[
"LMFA07050321"
],
"metanetx.chemical":[
"MNXM5762"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15412"
]
}
},
{
"id":"damp_p",
"name":"DAMP C10H12N5O6P",
"compartment":"p",
"charge":-2,
"formula":"C10H12N5O6P",
"notes":{
"original_bigg_ids":[
"damp_p"
]
},
"annotation":{
"bigg.metabolite":[
"damp"
],
"biocyc":[
"META:DAMP"
],
"chebi":[
"CHEBI:17713",
"CHEBI:40544",
"CHEBI:40607",
"CHEBI:41815",
"CHEBI:40614",
"CHEBI:41870",
"CHEBI:58245",
"CHEBI:41864",
"CHEBI:10490",
"CHEBI:40505",
"CHEBI:40499",
"CHEBI:19236",
"CHEBI:14068",
"CHEBI:40419"
],
"hmdb":[
"HMDB00905"
],
"inchi_key":[
"KHWCHTKSEGGWEX-RRKCRQDMSA-L"
],
"kegg.compound":[
"C00360"
],
"metanetx.chemical":[
"MNXM432"
],
"reactome.compound":[
"500088",
"109386"
],
"sabiork":[
"62"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00294"
]
}
},
{
"id":"gbbtn_c",
"name":"Gamma-butyrobetaine",
"compartment":"c",
"charge":0,
"formula":"C7H15NO2",
"notes":{
"original_bigg_ids":[
"gbbtn_c"
]
},
"annotation":{
"bigg.metabolite":[
"gbbtn"
],
"biocyc":[
"META:GAMMA-BUTYROBETAINE"
],
"chebi":[
"CHEBI:1941",
"CHEBI:20484",
"CHEBI:12047",
"CHEBI:16244"
],
"hmdb":[
"HMDB01161",
"HMDB06831"
],
"inchi_key":[
"JHPNVNIEXXLNTR-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01181"
],
"metanetx.chemical":[
"MNXM626"
],
"reactome.compound":[
"31369"
],
"sabiork":[
"5425"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00870"
]
}
},
{
"id":"dmso_p",
"name":"Dimethyl sulfoxide",
"compartment":"p",
"charge":0,
"formula":"C2H6OS",
"notes":{
"original_bigg_ids":[
"dmso_p"
]
},
"annotation":{
"bigg.metabolite":[
"dmso"
],
"biocyc":[
"META:DMSO"
],
"chebi":[
"CHEBI:23801",
"CHEBI:4612",
"CHEBI:42138",
"CHEBI:28262"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/455cdb68-acf9-42fe-a3f8-420236744cc5"
],
"hmdb":[
"HMDB02151"
],
"inchi_key":[
"IAZDPXIOMUYVGZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C11143"
],
"kegg.drug":[
"D01043"
],
"metanetx.chemical":[
"MNXM745"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08021"
]
}
},
{
"id":"26dap__M_c",
"name":"Meso-2,6-Diaminoheptanedioate",
"compartment":"c",
"charge":0,
"formula":"C7H14N2O4",
"notes":{
"original_bigg_ids":[
"26dap_M_c"
]
},
"annotation":{
"bigg.metabolite":[
"26dap__M"
],
"biocyc":[
"META:MESO-DIAMINOPIMELATE"
],
"chebi":[
"CHEBI:40838",
"CHEBI:12823",
"CHEBI:30308",
"CHEBI:57791",
"CHEBI:10598",
"CHEBI:25203",
"CHEBI:12825",
"CHEBI:12822",
"CHEBI:25204",
"CHEBI:16488"
],
"inchi_key":[
"GMKMEZVLHJARHF-SYDPRGILSA-N"
],
"kegg.compound":[
"C00680"
],
"metanetx.chemical":[
"MNXM529"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00516"
]
}
},
{
"id":"dms_p",
"name":"Dimethyl sulfide",
"compartment":"p",
"charge":0,
"formula":"C2H6S",
"notes":{
"original_bigg_ids":[
"dms_p"
]
},
"annotation":{
"bigg.metabolite":[
"dms"
],
"biocyc":[
"META:CPD-7670"
],
"chebi":[
"CHEBI:17437",
"CHEBI:44169",
"CHEBI:4611",
"CHEBI:23800",
"CHEBI:14175",
"CHEBI:14168"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/26c081a5-2c2d-4e64-bd11-0d80376989ba"
],
"hmdb":[
"HMDB02303"
],
"inchi_key":[
"QMMFVYPAHWMCMS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00580"
],
"metanetx.chemical":[
"MNXM444"
],
"sabiork":[
"2104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00450"
]
}
},
{
"id":"dms_e",
"name":"Dimethyl sulfide",
"compartment":"e",
"charge":0,
"formula":"C2H6S",
"notes":{
"original_bigg_ids":[
"dms_e"
]
},
"annotation":{
"bigg.metabolite":[
"dms"
],
"biocyc":[
"META:CPD-7670"
],
"chebi":[
"CHEBI:17437",
"CHEBI:44169",
"CHEBI:4611",
"CHEBI:23800",
"CHEBI:14175",
"CHEBI:14168"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/26c081a5-2c2d-4e64-bd11-0d80376989ba"
],
"hmdb":[
"HMDB02303"
],
"inchi_key":[
"QMMFVYPAHWMCMS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00580"
],
"metanetx.chemical":[
"MNXM444"
],
"sabiork":[
"2104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00450"
]
}
},
{
"id":"crncoa_c",
"name":"L-Carnitinyl-CoA",
"compartment":"c",
"charge":-3,
"formula":"C28H46N8O18P3S",
"notes":{
"original_bigg_ids":[
"crncoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"crncoa"
],
"biocyc":[
"META:L-CARNITINYL-COA"
],
"chebi":[
"CHEBI:41482",
"CHEBI:60932"
],
"inchi_key":[
"BBRISSLDTUHWKG-PVMHLSDZSA-K"
],
"kegg.compound":[
"C20750"
],
"lipidmaps":[
"LMFA07050150"
],
"metanetx.chemical":[
"MNXM1451"
],
"sbo":"SBO:0000247"
}
},
{
"id":"26dap_LL_c",
"name":"LL-2,6-Diaminoheptanedioate",
"compartment":"c",
"charge":0,
"formula":"C7H14N2O4",
"notes":{
"original_bigg_ids":[
"26dap_LL_c"
]
},
"annotation":{
"bigg.metabolite":[
"26dap_LL"
],
"biocyc":[
"META:LL-DIAMINOPIMELATE"
],
"chebi":[
"CHEBI:21428",
"CHEBI:6341",
"CHEBI:21429",
"CHEBI:16026",
"CHEBI:57609",
"CHEBI:13192",
"CHEBI:47031"
],
"hmdb":[
"HMDB01370"
],
"inchi_key":[
"GMKMEZVLHJARHF-WHFBIAKZSA-N"
],
"kegg.compound":[
"C00666"
],
"lipidmaps":[
"LMFA01170102"
],
"metanetx.chemical":[
"MNXM644"
],
"sabiork":[
"5171"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00504"
]
}
},
{
"id":"crnDcoa_c",
"name":"D-carnitinyl-CoA",
"compartment":"c",
"charge":-3,
"formula":"C28H46N8O18P3S",
"notes":{
"original_bigg_ids":[
"crnDcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"crnDcoa"
],
"biocyc":[
"META:D-CARNITINYL-COA"
],
"chebi":[
"CHEBI:62194",
"CHEBI:62047"
],
"inchi_key":[
"BBRISSLDTUHWKG-ZORKKWTOSA-K"
],
"lipidmaps":[
"LMFA07050162"
],
"metanetx.chemical":[
"MNXM3411"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15439"
]
}
},
{
"id":"ctbt_c",
"name":"Crotonobetaine",
"compartment":"c",
"charge":0,
"formula":"C7H13NO2",
"notes":{
"original_bigg_ids":[
"ctbt_c"
]
},
"annotation":{
"bigg.metabolite":[
"ctbt"
],
"biocyc":[
"META:CROTONO-BETAINE"
],
"chebi":[
"CHEBI:48867",
"CHEBI:17237",
"CHEBI:20299",
"CHEBI:1774",
"CHEBI:11946"
],
"inchi_key":[
"GUYHPGUANSLONG-SNAWJCMRSA-N"
],
"kegg.compound":[
"C04114"
],
"metanetx.chemical":[
"MNXM1607"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02543"
]
}
},
{
"id":"ctbtcoa_c",
"name":"Crotonobetainyl-CoA",
"compartment":"c",
"charge":-3,
"formula":"C28H44N8O17P3S",
"notes":{
"original_bigg_ids":[
"ctbtcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ctbtcoa"
],
"biocyc":[
"META:CROTONOBETAINYL-COA"
],
"chebi":[
"CHEBI:60933",
"CHEBI:61123"
],
"inchi_key":[
"WAUPBDVHJXXZGW-HXPULJKESA-K"
],
"kegg.compound":[
"C20748"
],
"lipidmaps":[
"LMFA07050306",
"LMFA07050143"
],
"metanetx.chemical":[
"MNXM2363"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15441"
]
}
},
{
"id":"4hba_c",
"name":"4-Hydroxy-benzyl alcohol",
"compartment":"c",
"charge":0,
"formula":"C7H8O2",
"notes":{
"original_bigg_ids":[
"4hba_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hba"
],
"biocyc":[
"META:4-HYDROXY-BENZYL-ALCOHOL"
],
"chebi":[
"CHEBI:67410"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/5fccc743-f94b-40f9-9c78-5f38cf50d217"
],
"hmdb":[
"HMDB11724"
],
"inchi_key":[
"BVJSUAQZOZWCKN-UHFFFAOYSA-N"
],
"kegg.compound":[
"C17467"
],
"metanetx.chemical":[
"MNXM107505"
],
"sabiork":[
"26558"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd17595",
"cpd15378"
]
}
},
{
"id":"oxam_c",
"name":"Oxamate",
"compartment":"c",
"charge":-1,
"formula":"C2H2NO3",
"notes":{
"original_bigg_ids":[
"oxam_c"
]
},
"annotation":{
"bigg.metabolite":[
"oxam"
],
"biocyc":[
"META:OXAMATE"
],
"chebi":[
"CHEBI:7818",
"CHEBI:25740",
"CHEBI:44589",
"CHEBI:14708",
"CHEBI:18058",
"CHEBI:58363"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/39b30a97-8fc7-4a71-be89-c591d56a8f6a"
],
"inchi_key":[
"SOWBFZRMHSNYGE-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01444"
],
"metanetx.chemical":[
"MNXM3329"
],
"sabiork":[
"3029"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01027"
]
}
},
{
"id":"15dap_e",
"name":"1,5-Diaminopentane",
"compartment":"e",
"charge":2,
"formula":"C5H16N2",
"notes":{
"original_bigg_ids":[
"15dap_e"
]
},
"annotation":{
"bigg.metabolite":[
"15dap"
],
"biocyc":[
"META:CADAVERINE"
],
"chebi":[
"CHEBI:58384",
"CHEBI:22974",
"CHEBI:18127",
"CHEBI:13928",
"CHEBI:3288",
"CHEBI:44370"
],
"hmdb":[
"HMDB02322"
],
"inchi_key":[
"VHRGRCVQAFMJIZ-UHFFFAOYSA-P"
],
"kegg.compound":[
"C01672"
],
"metanetx.chemical":[
"MNXM943"
],
"sabiork":[
"3091"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01155"
]
}
},
{
"id":"dhpmp_c",
"name":"Dihydroneopterin monophosphate",
"compartment":"c",
"charge":-2,
"formula":"C9H12N5O7P",
"notes":{
"original_bigg_ids":[
"dhpmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhpmp"
],
"biocyc":[
"META:DIHYDRONEOPTERIN-P"
],
"chebi":[
"CHEBI:48954",
"CHEBI:58762",
"CHEBI:4577",
"CHEBI:23756"
],
"hmdb":[
"HMDB06824"
],
"inchi_key":[
"PLSQMGZYOGSOCE-XINAWCOVSA-L"
],
"kegg.compound":[
"C05925"
],
"metanetx.chemical":[
"MNXM1645"
],
"sabiork":[
"8272"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03521",
"cpd29676"
]
}
},
{
"id":"ahdt_c",
"name":"2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)dihydropteridine triphosphate",
"compartment":"c",
"charge":-4,
"formula":"C9H12N5O13P3",
"notes":{
"original_bigg_ids":[
"ahdt_c"
]
},
"annotation":{
"bigg.metabolite":[
"ahdt"
],
"biocyc":[
"META:DIHYDRONEOPTERIN-P3"
],
"chebi":[
"CHEBI:19455",
"CHEBI:18372",
"CHEBI:20684",
"CHEBI:28069",
"CHEBI:58462",
"CHEBI:1002",
"CHEBI:11509",
"CHEBI:12201"
],
"hmdb":[
"HMDB12181",
"HMDB01144",
"HMDB00980"
],
"inchi_key":[
"DGGUVLXVLHAAGT-XINAWCOVSA-J"
],
"kegg.compound":[
"C04895"
],
"metanetx.chemical":[
"MNXM397"
],
"reactome.compound":[
"1474124"
],
"sabiork":[
"7657",
"25345"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02978"
]
}
},
{
"id":"crn__D_c",
"name":"D-Carnitine",
"compartment":"c",
"charge":0,
"formula":"C7H15NO3",
"notes":{
"original_bigg_ids":[
"crn_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"crn__D"
],
"biocyc":[
"META:D-CARNITINE"
],
"chebi":[
"CHEBI:51453",
"CHEBI:11060"
],
"hmdb":[
"HMDB62634"
],
"inchi_key":[
"PHIQHXFUZVPYII-LURJTMIESA-N"
],
"kegg.compound":[
"C15025"
],
"metanetx.chemical":[
"MNXM246"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10719"
]
}
},
{
"id":"crn__D_p",
"name":"D-Carnitine",
"compartment":"p",
"charge":0,
"formula":"C7H15NO3",
"notes":{
"original_bigg_ids":[
"crn_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"crn__D"
],
"biocyc":[
"META:D-CARNITINE"
],
"chebi":[
"CHEBI:51453",
"CHEBI:11060"
],
"hmdb":[
"HMDB62634"
],
"inchi_key":[
"PHIQHXFUZVPYII-LURJTMIESA-N"
],
"kegg.compound":[
"C15025"
],
"metanetx.chemical":[
"MNXM246"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10719"
]
}
},
{
"id":"datp_c",
"name":"DATP C10H12N5O12P3",
"compartment":"c",
"charge":-4,
"formula":"C10H12N5O12P3",
"notes":{
"original_bigg_ids":[
"datp_c"
]
},
"annotation":{
"bigg.metabolite":[
"datp"
],
"biocyc":[
"META:DATP"
],
"chebi":[
"CHEBI:495505",
"CHEBI:19238",
"CHEBI:42290",
"CHEBI:10491",
"CHEBI:61404",
"CHEBI:16284",
"CHEBI:14069"
],
"hmdb":[
"HMDB01532"
],
"inchi_key":[
"SUYVUBYJARFZHO-RRKCRQDMSA-J"
],
"kegg.compound":[
"C00131"
],
"metanetx.chemical":[
"MNXM286"
],
"reactome.compound":[
"110644"
],
"sabiork":[
"1307"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00115"
]
}
},
{
"id":"crn_p",
"name":"L-Carnitine",
"compartment":"p",
"charge":0,
"formula":"C7H15NO3",
"notes":{
"original_bigg_ids":[
"crn_p"
]
},
"annotation":{
"bigg.metabolite":[
"crn"
],
"biocyc":[
"META:CARNITINE"
],
"chebi":[
"CHEBI:29085",
"CHEBI:11817",
"CHEBI:6202",
"CHEBI:21256",
"CHEBI:16347",
"CHEBI:23038",
"CHEBI:13947",
"CHEBI:17126",
"CHEBI:39547",
"CHEBI:20047",
"CHEBI:3424",
"CHEBI:13091"
],
"hmdb":[
"HMDB62496",
"HMDB00062",
"HMDB01467"
],
"inchi_key":[
"PHIQHXFUZVPYII-ZCFIWIBFSA-N"
],
"kegg.compound":[
"C00487",
"C00318"
],
"kegg.drug":[
"D02176"
],
"metanetx.chemical":[
"MNXM173"
],
"reactome.compound":[
"201023",
"549207",
"164988",
"390294",
"30235"
],
"sabiork":[
"3872",
"1328"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19003",
"cpd00266"
]
}
},
{
"id":"23doguln_c",
"name":"2,3-Dioxo-L-gulonate",
"compartment":"c",
"charge":-1,
"formula":"C6H7O7",
"notes":{
"original_bigg_ids":[
"23doguln_c"
]
},
"annotation":{
"bigg.metabolite":[
"23doguln"
],
"biocyc":[
"META:CPD-19692",
"META:CPD-334"
],
"chebi":[
"CHEBI:57441",
"CHEBI:10900",
"CHEBI:226",
"CHEBI:18578",
"CHEBI:15622",
"CHEBI:60793"
],
"hmdb":[
"HMDB06511",
"HMDB62803",
"HMDB05971"
],
"inchi_key":[
"GJQWCDSAOUMKSE-STHAYSLISA-M"
],
"kegg.compound":[
"C04575"
],
"lipidmaps":[
"LMFA01060195"
],
"metanetx.chemical":[
"MNXM958"
],
"sabiork":[
"25315"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02784"
]
}
},
{
"id":"ditp_c",
"name":"DITP(4-)",
"compartment":"c",
"charge":-4,
"formula":"C10H11N4O13P3",
"notes":{
"original_bigg_ids":[
"ditp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ditp"
],
"biocyc":[
"META:DITP"
],
"chebi":[
"CHEBI:19251",
"CHEBI:28807",
"CHEBI:61382",
"CHEBI:10499"
],
"inchi_key":[
"UFJPAQSLHAGEBL-RRKCRQDMSA-J"
],
"kegg.compound":[
"C01345"
],
"metanetx.chemical":[
"MNXM1325"
],
"reactome.compound":[
"2509835"
],
"sabiork":[
"1713"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00977"
]
}
},
{
"id":"dopa_p",
"name":"Dopamine",
"compartment":"p",
"charge":1,
"formula":"C8H12NO2",
"notes":{
"original_bigg_ids":[
"dopa_p"
]
},
"annotation":{
"bigg.metabolite":[
"dopa"
],
"biocyc":[
"META:DOPAMINE"
],
"chebi":[
"CHEBI:11695",
"CHEBI:11930",
"CHEBI:14203",
"CHEBI:1764",
"CHEBI:23886",
"CHEBI:43686",
"CHEBI:18243",
"CHEBI:59905"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/47cc810c-1f1f-4351-82ca-b97abf5dc03c"
],
"hmdb":[
"HMDB00073"
],
"inchi_key":[
"VYFYYTLLBUKUHU-UHFFFAOYSA-O"
],
"kegg.compound":[
"C03758"
],
"kegg.drug":[
"D07870"
],
"metanetx.chemical":[
"MNXM205"
],
"reactome.compound":[
"351601",
"380873",
"159362"
],
"sabiork":[
"20037",
"6836"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02357"
]
}
},
{
"id":"db4p_c",
"name":"3,4-dihydroxy-2-butanone 4-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C4H7O6P",
"notes":{
"original_bigg_ids":[
"db4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"db4p"
],
"chebi":[
"CHEBI:50606"
],
"inchi_key":[
"OKYHYXLCTGGOLM-UHFFFAOYSA-L"
],
"kegg.compound":[
"C15556"
],
"metanetx.chemical":[
"MNXM2323"
],
"sabiork":[
"23254"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11225"
]
}
},
{
"id":"dopa_e",
"name":"Dopamine",
"compartment":"e",
"charge":1,
"formula":"C8H12NO2",
"notes":{
"original_bigg_ids":[
"dopa_e"
]
},
"annotation":{
"bigg.metabolite":[
"dopa"
],
"biocyc":[
"META:DOPAMINE"
],
"chebi":[
"CHEBI:11695",
"CHEBI:11930",
"CHEBI:14203",
"CHEBI:1764",
"CHEBI:23886",
"CHEBI:43686",
"CHEBI:18243",
"CHEBI:59905"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/47cc810c-1f1f-4351-82ca-b97abf5dc03c"
],
"hmdb":[
"HMDB00073"
],
"inchi_key":[
"VYFYYTLLBUKUHU-UHFFFAOYSA-O"
],
"kegg.compound":[
"C03758"
],
"kegg.drug":[
"D07870"
],
"metanetx.chemical":[
"MNXM205"
],
"reactome.compound":[
"351601",
"380873",
"159362"
],
"sabiork":[
"20037",
"6836"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02357"
]
}
},
{
"id":"dca_e",
"name":"Decanoate (n-C10:0)",
"compartment":"e",
"charge":-1,
"formula":"C10H19O2",
"notes":{
"original_bigg_ids":[
"dca_e"
]
},
"annotation":{
"bigg.metabolite":[
"dca"
],
"metanetx.chemical":[
"MNXM162295"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dpcoa_c",
"name":"Dephospho-CoA",
"compartment":"c",
"charge":-2,
"formula":"C21H33N7O13P2S",
"notes":{
"original_bigg_ids":[
"dpcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"dpcoa"
],
"biocyc":[
"META:DEPHOSPHO-COA"
],
"chebi":[
"CHEBI:14124",
"CHEBI:41614",
"CHEBI:23642",
"CHEBI:15468",
"CHEBI:11793",
"CHEBI:57328",
"CHEBI:4436"
],
"hmdb":[
"HMDB01373"
],
"inchi_key":[
"KDTSHFARGAKYJN-IBOSZNHHSA-L"
],
"kegg.compound":[
"C00882"
],
"lipidmaps":[
"LMFA07050315"
],
"metanetx.chemical":[
"MNXM481"
],
"reactome.compound":[
"196778"
],
"sabiork":[
"27337",
"1400"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00655"
]
}
},
{
"id":"3hbcoa_c",
"name":"(S)-3-Hydroxybutanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H38N7O18P3S",
"notes":{
"original_bigg_ids":[
"3hbcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hbcoa"
],
"biocyc":[
"META:S-3-HYDROXYBUTANOYL-COA"
],
"chebi":[
"CHEBI:18749",
"CHEBI:394",
"CHEBI:15453",
"CHEBI:11048",
"CHEBI:39978",
"CHEBI:57316"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/52913599-1749-4913-8cc4-b6c15d72ad5e"
],
"hmdb":[
"HMDB62259"
],
"inchi_key":[
"QHHKKMYHDBRONY-VKBDFPRVSA-J"
],
"kegg.compound":[
"C01144"
],
"lipidmaps":[
"LMFA07050153"
],
"metanetx.chemical":[
"MNXM446"
],
"reactome.compound":[
"77251"
],
"sabiork":[
"2254"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00842"
],
"slm":[
"000001032"
]
}
},
{
"id":"dca_p",
"name":"Decanoate (n-C10:0)",
"compartment":"p",
"charge":-1,
"formula":"C10H19O2",
"notes":{
"original_bigg_ids":[
"dca_p"
]
},
"annotation":{
"bigg.metabolite":[
"dca"
],
"metanetx.chemical":[
"MNXM162295"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3hhcoa_c",
"name":"(S)-3-Hydroxyhexanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C27H42N7O18P3S",
"notes":{
"original_bigg_ids":[
"3hhcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hhcoa"
],
"biocyc":[
"META:OH-HEXANOYL-COA"
],
"chebi":[
"CHEBI:62075",
"CHEBI:419",
"CHEBI:18780",
"CHEBI:28276"
],
"hmdb":[
"HMDB03942",
"HMDB62262"
],
"inchi_key":[
"VAAHKRMGOFIORX-IKTBLOROSA-J"
],
"kegg.compound":[
"C05268"
],
"lipidmaps":[
"LMFA07050156",
"LMFA07050017"
],
"metanetx.chemical":[
"MNXM757"
],
"reactome.compound":[
"77322"
],
"sabiork":[
"2745"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03122"
],
"slm":[
"000001030"
]
}
},
{
"id":"2dr5p_c",
"name":"2-Deoxy-D-ribose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O7P",
"notes":{
"original_bigg_ids":[
"2dr5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dr5p"
],
"biocyc":[
"META:DEOXY-RIBOSE-5P"
],
"chebi":[
"CHEBI:40516",
"CHEBI:16132",
"CHEBI:40921",
"CHEBI:55513",
"CHEBI:57651",
"CHEBI:19559",
"CHEBI:40923",
"CHEBI:62877",
"CHEBI:11566",
"CHEBI:1082",
"CHEBI:42055"
],
"hmdb":[
"HMDB01031"
],
"inchi_key":[
"ALQNUOMIEBHXQG-CRCLSJGQSA-L"
],
"kegg.compound":[
"C00673"
],
"metanetx.chemical":[
"MNXM2179"
],
"reactome.compound":[
"6787328"
],
"sabiork":[
"1346"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26846",
"cpd00510"
]
}
},
{
"id":"dcmp_e",
"name":"DCMP C9H12N3O7P",
"compartment":"e",
"charge":-2,
"formula":"C9H12N3O7P",
"notes":{
"original_bigg_ids":[
"dcmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"dcmp"
],
"biocyc":[
"META:DCMP"
],
"chebi":[
"CHEBI:15918",
"CHEBI:10493",
"CHEBI:41838",
"CHEBI:19242",
"CHEBI:14115",
"CHEBI:41875",
"CHEBI:14071",
"CHEBI:41881",
"CHEBI:57566",
"CHEBI:14070"
],
"hmdb":[
"HMDB01202"
],
"inchi_key":[
"NCMVOABPESMRCP-SHYZEUOFSA-L"
],
"kegg.compound":[
"C00239"
],
"metanetx.chemical":[
"MNXM266"
],
"reactome.compound":[
"109378",
"500828"
],
"sabiork":[
"63"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00206"
]
}
},
{
"id":"g3p_c",
"name":"Glyceraldehyde 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C3H5O6P",
"notes":{
"original_bigg_ids":[
"g3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"g3p"
],
"biocyc":[
"META:GAP"
],
"chebi":[
"CHEBI:5446",
"CHEBI:14333",
"CHEBI:12984",
"CHEBI:181",
"CHEBI:17138",
"CHEBI:21026",
"CHEBI:12983",
"CHEBI:18324",
"CHEBI:58027",
"CHEBI:59776",
"CHEBI:29052"
],
"hmdb":[
"HMDB01112"
],
"inchi_key":[
"LXJXRIRHZLFYRP-VKHMYHEASA-L"
],
"kegg.compound":[
"C00661",
"C00118"
],
"metanetx.chemical":[
"MNXM74"
],
"reactome.compound":[
"29578"
],
"sabiork":[
"27",
"1687"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00102",
"cpd19005"
]
}
},
{
"id":"3hocoa_c",
"name":"(S)-3-Hydroxyoctanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C29H46N7O18P3S",
"notes":{
"original_bigg_ids":[
"3hocoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hocoa"
],
"chebi":[
"CHEBI:395",
"CHEBI:18750",
"CHEBI:420",
"CHEBI:62617",
"CHEBI:27800",
"CHEBI:28632",
"CHEBI:18781"
],
"hmdb":[
"HMDB03940"
],
"inchi_key":[
"ATVGTMKWKDUCMS-OTOYJEMWSA-J"
],
"kegg.compound":[
"C05266"
],
"lipidmaps":[
"LMFA07050015",
"LMFA07050160"
],
"metanetx.chemical":[
"MNXM766"
],
"reactome.compound":[
"77330"
],
"sabiork":[
"2743"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03120"
],
"slm":[
"000001025"
]
}
},
{
"id":"dcmp_p",
"name":"DCMP C9H12N3O7P",
"compartment":"p",
"charge":-2,
"formula":"C9H12N3O7P",
"notes":{
"original_bigg_ids":[
"dcmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"dcmp"
],
"biocyc":[
"META:DCMP"
],
"chebi":[
"CHEBI:15918",
"CHEBI:10493",
"CHEBI:41838",
"CHEBI:19242",
"CHEBI:14115",
"CHEBI:41875",
"CHEBI:14071",
"CHEBI:41881",
"CHEBI:57566",
"CHEBI:14070"
],
"hmdb":[
"HMDB01202"
],
"inchi_key":[
"NCMVOABPESMRCP-SHYZEUOFSA-L"
],
"kegg.compound":[
"C00239"
],
"metanetx.chemical":[
"MNXM266"
],
"reactome.compound":[
"109378",
"500828"
],
"sabiork":[
"63"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00206"
]
}
},
{
"id":"3hdcoa_c",
"name":"(S)-3-Hydroxydecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C31H50N7O18P3S",
"notes":{
"original_bigg_ids":[
"3hdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hdcoa"
],
"biocyc":[
"META:CPD0-2244"
],
"chebi":[
"CHEBI:62616",
"CHEBI:28325",
"CHEBI:418",
"CHEBI:18779"
],
"hmdb":[
"HMDB03938"
],
"inchi_key":[
"HIVSMYZAMUNFKZ-PNPVFPMQSA-J"
],
"kegg.compound":[
"C05264"
],
"lipidmaps":[
"LMFA07050014",
"LMFA07050154"
],
"metanetx.chemical":[
"MNXM674"
],
"reactome.compound":[
"77341"
],
"sabiork":[
"2741"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03118"
],
"slm":[
"000001027"
]
}
},
{
"id":"3hddcoa_c",
"name":"(S)-3-Hydroxydodecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C33H54N7O18P3S",
"notes":{
"original_bigg_ids":[
"3hddcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hddcoa"
],
"biocyc":[
"META:CPD0-2107"
],
"chebi":[
"CHEBI:396",
"CHEBI:62558",
"CHEBI:18751",
"CHEBI:27668"
],
"hmdb":[
"HMDB62260",
"HMDB03936"
],
"inchi_key":[
"IJFLXRCJWPKGKJ-LXIXEQKWSA-J"
],
"kegg.compound":[
"C05262"
],
"lipidmaps":[
"LMFA07050158",
"LMFA07050012"
],
"metanetx.chemical":[
"MNXM733"
],
"reactome.compound":[
"77252"
],
"sabiork":[
"2739"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03116"
],
"slm":[
"000001023"
]
}
},
{
"id":"dsbard_p",
"name":"Periplasmic protein disulfide isomerase I (reduced)",
"compartment":"p",
"charge":0,
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"dsbard_p"
]
},
"annotation":{
"bigg.metabolite":[
"dsbard"
],
"metanetx.chemical":[
"MNXM12618"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15447"
]
}
},
{
"id":"dctp_c",
"name":"DCTP C9H12N3O13P3",
"compartment":"c",
"charge":-4,
"formula":"C9H12N3O13P3",
"notes":{
"original_bigg_ids":[
"dctp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dctp"
],
"biocyc":[
"META:DCTP"
],
"chebi":[
"CHEBI:19243",
"CHEBI:10494",
"CHEBI:61481",
"CHEBI:16311",
"CHEBI:14072",
"CHEBI:57724"
],
"hmdb":[
"HMDB00998"
],
"inchi_key":[
"RGWHQCVHVJXOKC-SHYZEUOFSA-J"
],
"kegg.compound":[
"C00458"
],
"metanetx.chemical":[
"MNXM360"
],
"sabiork":[
"1678"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00356"
]
}
},
{
"id":"dsbaox_p",
"name":"Periplasmic protein disulfide isomerase I (oxidized)",
"compartment":"p",
"charge":0,
"formula":"X",
"notes":{
"original_bigg_ids":[
"dsbaox_p"
]
},
"annotation":{
"bigg.metabolite":[
"dsbaox"
],
"metanetx.chemical":[
"MNXM97004"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15446"
]
}
},
{
"id":"3htdcoa_c",
"name":"(S)-3-Hydroxytetradecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C35H58N7O18P3S",
"notes":{
"original_bigg_ids":[
"3htdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3htdcoa"
],
"biocyc":[
"META:CPD0-2171"
],
"chebi":[
"CHEBI:400",
"CHEBI:18754",
"CHEBI:62614",
"CHEBI:27466"
],
"hmdb":[
"HMDB03934"
],
"inchi_key":[
"OXBHKMHNDGRDCZ-STLSENOWSA-J"
],
"kegg.compound":[
"C05260"
],
"lipidmaps":[
"LMFA07050257"
],
"metanetx.chemical":[
"MNXM767"
],
"reactome.compound":[
"77276"
],
"sabiork":[
"2737"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03115",
"cpd26436"
],
"slm":[
"000001020"
]
}
},
{
"id":"dutp_c",
"name":"DUTP C9H11N2O14P3",
"compartment":"c",
"charge":-4,
"formula":"C9H11N2O14P3",
"notes":{
"original_bigg_ids":[
"dutp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dutp"
],
"biocyc":[
"META:DUTP"
],
"chebi":[
"CHEBI:17625",
"CHEBI:14095",
"CHEBI:10533",
"CHEBI:61555",
"CHEBI:19264",
"CHEBI:58212"
],
"hmdb":[
"HMDB01191"
],
"inchi_key":[
"AHCYMLUZIRLXAA-SHYZEUOFSA-J"
],
"kegg.compound":[
"C00460"
],
"metanetx.chemical":[
"MNXM452"
],
"reactome.compound":[
"500739"
],
"sabiork":[
"1680"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00358"
]
}
},
{
"id":"3hhdcoa_c",
"name":"(S)-3-Hydroxyhexadecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C37H62N7O18P3S",
"notes":{
"original_bigg_ids":[
"3hhdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hhdcoa"
],
"biocyc":[
"META:CPD0-2232"
],
"chebi":[
"CHEBI:397",
"CHEBI:27402",
"CHEBI:18752",
"CHEBI:62613"
],
"hmdb":[
"HMDB03932"
],
"inchi_key":[
"DEHLMTDDPWDRDR-BCIKBWLNSA-J"
],
"kegg.compound":[
"C05258"
],
"lipidmaps":[
"LMFA07050161"
],
"metanetx.chemical":[
"MNXM825"
],
"reactome.compound":[
"77300"
],
"sabiork":[
"2735"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03113"
],
"slm":[
"000000868"
]
}
},
{
"id":"3hodcoa_c",
"name":"(S)-3-Hydroxyoctadecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C39H66N7O18P3S",
"notes":{
"original_bigg_ids":[
"3hodcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3hodcoa"
],
"biocyc":[
"META:CPD0-2253"
],
"chebi":[
"CHEBI:87561",
"CHEBI:50577"
],
"inchi_key":[
"WZMAIEGYXCOYSH-SFKGBVSGSA-J"
],
"lipidmaps":[
"LMFA07050159"
],
"metanetx.chemical":[
"MNXM31746"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15204"
]
}
},
{
"id":"gthrd_p",
"name":"Reduced glutathione",
"compartment":"p",
"charge":-1,
"formula":"C10H16N3O6S",
"notes":{
"original_bigg_ids":[
"gthrd_p"
]
},
"annotation":{
"bigg.metabolite":[
"gthrd"
],
"biocyc":[
"META:GLUTATHIONE"
],
"chebi":[
"CHEBI:43049",
"CHEBI:14327",
"CHEBI:16856",
"CHEBI:57925",
"CHEBI:12402",
"CHEBI:24334",
"CHEBI:5437",
"CHEBI:42873"
],
"hmdb":[
"HMDB01463",
"HMDB62697",
"HMDB00125",
"HMDB06960"
],
"inchi_key":[
"RWSXRVCMGQZWBV-WDSKDSINSA-M"
],
"kegg.compound":[
"C00051"
],
"kegg.drug":[
"D00014"
],
"metanetx.chemical":[
"MNXM57"
],
"reactome.compound":[
"1247892",
"1500783",
"1655887",
"29450",
"158543"
],
"sabiork":[
"1926"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00042"
]
}
},
{
"id":"duri_c",
"name":"Deoxyuridine",
"compartment":"c",
"charge":0,
"formula":"C9H12N2O5",
"notes":{
"original_bigg_ids":[
"duri_c"
]
},
"annotation":{
"bigg.metabolite":[
"duri"
],
"biocyc":[
"META:DEOXYURIDINE"
],
"chebi":[
"CHEBI:46293",
"CHEBI:14123",
"CHEBI:29113",
"CHEBI:46289",
"CHEBI:4434",
"CHEBI:23640",
"CHEBI:19261",
"CHEBI:46165",
"CHEBI:42178",
"CHEBI:11398",
"CHEBI:16450",
"CHEBI:11572"
],
"hmdb":[
"HMDB00012"
],
"inchi_key":[
"MXHRCPNRJAMMIM-SHYZEUOFSA-N"
],
"kegg.compound":[
"C00526"
],
"metanetx.chemical":[
"MNXM492"
],
"reactome.compound":[
"500430"
],
"sabiork":[
"2074"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00412"
]
}
},
{
"id":"gthox_p",
"name":"Oxidized glutathione",
"compartment":"p",
"charge":-2,
"formula":"C20H30N6O12S2",
"notes":{
"original_bigg_ids":[
"gthox_p"
]
},
"annotation":{
"bigg.metabolite":[
"gthox"
],
"biocyc":[
"META:OXIDIZED-GLUTATHIONE"
],
"chebi":[
"CHEBI:42832",
"CHEBI:14328",
"CHEBI:17858",
"CHEBI:24336",
"CHEBI:7840",
"CHEBI:58297",
"CHEBI:14720"
],
"hmdb":[
"HMDB03337"
],
"inchi_key":[
"YPZRWBKMTBYPTK-BJDJZHNGSA-L"
],
"kegg.compound":[
"C00127"
],
"kegg.drug":[
"D00031"
],
"metanetx.chemical":[
"MNXM151"
],
"reactome.compound":[
"1655882",
"111745",
"3341331"
],
"sabiork":[
"1939"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00111"
]
}
},
{
"id":"dsbcrd_p",
"name":"Protein disulfide isomerase II (reduced)",
"compartment":"p",
"charge":0,
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"dsbcrd_p"
]
},
"annotation":{
"bigg.metabolite":[
"dsbcrd"
],
"metanetx.chemical":[
"MNXM12772"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15449"
]
}
},
{
"id":"6pgc_c",
"name":"6-Phospho-D-gluconate",
"compartment":"c",
"charge":-3,
"formula":"C6H10O10P",
"notes":{
"original_bigg_ids":[
"6pgc_c"
]
},
"annotation":{
"bigg.metabolite":[
"6pgc"
],
"biocyc":[
"META:CPD-2961"
],
"chebi":[
"CHEBI:33851",
"CHEBI:2231",
"CHEBI:16863",
"CHEBI:40282",
"CHEBI:12232",
"CHEBI:48928",
"CHEBI:58759"
],
"hmdb":[
"HMDB01316",
"HMDB62800"
],
"inchi_key":[
"BIRSGZKFKXLSJQ-SQOUGZDYSA-K"
],
"kegg.compound":[
"C00345"
],
"metanetx.chemical":[
"MNXM325"
],
"reactome.compound":[
"29996"
],
"sabiork":[
"22801",
"2024"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00284"
]
}
},
{
"id":"dcyt_c",
"name":"Deoxycytidine",
"compartment":"c",
"charge":0,
"formula":"C9H13N3O4",
"notes":{
"original_bigg_ids":[
"dcyt_c"
]
},
"annotation":{
"bigg.metabolite":[
"dcyt"
],
"biocyc":[
"META:DEOXYCYTIDINE"
],
"chebi":[
"CHEBI:41434",
"CHEBI:15698",
"CHEBI:41430",
"CHEBI:4407",
"CHEBI:19240",
"CHEBI:41806",
"CHEBI:41417"
],
"hmdb":[
"HMDB00014"
],
"inchi_key":[
"CKTSBUTUHBMZGZ-SHYZEUOFSA-N"
],
"kegg.compound":[
"C00881"
],
"metanetx.chemical":[
"MNXM704"
],
"reactome.compound":[
"500829"
],
"sabiork":[
"2178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00654"
]
}
},
{
"id":"kdo2lipid4_c",
"name":"KDO(2)-lipid IV(A)",
"compartment":"c",
"charge":-6,
"formula":"C84H148N2O37P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4"
],
"biocyc":[
"META:KDO2-LIPID-IVA"
],
"chebi":[
"CHEBI:28526",
"CHEBI:60365",
"CHEBI:4477",
"CHEBI:23657"
],
"inchi_key":[
"XAOLJGCZESYRFT-VHSKNIDJSA-H"
],
"kegg.compound":[
"C06025"
],
"kegg.glycan":[
"G11160"
],
"lipidmaps":[
"LMSL02000003"
],
"metanetx.chemical":[
"MNXM824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03586"
]
}
},
{
"id":"dsbcox_p",
"name":"Protein disulfide isomerase II (oxidized)",
"compartment":"p",
"charge":0,
"formula":"X",
"notes":{
"original_bigg_ids":[
"dsbcox_p"
]
},
"annotation":{
"bigg.metabolite":[
"dsbcox"
],
"metanetx.chemical":[
"MNXM97006"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15448"
]
}
},
{
"id":"dcyt_p",
"name":"Deoxycytidine",
"compartment":"p",
"charge":0,
"formula":"C9H13N3O4",
"notes":{
"original_bigg_ids":[
"dcyt_p"
]
},
"annotation":{
"bigg.metabolite":[
"dcyt"
],
"biocyc":[
"META:DEOXYCYTIDINE"
],
"chebi":[
"CHEBI:41434",
"CHEBI:15698",
"CHEBI:41430",
"CHEBI:4407",
"CHEBI:19240",
"CHEBI:41806",
"CHEBI:41417"
],
"hmdb":[
"HMDB00014"
],
"inchi_key":[
"CKTSBUTUHBMZGZ-SHYZEUOFSA-N"
],
"kegg.compound":[
"C00881"
],
"metanetx.chemical":[
"MNXM704"
],
"reactome.compound":[
"500829"
],
"sabiork":[
"2178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00654"
]
}
},
{
"id":"dsbdox_c",
"name":"Fused thiol:disulfide interchange protein (oxidized)",
"compartment":"c",
"charge":0,
"formula":"X",
"notes":{
"original_bigg_ids":[
"dsbdox_c"
]
},
"annotation":{
"bigg.metabolite":[
"dsbdox"
],
"metanetx.chemical":[
"MNXM97001"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15450"
]
}
},
{
"id":"kdo2lipid4L_c",
"name":"KDO(2)-lipid IV(A) with laurate",
"compartment":"c",
"charge":-6,
"formula":"C96H170N2O38P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4L_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4L"
],
"chebi":[
"CHEBI:6393",
"CHEBI:25015",
"CHEBI:27422",
"CHEBI:61524",
"CHEBI:61554"
],
"inchi_key":[
"JVUUYJGQIVCMIU-ZODGSCPMSA-H"
],
"kegg.compound":[
"C06251"
],
"lipidmaps":[
"LMSL02000002"
],
"metanetx.chemical":[
"MNXM1870"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29678",
"cpd03736"
]
}
},
{
"id":"dcyt_e",
"name":"Deoxycytidine",
"compartment":"e",
"charge":0,
"formula":"C9H13N3O4",
"notes":{
"original_bigg_ids":[
"dcyt_e"
]
},
"annotation":{
"bigg.metabolite":[
"dcyt"
],
"biocyc":[
"META:DEOXYCYTIDINE"
],
"chebi":[
"CHEBI:41434",
"CHEBI:15698",
"CHEBI:41430",
"CHEBI:4407",
"CHEBI:19240",
"CHEBI:41806",
"CHEBI:41417"
],
"hmdb":[
"HMDB00014"
],
"inchi_key":[
"CKTSBUTUHBMZGZ-SHYZEUOFSA-N"
],
"kegg.compound":[
"C00881"
],
"metanetx.chemical":[
"MNXM704"
],
"reactome.compound":[
"500829"
],
"sabiork":[
"2178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00654"
]
}
},
{
"id":"lipa_c",
"name":"KDO(2)-lipid (A)",
"compartment":"c",
"charge":-6,
"formula":"C110H196N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipa"
],
"chebi":[
"CHEBI:27963",
"CHEBI:4476",
"CHEBI:23656",
"CHEBI:58540"
],
"inchi_key":[
"DIXUKJUHGLIZGU-OIPVZEHTSA-H"
],
"kegg.compound":[
"C06026"
],
"lipidmaps":[
"LMSL02000001"
],
"metanetx.chemical":[
"MNXM946"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03587"
]
}
},
{
"id":"trdrd_c",
"name":"Reduced thioredoxin",
"compartment":"c",
"charge":0,
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"trdrd_c"
]
},
"annotation":{
"bigg.metabolite":[
"trdrd"
],
"biocyc":[
"META:Red-Thioredoxin"
],
"chebi":[
"CHEBI:15033"
],
"kegg.compound":[
"C00342"
],
"metanetx.chemical":[
"MNXM96993"
],
"reactome.compound":[
"2142774"
],
"sabiork":[
"2803",
"1330"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11421",
"cpd28060"
]
}
},
{
"id":"ddca_e",
"name":"Dodecanoate (n-C12:0)",
"compartment":"e",
"charge":-1,
"formula":"C12H23O2",
"notes":{
"original_bigg_ids":[
"ddca_e"
]
},
"annotation":{
"bigg.metabolite":[
"ddca"
],
"metanetx.chemical":[
"MNXM162258"
],
"sbo":"SBO:0000247"
}
},
{
"id":"trdox_c",
"name":"Oxidized thioredoxin",
"compartment":"c",
"charge":0,
"formula":"X",
"notes":{
"original_bigg_ids":[
"trdox_c"
]
},
"annotation":{
"bigg.metabolite":[
"trdox"
],
"biocyc":[
"META:Ox-Thioredoxin"
],
"chebi":[
"CHEBI:14726",
"CHEBI:15240",
"CHEBI:7845",
"CHEBI:18191"
],
"kegg.compound":[
"C00343"
],
"metanetx.chemical":[
"MNXM148"
],
"reactome.compound":[
"2142833"
],
"sabiork":[
"1331"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27735",
"cpd29682",
"cpd11420"
]
}
},
{
"id":"kdo2lipid4p_c",
"name":"KDO(2)-lipid IV(A) with palmitoleoyl",
"compartment":"c",
"charge":-6,
"formula":"C100H176N2O38P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4p"
],
"biocyc":[
"META:CPD0-2265"
],
"inchi_key":[
"LDKYKDQAKNLWER-RLUYZOBBSA-H"
],
"metanetx.chemical":[
"MNXM58983"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15491"
]
}
},
{
"id":"ddca_p",
"name":"Dodecanoate (n-C12:0)",
"compartment":"p",
"charge":-1,
"formula":"C12H23O2",
"notes":{
"original_bigg_ids":[
"ddca_p"
]
},
"annotation":{
"bigg.metabolite":[
"ddca"
],
"metanetx.chemical":[
"MNXM162258"
],
"sbo":"SBO:0000247"
}
},
{
"id":"lipa_cold_c",
"name":"Cold adapted KDO(2)-lipid (A)",
"compartment":"c",
"charge":-6,
"formula":"C114H202N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_cold_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipa_cold"
],
"biocyc":[
"META:KDO2-LIPID-IVA-COLD"
],
"chebi":[
"CHEBI:61556",
"CHEBI:61522"
],
"inchi_key":[
"YMYMIWUIGJUAIZ-LSPGFKFTSA-H"
],
"metanetx.chemical":[
"MNXM6016"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15493"
]
}
},
{
"id":"dsbdrd_c",
"name":"Fused thiol:disulfide interchange protein (reduced)",
"compartment":"c",
"charge":0,
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"dsbdrd_c"
]
},
"annotation":{
"bigg.metabolite":[
"dsbdrd"
],
"metanetx.chemical":[
"MNXM8620"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15451"
]
}
},
{
"id":"dsbgox_p",
"name":"Periplasmic disulfide isomerase/thiol-disulphide oxidase (oxidized)",
"compartment":"p",
"charge":0,
"formula":"X",
"notes":{
"original_bigg_ids":[
"dsbgox_p"
]
},
"annotation":{
"bigg.metabolite":[
"dsbgox"
],
"metanetx.chemical":[
"MNXM97003"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15452"
]
}
},
{
"id":"2dh3dgal_c",
"name":"2-Dehydro-3-deoxy-D-galactonate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O6",
"notes":{
"original_bigg_ids":[
"2dh3dgal_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dh3dgal"
],
"biocyc":[
"META:2-DEHYDRO-3-DEOXY-D-GALACTONATE"
],
"chebi":[
"CHEBI:1056",
"CHEBI:57989",
"CHEBI:19527",
"CHEBI:17028",
"CHEBI:11547"
],
"inchi_key":[
"WPAMZTWLKIDIOP-NQXXGFSBSA-M"
],
"kegg.compound":[
"C01216"
],
"lipidmaps":[
"LMFA01050486"
],
"metanetx.chemical":[
"MNXM1627"
],
"sabiork":[
"5451",
"21126"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00894"
]
}
},
{
"id":"dsbgrd_p",
"name":"Periplasmic disulfide isomerase/thiol-disulphide oxidase (reduced)",
"compartment":"p",
"charge":0,
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"dsbgrd_p"
]
},
"annotation":{
"bigg.metabolite":[
"dsbgrd"
],
"metanetx.chemical":[
"MNXM12615"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15453"
]
}
},
{
"id":"enlipa_p",
"name":"Phosphoethanolamine KDO(2)-lipid (A)",
"compartment":"p",
"charge":-6,
"formula":"C112H202N3O42P3",
"notes":{
"original_bigg_ids":[
"enlipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"enlipa"
],
"chebi":[
"CHEBI:47762",
"CHEBI:60085"
],
"inchi_key":[
"GSHAAWZSAOJXLM-RQBQWGHISA-H"
],
"kegg.compound":[
"C21173"
],
"metanetx.chemical":[
"MNXM7670"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15459"
]
}
},
{
"id":"2dh3dgal6p_c",
"name":"2-Dehydro-3-deoxy-D-galactonate 6-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C6H8O9P",
"notes":{
"original_bigg_ids":[
"2dh3dgal6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dh3dgal6p"
],
"biocyc":[
"META:DEHYDRO-DEOXY-GALACTONATE-PHOSPHATE"
],
"chebi":[
"CHEBI:11548",
"CHEBI:19528",
"CHEBI:17860",
"CHEBI:58298",
"CHEBI:1057"
],
"inchi_key":[
"OVPRPPOVAXRCED-NQXXGFSBSA-K"
],
"kegg.compound":[
"C01286"
],
"metanetx.chemical":[
"MNXM90136"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00945"
]
}
},
{
"id":"enlipa_e",
"name":"Phosphoethanolamine KDO(2)-lipid (A)",
"compartment":"e",
"charge":-6,
"formula":"C112H202N3O42P3",
"notes":{
"original_bigg_ids":[
"enlipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"enlipa"
],
"chebi":[
"CHEBI:47762",
"CHEBI:60085"
],
"inchi_key":[
"GSHAAWZSAOJXLM-RQBQWGHISA-H"
],
"kegg.compound":[
"C21173"
],
"metanetx.chemical":[
"MNXM7670"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15459"
]
}
},
{
"id":"ser__D_c",
"name":"D-Serine",
"compartment":"c",
"charge":0,
"formula":"C3H7NO3",
"notes":{
"original_bigg_ids":[
"ser_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"ser__D"
],
"biocyc":[
"META:D-SERINE"
],
"chebi":[
"CHEBI:35247",
"CHEBI:16523",
"CHEBI:42262",
"CHEBI:13019",
"CHEBI:32841",
"CHEBI:143888",
"CHEBI:21090",
"CHEBI:32840",
"CHEBI:4245"
],
"hmdb":[
"HMDB03406"
],
"inchi_key":[
"MTCFGRXMJLQNBG-UWTATZPHSA-N"
],
"kegg.compound":[
"C00740"
],
"metanetx.chemical":[
"MNXM694"
],
"sabiork":[
"2144"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00550"
]
}
},
{
"id":"2ddglcn_p",
"name":"2-Dehydro-3-deoxy-D-gluconate",
"compartment":"p",
"charge":-1,
"formula":"C6H9O6",
"notes":{
"original_bigg_ids":[
"2ddglcn_p"
]
},
"annotation":{
"bigg.metabolite":[
"2ddglcn"
],
"biocyc":[
"META:2-DEHYDRO-3-DEOXY-D-GLUCONATE"
],
"chebi":[
"CHEBI:1059",
"CHEBI:11550",
"CHEBI:19530",
"CHEBI:17032",
"CHEBI:57990"
],
"inchi_key":[
"WPAMZTWLKIDIOP-WVZVXSGGSA-M"
],
"kegg.compound":[
"C00204"
],
"lipidmaps":[
"LMFA01050475"
],
"metanetx.chemical":[
"MNXM440"
],
"sabiork":[
"1973",
"21127"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00176"
]
}
},
{
"id":"2amsa_c",
"name":"2-Aminomalonate semialdehyde",
"compartment":"c",
"charge":0,
"formula":"C3H5NO3",
"notes":{
"original_bigg_ids":[
"2amsa_c"
]
},
"annotation":{
"bigg.metabolite":[
"2amsa"
],
"biocyc":[
"META:2-AMINOMALONATE-SEMIALDEHYDE"
],
"chebi":[
"CHEBI:77662",
"CHEBI:1020",
"CHEBI:21210",
"CHEBI:37012",
"CHEBI:58671"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/a5f22d9e-2c03-4186-94c9-b4a32eb48adb"
],
"inchi_key":[
"XMTCKNXTTXDPJX-REOHCLBHSA-N"
],
"kegg.compound":[
"C11822"
],
"metanetx.chemical":[
"MNXM2124"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08626"
]
}
},
{
"id":"2pg_c",
"name":"D-Glycerate 2-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C3H4O7P",
"notes":{
"original_bigg_ids":[
"2pg_c"
]
},
"annotation":{
"bigg.metabolite":[
"2pg"
],
"biocyc":[
"META:2-PG"
],
"chebi":[
"CHEBI:39868",
"CHEBI:21028",
"CHEBI:58289",
"CHEBI:24344",
"CHEBI:12986",
"CHEBI:17835",
"CHEBI:11651",
"CHEBI:1267",
"CHEBI:88350"
],
"hmdb":[
"HMDB00362",
"HMDB62707",
"HMDB03391"
],
"inchi_key":[
"GXIURPTVHJPJLF-UWTATZPHSA-K"
],
"kegg.compound":[
"C00631"
],
"metanetx.chemical":[
"MNXM275"
],
"reactome.compound":[
"30485"
],
"sabiork":[
"31"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00482"
]
}
},
{
"id":"2ddglcn_e",
"name":"2-Dehydro-3-deoxy-D-gluconate",
"compartment":"e",
"charge":-1,
"formula":"C6H9O6",
"notes":{
"original_bigg_ids":[
"2ddglcn_e"
]
},
"annotation":{
"bigg.metabolite":[
"2ddglcn"
],
"biocyc":[
"META:2-DEHYDRO-3-DEOXY-D-GLUCONATE"
],
"chebi":[
"CHEBI:1059",
"CHEBI:11550",
"CHEBI:19530",
"CHEBI:17032",
"CHEBI:57990"
],
"inchi_key":[
"WPAMZTWLKIDIOP-WVZVXSGGSA-M"
],
"kegg.compound":[
"C00204"
],
"lipidmaps":[
"LMFA01050475"
],
"metanetx.chemical":[
"MNXM440"
],
"sabiork":[
"1973",
"21127"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00176"
]
}
},
{
"id":"seramp_c",
"name":"L-seryl-AMP",
"compartment":"c",
"charge":0,
"formula":"C13H19N6O9P",
"notes":{
"original_bigg_ids":[
"seramp_c"
]
},
"annotation":{
"bigg.metabolite":[
"seramp"
],
"biocyc":[
"META:SERYL-AMP"
],
"chebi":[
"CHEBI:61231",
"CHEBI:61645",
"CHEBI:286"
],
"inchi_key":[
"UVSYURUCZPPUQD-MACXSXHHSA-M"
],
"kegg.compound":[
"C05820"
],
"metanetx.chemical":[
"MNXM114390"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03452",
"cpd15564"
]
}
},
{
"id":"ser__D_p",
"name":"D-Serine",
"compartment":"p",
"charge":0,
"formula":"C3H7NO3",
"notes":{
"original_bigg_ids":[
"ser_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"ser__D"
],
"biocyc":[
"META:D-SERINE"
],
"chebi":[
"CHEBI:35247",
"CHEBI:16523",
"CHEBI:42262",
"CHEBI:13019",
"CHEBI:32841",
"CHEBI:143888",
"CHEBI:21090",
"CHEBI:32840",
"CHEBI:4245"
],
"hmdb":[
"HMDB03406"
],
"inchi_key":[
"MTCFGRXMJLQNBG-UWTATZPHSA-N"
],
"kegg.compound":[
"C00740"
],
"metanetx.chemical":[
"MNXM694"
],
"sabiork":[
"2144"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00550"
]
}
},
{
"id":"2ddglcn_c",
"name":"2-Dehydro-3-deoxy-D-gluconate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O6",
"notes":{
"original_bigg_ids":[
"2ddglcn_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ddglcn"
],
"biocyc":[
"META:2-DEHYDRO-3-DEOXY-D-GLUCONATE"
],
"chebi":[
"CHEBI:1059",
"CHEBI:11550",
"CHEBI:19530",
"CHEBI:17032",
"CHEBI:57990"
],
"inchi_key":[
"WPAMZTWLKIDIOP-WVZVXSGGSA-M"
],
"kegg.compound":[
"C00204"
],
"lipidmaps":[
"LMFA01050475"
],
"metanetx.chemical":[
"MNXM440"
],
"sabiork":[
"1973",
"21127"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00176"
]
}
},
{
"id":"ser__D_e",
"name":"D-Serine",
"compartment":"e",
"charge":0,
"formula":"C3H7NO3",
"notes":{
"original_bigg_ids":[
"ser_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"ser__D"
],
"biocyc":[
"META:D-SERINE"
],
"chebi":[
"CHEBI:35247",
"CHEBI:16523",
"CHEBI:42262",
"CHEBI:13019",
"CHEBI:32841",
"CHEBI:143888",
"CHEBI:21090",
"CHEBI:32840",
"CHEBI:4245"
],
"hmdb":[
"HMDB03406"
],
"inchi_key":[
"MTCFGRXMJLQNBG-UWTATZPHSA-N"
],
"kegg.compound":[
"C00740"
],
"metanetx.chemical":[
"MNXM694"
],
"sabiork":[
"2144"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00550"
]
}
},
{
"id":"enter_c",
"name":"Enterochelin",
"compartment":"c",
"charge":0,
"formula":"C30H27N3O15",
"notes":{
"original_bigg_ids":[
"enter_c"
]
},
"annotation":{
"bigg.metabolite":[
"enter"
],
"biocyc":[
"META:ENTEROBACTIN"
],
"chebi":[
"CHEBI:4799",
"CHEBI:38150",
"CHEBI:28855",
"CHEBI:77805",
"CHEBI:23923"
],
"hmdb":[
"HMDB32199"
],
"inchi_key":[
"SERBHKJMVBATSJ-BZSNNMDCSA-M"
],
"kegg.compound":[
"C05821"
],
"metanetx.chemical":[
"MNXM883"
],
"reactome.compound":[
"1222366"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03453"
]
}
},
{
"id":"etha_c",
"name":"Ethanolamine",
"compartment":"c",
"charge":1,
"formula":"C2H8NO",
"notes":{
"original_bigg_ids":[
"etha_c"
]
},
"annotation":{
"bigg.metabolite":[
"etha"
],
"biocyc":[
"META:ETHANOL-AMINE"
],
"chebi":[
"CHEBI:57603",
"CHEBI:23979",
"CHEBI:42323",
"CHEBI:4880",
"CHEBI:272066",
"CHEBI:14223",
"CHEBI:16000"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/66a5817c-409d-4b53-87ea-bb9edd311dc5",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9cee8877-412f-4ce0-a56d-b7c5de20969e"
],
"hmdb":[
"HMDB00149",
"HMDB62693"
],
"inchi_key":[
"HZAXFHJVJLSVMW-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00189"
],
"kegg.drug":[
"D05074"
],
"metanetx.chemical":[
"MNXM218"
],
"sabiork":[
"1965"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00162"
]
}
},
{
"id":"2ddg6p_c",
"name":"2-Dehydro-3-deoxy-D-gluconate 6-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C6H8O9P",
"notes":{
"original_bigg_ids":[
"2ddg6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ddg6p"
],
"biocyc":[
"META:2-KETO-3-DEOXY-6-P-GLUCONATE"
],
"chebi":[
"CHEBI:57569",
"CHEBI:11551",
"CHEBI:15925",
"CHEBI:11543",
"CHEBI:1051",
"CHEBI:12227",
"CHEBI:19522"
],
"hmdb":[
"HMDB01376"
],
"inchi_key":[
"OVPRPPOVAXRCED-WVZVXSGGSA-K"
],
"kegg.compound":[
"C04442"
],
"metanetx.chemical":[
"MNXM649"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02711"
]
}
},
{
"id":"etha_p",
"name":"Ethanolamine",
"compartment":"p",
"charge":1,
"formula":"C2H8NO",
"notes":{
"original_bigg_ids":[
"etha_p"
]
},
"annotation":{
"bigg.metabolite":[
"etha"
],
"biocyc":[
"META:ETHANOL-AMINE"
],
"chebi":[
"CHEBI:57603",
"CHEBI:23979",
"CHEBI:42323",
"CHEBI:4880",
"CHEBI:272066",
"CHEBI:14223",
"CHEBI:16000"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/66a5817c-409d-4b53-87ea-bb9edd311dc5",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9cee8877-412f-4ce0-a56d-b7c5de20969e"
],
"hmdb":[
"HMDB00149",
"HMDB62693"
],
"inchi_key":[
"HZAXFHJVJLSVMW-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00189"
],
"kegg.drug":[
"D05074"
],
"metanetx.chemical":[
"MNXM218"
],
"sabiork":[
"1965"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00162"
]
}
},
{
"id":"dtdp_c",
"name":"DTDP C10H13N2O11P2",
"compartment":"c",
"charge":-3,
"formula":"C10H13N2O11P2",
"notes":{
"original_bigg_ids":[
"dtdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdp"
],
"biocyc":[
"META:TDP"
],
"chebi":[
"CHEBI:58369",
"CHEBI:26998",
"CHEBI:14077",
"CHEBI:10500",
"CHEBI:18075",
"CHEBI:46061"
],
"hmdb":[
"HMDB01274"
],
"inchi_key":[
"UJLXYODCHAELLY-XLPZGREQSA-K"
],
"kegg.compound":[
"C00363"
],
"metanetx.chemical":[
"MNXM152"
],
"sabiork":[
"1333"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00297"
]
}
},
{
"id":"e4p_c",
"name":"D-Erythrose 4-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C4H7O7P",
"notes":{
"original_bigg_ids":[
"e4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"e4p"
],
"biocyc":[
"META:ERYTHROSE-4P"
],
"chebi":[
"CHEBI:4114",
"CHEBI:20927",
"CHEBI:12921",
"CHEBI:48153",
"CHEBI:16897",
"CHEBI:42349"
],
"hmdb":[
"HMDB01321"
],
"inchi_key":[
"NGHMDNPXVRFFGS-IUYQGCFVSA-L"
],
"kegg.compound":[
"C00279"
],
"metanetx.chemical":[
"MNXM258"
],
"reactome.compound":[
"29878"
],
"sabiork":[
"1324"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00236"
]
}
},
{
"id":"dtmp_c",
"name":"DTMP C10H13N2O8P",
"compartment":"c",
"charge":-2,
"formula":"C10H13N2O8P",
"notes":{
"original_bigg_ids":[
"dtmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtmp"
],
"biocyc":[
"META:TMP"
],
"chebi":[
"CHEBI:47711",
"CHEBI:26999",
"CHEBI:63549",
"CHEBI:17013",
"CHEBI:63528",
"CHEBI:45772",
"CHEBI:45762",
"CHEBI:46960",
"CHEBI:45759",
"CHEBI:10529",
"CHEBI:45926",
"CHEBI:14092",
"CHEBI:46013",
"CHEBI:15246",
"CHEBI:46036"
],
"hmdb":[
"HMDB01227"
],
"inchi_key":[
"GYOZYWVXFNDGLU-XLPZGREQSA-L"
],
"kegg.compound":[
"C00364"
],
"metanetx.chemical":[
"MNXM257"
],
"reactome.compound":[
"109366"
],
"sabiork":[
"65"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00298"
]
}
},
{
"id":"etha_e",
"name":"Ethanolamine",
"compartment":"e",
"charge":1,
"formula":"C2H8NO",
"notes":{
"original_bigg_ids":[
"etha_e"
]
},
"annotation":{
"bigg.metabolite":[
"etha"
],
"biocyc":[
"META:ETHANOL-AMINE"
],
"chebi":[
"CHEBI:57603",
"CHEBI:23979",
"CHEBI:42323",
"CHEBI:4880",
"CHEBI:272066",
"CHEBI:14223",
"CHEBI:16000"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/66a5817c-409d-4b53-87ea-bb9edd311dc5",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9cee8877-412f-4ce0-a56d-b7c5de20969e"
],
"hmdb":[
"HMDB00149",
"HMDB62693"
],
"inchi_key":[
"HZAXFHJVJLSVMW-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00189"
],
"kegg.drug":[
"D05074"
],
"metanetx.chemical":[
"MNXM218"
],
"sabiork":[
"1965"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00162"
]
}
},
{
"id":"2dda7p_c",
"name":"2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C7H10O10P",
"notes":{
"original_bigg_ids":[
"2dda7p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dda7p"
],
"biocyc":[
"META:3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P"
],
"chebi":[
"CHEBI:1053",
"CHEBI:18150",
"CHEBI:11544",
"CHEBI:11785",
"CHEBI:19523",
"CHEBI:58394",
"CHEBI:20003",
"CHEBI:11786",
"CHEBI:29477"
],
"inchi_key":[
"PJWIPEXIFFQAQZ-PUFIMZNGSA-K"
],
"kegg.compound":[
"C04691"
],
"metanetx.chemical":[
"MNXM1219"
],
"reactome.compound":[
"964909"
],
"sabiork":[
"1828"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02857"
]
}
},
{
"id":"ethso3_e",
"name":"Ethanesulfonate",
"compartment":"e",
"charge":-1,
"formula":"C2H5O3S",
"notes":{
"original_bigg_ids":[
"ethso3_e"
]
},
"annotation":{
"bigg.metabolite":[
"ethso3"
],
"biocyc":[
"META:CPD-10434"
],
"chebi":[
"CHEBI:61909",
"CHEBI:42465"
],
"inchi_key":[
"CCIVGXIOQKPBKL-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM7343"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11579"
]
}
},
{
"id":"dtmp_e",
"name":"DTMP C10H13N2O8P",
"compartment":"e",
"charge":-2,
"formula":"C10H13N2O8P",
"notes":{
"original_bigg_ids":[
"dtmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"dtmp"
],
"biocyc":[
"META:TMP"
],
"chebi":[
"CHEBI:47711",
"CHEBI:26999",
"CHEBI:63549",
"CHEBI:17013",
"CHEBI:63528",
"CHEBI:45772",
"CHEBI:45762",
"CHEBI:46960",
"CHEBI:45759",
"CHEBI:10529",
"CHEBI:45926",
"CHEBI:14092",
"CHEBI:46013",
"CHEBI:15246",
"CHEBI:46036"
],
"hmdb":[
"HMDB01227"
],
"inchi_key":[
"GYOZYWVXFNDGLU-XLPZGREQSA-L"
],
"kegg.compound":[
"C00364"
],
"metanetx.chemical":[
"MNXM257"
],
"reactome.compound":[
"109366"
],
"sabiork":[
"65"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00298"
]
}
},
{
"id":"dgmp_c",
"name":"DGMP C10H12N5O7P",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"dgmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dgmp"
],
"biocyc":[
"META:DGMP"
],
"chebi":[
"CHEBI:57673",
"CHEBI:16192",
"CHEBI:42726",
"CHEBI:41902",
"CHEBI:42733",
"CHEBI:47449",
"CHEBI:42676",
"CHEBI:19246",
"CHEBI:14074",
"CHEBI:10496",
"CHEBI:41939",
"CHEBI:41944",
"CHEBI:45049"
],
"inchi_key":[
"LTFMZDNNPPEQNG-KVQBGUIXSA-L"
],
"kegg.compound":[
"C00362"
],
"metanetx.chemical":[
"MNXM546"
],
"reactome.compound":[
"500071"
],
"sabiork":[
"64"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00296"
]
}
},
{
"id":"dtmp_p",
"name":"DTMP C10H13N2O8P",
"compartment":"p",
"charge":-2,
"formula":"C10H13N2O8P",
"notes":{
"original_bigg_ids":[
"dtmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"dtmp"
],
"biocyc":[
"META:TMP"
],
"chebi":[
"CHEBI:47711",
"CHEBI:26999",
"CHEBI:63549",
"CHEBI:17013",
"CHEBI:63528",
"CHEBI:45772",
"CHEBI:45762",
"CHEBI:46960",
"CHEBI:45759",
"CHEBI:10529",
"CHEBI:45926",
"CHEBI:14092",
"CHEBI:46013",
"CHEBI:15246",
"CHEBI:46036"
],
"hmdb":[
"HMDB01227"
],
"inchi_key":[
"GYOZYWVXFNDGLU-XLPZGREQSA-L"
],
"kegg.compound":[
"C00364"
],
"metanetx.chemical":[
"MNXM257"
],
"reactome.compound":[
"109366"
],
"sabiork":[
"65"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00298"
]
}
},
{
"id":"ethso3_p",
"name":"Ethanesulfonate",
"compartment":"p",
"charge":-1,
"formula":"C2H5O3S",
"notes":{
"original_bigg_ids":[
"ethso3_p"
]
},
"annotation":{
"bigg.metabolite":[
"ethso3"
],
"biocyc":[
"META:CPD-10434"
],
"chebi":[
"CHEBI:61909",
"CHEBI:42465"
],
"inchi_key":[
"CCIVGXIOQKPBKL-UHFFFAOYSA-M"
],
"metanetx.chemical":[
"MNXM7343"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11579"
]
}
},
{
"id":"dgdp_c",
"name":"DGDP C10H12N5O10P2",
"compartment":"c",
"charge":-3,
"formula":"C10H12N5O10P2",
"notes":{
"original_bigg_ids":[
"dgdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dgdp"
],
"biocyc":[
"META:DGDP"
],
"chebi":[
"CHEBI:58595",
"CHEBI:19245",
"CHEBI:41949",
"CHEBI:28862",
"CHEBI:10495"
],
"hmdb":[
"HMDB00960"
],
"inchi_key":[
"CIKGWCTVFSRMJU-KVQBGUIXSA-K"
],
"kegg.compound":[
"C00361"
],
"metanetx.chemical":[
"MNXM436"
],
"reactome.compound":[
"500077"
],
"sabiork":[
"1677"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00295"
]
}
},
{
"id":"etoh_c",
"name":"Ethanol",
"compartment":"c",
"charge":0,
"formula":"C2H6O",
"notes":{
"original_bigg_ids":[
"etoh_c"
]
},
"annotation":{
"bigg.metabolite":[
"etoh"
],
"biocyc":[
"META:ETOH"
],
"chebi":[
"CHEBI:42377",
"CHEBI:23978",
"CHEBI:30880",
"CHEBI:16236",
"CHEBI:52092",
"CHEBI:30878",
"CHEBI:4879",
"CHEBI:44594",
"CHEBI:14222"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a354fd-5003-4b7b-b11b-f54204aea384",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f89efe7c-1a6a-4d21-b99c-e3e1070a8062",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/56e18a05-c059-433a-94f6-0e26c01b010f",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9fb1fbdf-101b-4b82-a596-d2f52c870e4f"
],
"hmdb":[
"HMDB00108"
],
"inchi_key":[
"LFQSCWFLJHTTHZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00469"
],
"kegg.drug":[
"D06542",
"D02798",
"D00068",
"D04855"
],
"metanetx.chemical":[
"MNXM303"
],
"reactome.compound":[
"113748",
"30203"
],
"sabiork":[
"56"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00363"
]
}
},
{
"id":"dump_p",
"name":"DUMP C9H11N2O8P",
"compartment":"p",
"charge":-2,
"formula":"C9H11N2O8P",
"notes":{
"original_bigg_ids":[
"dump_p"
]
},
"annotation":{
"bigg.metabolite":[
"dump"
],
"biocyc":[
"META:DUMP"
],
"chebi":[
"CHEBI:19263",
"CHEBI:14094",
"CHEBI:46288",
"CHEBI:246422",
"CHEBI:47722",
"CHEBI:17622",
"CHEBI:42245",
"CHEBI:46286",
"CHEBI:10532"
],
"hmdb":[
"HMDB01409"
],
"inchi_key":[
"JSRLJPSBLDHEIO-SHYZEUOFSA-L"
],
"kegg.compound":[
"C00365"
],
"metanetx.chemical":[
"MNXM234"
],
"reactome.compound":[
"109382",
"500742"
],
"sabiork":[
"1334"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00299"
]
}
},
{
"id":"dgmp_p",
"name":"DGMP C10H12N5O7P",
"compartment":"p",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"dgmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"dgmp"
],
"biocyc":[
"META:DGMP"
],
"chebi":[
"CHEBI:57673",
"CHEBI:16192",
"CHEBI:42726",
"CHEBI:41902",
"CHEBI:42733",
"CHEBI:47449",
"CHEBI:42676",
"CHEBI:19246",
"CHEBI:14074",
"CHEBI:10496",
"CHEBI:41939",
"CHEBI:41944",
"CHEBI:45049"
],
"inchi_key":[
"LTFMZDNNPPEQNG-KVQBGUIXSA-L"
],
"kegg.compound":[
"C00362"
],
"metanetx.chemical":[
"MNXM546"
],
"reactome.compound":[
"500071"
],
"sabiork":[
"64"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00296"
]
}
},
{
"id":"dump_e",
"name":"DUMP C9H11N2O8P",
"compartment":"e",
"charge":-2,
"formula":"C9H11N2O8P",
"notes":{
"original_bigg_ids":[
"dump_e"
]
},
"annotation":{
"bigg.metabolite":[
"dump"
],
"biocyc":[
"META:DUMP"
],
"chebi":[
"CHEBI:19263",
"CHEBI:14094",
"CHEBI:46288",
"CHEBI:246422",
"CHEBI:47722",
"CHEBI:17622",
"CHEBI:42245",
"CHEBI:46286",
"CHEBI:10532"
],
"hmdb":[
"HMDB01409"
],
"inchi_key":[
"JSRLJPSBLDHEIO-SHYZEUOFSA-L"
],
"kegg.compound":[
"C00365"
],
"metanetx.chemical":[
"MNXM234"
],
"reactome.compound":[
"109382",
"500742"
],
"sabiork":[
"1334"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00299"
]
}
},
{
"id":"etoh_p",
"name":"Ethanol",
"compartment":"p",
"charge":0,
"formula":"C2H6O",
"notes":{
"original_bigg_ids":[
"etoh_p"
]
},
"annotation":{
"bigg.metabolite":[
"etoh"
],
"biocyc":[
"META:ETOH"
],
"chebi":[
"CHEBI:42377",
"CHEBI:23978",
"CHEBI:30880",
"CHEBI:16236",
"CHEBI:52092",
"CHEBI:30878",
"CHEBI:4879",
"CHEBI:44594",
"CHEBI:14222"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a354fd-5003-4b7b-b11b-f54204aea384",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f89efe7c-1a6a-4d21-b99c-e3e1070a8062",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/56e18a05-c059-433a-94f6-0e26c01b010f",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9fb1fbdf-101b-4b82-a596-d2f52c870e4f"
],
"hmdb":[
"HMDB00108"
],
"inchi_key":[
"LFQSCWFLJHTTHZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00469"
],
"kegg.drug":[
"D06542",
"D02798",
"D00068",
"D04855"
],
"metanetx.chemical":[
"MNXM303"
],
"reactome.compound":[
"113748",
"30203"
],
"sabiork":[
"56"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00363"
]
}
},
{
"id":"etoh_e",
"name":"Ethanol",
"compartment":"e",
"charge":0,
"formula":"C2H6O",
"notes":{
"original_bigg_ids":[
"etoh_e"
]
},
"annotation":{
"bigg.metabolite":[
"etoh"
],
"biocyc":[
"META:ETOH"
],
"chebi":[
"CHEBI:42377",
"CHEBI:23978",
"CHEBI:30880",
"CHEBI:16236",
"CHEBI:52092",
"CHEBI:30878",
"CHEBI:4879",
"CHEBI:44594",
"CHEBI:14222"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a354fd-5003-4b7b-b11b-f54204aea384",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/f89efe7c-1a6a-4d21-b99c-e3e1070a8062",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/56e18a05-c059-433a-94f6-0e26c01b010f",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/9fb1fbdf-101b-4b82-a596-d2f52c870e4f"
],
"hmdb":[
"HMDB00108"
],
"inchi_key":[
"LFQSCWFLJHTTHZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00469"
],
"kegg.drug":[
"D06542",
"D02798",
"D00068",
"D04855"
],
"metanetx.chemical":[
"MNXM303"
],
"reactome.compound":[
"113748",
"30203"
],
"sabiork":[
"56"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00363"
]
}
},
{
"id":"dgmp_e",
"name":"DGMP C10H12N5O7P",
"compartment":"e",
"charge":-2,
"formula":"C10H12N5O7P",
"notes":{
"original_bigg_ids":[
"dgmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"dgmp"
],
"biocyc":[
"META:DGMP"
],
"chebi":[
"CHEBI:57673",
"CHEBI:16192",
"CHEBI:42726",
"CHEBI:41902",
"CHEBI:42733",
"CHEBI:47449",
"CHEBI:42676",
"CHEBI:19246",
"CHEBI:14074",
"CHEBI:10496",
"CHEBI:41939",
"CHEBI:41944",
"CHEBI:45049"
],
"inchi_key":[
"LTFMZDNNPPEQNG-KVQBGUIXSA-L"
],
"kegg.compound":[
"C00362"
],
"metanetx.chemical":[
"MNXM546"
],
"reactome.compound":[
"500071"
],
"sabiork":[
"64"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00296"
]
}
},
{
"id":"dump_c",
"name":"DUMP C9H11N2O8P",
"compartment":"c",
"charge":-2,
"formula":"C9H11N2O8P",
"notes":{
"original_bigg_ids":[
"dump_c"
]
},
"annotation":{
"bigg.metabolite":[
"dump"
],
"biocyc":[
"META:DUMP"
],
"chebi":[
"CHEBI:19263",
"CHEBI:14094",
"CHEBI:46288",
"CHEBI:246422",
"CHEBI:47722",
"CHEBI:17622",
"CHEBI:42245",
"CHEBI:46286",
"CHEBI:10532"
],
"hmdb":[
"HMDB01409"
],
"inchi_key":[
"JSRLJPSBLDHEIO-SHYZEUOFSA-L"
],
"kegg.compound":[
"C00365"
],
"metanetx.chemical":[
"MNXM234"
],
"reactome.compound":[
"109382",
"500742"
],
"sabiork":[
"1334"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00299"
]
}
},
{
"id":"dgsn_p",
"name":"Deoxyguanosine",
"compartment":"p",
"charge":0,
"formula":"C10H13N5O4",
"notes":{
"original_bigg_ids":[
"dgsn_p"
]
},
"annotation":{
"bigg.metabolite":[
"dgsn"
],
"biocyc":[
"META:DEOXYGUANOSINE"
],
"chebi":[
"CHEBI:14116",
"CHEBI:23624",
"CHEBI:42667",
"CHEBI:42874",
"CHEBI:17172",
"CHEBI:42867",
"CHEBI:4412",
"CHEBI:42987",
"CHEBI:19244"
],
"hmdb":[
"HMDB00085"
],
"inchi_key":[
"YKBGVTZYEHREMT-KVQBGUIXSA-N"
],
"kegg.compound":[
"C00330"
],
"metanetx.chemical":[
"MNXM647"
],
"sabiork":[
"1869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00277"
]
}
},
{
"id":"ura_c",
"name":"Uracil",
"compartment":"c",
"charge":0,
"formula":"C4H4N2O2",
"notes":{
"original_bigg_ids":[
"ura_c"
]
},
"annotation":{
"bigg.metabolite":[
"ura"
],
"biocyc":[
"META:URACIL"
],
"chebi":[
"CHEBI:27210",
"CHEBI:43254",
"CHEBI:15288",
"CHEBI:46375",
"CHEBI:17568",
"CHEBI:9882"
],
"hmdb":[
"HMDB00300"
],
"inchi_key":[
"ISAKRJDGNUQOIC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00106"
],
"kegg.drug":[
"D00027",
"D09776"
],
"metanetx.chemical":[
"MNXM158"
],
"reactome.compound":[
"83962"
],
"sabiork":[
"61"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00092"
]
}
},
{
"id":"dgsn_c",
"name":"Deoxyguanosine",
"compartment":"c",
"charge":0,
"formula":"C10H13N5O4",
"notes":{
"original_bigg_ids":[
"dgsn_c"
]
},
"annotation":{
"bigg.metabolite":[
"dgsn"
],
"biocyc":[
"META:DEOXYGUANOSINE"
],
"chebi":[
"CHEBI:14116",
"CHEBI:23624",
"CHEBI:42667",
"CHEBI:42874",
"CHEBI:17172",
"CHEBI:42867",
"CHEBI:4412",
"CHEBI:42987",
"CHEBI:19244"
],
"hmdb":[
"HMDB00085"
],
"inchi_key":[
"YKBGVTZYEHREMT-KVQBGUIXSA-N"
],
"kegg.compound":[
"C00330"
],
"metanetx.chemical":[
"MNXM647"
],
"sabiork":[
"1869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00277"
]
}
},
{
"id":"2dr1p_c",
"name":"2-Deoxy-D-ribose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O7P",
"notes":{
"original_bigg_ids":[
"2dr1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dr1p"
],
"biocyc":[
"META:DEOXY-D-RIBOSE-1-PHOSPHATE"
],
"chebi":[
"CHEBI:28542",
"CHEBI:1081",
"CHEBI:11563",
"CHEBI:19558",
"CHEBI:58576",
"CHEBI:57259"
],
"hmdb":[
"HMDB01351"
],
"inchi_key":[
"KBDKAJNTYKVSEK-VPENINKCSA-L"
],
"kegg.compound":[
"C00672"
],
"metanetx.chemical":[
"MNXM789"
],
"reactome.compound":[
"112032"
],
"sabiork":[
"1345"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00509",
"cpd26845"
]
}
},
{
"id":"chitob_e",
"name":"Chitobiose C16H28N2O11",
"compartment":"e",
"charge":0,
"formula":"C16H28N2O11",
"notes":{
"original_bigg_ids":[
"chitob_e"
]
},
"annotation":{
"bigg.metabolite":[
"chitob"
],
"biocyc":[
"META:CHITOBIOSE"
],
"chebi":[
"CHEBI:701011",
"CHEBI:3597",
"CHEBI:28681"
],
"hmdb":[
"HMDB62702"
],
"inchi_key":[
"CDOJPCSDOXYJJF-CBTAGEKQSA-N"
],
"kegg.compound":[
"C01674"
],
"kegg.glycan":[
"G10336"
],
"metanetx.chemical":[
"MNXM1680"
],
"sabiork":[
"5722"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01157"
]
}
},
{
"id":"dgsn_e",
"name":"Deoxyguanosine",
"compartment":"e",
"charge":0,
"formula":"C10H13N5O4",
"notes":{
"original_bigg_ids":[
"dgsn_e"
]
},
"annotation":{
"bigg.metabolite":[
"dgsn"
],
"biocyc":[
"META:DEOXYGUANOSINE"
],
"chebi":[
"CHEBI:14116",
"CHEBI:23624",
"CHEBI:42667",
"CHEBI:42874",
"CHEBI:17172",
"CHEBI:42867",
"CHEBI:4412",
"CHEBI:42987",
"CHEBI:19244"
],
"hmdb":[
"HMDB00085"
],
"inchi_key":[
"YKBGVTZYEHREMT-KVQBGUIXSA-N"
],
"kegg.compound":[
"C00330"
],
"metanetx.chemical":[
"MNXM647"
],
"sabiork":[
"1869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00277"
]
}
},
{
"id":"pydxn_e",
"name":"Pyridoxine",
"compartment":"e",
"charge":0,
"formula":"C8H11NO3",
"notes":{
"original_bigg_ids":[
"pydxn_e"
]
},
"annotation":{
"bigg.metabolite":[
"pydxn"
],
"biocyc":[
"META:PYRIDOXINE"
],
"chebi":[
"CHEBI:14981",
"CHEBI:26429",
"CHEBI:16709",
"CHEBI:8671"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/344a84bd-2fbd-4e3b-903e-556786d111e2"
],
"hmdb":[
"HMDB02075",
"HMDB00239"
],
"inchi_key":[
"LXNHXLLTXMVWPM-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00314"
],
"kegg.drug":[
"D08454"
],
"metanetx.chemical":[
"MNXM419"
],
"reactome.compound":[
"965053"
],
"sabiork":[
"2015"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00263"
]
}
},
{
"id":"pydx_e",
"name":"Pyridoxal",
"compartment":"e",
"charge":0,
"formula":"C8H9NO3",
"notes":{
"original_bigg_ids":[
"pydx_e"
]
},
"annotation":{
"bigg.metabolite":[
"pydx"
],
"biocyc":[
"META:PYRIDOXAL"
],
"chebi":[
"CHEBI:45112",
"CHEBI:131530",
"CHEBI:14976",
"CHEBI:26423",
"CHEBI:17310",
"CHEBI:8667"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/049709c3-768e-468f-b435-40e990942002"
],
"hmdb":[
"HMDB01545"
],
"inchi_key":[
"RADKZDMFGJYCBB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00250"
],
"metanetx.chemical":[
"MNXM311"
],
"reactome.compound":[
"965131"
],
"sabiork":[
"1991"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00215"
]
}
},
{
"id":"duri_p",
"name":"Deoxyuridine",
"compartment":"p",
"charge":0,
"formula":"C9H12N2O5",
"notes":{
"original_bigg_ids":[
"duri_p"
]
},
"annotation":{
"bigg.metabolite":[
"duri"
],
"biocyc":[
"META:DEOXYURIDINE"
],
"chebi":[
"CHEBI:46293",
"CHEBI:14123",
"CHEBI:29113",
"CHEBI:46289",
"CHEBI:4434",
"CHEBI:23640",
"CHEBI:19261",
"CHEBI:46165",
"CHEBI:42178",
"CHEBI:11398",
"CHEBI:16450",
"CHEBI:11572"
],
"hmdb":[
"HMDB00012"
],
"inchi_key":[
"MXHRCPNRJAMMIM-SHYZEUOFSA-N"
],
"kegg.compound":[
"C00526"
],
"metanetx.chemical":[
"MNXM492"
],
"reactome.compound":[
"500430"
],
"sabiork":[
"2074"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00412"
]
}
},
{
"id":"duri_e",
"name":"Deoxyuridine",
"compartment":"e",
"charge":0,
"formula":"C9H12N2O5",
"notes":{
"original_bigg_ids":[
"duri_e"
]
},
"annotation":{
"bigg.metabolite":[
"duri"
],
"biocyc":[
"META:DEOXYURIDINE"
],
"chebi":[
"CHEBI:46293",
"CHEBI:14123",
"CHEBI:29113",
"CHEBI:46289",
"CHEBI:4434",
"CHEBI:23640",
"CHEBI:19261",
"CHEBI:46165",
"CHEBI:42178",
"CHEBI:11398",
"CHEBI:16450",
"CHEBI:11572"
],
"hmdb":[
"HMDB00012"
],
"inchi_key":[
"MXHRCPNRJAMMIM-SHYZEUOFSA-N"
],
"kegg.compound":[
"C00526"
],
"metanetx.chemical":[
"MNXM492"
],
"reactome.compound":[
"500430"
],
"sabiork":[
"2074"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00412"
]
}
},
{
"id":"3mob_c",
"name":"3-Methyl-2-oxobutanoate",
"compartment":"c",
"charge":-1,
"formula":"C5H7O3",
"notes":{
"original_bigg_ids":[
"3mob_c"
]
},
"annotation":{
"bigg.metabolite":[
"3mob"
],
"biocyc":[
"META:2-KETO-ISOVALERATE"
],
"chebi":[
"CHEBI:11851",
"CHEBI:43714",
"CHEBI:132177",
"CHEBI:20115",
"CHEBI:1584",
"CHEBI:16530"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/dee66401-4b7f-4203-8ee3-fa61f1f45f03"
],
"hmdb":[
"HMDB04260",
"HMDB00019"
],
"inchi_key":[
"QHKABHOOEWYVLI-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00141"
],
"lipidmaps":[
"LMFA01020274"
],
"metanetx.chemical":[
"MNXM238"
],
"sabiork":[
"1945"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00123"
]
}
},
{
"id":"dxyl5p_c",
"name":"1-deoxy-D-xylulose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O7P",
"notes":{
"original_bigg_ids":[
"dxyl5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"dxyl5p"
],
"biocyc":[
"META:DEOXYXYLULOSE-5P"
],
"chebi":[
"CHEBI:57792",
"CHEBI:11254",
"CHEBI:16493",
"CHEBI:622"
],
"hmdb":[
"HMDB01213"
],
"inchi_key":[
"AJPADPZSRRUGHI-RFZPGFLSSA-L"
],
"kegg.compound":[
"C11437"
],
"metanetx.chemical":[
"MNXM622"
],
"sabiork":[
"13504"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08289"
]
}
},
{
"id":"2me4p_c",
"name":"2-C-methyl-D-erythritol 4-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H11O7P",
"notes":{
"original_bigg_ids":[
"2me4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2me4p"
],
"biocyc":[
"META:2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE"
],
"chebi":[
"CHEBI:58262",
"CHEBI:17764",
"CHEBI:11483",
"CHEBI:1030"
],
"inchi_key":[
"XMWHRVNVKDKBRG-UHNVWZDZSA-L"
],
"kegg.compound":[
"C11434"
],
"metanetx.chemical":[
"MNXM1626"
],
"sabiork":[
"13501"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08286"
]
}
},
{
"id":"3hcinnm_e",
"name":"3-hydroxycinnamic acid",
"compartment":"e",
"charge":-1,
"formula":"C9H7O3",
"notes":{
"original_bigg_ids":[
"3hcinnm_e"
]
},
"annotation":{
"bigg.metabolite":[
"3hcinnm"
],
"biocyc":[
"META:CPD-10797"
],
"chebi":[
"CHEBI:47925",
"CHEBI:32357",
"CHEBI:47927",
"CHEBI:47928"
],
"hmdb":[
"HMDB62774",
"HMDB01713"
],
"inchi_key":[
"KKSDGJDHHZEWEP-SNAWJCMRSA-M"
],
"kegg.compound":[
"C12621"
],
"metanetx.chemical":[
"MNXM1799"
],
"sabiork":[
"27751",
"14652"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd09252"
]
}
},
{
"id":"3hpppn_e",
"name":"3-(3-hydroxy-phenyl)propionate",
"compartment":"e",
"charge":-1,
"formula":"C9H9O3",
"notes":{
"original_bigg_ids":[
"3hpppn_e"
]
},
"annotation":{
"bigg.metabolite":[
"3hpppn"
],
"biocyc":[
"META:3-HYDROXYPHENYL-PROPIONATE"
],
"chebi":[
"CHEBI:57277",
"CHEBI:1427"
],
"hmdb":[
"HMDB00375"
],
"inchi_key":[
"QVWAEZJXDYOKEH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C11457"
],
"metanetx.chemical":[
"MNXM1634"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08304"
]
}
},
{
"id":"23dhmb_c",
"name":"(R)-2,3-Dihydroxy-3-methylbutanoate",
"compartment":"c",
"charge":-1,
"formula":"C5H9O4",
"notes":{
"original_bigg_ids":[
"23dhmb_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhmb"
],
"biocyc":[
"META:CPD-13357"
],
"chebi":[
"CHEBI:10966",
"CHEBI:18645",
"CHEBI:49072",
"CHEBI:15684",
"CHEBI:305"
],
"hmdb":[
"HMDB12141"
],
"inchi_key":[
"JTEYKUFKXGDTEU-VKHMYHEASA-M"
],
"kegg.compound":[
"C04272"
],
"lipidmaps":[
"LMFA01050453"
],
"metanetx.chemical":[
"MNXM114097"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19030"
]
}
},
{
"id":"ag_e",
"name":"Silver",
"compartment":"e",
"charge":1,
"formula":"Ag",
"notes":{
"original_bigg_ids":[
"ag_e"
]
},
"annotation":{
"bigg.metabolite":[
"ag"
],
"biocyc":[
"META:AG+"
],
"chebi":[
"CHEBI:49467",
"CHEBI:30051",
"CHEBI:49468"
],
"hmdb":[
"HMDB02659"
],
"inchi_key":[
"FOIXSVOLVBLSDH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06710"
],
"metanetx.chemical":[
"MNXM5928"
],
"sabiork":[
"45"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04100"
]
}
},
{
"id":"enter_e",
"name":"Enterochelin",
"compartment":"e",
"charge":0,
"formula":"C30H27N3O15",
"notes":{
"original_bigg_ids":[
"enter_e"
]
},
"annotation":{
"bigg.metabolite":[
"enter"
],
"biocyc":[
"META:ENTEROBACTIN"
],
"chebi":[
"CHEBI:4799",
"CHEBI:38150",
"CHEBI:28855",
"CHEBI:77805",
"CHEBI:23923"
],
"hmdb":[
"HMDB32199"
],
"inchi_key":[
"SERBHKJMVBATSJ-BZSNNMDCSA-M"
],
"kegg.compound":[
"C05821"
],
"metanetx.chemical":[
"MNXM883"
],
"reactome.compound":[
"1222366"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03453"
]
}
},
{
"id":"dxyl_c",
"name":"1-deoxy-D-xylulose",
"compartment":"c",
"charge":0,
"formula":"C5H10O4",
"notes":{
"original_bigg_ids":[
"dxyl_c"
]
},
"annotation":{
"bigg.metabolite":[
"dxyl"
],
"biocyc":[
"META:CPD-1093"
],
"chebi":[
"CHEBI:19038",
"CHEBI:621",
"CHEBI:28354"
],
"hmdb":[
"HMDB01292"
],
"inchi_key":[
"IGUZJYCAXLYZEE-RFZPGFLSSA-N"
],
"kegg.compound":[
"C06257"
],
"metanetx.chemical":[
"MNXM2454"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03738"
]
}
},
{
"id":"lac__D_p",
"name":"D-Lactate",
"compartment":"p",
"charge":-1,
"formula":"C3H5O3",
"notes":{
"original_bigg_ids":[
"lac_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"lac__D"
],
"biocyc":[
"META:D-LACTATE"
],
"chebi":[
"CHEBI:16004",
"CHEBI:341",
"CHEBI:18684",
"CHEBI:43701",
"CHEBI:11001",
"CHEBI:42111",
"CHEBI:42105"
],
"hmdb":[
"HMDB01311",
"HMDB00171"
],
"inchi_key":[
"JVTAAEKCZFNVCJ-UWTATZPHSA-M"
],
"kegg.compound":[
"C00256"
],
"metanetx.chemical":[
"MNXM285"
],
"sabiork":[
"1997",
"2284"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00221"
]
}
},
{
"id":"23dhmp_c",
"name":"(R)-2,3-Dihydroxy-3-methylpentanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H11O4",
"notes":{
"original_bigg_ids":[
"23dhmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhmp"
],
"biocyc":[
"META:1-KETO-2-METHYLVALERATE"
],
"chebi":[
"CHEBI:18646",
"CHEBI:49258",
"CHEBI:306",
"CHEBI:27512"
],
"hmdb":[
"HMDB12140"
],
"inchi_key":[
"PDGXJDXVGMHUIR-UJURSFKZSA-M"
],
"kegg.compound":[
"C06007"
],
"lipidmaps":[
"LMFA01050452"
],
"metanetx.chemical":[
"MNXM1202"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19046"
]
}
},
{
"id":"f6p_e",
"name":"D-Fructose 6-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"f6p_e"
]
},
"annotation":{
"bigg.metabolite":[
"f6p"
],
"biocyc":[
"META:FRUCTOSE-6P"
],
"chebi":[
"CHEBI:16084",
"CHEBI:12352",
"CHEBI:57634",
"CHEBI:22768",
"CHEBI:10375",
"CHEBI:42378"
],
"hmdb":[
"HMDB03971"
],
"inchi_key":[
"BGWGXPAPYGQALX-ARQDHWQXSA-L"
],
"kegg.compound":[
"C05345"
],
"metanetx.chemical":[
"MNXM89621"
],
"sabiork":[
"25"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19035"
]
}
},
{
"id":"h2_e",
"name":"Hydrogen",
"compartment":"e",
"charge":0,
"formula":"H2",
"notes":{
"original_bigg_ids":[
"h2_e"
]
},
"annotation":{
"bigg.metabolite":[
"h2"
],
"biocyc":[
"META:HYDROGEN-MOLECULE"
],
"chebi":[
"CHEBI:18276",
"CHEBI:29298",
"CHEBI:29299",
"CHEBI:13350",
"CHEBI:29294",
"CHEBI:25363",
"CHEBI:5785"
],
"hmdb":[
"HMDB01362"
],
"inchi_key":[
"UFHFLCQGNIYNRP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00282"
],
"metanetx.chemical":[
"MNXM195"
],
"reactome.compound":[
"113555"
],
"sabiork":[
"5030"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11640"
]
}
},
{
"id":"fald_e",
"name":"Formaldehyde",
"compartment":"e",
"charge":0,
"formula":"CH2O",
"notes":{
"original_bigg_ids":[
"fald_e"
]
},
"annotation":{
"bigg.metabolite":[
"fald"
],
"biocyc":[
"META:FORMALDEHYDE",
"META:CARBONYL-GROUP"
],
"chebi":[
"CHEBI:16842",
"CHEBI:337763",
"CHEBI:24077",
"CHEBI:14274",
"CHEBI:5142"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/71fc9221-3497-43e5-963c-ecd5390cc239",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/4103a49c-b6c5-4db6-aef3-65b68fd2f6da",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8ee6f55a-4488-4606-b65f-5aead102ccfc"
],
"hmdb":[
"HMDB01426"
],
"inchi_key":[
"WSFSSNUMVMOOMR-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00067"
],
"kegg.drug":[
"D00017"
],
"metanetx.chemical":[
"MNXM56"
],
"reactome.compound":[
"143501",
"29478",
"879250",
"6797920"
],
"sabiork":[
"1928"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00055"
]
}
},
{
"id":"fe2_e",
"name":"Fe2+ mitochondria",
"compartment":"e",
"charge":2,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe2_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe2"
],
"biocyc":[
"META:FE+2"
],
"chebi":[
"CHEBI:29033",
"CHEBI:49599",
"CHEBI:13321",
"CHEBI:21129",
"CHEBI:13319",
"CHEBI:24876",
"CHEBI:34754"
],
"hmdb":[
"HMDB00692"
],
"inchi_key":[
"CWYNVVGOOAEACU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14818"
],
"metanetx.chemical":[
"MNXM111"
],
"sabiork":[
"1275"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10515"
]
}
},
{
"id":"lac__D_e",
"name":"D-Lactate",
"compartment":"e",
"charge":-1,
"formula":"C3H5O3",
"notes":{
"original_bigg_ids":[
"lac_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"lac__D"
],
"biocyc":[
"META:D-LACTATE"
],
"chebi":[
"CHEBI:16004",
"CHEBI:341",
"CHEBI:18684",
"CHEBI:43701",
"CHEBI:11001",
"CHEBI:42111",
"CHEBI:42105"
],
"hmdb":[
"HMDB01311",
"HMDB00171"
],
"inchi_key":[
"JVTAAEKCZFNVCJ-UWTATZPHSA-M"
],
"kegg.compound":[
"C00256"
],
"metanetx.chemical":[
"MNXM285"
],
"sabiork":[
"1997",
"2284"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00221"
]
}
},
{
"id":"4per_c",
"name":"4-Phospho-D-erythronate",
"compartment":"c",
"charge":-3,
"formula":"C4H6O8P",
"notes":{
"original_bigg_ids":[
"4per_c"
]
},
"annotation":{
"bigg.metabolite":[
"4per"
],
"biocyc":[
"META:ERYTHRONATE-4P"
],
"chebi":[
"CHEBI:49055",
"CHEBI:58766",
"CHEBI:41926",
"CHEBI:49003",
"CHEBI:1924"
],
"inchi_key":[
"ZCZXOHUILRHRQJ-PWNYCUMCSA-K"
],
"kegg.compound":[
"C03393"
],
"metanetx.chemical":[
"MNXM1407"
],
"sabiork":[
"6597"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02147"
]
}
},
{
"id":"eca4colipa_e",
"name":"(enterobacterial common antigen)x4 core oligosaccharide lipid A",
"compartment":"e",
"charge":-15,
"formula":"C272H447N14O160P4",
"notes":{
"original_bigg_ids":[
"eca4colipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"eca4colipa"
],
"inchi_key":[
"DZEXDGYTOKBZIY-GVBMLQGBSA-C"
],
"metanetx.chemical":[
"MNXM91786"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15457"
]
}
},
{
"id":"fe3dcit_e",
"name":"Fe(III)dicitrate",
"compartment":"e",
"charge":-3,
"formula":"C12H10FeO14",
"notes":{
"original_bigg_ids":[
"fe3dcit_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe3dcit"
],
"kegg.compound":[
"C06229"
],
"metanetx.chemical":[
"MNXM146388"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03725"
]
}
},
{
"id":"h2o2_e",
"name":"Hydrogen peroxide",
"compartment":"e",
"charge":0,
"formula":"H2O2",
"notes":{
"original_bigg_ids":[
"h2o2_e"
]
},
"annotation":{
"bigg.metabolite":[
"h2o2"
],
"biocyc":[
"META:HYDROGEN-PEROXIDE"
],
"chebi":[
"CHEBI:29192",
"CHEBI:44785",
"CHEBI:13355",
"CHEBI:13354",
"CHEBI:29370",
"CHEBI:24637",
"CHEBI:44812",
"CHEBI:5586",
"CHEBI:25940",
"CHEBI:44782",
"CHEBI:16240"
],
"hmdb":[
"HMDB03125",
"HMDB06491"
],
"inchi_key":[
"MHAJPDPJQMAIIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00027"
],
"kegg.drug":[
"D00008"
],
"metanetx.chemical":[
"MNXM22"
],
"reactome.compound":[
"1614617",
"29408",
"351629",
"189481",
"113575"
],
"sabiork":[
"1909"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00025"
]
}
},
{
"id":"fe3dhbzs_e",
"name":"Ferric 2,3-dihydroxybenzoylserine",
"compartment":"e",
"charge":2,
"formula":"C10FeH11NO6",
"notes":{
"original_bigg_ids":[
"fe3dhbzs_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe3dhbzs"
],
"inchi_key":[
"IHUQSEJNRLOEKL-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM5748"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15460"
]
}
},
{
"id":"eca4colipa_p",
"name":"(enterobacterial common antigen)x4 core oligosaccharide lipid A",
"compartment":"p",
"charge":-15,
"formula":"C272H447N14O160P4",
"notes":{
"original_bigg_ids":[
"eca4colipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"eca4colipa"
],
"inchi_key":[
"DZEXDGYTOKBZIY-GVBMLQGBSA-C"
],
"metanetx.chemical":[
"MNXM91786"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15457"
]
}
},
{
"id":"h2o_e",
"name":"H2O H2O",
"compartment":"e",
"charge":0,
"formula":"H2O",
"notes":{
"original_bigg_ids":[
"h2o_e"
]
},
"annotation":{
"bigg.metabolite":[
"h2o"
],
"biocyc":[
"META:CPD-15815",
"META:OXONIUM",
"META:HYDROXYL-GROUP",
"META:WATER",
"META:OH"
],
"chebi":[
"CHEBI:13352",
"CHEBI:30490",
"CHEBI:43228",
"CHEBI:33813",
"CHEBI:44292",
"CHEBI:44641",
"CHEBI:27313",
"CHEBI:42043",
"CHEBI:44819",
"CHEBI:29356",
"CHEBI:5594",
"CHEBI:10743",
"CHEBI:15377",
"CHEBI:42857",
"CHEBI:13365",
"CHEBI:29412",
"CHEBI:16234",
"CHEBI:13419",
"CHEBI:5585",
"CHEBI:44701"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/799908db-b8c9-4982-86cb-1f225e2ad08c",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e7f34a8e-cded-4793-b6d5-792335b38636",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/969d0227-3069-4e44-9525-7ae7bad84170"
],
"hmdb":[
"HMDB02111",
"HMDB01039"
],
"inchi_key":[
"XLYOFNOQVPJJNP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00001",
"C01328"
],
"kegg.drug":[
"D00001",
"D06322"
],
"metanetx.chemical":[
"MNXM2"
],
"reactome.compound":[
"113521",
"141343",
"2022884",
"5278291",
"29356",
"189422",
"5668574",
"5693747",
"109276",
"113519",
"1605715",
"8851517",
"113518",
"351603"
],
"sabiork":[
"40"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27222",
"cpd00001",
"cpd15275"
]
}
},
{
"id":"eca4und_p",
"name":"(enterobacterial common antigen)x4 undecaprenyl-diphosphate",
"compartment":"p",
"charge":-6,
"formula":"C151H234N12O67P2",
"notes":{
"original_bigg_ids":[
"eca4und_p"
]
},
"annotation":{
"bigg.metabolite":[
"eca4und"
],
"inchi_key":[
"CVYQIROAIKSYLV-HBQGRVRBSA-H"
],
"metanetx.chemical":[
"MNXM6545"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15458"
]
}
},
{
"id":"fe3hox_e",
"name":"Fe(III)hydroxamate",
"compartment":"e",
"charge":0,
"formula":"C9H18O6N3Fe",
"notes":{
"original_bigg_ids":[
"fe3hox_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe3hox"
],
"biocyc":[
"META:CPD0-2114"
],
"chebi":[
"CHEBI:21131",
"CHEBI:4992",
"CHEBI:28163"
],
"kegg.compound":[
"C06227"
],
"metanetx.chemical":[
"MNXM57764"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12843"
]
}
},
{
"id":"h2s_e",
"name":"Hydrogen sulfide",
"compartment":"e",
"charge":0,
"formula":"H2S",
"notes":{
"original_bigg_ids":[
"h2s_e"
]
},
"annotation":{
"bigg.metabolite":[
"h2s"
],
"biocyc":[
"META:CPD-846",
"META:CPD-7046",
"META:HS"
],
"chebi":[
"CHEBI:14414",
"CHEBI:43058",
"CHEBI:5787",
"CHEBI:13356",
"CHEBI:30488",
"CHEBI:24639",
"CHEBI:29919",
"CHEBI:16136",
"CHEBI:15138",
"CHEBI:45489"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6fca0a43-b0f0-41dd-a454-c7880342d6be",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/83aab241-d065-45ef-a799-98fdad5bcf04",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/0b237b94-a6df-4792-8866-246b2230eef0",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6715c2d9-35cb-48df-aa0b-611368e2fb0a"
],
"hmdb":[
"HMDB00598",
"HMDB03276"
],
"inchi_key":[
"RWSOTUBLDIXVET-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00283"
],
"metanetx.chemical":[
"MNXM89582"
],
"reactome.compound":[
"1663154",
"1614532",
"1655881"
],
"sabiork":[
"2007"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd24697",
"cpd00239"
]
}
},
{
"id":"fe3hox_un_e",
"name":"Fe(III)hydoxamate, unloaded",
"compartment":"e",
"charge":-3,
"formula":"C9H18O6N3",
"notes":{
"original_bigg_ids":[
"fe3hox_un_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe3hox_un"
],
"biocyc":[
"META:CPD0-2175"
],
"metanetx.chemical":[
"MNXM90823"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15461"
]
}
},
{
"id":"udcpdp_p",
"name":"Undecaprenyl diphosphate",
"compartment":"p",
"charge":-3,
"formula":"C55H89O7P2",
"notes":{
"original_bigg_ids":[
"udcpdp_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcpdp"
],
"biocyc":[
"META:CPD-9649"
],
"chebi":[
"CHEBI:27192",
"CHEBI:53042",
"CHEBI:17047",
"CHEBI:9863",
"CHEBI:57995",
"CHEBI:15284"
],
"hmdb":[
"HMDB01469"
],
"inchi_key":[
"NTXGVHCCXVHYCL-RDQGWRCRSA-K"
],
"lipidmaps":[
"LMPR03030004"
],
"metanetx.chemical":[
"MNXM5043"
],
"sabiork":[
"1757"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25775"
]
}
},
{
"id":"h_e",
"name":"H+",
"compartment":"e",
"charge":1,
"formula":"H",
"notes":{
"original_bigg_ids":[
"h_e"
]
},
"annotation":{
"bigg.metabolite":[
"h"
],
"biocyc":[
"META:PROTON"
],
"chebi":[
"CHEBI:5584",
"CHEBI:13357",
"CHEBI:15378",
"CHEBI:10744"
],
"hmdb":[
"HMDB59597"
],
"inchi_key":[
"GPRLSGONYQIRFK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00080"
],
"metanetx.chemical":[
"MNXM1"
],
"reactome.compound":[
"2000349",
"425978",
"74722",
"428040",
"427899",
"428548",
"156540",
"70106",
"425969",
"1132304",
"5668577",
"1470067",
"163953",
"193465",
"113529",
"351626",
"425999",
"194688",
"374900",
"2872447",
"372511"
],
"sabiork":[
"39"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00067"
]
}
},
{
"id":"eca2und_p",
"name":"(enterobacterial common antigen)x2 undecaprenyl-diphosphate",
"compartment":"p",
"charge":-4,
"formula":"C103H162N6O37P2",
"notes":{
"original_bigg_ids":[
"eca2und_p"
]
},
"annotation":{
"bigg.metabolite":[
"eca2und"
],
"inchi_key":[
"QGEVVARZDHTYSR-JPDQSREWSA-J"
],
"metanetx.chemical":[
"MNXM31479"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15455"
]
}
},
{
"id":"fecrm_e",
"name":"Ferrichrome",
"compartment":"e",
"charge":0,
"formula":"C27H42FeN9O12",
"notes":{
"original_bigg_ids":[
"fecrm_e"
]
},
"annotation":{
"bigg.metabolite":[
"fecrm"
],
"biocyc":[
"META:CPD0-2241"
],
"chebi":[
"CHEBI:5019"
],
"inchi_key":[
"GGUNGDGGXMHBMJ-OCIDDWSYSA-N"
],
"kegg.compound":[
"C06228"
],
"metanetx.chemical":[
"MNXM2825"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03724"
]
}
},
{
"id":"fecrm_un_e",
"name":"Ferrichrome minus Fe(III)",
"compartment":"e",
"charge":-3,
"formula":"C27H42N9O12",
"notes":{
"original_bigg_ids":[
"fecrm_un_e"
]
},
"annotation":{
"bigg.metabolite":[
"fecrm_un"
],
"biocyc":[
"META:CPD0-2205"
],
"inchi_key":[
"ZZDYFKJSJLUQON-UFYCRDLUSA-N"
],
"metanetx.chemical":[
"MNXM53290"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15462"
]
}
},
{
"id":"hacolipa_e",
"name":"Hepta-acylated core oligosaccharide lipid A (E. coli)",
"compartment":"e",
"charge":-11,
"formula":"C192H333N2O101P4",
"notes":{
"original_bigg_ids":[
"hacolipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"hacolipa"
],
"metanetx.chemical":[
"MNXM11799"
],
"sbo":"SBO:0000247"
}
},
{
"id":"feenter_e",
"name":"Fe-enterobactin",
"compartment":"e",
"charge":3,
"formula":"C30H27FeN3O15",
"notes":{
"original_bigg_ids":[
"feenter_e"
]
},
"annotation":{
"bigg.metabolite":[
"feenter"
],
"chebi":[
"CHEBI:4993",
"CHEBI:38151",
"CHEBI:28199",
"CHEBI:70745",
"CHEBI:21133"
],
"inchi_key":[
"NGILTSZTOFYVBF-UVJOBNTFSA-H"
],
"kegg.compound":[
"C06230"
],
"metanetx.chemical":[
"MNXM7354"
],
"reactome.compound":[
"1222421"
],
"sbo":"SBO:0000247"
}
},
{
"id":"unagamuf_p",
"name":"Undecaprenyl-diphospho N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4,6-dideoxy-D-galactose",
"compartment":"p",
"charge":-3,
"formula":"C79H126N3O22P2",
"notes":{
"original_bigg_ids":[
"unagamuf_p"
]
},
"annotation":{
"bigg.metabolite":[
"unagamuf"
],
"biocyc":[
"META:C55-PP-GLCNAC-MANNACA-FUC4NAC"
],
"inchi_key":[
"PSONHUYFSWYIME-RZVIFHIQSA-K"
],
"metanetx.chemical":[
"MNXM6160"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15582"
]
}
},
{
"id":"halipa_e",
"name":"Hepta-acylated KDO(2)-lipid (A)",
"compartment":"e",
"charge":-6,
"formula":"C126H226N2O40P2",
"notes":{
"original_bigg_ids":[
"halipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"halipa"
],
"inchi_key":[
"FKGIQBXWASHJRH-JYIPIDLLSA-J"
],
"metanetx.chemical":[
"MNXM93466"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15483"
]
}
},
{
"id":"eca3und_p",
"name":"(enterobacterial common antigen)x3 undecaprenyl-diphosphate",
"compartment":"p",
"charge":-5,
"formula":"C127H198N9O52P2",
"notes":{
"original_bigg_ids":[
"eca3und_p"
]
},
"annotation":{
"bigg.metabolite":[
"eca3und"
],
"inchi_key":[
"AEBNALYOCQHPHC-FKUZKRBFSA-I"
],
"metanetx.chemical":[
"MNXM6543"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15456"
]
}
},
{
"id":"feoxam_e",
"name":"Generic ferrioxamine-Fe-III",
"compartment":"e",
"charge":1,
"formula":"C25FeH46N6O8",
"notes":{
"original_bigg_ids":[
"feoxam_e"
]
},
"annotation":{
"bigg.metabolite":[
"feoxam"
],
"biocyc":[
"META:CPD0-2124"
],
"chebi":[
"CHEBI:5044"
],
"inchi_key":[
"SRMBQCVUAVULDJ-UHFFFAOYSA-O"
],
"kegg.compound":[
"C07597"
],
"lipidmaps":[
"LMFA08020175"
],
"metanetx.chemical":[
"MNXM162837"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04761"
]
}
},
{
"id":"hdca_e",
"name":"Hexadecanoate (n-C16:0)",
"compartment":"e",
"charge":-1,
"formula":"C16H31O2",
"notes":{
"original_bigg_ids":[
"hdca_e"
]
},
"annotation":{
"bigg.metabolite":[
"hdca"
],
"biocyc":[
"META:PALMITATE"
],
"chebi":[
"CHEBI:7896",
"CHEBI:24540",
"CHEBI:231736",
"CHEBI:15756",
"CHEBI:44952",
"CHEBI:233028",
"CHEBI:24542",
"CHEBI:14730",
"CHEBI:35978",
"CHEBI:24541",
"CHEBI:24550",
"CHEBI:29889"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc7314a1-8e9a-410f-be4f-f7d8bf32b1cb"
],
"hmdb":[
"HMDB60083",
"HMDB00220"
],
"inchi_key":[
"IPCSVZSSVZVIGE-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00249"
],
"kegg.drug":[
"D05341"
],
"lipidmaps":[
"LMFA01010046",
"LMFA01010001"
],
"metanetx.chemical":[
"MNXM108"
],
"reactome.compound":[
"2453691",
"3632881",
"76168",
"5690516",
"390435",
"426576"
],
"sabiork":[
"1990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00214"
],
"slm":[
"000000510"
]
}
},
{
"id":"feoxam_un_e",
"name":"Ferroxamine minus Fe(3)",
"compartment":"e",
"charge":-2,
"formula":"C25H46N6O8",
"notes":{
"original_bigg_ids":[
"feoxam_un_e"
]
},
"annotation":{
"bigg.metabolite":[
"feoxam_un"
],
"metanetx.chemical":[
"MNXM90827"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15463"
]
}
},
{
"id":"unagamuf_c",
"name":"Undecaprenyl-diphospho N-acetylglucosamine-N-acetylmannosaminuronate-N-acetamido-4,6-dideoxy-D-galactose",
"compartment":"c",
"charge":-3,
"formula":"C79H126N3O22P2",
"notes":{
"original_bigg_ids":[
"unagamuf_c"
]
},
"annotation":{
"bigg.metabolite":[
"unagamuf"
],
"biocyc":[
"META:C55-PP-GLCNAC-MANNACA-FUC4NAC"
],
"inchi_key":[
"PSONHUYFSWYIME-RZVIFHIQSA-K"
],
"metanetx.chemical":[
"MNXM6160"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15582"
]
}
},
{
"id":"hdcea_e",
"name":"Hexadecenoate (n-C16:1)",
"compartment":"e",
"charge":-1,
"formula":"C16H29O2",
"notes":{
"original_bigg_ids":[
"hdcea_e"
]
},
"annotation":{
"bigg.metabolite":[
"hdcea"
],
"metanetx.chemical":[
"MNXM950"
],
"sbo":"SBO:0000247"
}
},
{
"id":"for_e",
"name":"Formate",
"compartment":"e",
"charge":-1,
"formula":"CH1O2",
"notes":{
"original_bigg_ids":[
"for_e"
]
},
"annotation":{
"bigg.metabolite":[
"for"
],
"biocyc":[
"META:CPD1G-1532",
"META:CPD1G-1535",
"META:FORMATE",
"META:CPD-9845",
"META:CPD1G-1534",
"META:CARBOXYL-GROUP",
"META:CPD1G-1533"
],
"chebi":[
"CHEBI:24081",
"CHEBI:30751",
"CHEBI:15740",
"CHEBI:5145",
"CHEBI:42460",
"CHEBI:14276",
"CHEBI:24082"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a9d20ae-b6ec-40a9-93ca-1de20597b1ed",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09c1ad08-016e-4477-8840-b97a031eae23",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/bf16ab32-cb3c-4427-a65a-089ab754823e",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/34fe3cd9-9b0b-46b0-a1c5-8a66509f1919",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1d077cf2-3f9f-4163-aa49-0fca1b2b3ab3"
],
"hmdb":[
"HMDB00142"
],
"inchi_key":[
"BDAGIHXWWSANSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00058"
],
"metanetx.chemical":[
"MNXM39"
],
"reactome.compound":[
"29460",
"194712",
"389585",
"6801451"
],
"sabiork":[
"1285"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00047",
"cpd22511"
]
}
},
{
"id":"hg2_e",
"name":"Mercury  charged 2  Hg",
"compartment":"e",
"charge":2,
"formula":"Hg",
"notes":{
"original_bigg_ids":[
"hg2_e"
]
},
"annotation":{
"bigg.metabolite":[
"hg2"
],
"biocyc":[
"META:HG+2"
],
"chebi":[
"CHEBI:25200",
"CHEBI:13370",
"CHEBI:25199",
"CHEBI:16793",
"CHEBI:49640",
"CHEBI:5714"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/79a26c21-7769-4377-9880-413b45e89afe"
],
"hmdb":[
"HMDB03625"
],
"inchi_key":[
"BQPIGGFYSBELGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00703"
],
"metanetx.chemical":[
"MNXM1562"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00531"
]
}
},
{
"id":"fru_e",
"name":"D-Fructose",
"compartment":"e",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"fru_e"
]
},
"annotation":{
"bigg.metabolite":[
"fru"
],
"biocyc":[
"META:D-Fructopyranose",
"META:Fructofuranose",
"META:CPD-15382",
"META:FRU"
],
"chebi":[
"CHEBI:47424",
"CHEBI:28757",
"CHEBI:24110",
"CHEBI:20929",
"CHEBI:4119",
"CHEBI:15824",
"CHEBI:5172",
"CHEBI:24104",
"CHEBI:12923",
"CHEBI:4118",
"CHEBI:37714",
"CHEBI:37721",
"CHEBI:48095"
],
"hmdb":[
"HMDB62538"
],
"inchi_key":[
"RFSUNEUAIZKAJO-VRPWFDPXSA-N"
],
"kegg.compound":[
"C01496",
"C05003",
"C00095",
"C10906"
],
"kegg.drug":[
"D00114"
],
"metanetx.chemical":[
"MNXM175"
],
"reactome.compound":[
"189049",
"29532"
],
"sabiork":[
"25055",
"1463",
"1464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00082",
"cpd19015",
"cpd27040"
]
}
},
{
"id":"his__L_e",
"name":"L-Histidine",
"compartment":"e",
"charge":0,
"formula":"C6H9N3O2",
"notes":{
"original_bigg_ids":[
"his_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"his__L"
],
"biocyc":[
"META:HIS"
],
"chebi":[
"CHEBI:43239",
"CHEBI:32529",
"CHEBI:43048",
"CHEBI:5733",
"CHEBI:32530",
"CHEBI:27570",
"CHEBI:32531",
"CHEBI:43118",
"CHEBI:32513",
"CHEBI:15971",
"CHEBI:43190",
"CHEBI:21324",
"CHEBI:32512",
"CHEBI:32511",
"CHEBI:13117",
"CHEBI:43114",
"CHEBI:32510",
"CHEBI:6240",
"CHEBI:32532",
"CHEBI:57595",
"CHEBI:24598"
],
"hmdb":[
"HMDB00177",
"HMDB03412"
],
"inchi_key":[
"HNDVDQJCIGZPNO-YFKPBYRVSA-N"
],
"kegg.compound":[
"C00768",
"C00135"
],
"kegg.drug":[
"D00032"
],
"metanetx.chemical":[
"MNXM134"
],
"reactome.compound":[
"379695",
"29612"
],
"sabiork":[
"2151",
"81"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00119",
"cpd00572"
]
}
},
{
"id":"frulys_e",
"name":"Fructoselysine",
"compartment":"e",
"charge":1,
"formula":"C12H25N2O7",
"notes":{
"original_bigg_ids":[
"frulys_e"
]
},
"annotation":{
"bigg.metabolite":[
"frulys"
],
"biocyc":[
"META:FRUCTOSELYSINE"
],
"chebi":[
"CHEBI:24109",
"CHEBI:61393",
"CHEBI:63523"
],
"inchi_key":[
"BFSYFTQDGRDJNV-AYHFEMFVSA-O"
],
"kegg.compound":[
"C16488"
],
"metanetx.chemical":[
"MNXM1742"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15466"
]
}
},
{
"id":"spmd_e",
"name":"Spermidine",
"compartment":"e",
"charge":3,
"formula":"C7H22N3",
"notes":{
"original_bigg_ids":[
"spmd_e"
]
},
"annotation":{
"bigg.metabolite":[
"spmd"
],
"biocyc":[
"META:SPERMIDINE"
],
"chebi":[
"CHEBI:57834",
"CHEBI:15097",
"CHEBI:26732",
"CHEBI:26733",
"CHEBI:9218",
"CHEBI:45647",
"CHEBI:15095",
"CHEBI:16610"
],
"hmdb":[
"HMDB01257"
],
"inchi_key":[
"ATHGHQPFGPMSJY-UHFFFAOYSA-Q"
],
"kegg.compound":[
"C00315"
],
"metanetx.chemical":[
"MNXM124"
],
"reactome.compound":[
"204635",
"141324"
],
"sabiork":[
"3088"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00264"
]
}
},
{
"id":"hom__L_e",
"name":"L-Homoserine",
"compartment":"e",
"charge":0,
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"hom_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"hom__L"
],
"biocyc":[
"META:HOMO-SER"
],
"chebi":[
"CHEBI:57476",
"CHEBI:6246",
"CHEBI:21330",
"CHEBI:43131",
"CHEBI:15699",
"CHEBI:13123"
],
"hmdb":[
"HMDB00719"
],
"inchi_key":[
"UKAUYVFTDYCKQA-VKHMYHEASA-N"
],
"kegg.compound":[
"C00263"
],
"metanetx.chemical":[
"MNXM353"
],
"sabiork":[
"2001"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00227"
]
}
},
{
"id":"succ_e",
"name":"Succinate",
"compartment":"e",
"charge":-2,
"formula":"C4H4O4",
"notes":{
"original_bigg_ids":[
"succ_e"
]
},
"annotation":{
"bigg.metabolite":[
"succ"
],
"biocyc":[
"META:SUC"
],
"chebi":[
"CHEBI:22941",
"CHEBI:26803",
"CHEBI:15741",
"CHEBI:132287",
"CHEBI:45639",
"CHEBI:30779",
"CHEBI:15125",
"CHEBI:22943",
"CHEBI:26807",
"CHEBI:9304",
"CHEBI:90372",
"CHEBI:30031"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/cc98aff0-7f64-4db4-9d59-de961c228496",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/6377658b-03f6-4fed-a5bf-ff0f2389b693",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/600b74d3-8fe5-426d-bedf-291175bd23e4",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8fdfd425-4343-4bf2-8427-b2ffa57fdbd7"
],
"hmdb":[
"HMDB00254"
],
"inchi_key":[
"KDYFGRWQOYBRFD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00042"
],
"lipidmaps":[
"LMFA01170043"
],
"metanetx.chemical":[
"MNXM25"
],
"reactome.compound":[
"389583",
"5278787",
"159939",
"433123",
"29434",
"113536"
],
"sabiork":[
"1924"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00036"
]
}
},
{
"id":"fruur_e",
"name":"D-Fructuronate",
"compartment":"e",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"fruur_e"
]
},
"annotation":{
"bigg.metabolite":[
"fruur"
],
"biocyc":[
"META:FRUCTURONATE"
],
"chebi":[
"CHEBI:47950",
"CHEBI:59881",
"CHEBI:24113",
"CHEBI:16849",
"CHEBI:12927",
"CHEBI:20936",
"CHEBI:59863",
"CHEBI:20937",
"CHEBI:4126",
"CHEBI:24112"
],
"inchi_key":[
"PTCIWUZVDIQTOW-XDJBDKDSSA-M"
],
"kegg.compound":[
"C00905"
],
"metanetx.chemical":[
"MNXM1660"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00672",
"cpd27042"
]
}
},
{
"id":"hxa_e",
"name":"Hexanoate (n-C6:0)",
"compartment":"e",
"charge":-1,
"formula":"C6H11O2",
"notes":{
"original_bigg_ids":[
"hxa_e"
]
},
"annotation":{
"bigg.metabolite":[
"hxa"
],
"biocyc":[
"META:HEXANOATE"
],
"chebi":[
"CHEBI:14398",
"CHEBI:24571",
"CHEBI:40213",
"CHEBI:30776",
"CHEBI:17120",
"CHEBI:5702",
"CHEBI:24569"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e4df503e-0f40-4bad-8885-76774b301631"
],
"hmdb":[
"HMDB00535",
"HMDB61883"
],
"inchi_key":[
"FUZZWVXGSFPDMH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01585"
],
"lipidmaps":[
"LMFA01010006"
],
"metanetx.chemical":[
"MNXM1653"
],
"sabiork":[
"2297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01113"
],
"slm":[
"000001196"
]
}
},
{
"id":"fuc__L_e",
"name":"L-Fucose",
"compartment":"e",
"charge":0,
"formula":"C6H12O5",
"notes":{
"original_bigg_ids":[
"fuc_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"fuc__L"
],
"biocyc":[
"META:CPD-15619",
"META:L-fucoses"
],
"chebi":[
"CHEBI:48204"
],
"hmdb":[
"HMDB62489"
],
"inchi_key":[
"PNNNRSAQSRJVSB-KCDKBNATSA-N"
],
"metanetx.chemical":[
"MNXM40586"
],
"reactome.compound":[
"6784249"
],
"sbo":"SBO:0000247"
}
},
{
"id":"sucr_e",
"name":"Sucrose C12H22O11",
"compartment":"e",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"sucr_e"
]
},
"annotation":{
"bigg.metabolite":[
"sucr"
],
"biocyc":[
"META:SUCROSE"
],
"chebi":[
"CHEBI:9314",
"CHEBI:15128",
"CHEBI:17992",
"CHEBI:45795",
"CHEBI:26812"
],
"hmdb":[
"HMDB00258"
],
"inchi_key":[
"CZMRCDWAGMRECN-UGDNZRGBSA-N"
],
"kegg.compound":[
"C00089"
],
"kegg.drug":[
"D00025"
],
"kegg.glycan":[
"G00370"
],
"metanetx.chemical":[
"MNXM167"
],
"reactome.compound":[
"188980"
],
"sabiork":[
"1294"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00076"
]
}
},
{
"id":"sulfac_e",
"name":"Sulfoacetate",
"compartment":"e",
"charge":-2,
"formula":"C2H2O5S",
"notes":{
"original_bigg_ids":[
"sulfac_e"
]
},
"annotation":{
"bigg.metabolite":[
"sulfac"
],
"biocyc":[
"META:CPD-10246"
],
"chebi":[
"CHEBI:34987",
"CHEBI:49876",
"CHEBI:58824",
"CHEBI:50519"
],
"inchi_key":[
"AGGIJOLULBJGTQ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C14179"
],
"metanetx.chemical":[
"MNXM1949"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd09878"
]
}
},
{
"id":"fum_e",
"name":"Fumarate",
"compartment":"e",
"charge":-2,
"formula":"C4H2O4",
"notes":{
"original_bigg_ids":[
"fum_e"
]
},
"annotation":{
"bigg.metabolite":[
"fum"
],
"biocyc":[
"META:FUM"
],
"chebi":[
"CHEBI:36180",
"CHEBI:37155",
"CHEBI:42511",
"CHEBI:5190",
"CHEBI:18012",
"CHEBI:42743",
"CHEBI:22956",
"CHEBI:22957",
"CHEBI:24124",
"CHEBI:14284",
"CHEBI:37154",
"CHEBI:29806",
"CHEBI:22958",
"CHEBI:24122"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/709035ec-4868-4de8-9095-06428f6be14b"
],
"hmdb":[
"HMDB00134"
],
"inchi_key":[
"VZCYOOQTPOCHFL-OWOJBTEDSA-L"
],
"kegg.compound":[
"C00122"
],
"kegg.drug":[
"D02308"
],
"metanetx.chemical":[
"MNXM93"
],
"reactome.compound":[
"113588",
"29586"
],
"sabiork":[
"1910"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00106"
]
}
},
{
"id":"hxan_e",
"name":"Hypoxanthine",
"compartment":"e",
"charge":0,
"formula":"C5H4N4O",
"notes":{
"original_bigg_ids":[
"hxan_e"
]
},
"annotation":{
"bigg.metabolite":[
"hxan"
],
"biocyc":[
"META:HYPOXANTHINE"
],
"chebi":[
"CHEBI:14431",
"CHEBI:43237",
"CHEBI:5841",
"CHEBI:17368",
"CHEBI:24762"
],
"hmdb":[
"HMDB00157"
],
"inchi_key":[
"FDGQSTZJBFJUBT-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00262"
],
"metanetx.chemical":[
"MNXM213"
],
"reactome.compound":[
"113599"
],
"sabiork":[
"5528",
"1321"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00226"
]
}
},
{
"id":"g1p_e",
"name":"D-Glucose 1-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"g1p_e"
]
},
"annotation":{
"bigg.metabolite":[
"g1p"
],
"biocyc":[
"META:D-glucose-1-phosphates",
"META:GLC-1-P"
],
"chebi":[
"CHEBI:10246",
"CHEBI:42623",
"CHEBI:12967",
"CHEBI:12320",
"CHEBI:29042",
"CHEBI:4169",
"CHEBI:58601",
"CHEBI:57629",
"CHEBI:16077",
"CHEBI:21001",
"CHEBI:12970",
"CHEBI:21004"
],
"hmdb":[
"HMDB01586",
"HMDB01306"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-GASJEMHNSA-L"
],
"kegg.compound":[
"C00103"
],
"metanetx.chemical":[
"MNXM89588"
],
"reactome.compound":[
"29548"
],
"sabiork":[
"1450",
"23742",
"1298"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00089",
"cpd28817"
]
}
},
{
"id":"tartr__L_e",
"name":"L-tartrate",
"compartment":"e",
"charge":-2,
"formula":"C4H4O6",
"notes":{
"original_bigg_ids":[
"tartr_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"tartr__L"
],
"biocyc":[
"META:TARTRATE"
],
"chebi":[
"CHEBI:15193",
"CHEBI:10961",
"CHEBI:30924",
"CHEBI:35397",
"CHEBI:35398",
"CHEBI:358",
"CHEBI:45866",
"CHEBI:18711",
"CHEBI:15671",
"CHEBI:26849",
"CHEBI:11018",
"CHEBI:18710"
],
"hmdb":[
"HMDB00956"
],
"inchi_key":[
"FEWJPZIEWOKRBE-JCYAYHJZSA-L"
],
"kegg.compound":[
"C00898"
],
"kegg.drug":[
"D00103"
],
"metanetx.chemical":[
"MNXM816"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00666"
]
}
},
{
"id":"idon__L_e",
"name":"L-Idonate",
"compartment":"e",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"idon_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"idon__L"
],
"biocyc":[
"META:L-IDONATE"
],
"chebi":[
"CHEBI:13126",
"CHEBI:17796",
"CHEBI:21336",
"CHEBI:57659",
"CHEBI:6250",
"CHEBI:21335",
"CHEBI:58494"
],
"inchi_key":[
"RGHNJXZEOKUKBD-SKNVOMKLSA-M"
],
"kegg.compound":[
"C00770"
],
"metanetx.chemical":[
"MNXM1565"
],
"sabiork":[
"5225"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00573"
]
}
},
{
"id":"taur_e",
"name":"Taurine C2H7NO3S",
"compartment":"e",
"charge":0,
"formula":"C2H7NO3S",
"notes":{
"original_bigg_ids":[
"taur_e"
]
},
"annotation":{
"bigg.metabolite":[
"taur"
],
"biocyc":[
"META:TAURINE"
],
"chebi":[
"CHEBI:32970",
"CHEBI:507393",
"CHEBI:9406",
"CHEBI:26852",
"CHEBI:15891",
"CHEBI:15195",
"CHEBI:45877"
],
"hmdb":[
"HMDB00251"
],
"inchi_key":[
"XOAAWQZATWQOTB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00245"
],
"kegg.drug":[
"D00047"
],
"metanetx.chemical":[
"MNXM282"
],
"reactome.compound":[
"193463",
"194069",
"159420"
],
"sabiork":[
"1989"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00210"
]
}
},
{
"id":"g3pc_e",
"name":"Sn-Glycero-3-phosphocholine",
"compartment":"e",
"charge":0,
"formula":"C8H20NO6P",
"notes":{
"original_bigg_ids":[
"g3pc_e"
]
},
"annotation":{
"bigg.metabolite":[
"g3pc"
],
"biocyc":[
"META:L-1-GLYCERO-PHOSPHORYLCHOLINE"
],
"chebi":[
"CHEBI:55397",
"CHEBI:76433",
"CHEBI:26697",
"CHEBI:12847",
"CHEBI:14343",
"CHEBI:10646",
"CHEBI:16870",
"CHEBI:41458",
"CHEBI:12841"
],
"inchi_key":[
"SUHOQUVVVLNYQR-MRVPVSSYSA-N"
],
"kegg.compound":[
"C00670"
],
"kegg.drug":[
"D07349"
],
"metanetx.chemical":[
"MNXM367"
],
"reactome.compound":[
"1498750"
],
"sabiork":[
"5173"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00507"
]
}
},
{
"id":"ile__L_e",
"name":"L-Isoleucine",
"compartment":"e",
"charge":0,
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"ile_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"ile__L"
],
"biocyc":[
"META:ILE"
],
"chebi":[
"CHEBI:43290",
"CHEBI:32604",
"CHEBI:43342",
"CHEBI:32605",
"CHEBI:17191",
"CHEBI:21344",
"CHEBI:13127",
"CHEBI:43366",
"CHEBI:6255",
"CHEBI:32613",
"CHEBI:32612",
"CHEBI:24898",
"CHEBI:58045"
],
"hmdb":[
"HMDB00172"
],
"inchi_key":[
"AGPKZVBTJJNPAG-WHFBIAKZSA-N"
],
"kegg.compound":[
"C00407"
],
"kegg.drug":[
"D00065"
],
"lipidmaps":[
"LMFA01100047"
],
"metanetx.chemical":[
"MNXM231"
],
"reactome.compound":[
"30102",
"113537"
],
"sabiork":[
"70",
"23116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00322"
]
}
},
{
"id":"g3pe_e",
"name":"Sn-Glycero-3-phosphoethanolamine",
"compartment":"e",
"charge":0,
"formula":"C5H14NO6P",
"notes":{
"original_bigg_ids":[
"g3pe_e"
]
},
"annotation":{
"bigg.metabolite":[
"g3pe"
],
"biocyc":[
"META:L-1-GLYCEROPHOSPHORYLETHANOL-AMINE"
],
"chebi":[
"CHEBI:57952",
"CHEBI:10647",
"CHEBI:12842",
"CHEBI:16929",
"CHEBI:26699"
],
"hmdb":[
"HMDB59660"
],
"inchi_key":[
"JZNWSCPGTDBMEW-YFKPBYRVSA-N"
],
"kegg.compound":[
"C01233"
],
"metanetx.chemical":[
"MNXM368"
],
"reactome.compound":[
"1524023"
],
"sabiork":[
"3824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00908"
]
}
},
{
"id":"tcynt_e",
"name":"Thiocyanate",
"compartment":"e",
"charge":-1,
"formula":"CNS",
"notes":{
"original_bigg_ids":[
"tcynt_e"
]
},
"annotation":{
"bigg.metabolite":[
"tcynt"
],
"biocyc":[
"META:HSCN"
],
"chebi":[
"CHEBI:29200",
"CHEBI:18022",
"CHEBI:45576",
"CHEBI:26956",
"CHEBI:24928",
"CHEBI:24926",
"CHEBI:9550",
"CHEBI:26954",
"CHEBI:15234"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e06445a5-0756-47c6-b6f7-64c74b192ecc"
],
"hmdb":[
"HMDB01453"
],
"inchi_key":[
"ZMZDMBWJUHKJPS-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01755"
],
"metanetx.chemical":[
"MNXM762"
],
"sabiork":[
"5778"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01211"
]
}
},
{
"id":"imp_e",
"name":"IMP C10H11N4O8P",
"compartment":"e",
"charge":-2,
"formula":"C10H11N4O8P",
"notes":{
"original_bigg_ids":[
"imp_e"
]
},
"annotation":{
"bigg.metabolite":[
"imp"
],
"biocyc":[
"META:IMP"
],
"chebi":[
"CHEBI:43524",
"CHEBI:13373",
"CHEBI:43528",
"CHEBI:19271",
"CHEBI:58053",
"CHEBI:12063",
"CHEBI:43611",
"CHEBI:5849",
"CHEBI:43563",
"CHEBI:12057",
"CHEBI:14457",
"CHEBI:43475",
"CHEBI:43418",
"CHEBI:17202",
"CHEBI:47501",
"CHEBI:13372"
],
"hmdb":[
"HMDB00175"
],
"inchi_key":[
"GRSZFWQUAKGDAV-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00130"
],
"metanetx.chemical":[
"MNXM125"
],
"reactome.compound":[
"2509792",
"29602"
],
"sabiork":[
"1306"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00114"
]
}
},
{
"id":"thm_e",
"name":"Thiamin",
"compartment":"e",
"charge":1,
"formula":"C12H17N4OS",
"notes":{
"original_bigg_ids":[
"thm_e"
]
},
"annotation":{
"bigg.metabolite":[
"thm"
],
"chebi":[
"CHEBI:33283"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d00080d5-971d-4e5f-973a-226a589d76df"
],
"inchi_key":[
"MYVIATVLJGTBFV-UHFFFAOYSA-M"
],
"kegg.drug":[
"D08580"
],
"metanetx.chemical":[
"MNXM161565"
],
"sabiork":[
"2032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00305"
]
}
},
{
"id":"g3pg_e",
"name":"Glycerophosphoglycerol",
"compartment":"e",
"charge":-1,
"formula":"C6H14O8P",
"notes":{
"original_bigg_ids":[
"g3pg_e"
]
},
"annotation":{
"bigg.metabolite":[
"g3pg"
],
"biocyc":[
"META:GLYCEROPHOSPHOGLYCEROL"
],
"chebi":[
"CHEBI:61933",
"CHEBI:5457"
],
"inchi_key":[
"LLCSXHMJULHSJN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C03274"
],
"metanetx.chemical":[
"MNXM598"
],
"sabiork":[
"6520"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02090"
],
"slm":[
"000001190"
]
}
},
{
"id":"g3pi_e",
"name":"Sn-Glycero-3-phospho-1-inositol",
"compartment":"e",
"charge":-1,
"formula":"C9H18O11P",
"notes":{
"original_bigg_ids":[
"g3pi_e"
]
},
"annotation":{
"bigg.metabolite":[
"g3pi"
],
"biocyc":[
"META:CPD-541"
],
"chebi":[
"CHEBI:26695",
"CHEBI:64715",
"CHEBI:58444",
"CHEBI:18321",
"CHEBI:10645",
"CHEBI:11200"
],
"hmdb":[
"HMDB11649"
],
"inchi_key":[
"BMVUIWJCUQSHLZ-UJGXJMNGSA-M"
],
"kegg.compound":[
"C01225"
],
"metanetx.chemical":[
"MNXM1517"
],
"reactome.compound":[
"6813734"
],
"sabiork":[
"5457"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00902"
]
}
},
{
"id":"indole_e",
"name":"Indole",
"compartment":"e",
"charge":0,
"formula":"C8H7N",
"notes":{
"original_bigg_ids":[
"indole_e"
]
},
"annotation":{
"bigg.metabolite":[
"indole"
],
"biocyc":[
"META:INDOLE"
],
"chebi":[
"CHEBI:43537",
"CHEBI:16881",
"CHEBI:35579",
"CHEBI:14444",
"CHEBI:5900",
"CHEBI:24794",
"CHEBI:35581"
],
"hmdb":[
"HMDB00738"
],
"inchi_key":[
"SIKJAQJRHWYJAI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00463"
],
"metanetx.chemical":[
"MNXM377"
],
"reactome.compound":[
"216547"
],
"sabiork":[
"5101"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00359"
]
}
},
{
"id":"g3ps_e",
"name":"Glycerophosphoserine",
"compartment":"e",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"g3ps_e"
]
},
"annotation":{
"bigg.metabolite":[
"g3ps"
],
"biocyc":[
"META:CPD0-2030"
],
"chebi":[
"CHEBI:64765",
"CHEBI:64945",
"CHEBI:61931",
"CHEBI:62013"
],
"inchi_key":[
"ZWZWYGMENQVNFU-UHNVWZDZSA-M"
],
"metanetx.chemical":[
"MNXM97117"
],
"sabiork":[
"27671"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15468"
],
"slm":[
"000001192"
]
}
},
{
"id":"thr__L_e",
"name":"L-Threonine",
"compartment":"e",
"charge":0,
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"thr_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"thr__L"
],
"biocyc":[
"META:THR"
],
"chebi":[
"CHEBI:16857",
"CHEBI:42083",
"CHEBI:32822",
"CHEBI:45843",
"CHEBI:57926",
"CHEBI:21403",
"CHEBI:32833",
"CHEBI:32820",
"CHEBI:13175",
"CHEBI:6308",
"CHEBI:45983",
"CHEBI:32832",
"CHEBI:26986"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b570a573-71c2-4661-a517-6ac1b121dc59"
],
"hmdb":[
"HMDB00167"
],
"inchi_key":[
"AYFVYJQAPQTCCC-GBXIJSLDSA-N"
],
"kegg.compound":[
"C00188"
],
"kegg.drug":[
"D00041"
],
"metanetx.chemical":[
"MNXM142"
],
"reactome.compound":[
"352000",
"351990",
"379706"
],
"sabiork":[
"76",
"27463"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00161"
]
}
},
{
"id":"inost_e",
"name":"Myo-Inositol",
"compartment":"e",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"inost_e"
]
},
"annotation":{
"bigg.metabolite":[
"inost"
],
"biocyc":[
"META:CPD-8052",
"META:MYO-INOSITOL"
],
"chebi":[
"CHEBI:4200",
"CHEBI:12826",
"CHEBI:17268",
"CHEBI:27372",
"CHEBI:43559",
"CHEBI:25451",
"CHEBI:19183",
"CHEBI:24848",
"CHEBI:10601",
"CHEBI:52772",
"CHEBI:12831"
],
"hmdb":[
"HMDB02256",
"HMDB00211",
"HMDB34220"
],
"inchi_key":[
"CDAISMWEOUEBRE-GPIVLXJGSA-N"
],
"kegg.compound":[
"C00137",
"C19891"
],
"kegg.drug":[
"D08079"
],
"metanetx.chemical":[
"MNXM127"
],
"reactome.compound":[
"426910",
"429130"
],
"sabiork":[
"5010",
"25454"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21131",
"cpd00121"
]
}
},
{
"id":"thrp_e",
"name":"L-Threonine O-3-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C4H8NO6P",
"notes":{
"original_bigg_ids":[
"thrp_e"
]
},
"annotation":{
"bigg.metabolite":[
"thrp"
],
"biocyc":[
"META:L-THREONINE-O-3-PHOSPHATE"
],
"chebi":[
"CHEBI:58675",
"CHEBI:45955",
"CHEBI:37525",
"CHEBI:31757",
"CHEBI:21967"
],
"hmdb":[
"HMDB11185"
],
"inchi_key":[
"USRGIUJOYOXOQJ-GBXIJSLDSA-L"
],
"kegg.compound":[
"C12147"
],
"metanetx.chemical":[
"MNXM1492"
],
"sabiork":[
"14183"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08928"
]
}
},
{
"id":"g6p_e",
"name":"D-Glucose 6-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"g6p_e"
]
},
"annotation":{
"bigg.metabolite":[
"g6p"
],
"biocyc":[
"META:D-glucopyranose-6-phosphate"
],
"chebi":[
"CHEBI:61548",
"CHEBI:14314",
"CHEBI:4170"
],
"hmdb":[
"HMDB01549",
"HMDB01401",
"HMDB06793"
],
"inchi_key":[
"NBSCHQHZLSJFNQ-GASJEMHNSA-L"
],
"kegg.compound":[
"C00092"
],
"metanetx.chemical":[
"MNXM160"
],
"reactome.compound":[
"1629756"
],
"sabiork":[
"1404",
"1405"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00079",
"cpd26836"
]
}
},
{
"id":"ins_e",
"name":"Inosine",
"compartment":"e",
"charge":0,
"formula":"C10H12N4O5",
"notes":{
"original_bigg_ids":[
"ins_e"
]
},
"annotation":{
"bigg.metabolite":[
"ins"
],
"biocyc":[
"META:INOSINE"
],
"chebi":[
"CHEBI:17596",
"CHEBI:24841",
"CHEBI:5927",
"CHEBI:14456",
"CHEBI:44407"
],
"hmdb":[
"HMDB00195"
],
"inchi_key":[
"UGQMRVRMYYASKQ-KQYNXXCUSA-N"
],
"kegg.compound":[
"C00294"
],
"kegg.drug":[
"D00054"
],
"metanetx.chemical":[
"MNXM334"
],
"reactome.compound":[
"83927",
"83921"
],
"sabiork":[
"1868"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00246"
]
}
},
{
"id":"gal1p_e",
"name":"Alpha-D-Galactose 1-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"gal1p_e"
]
},
"annotation":{
"bigg.metabolite":[
"gal1p"
],
"biocyc":[
"META:GALACTOSE-1P"
],
"chebi":[
"CHEBI:42878",
"CHEBI:37480",
"CHEBI:12306",
"CHEBI:4140",
"CHEBI:58336",
"CHEBI:22374",
"CHEBI:12305",
"CHEBI:10232",
"CHEBI:20957",
"CHEBI:17973",
"CHEBI:59011"
],
"hmdb":[
"HMDB00645",
"HMDB62705",
"HMDB03359"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-FPRJBGLDSA-L"
],
"kegg.compound":[
"C00446",
"C03384"
],
"metanetx.chemical":[
"MNXM336"
],
"reactome.compound":[
"30170"
],
"sabiork":[
"1381",
"24789",
"1495"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19025",
"cpd00348"
]
}
},
{
"id":"thym_e",
"name":"Thymine C5H6N2O2",
"compartment":"e",
"charge":0,
"formula":"C5H6N2O2",
"notes":{
"original_bigg_ids":[
"thym_e"
]
},
"annotation":{
"bigg.metabolite":[
"thym"
],
"biocyc":[
"META:THYMINE"
],
"chebi":[
"CHEBI:15247",
"CHEBI:27004",
"CHEBI:46017",
"CHEBI:9580",
"CHEBI:17821"
],
"hmdb":[
"HMDB00262"
],
"inchi_key":[
"RWQNBRDOKXIBIV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00178"
],
"metanetx.chemical":[
"MNXM386"
],
"reactome.compound":[
"83960"
],
"sabiork":[
"60"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00151"
]
}
},
{
"id":"isetac_e",
"name":"Isethionic acid",
"compartment":"e",
"charge":-1,
"formula":"C2H5O4S",
"notes":{
"original_bigg_ids":[
"isetac_e"
]
},
"annotation":{
"bigg.metabolite":[
"isetac"
],
"biocyc":[
"META:CPD-3745"
],
"chebi":[
"CHEBI:1157",
"CHEBI:61904"
],
"hmdb":[
"HMDB03903"
],
"inchi_key":[
"SUMDYPCJJOFFON-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05123"
],
"metanetx.chemical":[
"MNXM1630"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03048"
]
}
},
{
"id":"thymd_e",
"name":"Thymidine C10H14N2O5",
"compartment":"e",
"charge":0,
"formula":"C10H14N2O5",
"notes":{
"original_bigg_ids":[
"thymd_e"
]
},
"annotation":{
"bigg.metabolite":[
"thymd"
],
"biocyc":[
"META:THYMIDINE"
],
"chebi":[
"CHEBI:45834",
"CHEBI:45917",
"CHEBI:17748",
"CHEBI:9579",
"CHEBI:45918",
"CHEBI:19273",
"CHEBI:45782",
"CHEBI:15244",
"CHEBI:53527"
],
"hmdb":[
"HMDB00273"
],
"inchi_key":[
"IQFYYKKMVGJFEH-XLPZGREQSA-N"
],
"kegg.compound":[
"C00214"
],
"metanetx.chemical":[
"MNXM420"
],
"reactome.compound":[
"83928"
],
"sabiork":[
"1315"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00184"
]
}
},
{
"id":"tma_e",
"name":"Trimethylamine",
"compartment":"e",
"charge":1,
"formula":"C3H10N",
"notes":{
"original_bigg_ids":[
"tma_e"
]
},
"annotation":{
"bigg.metabolite":[
"tma"
],
"biocyc":[
"META:TRIMETHYLAMINE"
],
"chebi":[
"CHEBI:9732",
"CHEBI:18139",
"CHEBI:15261",
"CHEBI:58389",
"CHEBI:27127",
"CHEBI:27125"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3311ee4e-2800-486b-9556-983f5d367c23"
],
"hmdb":[
"HMDB00906"
],
"inchi_key":[
"GETQZCLCWQTVFV-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00565"
],
"metanetx.chemical":[
"MNXM352"
],
"reactome.compound":[
"30373"
],
"sabiork":[
"2096"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00441"
]
}
},
{
"id":"gal_bD_e",
"name":"Beta D-Galactose",
"compartment":"e",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"gal_bD_e"
]
},
"annotation":{
"bigg.metabolite":[
"gal_bD"
],
"biocyc":[
"META:GALACTOSE"
],
"chebi":[
"CHEBI:42776",
"CHEBI:27667",
"CHEBI:10383",
"CHEBI:22774",
"CHEBI:42889"
],
"hmdb":[
"HMDB03449"
],
"inchi_key":[
"WQZGKKKJIJFFOK-FPRJBGLDSA-N"
],
"kegg.compound":[
"C00962"
],
"metanetx.chemical":[
"MNXM112"
],
"sabiork":[
"1377"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00709"
]
}
},
{
"id":"k_e",
"name":"Potassium",
"compartment":"e",
"charge":1,
"formula":"K",
"notes":{
"original_bigg_ids":[
"k_e"
]
},
"annotation":{
"bigg.metabolite":[
"k"
],
"biocyc":[
"META:K+"
],
"chebi":[
"CHEBI:26219",
"CHEBI:29103",
"CHEBI:8345",
"CHEBI:49685"
],
"hmdb":[
"HMDB00586"
],
"inchi_key":[
"NPYPAHLBTDXSSS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00238"
],
"kegg.drug":[
"D08403"
],
"metanetx.chemical":[
"MNXM95"
],
"reactome.compound":[
"74126",
"5626313",
"29804"
],
"sabiork":[
"21"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00205"
]
}
},
{
"id":"gal_e",
"name":"D-Galactose",
"compartment":"e",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"gal_e"
]
},
"annotation":{
"bigg.metabolite":[
"gal"
],
"biocyc":[
"META:ALPHA-D-GALACTOSE",
"META:D-galactopyranose"
],
"chebi":[
"CHEBI:12936",
"CHEBI:10231",
"CHEBI:4139",
"CHEBI:28061",
"CHEBI:22373",
"CHEBI:42741"
],
"hmdb":[
"HMDB05762",
"HMDB00143"
],
"inchi_key":[
"WQZGKKKJIJFFOK-PHYPRBDBSA-N"
],
"kegg.compound":[
"C00984",
"C00124"
],
"kegg.drug":[
"D04291"
],
"metanetx.chemical":[
"MNXM390"
],
"sabiork":[
"1661",
"90",
"1662"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00724",
"cpd00108"
]
}
},
{
"id":"tmao_e",
"name":"Trimethylamine N-oxide",
"compartment":"e",
"charge":0,
"formula":"C3H9NO",
"notes":{
"original_bigg_ids":[
"tmao_e"
]
},
"annotation":{
"bigg.metabolite":[
"tmao"
],
"biocyc":[
"META:TRIMETHYLAMINE-N-O"
],
"chebi":[
"CHEBI:15724",
"CHEBI:15262",
"CHEBI:27126",
"CHEBI:9733",
"CHEBI:15263"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c203aa4e-eb3d-491f-80bc-2b014da6482f"
],
"hmdb":[
"HMDB00925"
],
"inchi_key":[
"UYPYRKYUKCHHIB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01104"
],
"metanetx.chemical":[
"MNXM437"
],
"reactome.compound":[
"140963"
],
"sabiork":[
"5388"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00811"
]
}
},
{
"id":"kdo2lipid4_e",
"name":"KDO(2)-lipid IV(A)",
"compartment":"e",
"charge":-6,
"formula":"C84H148N2O37P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4_e"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4"
],
"biocyc":[
"META:KDO2-LIPID-IVA"
],
"chebi":[
"CHEBI:28526",
"CHEBI:60365",
"CHEBI:4477",
"CHEBI:23657"
],
"inchi_key":[
"XAOLJGCZESYRFT-VHSKNIDJSA-H"
],
"kegg.compound":[
"C06025"
],
"kegg.glycan":[
"G11160"
],
"lipidmaps":[
"LMSL02000003"
],
"metanetx.chemical":[
"MNXM824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03586"
]
}
},
{
"id":"tre_e",
"name":"Trehalose",
"compartment":"e",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"tre_e"
]
},
"annotation":{
"bigg.metabolite":[
"tre"
],
"biocyc":[
"META:CPD-15990",
"META:TREHALOSE"
],
"chebi":[
"CHEBI:46211",
"CHEBI:12284",
"CHEBI:12281",
"CHEBI:15251",
"CHEBI:22365",
"CHEBI:10202",
"CHEBI:12287",
"CHEBI:16551",
"CHEBI:27082"
],
"hmdb":[
"HMDB00975"
],
"inchi_key":[
"HDTRYLNUVZCQOY-LIZSDCNHSA-N"
],
"kegg.compound":[
"C01083"
],
"kegg.glycan":[
"G00293"
],
"metanetx.chemical":[
"MNXM198"
],
"reactome.compound":[
"868614",
"189078"
],
"sabiork":[
"91"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00794"
]
}
},
{
"id":"galct__D_e",
"name":"D-Galactarate",
"compartment":"e",
"charge":-2,
"formula":"C6H8O8",
"notes":{
"original_bigg_ids":[
"galct_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"galct__D"
],
"biocyc":[
"META:D-GALACTARATE"
],
"chebi":[
"CHEBI:33799",
"CHEBI:16537",
"CHEBI:12929",
"CHEBI:24135",
"CHEBI:35390",
"CHEBI:14285",
"CHEBI:24136",
"CHEBI:17444",
"CHEBI:4130",
"CHEBI:48871",
"CHEBI:30852",
"CHEBI:20944",
"CHEBI:5250",
"CHEBI:24137"
],
"hmdb":[
"HMDB00639",
"HMDB03435"
],
"inchi_key":[
"DSLZVSRJTYRBFB-DUHBMQHGSA-L"
],
"kegg.compound":[
"C00879"
],
"lipidmaps":[
"LMFA01170107"
],
"metanetx.chemical":[
"MNXM1080"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00652"
]
}
},
{
"id":"galctn__D_e",
"name":"D-Galactonate",
"compartment":"e",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"galctn_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"galctn__D"
],
"biocyc":[
"META:D-GALACTONATE"
],
"chebi":[
"CHEBI:12931",
"CHEBI:24149",
"CHEBI:16534",
"CHEBI:4132",
"CHEBI:24148"
],
"hmdb":[
"HMDB00565"
],
"inchi_key":[
"RGHNJXZEOKUKBD-MGCNEYSASA-M"
],
"kegg.compound":[
"C00880"
],
"metanetx.chemical":[
"MNXM1734"
],
"sabiork":[
"2177"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00653"
]
}
},
{
"id":"lac__L_e",
"name":"L-Lactate",
"compartment":"e",
"charge":-1,
"formula":"C3H5O3",
"notes":{
"original_bigg_ids":[
"lac_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"lac__L"
],
"biocyc":[
"META:L-LACTATE"
],
"chebi":[
"CHEBI:11065",
"CHEBI:16651",
"CHEBI:422",
"CHEBI:18783",
"CHEBI:12411"
],
"hmdb":[
"HMDB62492",
"HMDB00190",
"HMDB03328"
],
"inchi_key":[
"JVTAAEKCZFNVCJ-REOHCLBHSA-M"
],
"kegg.compound":[
"C00186"
],
"metanetx.chemical":[
"MNXM179"
],
"reactome.compound":[
"373863",
"29708",
"6807616"
],
"sabiork":[
"1312"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00159"
]
}
},
{
"id":"galctn__L_e",
"name":"L-Galactonate",
"compartment":"e",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"galctn_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"galctn__L"
],
"biocyc":[
"META:CPD0-1083"
],
"chebi":[
"CHEBI:37425",
"CHEBI:53071"
],
"inchi_key":[
"RGHNJXZEOKUKBD-RSJOWCBRSA-M"
],
"kegg.compound":[
"C15930"
],
"metanetx.chemical":[
"MNXM636"
],
"sabiork":[
"24860"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14659"
]
}
},
{
"id":"trp__L_e",
"name":"L-Tryptophan",
"compartment":"e",
"charge":0,
"formula":"C11H12N2O2",
"notes":{
"original_bigg_ids":[
"trp_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"trp__L"
],
"biocyc":[
"META:TRP"
],
"chebi":[
"CHEBI:13178",
"CHEBI:27163",
"CHEBI:6310",
"CHEBI:9769",
"CHEBI:32728",
"CHEBI:16828",
"CHEBI:27897",
"CHEBI:21407",
"CHEBI:64554",
"CHEBI:46125",
"CHEBI:57912",
"CHEBI:32704",
"CHEBI:46086",
"CHEBI:45988",
"CHEBI:184633",
"CHEBI:46225",
"CHEBI:32727",
"CHEBI:32702"
],
"hmdb":[
"HMDB00929",
"HMDB30396"
],
"inchi_key":[
"QIVBCDIJIAJPQS-VIFPVBQESA-N"
],
"kegg.compound":[
"C00806",
"C00078"
],
"kegg.drug":[
"D00020"
],
"metanetx.chemical":[
"MNXM94"
],
"reactome.compound":[
"379709",
"352006",
"29500"
],
"sabiork":[
"2164",
"85"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19007",
"cpd00065"
]
}
},
{
"id":"lcts_e",
"name":"Lactose C12H22O11",
"compartment":"e",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"lcts_e"
]
},
"annotation":{
"bigg.metabolite":[
"lcts"
],
"biocyc":[
"META:CPD-15971",
"META:CPD-15972"
],
"chebi":[
"CHEBI:14497",
"CHEBI:10296",
"CHEBI:10428",
"CHEBI:25005",
"CHEBI:27968",
"CHEBI:36218",
"CHEBI:22846",
"CHEBI:22760",
"CHEBI:10380",
"CHEBI:613009",
"CHEBI:35463",
"CHEBI:17716",
"CHEBI:43665",
"CHEBI:27755",
"CHEBI:22460",
"CHEBI:28577"
],
"hmdb":[
"HMDB41627"
],
"inchi_key":[
"GUBGYTABKSRVRQ-QKKXKWKRSA-N"
],
"kegg.compound":[
"C00243",
"C01970"
],
"kegg.drug":[
"D00046"
],
"kegg.glycan":[
"G10504"
],
"metanetx.chemical":[
"MNXM362"
],
"sabiork":[
"1376",
"104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03809",
"cpd00208",
"cpd01354"
]
}
},
{
"id":"tsul_e",
"name":"Thiosulfate",
"compartment":"e",
"charge":-2,
"formula":"O3S2",
"notes":{
"original_bigg_ids":[
"tsul_e"
]
},
"annotation":{
"bigg.metabolite":[
"tsul"
],
"biocyc":[
"META:S2O3"
],
"chebi":[
"CHEBI:33540",
"CHEBI:33539",
"CHEBI:9569",
"CHEBI:26977",
"CHEBI:33541",
"CHEBI:15242",
"CHEBI:16094",
"CHEBI:29279",
"CHEBI:45922",
"CHEBI:5587",
"CHEBI:33542"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/32b1f2ad-32ba-4271-9c86-f4bb1c35e35d"
],
"hmdb":[
"HMDB00257",
"HMDB60293"
],
"inchi_key":[
"DHCDFWKWKRSZHF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05529",
"C00320"
],
"metanetx.chemical":[
"MNXM323"
],
"reactome.compound":[
"1614595"
],
"sabiork":[
"5043"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00268"
]
}
},
{
"id":"galt_e",
"name":"Galactitol",
"compartment":"e",
"charge":0,
"formula":"C6H14O6",
"notes":{
"original_bigg_ids":[
"galt_e"
]
},
"annotation":{
"bigg.metabolite":[
"galt"
],
"biocyc":[
"META:GALACTITOL"
],
"chebi":[
"CHEBI:53575",
"CHEBI:5251",
"CHEBI:16813",
"CHEBI:24139",
"CHEBI:14286"
],
"hmdb":[
"HMDB00107"
],
"inchi_key":[
"FBPFZTCFMRRESA-GUCUJZIJSA-N"
],
"kegg.compound":[
"C01697"
],
"metanetx.chemical":[
"MNXM1233"
],
"sabiork":[
"2311"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01171"
]
}
},
{
"id":"leu__L_e",
"name":"L-Leucine",
"compartment":"e",
"charge":0,
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"leu_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"leu__L"
],
"biocyc":[
"META:LEU"
],
"chebi":[
"CHEBI:32620",
"CHEBI:25017",
"CHEBI:43695",
"CHEBI:21348",
"CHEBI:13131",
"CHEBI:43733",
"CHEBI:43646",
"CHEBI:43814",
"CHEBI:6260",
"CHEBI:32628",
"CHEBI:32627",
"CHEBI:10866",
"CHEBI:57427",
"CHEBI:32619",
"CHEBI:15603"
],
"hmdb":[
"HMDB00687",
"HMDB62203"
],
"inchi_key":[
"ROHFNLRQFUQHCH-YFKPBYRVSA-N"
],
"kegg.compound":[
"C16439",
"C00123"
],
"kegg.drug":[
"D00030"
],
"lipidmaps":[
"LMFA01100048"
],
"metanetx.chemical":[
"MNXM140"
],
"reactome.compound":[
"29588",
"113580",
"351964"
],
"sabiork":[
"21059",
"69"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00107",
"cpd15143"
]
}
},
{
"id":"galur_e",
"name":"D-Galacturonate",
"compartment":"e",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"galur_e"
]
},
"annotation":{
"bigg.metabolite":[
"galur"
],
"biocyc":[
"META:D-Galactopyranuronate"
],
"chebi":[
"CHEBI:20978",
"CHEBI:4153",
"CHEBI:18024",
"CHEBI:20976",
"CHEBI:75525"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-YMDCURPLSA-M"
],
"kegg.compound":[
"C00333"
],
"metanetx.chemical":[
"MNXM48464"
],
"sabiork":[
"2020"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00280"
]
}
},
{
"id":"ttdca_e",
"name":"Tetradecanoate (n-C14:0)",
"compartment":"e",
"charge":-1,
"formula":"C14H27O2",
"notes":{
"original_bigg_ids":[
"ttdca_e"
]
},
"annotation":{
"bigg.metabolite":[
"ttdca"
],
"metanetx.chemical":[
"MNXM162239"
],
"sbo":"SBO:0000247"
}
},
{
"id":"lipa_e",
"name":"KDO(2)-lipid (A)",
"compartment":"e",
"charge":-6,
"formula":"C110H196N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_e"
]
},
"annotation":{
"bigg.metabolite":[
"lipa"
],
"chebi":[
"CHEBI:27963",
"CHEBI:4476",
"CHEBI:23656",
"CHEBI:58540"
],
"inchi_key":[
"DIXUKJUHGLIZGU-OIPVZEHTSA-H"
],
"kegg.compound":[
"C06026"
],
"lipidmaps":[
"LMSL02000001"
],
"metanetx.chemical":[
"MNXM946"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03587"
]
}
},
{
"id":"ttdcea_e",
"name":"Tetradecenoate (n-C14:1)",
"compartment":"e",
"charge":-1,
"formula":"C14H25O2",
"notes":{
"original_bigg_ids":[
"ttdcea_e"
]
},
"annotation":{
"bigg.metabolite":[
"ttdcea"
],
"metanetx.chemical":[
"MNXM641"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gam6p_e",
"name":"D-Glucosamine 6-phosphate",
"compartment":"e",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"gam6p_e"
]
},
"annotation":{
"bigg.metabolite":[
"gam6p"
],
"biocyc":[
"META:D-GLUCOSAMINE-6-P"
],
"chebi":[
"CHEBI:12962",
"CHEBI:47987",
"CHEBI:58725"
],
"inchi_key":[
"XHMJOUIAFHJHBW-IVMDWMLBSA-M"
],
"kegg.compound":[
"C00352"
],
"metanetx.chemical":[
"MNXM370"
],
"sabiork":[
"1372"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00288"
]
}
},
{
"id":"lys__L_e",
"name":"L-Lysine",
"compartment":"e",
"charge":1,
"formula":"C6H15N2O2",
"notes":{
"original_bigg_ids":[
"lys_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"lys__L"
],
"biocyc":[
"META:LYS"
],
"chebi":[
"CHEBI:6264",
"CHEBI:32564",
"CHEBI:13135",
"CHEBI:32550",
"CHEBI:21351",
"CHEBI:18019",
"CHEBI:32552",
"CHEBI:32551",
"CHEBI:133538",
"CHEBI:32565",
"CHEBI:43950",
"CHEBI:32563",
"CHEBI:25094"
],
"hmdb":[
"HMDB03405",
"HMDB00182",
"HMDB62809"
],
"inchi_key":[
"KDXKERNSBIXSRK-YFKPBYRVSA-O"
],
"kegg.compound":[
"C00047",
"C16440"
],
"kegg.drug":[
"D02304"
],
"metanetx.chemical":[
"MNXM78"
],
"reactome.compound":[
"29444",
"351979",
"351991"
],
"sabiork":[
"22945",
"79"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19182",
"cpd00039"
]
}
},
{
"id":"gam_e",
"name":"D-Glucosamine",
"compartment":"e",
"charge":1,
"formula":"C6H14NO5",
"notes":{
"original_bigg_ids":[
"gam_e"
]
},
"annotation":{
"bigg.metabolite":[
"gam"
],
"biocyc":[
"META:GLUCOSAMINE"
],
"chebi":[
"CHEBI:58723",
"CHEBI:17315",
"CHEBI:4162",
"CHEBI:12961",
"CHEBI:47972",
"CHEBI:47977",
"CHEBI:5417"
],
"hmdb":[
"HMDB06479",
"HMDB01514",
"HMDB15410"
],
"inchi_key":[
"MSWZFWKMSRAUBD-IVMDWMLBSA-O"
],
"kegg.compound":[
"C00329"
],
"kegg.drug":[
"D04334"
],
"metanetx.chemical":[
"MNXM533"
],
"reactome.compound":[
"6786660"
],
"sabiork":[
"1591",
"1592"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01247",
"cpd00276",
"cpd27103"
]
}
},
{
"id":"tungs_e",
"name":"Tungstate",
"compartment":"e",
"charge":-2,
"formula":"O4W1",
"notes":{
"original_bigg_ids":[
"tungs_e"
]
},
"annotation":{
"bigg.metabolite":[
"tungs"
],
"biocyc":[
"META:TUNGSTATE"
],
"chebi":[
"CHEBI:36271",
"CHEBI:30518",
"CHEBI:36272",
"CHEBI:46497",
"CHEBI:46502"
],
"inchi_key":[
"PBYZMCDFOULPGH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C20679"
],
"metanetx.chemical":[
"MNXM88308"
],
"sabiork":[
"18862"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15574"
]
}
},
{
"id":"lyx__L_e",
"name":"L-Lyxose",
"compartment":"e",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"lyx_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"lyx__L"
],
"biocyc":[
"META:CPD-15867"
],
"chebi":[
"CHEBI:62321"
],
"inchi_key":[
"SRBFZHDQGSBBOR-AEQNFAKKSA-N"
],
"kegg.compound":[
"C01508"
],
"metanetx.chemical":[
"MNXM4641"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01067"
]
}
},
{
"id":"tym_e",
"name":"Tyramine",
"compartment":"e",
"charge":1,
"formula":"C8H12NO",
"notes":{
"original_bigg_ids":[
"tym_e"
]
},
"annotation":{
"bigg.metabolite":[
"tym"
],
"biocyc":[
"META:TYRAMINE"
],
"chebi":[
"CHEBI:15760",
"CHEBI:327995",
"CHEBI:9799",
"CHEBI:15276",
"CHEBI:27174"
],
"hmdb":[
"HMDB62629",
"HMDB00306"
],
"inchi_key":[
"DZGWFCGJZKJUFP-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00483"
],
"metanetx.chemical":[
"MNXM603"
],
"reactome.compound":[
"500606",
"5696181"
],
"sabiork":[
"5113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00374"
]
}
},
{
"id":"gbbtn_e",
"name":"Gamma-butyrobetaine",
"compartment":"e",
"charge":0,
"formula":"C7H15NO2",
"notes":{
"original_bigg_ids":[
"gbbtn_e"
]
},
"annotation":{
"bigg.metabolite":[
"gbbtn"
],
"biocyc":[
"META:GAMMA-BUTYROBETAINE"
],
"chebi":[
"CHEBI:1941",
"CHEBI:20484",
"CHEBI:12047",
"CHEBI:16244"
],
"hmdb":[
"HMDB01161",
"HMDB06831"
],
"inchi_key":[
"JHPNVNIEXXLNTR-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01181"
],
"metanetx.chemical":[
"MNXM626"
],
"reactome.compound":[
"31369"
],
"sabiork":[
"5425"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00870"
]
}
},
{
"id":"mal__D_e",
"name":"D-Malate",
"compartment":"e",
"charge":-2,
"formula":"C4H4O5",
"notes":{
"original_bigg_ids":[
"mal_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"mal__D"
],
"biocyc":[
"META:CPD-660"
],
"chebi":[
"CHEBI:44073",
"CHEBI:342",
"CHEBI:42060",
"CHEBI:30796",
"CHEBI:15588",
"CHEBI:18685",
"CHEBI:18686",
"CHEBI:11002"
],
"hmdb":[
"HMDB31518"
],
"inchi_key":[
"BJEPYKJPYRNKOW-UWTATZPHSA-L"
],
"kegg.compound":[
"C00497"
],
"metanetx.chemical":[
"MNXM1608"
],
"sabiork":[
"2062"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00386"
]
}
},
{
"id":"gdp_e",
"name":"GDP C10H12N5O11P2",
"compartment":"e",
"charge":-3,
"formula":"C10H12N5O11P2",
"notes":{
"original_bigg_ids":[
"gdp_e"
]
},
"annotation":{
"bigg.metabolite":[
"gdp"
],
"biocyc":[
"META:GDP"
],
"chebi":[
"CHEBI:5212",
"CHEBI:17552",
"CHEBI:58189",
"CHEBI:13327",
"CHEBI:42738",
"CHEBI:14379",
"CHEBI:24448",
"CHEBI:65180"
],
"hmdb":[
"HMDB01201"
],
"inchi_key":[
"QGWNDRXFNXRZMB-UUOKFMHZSA-K"
],
"kegg.compound":[
"C00035"
],
"kegg.glycan":[
"G10620"
],
"metanetx.chemical":[
"MNXM30"
],
"reactome.compound":[
"113525",
"29420",
"205689",
"111349"
],
"sabiork":[
"1280"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00031"
]
}
},
{
"id":"glc__D_e",
"name":"D-Glucose",
"compartment":"e",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"glc_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"glc__D"
],
"biocyc":[
"META:Glucopyranose"
],
"chebi":[
"CHEBI:12965",
"CHEBI:20999",
"CHEBI:4167",
"CHEBI:17634"
],
"hmdb":[
"HMDB00122",
"HMDB06564"
],
"inchi_key":[
"WQZGKKKJIJFFOK-GASJEMHNSA-N"
],
"kegg.compound":[
"C00031"
],
"kegg.drug":[
"D00009"
],
"metanetx.chemical":[
"MNXM41"
],
"sabiork":[
"1406",
"1407"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26821",
"cpd00027"
]
}
},
{
"id":"tyr__L_e",
"name":"L-Tyrosine",
"compartment":"e",
"charge":0,
"formula":"C9H11NO3",
"notes":{
"original_bigg_ids":[
"tyr_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"tyr__L"
],
"biocyc":[
"META:TYR"
],
"chebi":[
"CHEBI:6313",
"CHEBI:21411",
"CHEBI:46070",
"CHEBI:9800",
"CHEBI:32786",
"CHEBI:15277",
"CHEBI:32761",
"CHEBI:32784",
"CHEBI:46161",
"CHEBI:13181",
"CHEBI:32760",
"CHEBI:58315",
"CHEBI:32762",
"CHEBI:27176",
"CHEBI:17895",
"CHEBI:18186",
"CHEBI:32785"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/974bd9b7-53fb-48cd-aaf3-6bd3196c0365"
],
"hmdb":[
"HMDB00647",
"HMDB00158"
],
"inchi_key":[
"OUYCCCASQSFEME-QMMMGPOBSA-N"
],
"kegg.compound":[
"C00082",
"C01536"
],
"kegg.drug":[
"D00022"
],
"metanetx.chemical":[
"MNXM76"
],
"reactome.compound":[
"379710",
"5668567",
"352030",
"29506"
],
"sabiork":[
"84",
"2291"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30745",
"cpd00069"
]
}
},
{
"id":"mal__L_e",
"name":"L-Malate",
"compartment":"e",
"charge":-2,
"formula":"C4H4O5",
"notes":{
"original_bigg_ids":[
"mal_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"mal__L"
],
"biocyc":[
"META:MAL"
],
"chebi":[
"CHEBI:15589",
"CHEBI:30797",
"CHEBI:423",
"CHEBI:18784",
"CHEBI:18785",
"CHEBI:13140",
"CHEBI:11066"
],
"hmdb":[
"HMDB00156"
],
"inchi_key":[
"BJEPYKJPYRNKOW-REOHCLBHSA-L"
],
"kegg.compound":[
"C00149"
],
"metanetx.chemical":[
"MNXM98"
],
"reactome.compound":[
"198498",
"113544"
],
"sabiork":[
"1918"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00130"
]
}
},
{
"id":"tyrp_e",
"name":"Phosphotyrosine",
"compartment":"e",
"charge":-2,
"formula":"C9H10NO6P",
"notes":{
"original_bigg_ids":[
"tyrp_e"
]
},
"annotation":{
"bigg.metabolite":[
"tyrp"
],
"biocyc":[
"META:CPD-3728"
],
"chebi":[
"CHEBI:45080",
"CHEBI:45209",
"CHEBI:45158",
"CHEBI:62338",
"CHEBI:45187",
"CHEBI:21991",
"CHEBI:8171",
"CHEBI:37788"
],
"hmdb":[
"HMDB06049"
],
"inchi_key":[
"DCWXELXMIBXGTH-QMMMGPOBSA-L"
],
"kegg.compound":[
"C06501"
],
"metanetx.chemical":[
"MNXM3323"
],
"sabiork":[
"2897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03912"
]
}
},
{
"id":"uacgam_e",
"name":"UDP-N-acetyl-D-glucosamine",
"compartment":"e",
"charge":-2,
"formula":"C17H25N3O17P2",
"notes":{
"original_bigg_ids":[
"uacgam_e"
]
},
"annotation":{
"bigg.metabolite":[
"uacgam"
],
"biocyc":[
"META:UDP-N-ACETYL-D-GLUCOSAMINE"
],
"chebi":[
"CHEBI:13473",
"CHEBI:22115",
"CHEBI:9823",
"CHEBI:13475",
"CHEBI:13456",
"CHEBI:13476",
"CHEBI:46243",
"CHEBI:57705",
"CHEBI:46287",
"CHEBI:16264"
],
"hmdb":[
"HMDB00290",
"HMDB62760"
],
"inchi_key":[
"LFTYTUAZOPRMMI-CFRASDGPSA-L"
],
"kegg.compound":[
"C00043"
],
"kegg.glycan":[
"G10610"
],
"lipidmaps":[
"LMSL01010002"
],
"metanetx.chemical":[
"MNXM47"
],
"reactome.compound":[
"162756",
"914003",
"3499326"
],
"sabiork":[
"1925"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00037"
]
}
},
{
"id":"glcn_e",
"name":"D-Gluconate",
"compartment":"e",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"glcn_e"
]
},
"annotation":{
"bigg.metabolite":[
"glcn"
],
"biocyc":[
"META:GLUCONATE"
],
"chebi":[
"CHEBI:20983",
"CHEBI:20985",
"CHEBI:18391",
"CHEBI:20986",
"CHEBI:24265",
"CHEBI:24266",
"CHEBI:12955",
"CHEBI:33198",
"CHEBI:4157",
"CHEBI:42715"
],
"hmdb":[
"HMDB00625",
"HMDB03373"
],
"inchi_key":[
"RGHNJXZEOKUKBD-SQOUGZDYSA-M"
],
"kegg.compound":[
"C00257"
],
"metanetx.chemical":[
"MNXM341"
],
"sabiork":[
"23420",
"1998"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00222"
]
}
},
{
"id":"glcr_e",
"name":"D-Glucarate",
"compartment":"e",
"charge":-2,
"formula":"C6H8O8",
"notes":{
"original_bigg_ids":[
"glcr_e"
]
},
"annotation":{
"bigg.metabolite":[
"glcr"
],
"biocyc":[
"META:D-GLUCARATE"
],
"chebi":[
"CHEBI:42731",
"CHEBI:20982",
"CHEBI:16002",
"CHEBI:12953",
"CHEBI:4155",
"CHEBI:33801",
"CHEBI:20980",
"CHEBI:30612"
],
"hmdb":[
"HMDB29881",
"HMDB00663"
],
"inchi_key":[
"DSLZVSRJTYRBFB-LLEIAEIESA-L"
],
"kegg.compound":[
"C00818"
],
"lipidmaps":[
"LMFA01170108"
],
"metanetx.chemical":[
"MNXM744"
],
"sabiork":[
"5252",
"5542"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00571",
"cpd00984",
"cpd01246",
"cpd00609"
]
}
},
{
"id":"malt_e",
"name":"Maltose C12H22O11",
"compartment":"e",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"malt_e"
]
},
"annotation":{
"bigg.metabolite":[
"malt"
],
"biocyc":[
"META:MALTOSE",
"META:ALPHA-MALTOSE"
],
"chebi":[
"CHEBI:6668",
"CHEBI:12340",
"CHEBI:43893",
"CHEBI:22463",
"CHEBI:10300",
"CHEBI:14568",
"CHEBI:18167",
"CHEBI:17306",
"CHEBI:25144"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/943ae27f-7875-4bcd-948d-1551ec9aa1ca"
],
"inchi_key":[
"GUBGYTABKSRVRQ-PICCSMPSSA-N"
],
"kegg.compound":[
"C00897",
"C00208"
],
"kegg.drug":[
"D00044"
],
"kegg.glycan":[
"G00275"
],
"metanetx.chemical":[
"MNXM165"
],
"reactome.compound":[
"188986",
"868706"
],
"sabiork":[
"5881",
"88",
"1669"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00665",
"cpd00179"
]
}
},
{
"id":"glcur1p_e",
"name":"D-Glucuronate 1-phosphate",
"compartment":"e",
"charge":-3,
"formula":"C6H8O10P",
"notes":{
"original_bigg_ids":[
"glcur1p_e"
]
},
"annotation":{
"bigg.metabolite":[
"glcur1p"
],
"biocyc":[
"META:CPD-510"
],
"chebi":[
"CHEBI:4179",
"CHEBI:21014",
"CHEBI:16787",
"CHEBI:681",
"CHEBI:28547",
"CHEBI:19090",
"CHEBI:35145",
"CHEBI:11294",
"CHEBI:57897"
],
"hmdb":[
"HMDB03976",
"HMDB06329"
],
"inchi_key":[
"AIQDYKMWENWVQJ-QIUUJYRFSA-K"
],
"kegg.compound":[
"C05385"
],
"metanetx.chemical":[
"MNXM1165"
],
"sabiork":[
"1842"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03191",
"cpd00880"
]
}
},
{
"id":"glcur_e",
"name":"D-Glucuronate",
"compartment":"e",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"glcur_e"
]
},
"annotation":{
"bigg.metabolite":[
"glcur"
],
"biocyc":[
"META:D-Glucopyranuronate"
],
"chebi":[
"CHEBI:12975",
"CHEBI:24297",
"CHEBI:21013",
"CHEBI:47952",
"CHEBI:24298",
"CHEBI:4178",
"CHEBI:58720",
"CHEBI:15748"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-AQKNRBDQSA-M"
],
"kegg.compound":[
"C00191"
],
"metanetx.chemical":[
"MNXM241"
],
"sabiork":[
"26257"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00164"
]
}
},
{
"id":"udpacgal_e",
"name":"UDP-N-acetyl-D-galactosamine",
"compartment":"e",
"charge":-2,
"formula":"C17H25N3O17P2",
"notes":{
"original_bigg_ids":[
"udpacgal_e"
]
},
"annotation":{
"bigg.metabolite":[
"udpacgal"
],
"biocyc":[
"META:UDP-N-ACETYL-GALACTOSAMINE"
],
"chebi":[
"CHEBI:16650",
"CHEBI:13455",
"CHEBI:57847",
"CHEBI:22112",
"CHEBI:13470",
"CHEBI:9820"
],
"inchi_key":[
"LFTYTUAZOPRMMI-LDDHHVEYSA-L"
],
"kegg.compound":[
"C00203"
],
"kegg.glycan":[
"G10611"
],
"metanetx.chemical":[
"MNXM162233"
],
"reactome.compound":[
"735700"
],
"sabiork":[
"1972"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00175"
]
}
},
{
"id":"udpg_e",
"name":"UDPglucose",
"compartment":"e",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpg_e"
]
},
"annotation":{
"bigg.metabolite":[
"udpg"
],
"biocyc":[
"META:CPD-12575"
],
"chebi":[
"CHEBI:13505",
"CHEBI:52249",
"CHEBI:9845",
"CHEBI:46228",
"CHEBI:46229",
"CHEBI:58367",
"CHEBI:13498",
"CHEBI:28532",
"CHEBI:42885",
"CHEBI:27234",
"CHEBI:18066",
"CHEBI:9895",
"CHEBI:58885",
"CHEBI:22103"
],
"hmdb":[
"HMDB60079"
],
"inchi_key":[
"HSCJRCZFDFQWRP-RDKQLNKOSA-L"
],
"kegg.compound":[
"C00029"
],
"kegg.glycan":[
"G10608"
],
"metanetx.chemical":[
"MNXM722710"
],
"reactome.compound":[
"173594",
"744227",
"29410"
],
"sabiork":[
"3918",
"1277"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00026",
"cpd28293"
]
}
},
{
"id":"malthx_e",
"name":"Maltohexaose",
"compartment":"e",
"charge":0,
"formula":"C36H62O31",
"notes":{
"original_bigg_ids":[
"malthx_e"
]
},
"annotation":{
"bigg.metabolite":[
"malthx"
],
"biocyc":[
"META:MALTOHEXAOSE"
],
"chebi":[
"CHEBI:61953",
"CHEBI:6667",
"CHEBI:27445",
"CHEBI:25141"
],
"hmdb":[
"HMDB12253"
],
"inchi_key":[
"OCIBBXPLUVYKCH-QXVNYKTNSA-N"
],
"kegg.compound":[
"C01936"
],
"kegg.glycan":[
"G00755"
],
"metanetx.chemical":[
"MNXM1317"
],
"sabiork":[
"5897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01329"
]
}
},
{
"id":"udpgal_e",
"name":"UDPgalactose",
"compartment":"e",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpgal_e"
]
},
"annotation":{
"bigg.metabolite":[
"udpgal"
],
"biocyc":[
"META:CPD-14553"
],
"chebi":[
"CHEBI:22100",
"CHEBI:9811",
"CHEBI:18307",
"CHEBI:42751",
"CHEBI:13495",
"CHEBI:66914",
"CHEBI:67119",
"CHEBI:13487",
"CHEBI:58439"
],
"hmdb":[
"HMDB62573",
"HMDB00302"
],
"inchi_key":[
"HSCJRCZFDFQWRP-ABVWGUQPSA-L"
],
"kegg.compound":[
"C00052"
],
"kegg.glycan":[
"G10609"
],
"metanetx.chemical":[
"MNXM89795"
],
"reactome.compound":[
"735682",
"29452"
],
"sabiork":[
"1283",
"3919"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00043",
"cpd30770"
]
}
},
{
"id":"gln__L_e",
"name":"L-Glutamine",
"compartment":"e",
"charge":0,
"formula":"C5H10N2O3",
"notes":{
"original_bigg_ids":[
"gln_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"gln__L"
],
"biocyc":[
"META:GLN"
],
"chebi":[
"CHEBI:42943",
"CHEBI:42899",
"CHEBI:32679",
"CHEBI:32678",
"CHEBI:58359",
"CHEBI:28300",
"CHEBI:42812",
"CHEBI:13110",
"CHEBI:18050",
"CHEBI:32666",
"CHEBI:6227",
"CHEBI:32665",
"CHEBI:21308",
"CHEBI:42814",
"CHEBI:5432",
"CHEBI:24316"
],
"hmdb":[
"HMDB00641"
],
"inchi_key":[
"ZDXPYRJPNDTMRX-VKHMYHEASA-N"
],
"kegg.compound":[
"C00064",
"C00303"
],
"kegg.drug":[
"D00015"
],
"metanetx.chemical":[
"MNXM37"
],
"reactome.compound":[
"113522",
"212615",
"29472"
],
"sabiork":[
"2011",
"74"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00253",
"cpd00053"
]
}
},
{
"id":"maltpt_e",
"name":"Maltopentaose",
"compartment":"e",
"charge":0,
"formula":"C30H52O26",
"notes":{
"original_bigg_ids":[
"maltpt_e"
]
},
"annotation":{
"bigg.metabolite":[
"maltpt"
],
"biocyc":[
"META:MALTOPENTAOSE"
],
"chebi":[
"CHEBI:61952",
"CHEBI:62006"
],
"hmdb":[
"HMDB12254"
],
"inchi_key":[
"FTNIPWXXIGNQQF-DWTFCAFKSA-N"
],
"kegg.glycan":[
"G00343"
],
"metanetx.chemical":[
"MNXM1538"
],
"sabiork":[
"18865"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15495"
]
}
},
{
"id":"glu__L_e",
"name":"L-Glutamate",
"compartment":"e",
"charge":-1,
"formula":"C5H8NO4",
"notes":{
"original_bigg_ids":[
"glu_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"glu__L"
],
"biocyc":[
"META:Glutamates",
"META:GLT"
],
"chebi":[
"CHEBI:76051",
"CHEBI:21301",
"CHEBI:29985",
"CHEBI:42825",
"CHEBI:29987",
"CHEBI:18237",
"CHEBI:24314",
"CHEBI:16015",
"CHEBI:13107",
"CHEBI:5431",
"CHEBI:21304",
"CHEBI:6224",
"CHEBI:14321",
"CHEBI:29988"
],
"hmdb":[
"HMDB00148",
"HMDB60475"
],
"inchi_key":[
"WHUUTDBJXJRKMK-VKHMYHEASA-M"
],
"kegg.compound":[
"C00025",
"C00302"
],
"kegg.drug":[
"D00007",
"D04341"
],
"metanetx.chemical":[
"MNXM89557"
],
"reactome.compound":[
"428614",
"29404",
"113552",
"210382"
],
"sabiork":[
"73",
"2010"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27177",
"cpd00023",
"cpd19002"
]
}
},
{
"id":"udpglcur_e",
"name":"UDP-D-glucuronate",
"compartment":"e",
"charge":-3,
"formula":"C15H19N2O18P2",
"notes":{
"original_bigg_ids":[
"udpglcur_e"
]
},
"annotation":{
"bigg.metabolite":[
"udpglcur"
],
"biocyc":[
"META:UDP-GLUCURONATE"
],
"chebi":[
"CHEBI:46309",
"CHEBI:13489",
"CHEBI:13506",
"CHEBI:22104",
"CHEBI:58052",
"CHEBI:9846",
"CHEBI:17200"
],
"hmdb":[
"HMDB01384",
"HMDB00935"
],
"inchi_key":[
"HDYANYHVCAPMJV-LXQIFKJMSA-K"
],
"kegg.compound":[
"C00167"
],
"kegg.glycan":[
"G10612"
],
"metanetx.chemical":[
"MNXM87"
],
"reactome.compound":[
"174384",
"158601",
"1889970"
],
"sabiork":[
"22782",
"3916"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00144"
]
}
},
{
"id":"malttr_e",
"name":"Maltotriose C18H32O16",
"compartment":"e",
"charge":0,
"formula":"C18H32O16",
"notes":{
"original_bigg_ids":[
"malttr_e"
]
},
"annotation":{
"bigg.metabolite":[
"malttr"
],
"biocyc":[
"META:MALTOTRIOSE"
],
"chebi":[
"CHEBI:61993",
"CHEBI:6672",
"CHEBI:25146",
"CHEBI:43937",
"CHEBI:27931"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7d7cf31a-30a5-4368-8802-9269424379b6"
],
"hmdb":[
"HMDB01262"
],
"inchi_key":[
"FYGDTMLNYKFZSV-PXXRMHSHSA-N"
],
"kegg.compound":[
"C01835"
],
"metanetx.chemical":[
"MNXM468"
],
"reactome.compound":[
"191103"
],
"sabiork":[
"5832"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01262"
]
}
},
{
"id":"ump_e",
"name":"UMP C9H11N2O9P",
"compartment":"e",
"charge":-2,
"formula":"C9H11N2O9P",
"notes":{
"original_bigg_ids":[
"ump_e"
]
},
"annotation":{
"bigg.metabolite":[
"ump"
],
"biocyc":[
"META:UMP"
],
"chebi":[
"CHEBI:47721",
"CHEBI:9849",
"CHEBI:27231",
"CHEBI:46382",
"CHEBI:16695",
"CHEBI:13509",
"CHEBI:13508",
"CHEBI:46385",
"CHEBI:57865",
"CHEBI:46362"
],
"hmdb":[
"HMDB00288"
],
"inchi_key":[
"DJJCXFVJDGTHFX-XVFCMESISA-L"
],
"kegg.compound":[
"C00105"
],
"metanetx.chemical":[
"MNXM80"
],
"reactome.compound":[
"735698",
"109402"
],
"sabiork":[
"1300",
"25061"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00091"
]
}
},
{
"id":"gly_e",
"name":"Glycine",
"compartment":"e",
"charge":0,
"formula":"C2H5NO2",
"notes":{
"original_bigg_ids":[
"gly_e"
]
},
"annotation":{
"bigg.metabolite":[
"gly"
],
"biocyc":[
"META:GLY"
],
"chebi":[
"CHEBI:32508",
"CHEBI:32507",
"CHEBI:15428",
"CHEBI:42964",
"CHEBI:14344",
"CHEBI:24368",
"CHEBI:10792",
"CHEBI:5460",
"CHEBI:57305"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/19441357-44af-48e1-b5ac-0e48c8dcbb87",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/870d7ca5-6659-40eb-8b5d-858bd29cddaa"
],
"hmdb":[
"HMDB00123"
],
"inchi_key":[
"DHMQDGOQFOQNFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00037"
],
"kegg.drug":[
"D00011"
],
"metanetx.chemical":[
"MNXM29"
],
"reactome.compound":[
"29424",
"193446",
"113545",
"159549",
"266029"
],
"sabiork":[
"66"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00033"
]
}
},
{
"id":"ura_e",
"name":"Uracil",
"compartment":"e",
"charge":0,
"formula":"C4H4N2O2",
"notes":{
"original_bigg_ids":[
"ura_e"
]
},
"annotation":{
"bigg.metabolite":[
"ura"
],
"biocyc":[
"META:URACIL"
],
"chebi":[
"CHEBI:27210",
"CHEBI:43254",
"CHEBI:15288",
"CHEBI:46375",
"CHEBI:17568",
"CHEBI:9882"
],
"hmdb":[
"HMDB00300"
],
"inchi_key":[
"ISAKRJDGNUQOIC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00106"
],
"kegg.drug":[
"D00027",
"D09776"
],
"metanetx.chemical":[
"MNXM158"
],
"reactome.compound":[
"83962"
],
"sabiork":[
"61"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00092"
]
}
},
{
"id":"maltttr_e",
"name":"Maltotetraose",
"compartment":"e",
"charge":0,
"formula":"C24H42O21",
"notes":{
"original_bigg_ids":[
"maltttr_e"
]
},
"annotation":{
"bigg.metabolite":[
"maltttr"
],
"biocyc":[
"META:MALTOTETRAOSE",
"META:CPD0-2595",
"META:CPD-13205"
],
"chebi":[
"CHEBI:6671",
"CHEBI:61988",
"CHEBI:28460",
"CHEBI:62974",
"CHEBI:25145",
"CHEBI:44299"
],
"hmdb":[
"HMDB01296"
],
"inchi_key":[
"LUEWUZLMQUOBSB-ZLBHSGTGSA-N"
],
"kegg.compound":[
"C02013",
"C02052"
],
"kegg.glycan":[
"G00459"
],
"metanetx.chemical":[
"MNXM5663"
],
"sabiork":[
"5941",
"5966"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01376",
"cpd01399"
]
}
},
{
"id":"urea_e",
"name":"Urea CH4N2O",
"compartment":"e",
"charge":0,
"formula":"CH4N2O",
"notes":{
"original_bigg_ids":[
"urea_e"
]
},
"annotation":{
"bigg.metabolite":[
"urea"
],
"biocyc":[
"META:UREA"
],
"chebi":[
"CHEBI:134711",
"CHEBI:15292",
"CHEBI:16199",
"CHEBI:32285",
"CHEBI:48376",
"CHEBI:9888",
"CHEBI:27218",
"CHEBI:46379"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a8116a-0fc4-4ad8-b192-1387a253bac6",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e1054e0b-a299-4b89-b470-455c007d2bc6",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/f410026a-1678-4d69-b6ac-505c7b9fe316"
],
"hmdb":[
"HMDB00294"
],
"inchi_key":[
"XSQUKJJJFZCRTK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00086"
],
"kegg.drug":[
"D01749",
"D10496",
"D00023"
],
"metanetx.chemical":[
"MNXM117"
],
"reactome.compound":[
"374061",
"29514",
"432019"
],
"sabiork":[
"1798"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00073"
]
}
},
{
"id":"glyald_e",
"name":"D-Glyceraldehyde",
"compartment":"e",
"charge":0,
"formula":"C3H6O3",
"notes":{
"original_bigg_ids":[
"glyald_e"
]
},
"annotation":{
"bigg.metabolite":[
"glyald"
],
"biocyc":[
"META:GLYCERALD"
],
"chebi":[
"CHEBI:17378",
"CHEBI:21025",
"CHEBI:4186",
"CHEBI:12982",
"CHEBI:39973"
],
"inchi_key":[
"MNQZXJOMYWMBOU-VKHMYHEASA-N"
],
"kegg.compound":[
"C00577"
],
"metanetx.chemical":[
"MNXM435"
],
"reactome.compound":[
"30393"
],
"sabiork":[
"1409"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00448"
]
}
},
{
"id":"glyb_e",
"name":"Glycine betaine",
"compartment":"e",
"charge":0,
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"glyb_e"
]
},
"annotation":{
"bigg.metabolite":[
"glyb"
],
"biocyc":[
"META:BETAINE"
],
"chebi":[
"CHEBI:27128",
"CHEBI:12531",
"CHEBI:29050",
"CHEBI:15264",
"CHEBI:24370",
"CHEBI:13895",
"CHEBI:41134",
"CHEBI:22858",
"CHEBI:41139",
"CHEBI:3073",
"CHEBI:17750"
],
"hmdb":[
"HMDB00043",
"HMDB59606"
],
"inchi_key":[
"KWIUHFFTVRNATP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00719"
],
"kegg.drug":[
"D07523"
],
"metanetx.chemical":[
"MNXM289"
],
"reactome.compound":[
"352015",
"6798202"
],
"sabiork":[
"5196"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00540"
]
}
},
{
"id":"man6p_e",
"name":"D-Mannose 6-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"man6p_e"
]
},
"annotation":{
"bigg.metabolite":[
"man6p"
],
"biocyc":[
"META:Mannose-6-phosphate",
"META:CPD-15980",
"META:CPD-15979"
],
"chebi":[
"CHEBI:58735",
"CHEBI:48042",
"CHEBI:48066",
"CHEBI:4211",
"CHEBI:13000",
"CHEBI:17369"
],
"inchi_key":[
"NBSCHQHZLSJFNQ-QTVWNMPRSA-L"
],
"kegg.compound":[
"C00275"
],
"metanetx.chemical":[
"MNXM427"
],
"reactome.compound":[
"532562"
],
"sabiork":[
"1323",
"24709"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00235"
]
}
},
{
"id":"glyc2p_e",
"name":"Glycerol 2-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C3H7O6P",
"notes":{
"original_bigg_ids":[
"glyc2p_e"
]
},
"annotation":{
"bigg.metabolite":[
"glyc2p"
],
"biocyc":[
"META:CPD-536"
],
"chebi":[
"CHEBI:26704",
"CHEBI:17270",
"CHEBI:5451",
"CHEBI:14337",
"CHEBI:58083",
"CHEBI:42620"
],
"hmdb":[
"HMDB02520"
],
"inchi_key":[
"DHCLVCXQIBBOPH-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02979"
],
"metanetx.chemical":[
"MNXM2527"
],
"sabiork":[
"1729"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01908"
]
}
},
{
"id":"uri_e",
"name":"Uridine",
"compartment":"e",
"charge":0,
"formula":"C9H12N2O6",
"notes":{
"original_bigg_ids":[
"uri_e"
]
},
"annotation":{
"bigg.metabolite":[
"uri"
],
"biocyc":[
"META:URIDINE"
],
"chebi":[
"CHEBI:46386",
"CHEBI:9893",
"CHEBI:46460",
"CHEBI:16704",
"CHEBI:46391",
"CHEBI:15296",
"CHEBI:46463",
"CHEBI:27227"
],
"hmdb":[
"HMDB00296"
],
"inchi_key":[
"DRTQHJPVMGBUCF-XVFCMESISA-N"
],
"kegg.compound":[
"C00299"
],
"metanetx.chemical":[
"MNXM288"
],
"sabiork":[
"1326"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00249"
]
}
},
{
"id":"man_e",
"name":"D-Mannose",
"compartment":"e",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"man_e"
]
},
"annotation":{
"bigg.metabolite":[
"man"
],
"biocyc":[
"META:D-mannopyranose"
],
"chebi":[
"CHEBI:4208",
"CHEBI:37684",
"CHEBI:14575",
"CHEBI:16024",
"CHEBI:21057",
"CHEBI:33930",
"CHEBI:12999"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c5f931e8-e7f7-4b73-bed6-48662796fe18"
],
"hmdb":[
"HMDB00169"
],
"inchi_key":[
"WQZGKKKJIJFFOK-QTVWNMPRSA-N"
],
"kegg.compound":[
"C00159"
],
"metanetx.chemical":[
"MNXM182"
],
"reactome.compound":[
"964752",
"6799594",
"429579"
],
"sabiork":[
"1656"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00138",
"cpd27437"
]
}
},
{
"id":"val__L_e",
"name":"L-Valine",
"compartment":"e",
"charge":0,
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"val_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"val__L"
],
"biocyc":[
"META:VAL"
],
"chebi":[
"CHEBI:32859",
"CHEBI:57762",
"CHEBI:13186",
"CHEBI:16414",
"CHEBI:6321",
"CHEBI:21417",
"CHEBI:46418",
"CHEBI:46282",
"CHEBI:32852",
"CHEBI:32851",
"CHEBI:87977",
"CHEBI:32860",
"CHEBI:27266",
"CHEBI:46376",
"CHEBI:46484"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b2ec1d47-f20f-4b19-9b15-ac1a3c2159c5",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/65a4c231-5232-4f08-93e2-007eb0537f0e"
],
"hmdb":[
"HMDB00883",
"HMDB34366"
],
"inchi_key":[
"KZSNJWFQEVHDMF-BYPYZUCNSA-N"
],
"kegg.compound":[
"C16436",
"C00183"
],
"kegg.drug":[
"D00039"
],
"lipidmaps":[
"LMFA01100046"
],
"metanetx.chemical":[
"MNXM199"
],
"reactome.compound":[
"113540",
"29702"
],
"sabiork":[
"68",
"23113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15141",
"cpd00156"
]
}
},
{
"id":"glyc3p_e",
"name":"Glycerol 3-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C3H7O6P",
"notes":{
"original_bigg_ids":[
"glyc3p_e"
]
},
"annotation":{
"bigg.metabolite":[
"glyc3p"
],
"biocyc":[
"META:GLYCEROL-3P"
],
"chebi":[
"CHEBI:12843",
"CHEBI:26705",
"CHEBI:57597",
"CHEBI:12848",
"CHEBI:42793",
"CHEBI:10648",
"CHEBI:15978"
],
"hmdb":[
"HMDB02722",
"HMDB00126"
],
"inchi_key":[
"AWUCVROLDVIAJX-GSVOUGTGSA-L"
],
"kegg.compound":[
"C00093"
],
"metanetx.chemical":[
"MNXM66"
],
"reactome.compound":[
"188458",
"76114"
],
"sabiork":[
"1296"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00080"
]
}
},
{
"id":"manglyc_e",
"name":"2(alpha-D-Mannosyl)-D-glycerate",
"compartment":"e",
"charge":-1,
"formula":"C9H15O9",
"notes":{
"original_bigg_ids":[
"manglyc_e"
]
},
"annotation":{
"bigg.metabolite":[
"manglyc"
],
"biocyc":[
"META:2-O-ALPHA-MANNOSYL-D-GLYCERATE"
],
"chebi":[
"CHEBI:11403",
"CHEBI:57541",
"CHEBI:851",
"CHEBI:15847"
],
"inchi_key":[
"DDXCFDOPXBPUJC-SAYMMRJXSA-M"
],
"kegg.compound":[
"C11544"
],
"metanetx.chemical":[
"MNXM1624"
],
"sabiork":[
"13606"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08374"
]
}
},
{
"id":"glyc__R_e",
"name":"(R)-Glycerate",
"compartment":"e",
"charge":-1,
"formula":"C3H5O4",
"notes":{
"original_bigg_ids":[
"glyc_R_e"
]
},
"annotation":{
"bigg.metabolite":[
"glyc__R"
],
"biocyc":[
"META:GLYCERATE"
],
"chebi":[
"CHEBI:21030",
"CHEBI:24348",
"CHEBI:10999",
"CHEBI:21027",
"CHEBI:41990",
"CHEBI:33846",
"CHEBI:33508",
"CHEBI:4187",
"CHEBI:24349",
"CHEBI:12985",
"CHEBI:33871",
"CHEBI:16659",
"CHEBI:32398"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/6be053c1-d456-4f14-a62a-26231b127f45",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/42fb796b-d2e8-4cf9-ba19-d4d843d29da0"
],
"hmdb":[
"HMDB31818",
"HMDB00139"
],
"inchi_key":[
"RBNPOMFGQQGHHO-UWTATZPHSA-M"
],
"kegg.compound":[
"C00258"
],
"metanetx.chemical":[
"MNXM189"
],
"reactome.compound":[
"6799497"
],
"sabiork":[
"3917",
"1999"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00223"
]
}
},
{
"id":"xan_e",
"name":"Xanthine",
"compartment":"e",
"charge":0,
"formula":"C5H4N4O2",
"notes":{
"original_bigg_ids":[
"xan_e"
]
},
"annotation":{
"bigg.metabolite":[
"xan"
],
"biocyc":[
"META:XANTHINE"
],
"chebi":[
"CHEBI:15318",
"CHEBI:10059",
"CHEBI:46377",
"CHEBI:48517",
"CHEBI:17712",
"CHEBI:27317"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3cf4dbf8-ae84-49e6-b294-b5138cb94f75"
],
"hmdb":[
"HMDB00292"
],
"inchi_key":[
"LRFVTYWOQMYALW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00385"
],
"metanetx.chemical":[
"MNXM174"
],
"reactome.compound":[
"30064"
],
"sabiork":[
"1871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00309"
]
}
},
{
"id":"melib_e",
"name":"Melibiose C12H22O11",
"compartment":"e",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"melib_e"
]
},
"annotation":{
"bigg.metabolite":[
"melib"
],
"biocyc":[
"META:MELIBIOSE"
],
"chebi":[
"CHEBI:61827"
],
"inchi_key":[
"DLRVVLDZNNYCBX-ZZFZYMBESA-N"
],
"kegg.glycan":[
"G00835"
],
"metanetx.chemical":[
"MNXM8340"
],
"sbo":"SBO:0000247"
}
},
{
"id":"xmp_e",
"name":"Xanthosine 5'-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C10H11N4O9P",
"notes":{
"original_bigg_ids":[
"xmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"xmp"
],
"biocyc":[
"META:XANTHOSINE-5-PHOSPHATE"
],
"chebi":[
"CHEBI:10938",
"CHEBI:57464",
"CHEBI:27328",
"CHEBI:15324",
"CHEBI:10067",
"CHEBI:15652"
],
"hmdb":[
"HMDB01554",
"HMDB62755"
],
"inchi_key":[
"DCTLYFZHFGENCW-UUOKFMHZSA-L"
],
"kegg.compound":[
"C00655"
],
"metanetx.chemical":[
"MNXM298"
],
"reactome.compound":[
"111584"
],
"sabiork":[
"1686"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00497"
]
}
},
{
"id":"glyc_e",
"name":"Glycerol",
"compartment":"e",
"charge":0,
"formula":"C3H8O3",
"notes":{
"original_bigg_ids":[
"glyc_e"
]
},
"annotation":{
"bigg.metabolite":[
"glyc"
],
"biocyc":[
"META:GLYCEROL"
],
"chebi":[
"CHEBI:5448",
"CHEBI:14334",
"CHEBI:42998",
"CHEBI:17754",
"CHEBI:24351",
"CHEBI:131422"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/48edd8a9-6a4a-4900-b0cf-97b1ccaa1125",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2e8c8093-3269-46b3-be2e-f1df9fdde25c"
],
"hmdb":[
"HMDB00131"
],
"inchi_key":[
"PEDCQBHIVMGVHV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00116"
],
"kegg.drug":[
"D00028"
],
"metanetx.chemical":[
"MNXM89612"
],
"reactome.compound":[
"192438",
"76116"
],
"sabiork":[
"1303"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00100"
]
}
},
{
"id":"met__D_e",
"name":"D-Methionine",
"compartment":"e",
"charge":0,
"formula":"C5H10NO2S",
"notes":{
"original_bigg_ids":[
"met_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"met__D"
],
"biocyc":[
"META:CPD-218"
],
"chebi":[
"CHEBI:57932",
"CHEBI:13005",
"CHEBI:44071",
"CHEBI:21065",
"CHEBI:4215",
"CHEBI:16867",
"CHEBI:32638",
"CHEBI:32637"
],
"inchi_key":[
"FFEARJCKVFRZRR-SCSAIBSYSA-N"
],
"kegg.compound":[
"C00855"
],
"metanetx.chemical":[
"MNXM1275"
],
"sabiork":[
"2171"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00637"
]
}
},
{
"id":"glyclt_e",
"name":"Glycolate C2H3O3",
"compartment":"e",
"charge":-1,
"formula":"C2H3O3",
"notes":{
"original_bigg_ids":[
"glyclt_e"
]
},
"annotation":{
"bigg.metabolite":[
"glyclt"
],
"biocyc":[
"META:GLYCOLLATE"
],
"chebi":[
"CHEBI:24388",
"CHEBI:5475",
"CHEBI:17497",
"CHEBI:14348",
"CHEBI:24390",
"CHEBI:29805",
"CHEBI:42865"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/65f8bf08-1b83-49cd-8f44-8591a6b78f5f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/fadcee01-99f5-4203-9a94-43ad453f2124",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a241561-612f-4e82-99c8-d4ce30c862bf",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/8b8341da-ab0c-4974-87a5-7515166e2965"
],
"hmdb":[
"HMDB03035",
"HMDB00115"
],
"inchi_key":[
"AEMRFAOFKBGASW-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00160"
],
"metanetx.chemical":[
"MNXM222"
],
"reactome.compound":[
"389822"
],
"sabiork":[
"1953"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12347",
"cpd00139"
]
}
},
{
"id":"xtsn_e",
"name":"Xanthosine",
"compartment":"e",
"charge":0,
"formula":"C10H12N4O6",
"notes":{
"original_bigg_ids":[
"xtsn_e"
]
},
"annotation":{
"bigg.metabolite":[
"xtsn"
],
"biocyc":[
"META:XANTHOSINE"
],
"chebi":[
"CHEBI:15323",
"CHEBI:27327",
"CHEBI:18107",
"CHEBI:10066"
],
"hmdb":[
"HMDB00299"
],
"inchi_key":[
"UBORTCNDUKBEOP-UUOKFMHZSA-N"
],
"kegg.compound":[
"C01762"
],
"metanetx.chemical":[
"MNXM687"
],
"sabiork":[
"1878"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01217"
]
}
},
{
"id":"met__L_e",
"name":"L-Methionine",
"compartment":"e",
"charge":0,
"formula":"C5H11NO2S",
"notes":{
"original_bigg_ids":[
"met_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"met__L"
],
"biocyc":[
"META:MET"
],
"chebi":[
"CHEBI:32644",
"CHEBI:32631",
"CHEBI:21360",
"CHEBI:6271",
"CHEBI:14590",
"CHEBI:16811",
"CHEBI:25229",
"CHEBI:32632",
"CHEBI:6829",
"CHEBI:57844",
"CHEBI:32646",
"CHEBI:64558",
"CHEBI:16643",
"CHEBI:13141",
"CHEBI:43990"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/44a61812-39ff-48f9-bf09-8398e8723d5e"
],
"hmdb":[
"HMDB00696",
"HMDB33951"
],
"inchi_key":[
"FFEARJCKVFRZRR-BYPYZUCNSA-N"
],
"kegg.compound":[
"C01733",
"C00073"
],
"kegg.drug":[
"D04984",
"D04983",
"D00019"
],
"metanetx.chemical":[
"MNXM61"
],
"reactome.compound":[
"379705",
"1130765",
"174390"
],
"sabiork":[
"77",
"2315"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00060",
"cpd30746"
]
}
},
{
"id":"xyl__D_e",
"name":"D-Xylose",
"compartment":"e",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"xyl_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"xyl__D"
],
"biocyc":[
"META:D-Xylopyranose"
],
"chebi":[
"CHEBI:65327",
"CHEBI:53455"
],
"hmdb":[
"HMDB00098",
"HMDB03763"
],
"inchi_key":[
"SRBFZHDQGSBBOR-IOVATXLUSA-N"
],
"kegg.compound":[
"C00181"
],
"kegg.drug":[
"D06346"
],
"metanetx.chemical":[
"MNXM348"
],
"reactome.compound":[
"2090063"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00154"
]
}
},
{
"id":"gmp_e",
"name":"GMP C10H12N5O8P",
"compartment":"e",
"charge":-2,
"formula":"C10H12N5O8P",
"notes":{
"original_bigg_ids":[
"gmp_e"
]
},
"annotation":{
"bigg.metabolite":[
"gmp"
],
"biocyc":[
"META:GMP"
],
"chebi":[
"CHEBI:24449",
"CHEBI:47450",
"CHEBI:58115",
"CHEBI:17345",
"CHEBI:29058",
"CHEBI:13341",
"CHEBI:42979",
"CHEBI:40119",
"CHEBI:42615",
"CHEBI:14381",
"CHEBI:24450",
"CHEBI:42892",
"CHEBI:5228",
"CHEBI:42831",
"CHEBI:42887",
"CHEBI:42647"
],
"hmdb":[
"HMDB01397"
],
"inchi_key":[
"RQFCJASXJCIDSX-UUOKFMHZSA-L"
],
"kegg.compound":[
"C00144"
],
"metanetx.chemical":[
"MNXM113"
],
"sabiork":[
"1309"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00126"
]
}
},
{
"id":"gsn_e",
"name":"Guanosine",
"compartment":"e",
"charge":0,
"formula":"C10H13N5O5",
"notes":{
"original_bigg_ids":[
"gsn_e"
]
},
"annotation":{
"bigg.metabolite":[
"gsn"
],
"biocyc":[
"META:GUANOSINE"
],
"chebi":[
"CHEBI:14375",
"CHEBI:16750",
"CHEBI:42853",
"CHEBI:24444",
"CHEBI:42847",
"CHEBI:471737",
"CHEBI:42840",
"CHEBI:5564"
],
"hmdb":[
"HMDB00133"
],
"inchi_key":[
"NYHBQMYGNKIUIF-UUOKFMHZSA-N"
],
"kegg.compound":[
"C00387"
],
"metanetx.chemical":[
"MNXM401"
],
"sabiork":[
"1872"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00311"
]
}
},
{
"id":"metsox_R__L_e",
"name":"L-methionine-R-sulfoxide",
"compartment":"e",
"charge":0,
"formula":"C5H11NO3S",
"notes":{
"original_bigg_ids":[
"metsox_R_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"metsox_R__L"
],
"biocyc":[
"META:CPD-8990"
],
"chebi":[
"CHEBI:49032",
"CHEBI:58773"
],
"inchi_key":[
"QEFRNWWLZKMPFJ-ZXPFJRLXSA-N"
],
"kegg.compound":[
"C15998"
],
"metanetx.chemical":[
"MNXM2245"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14720",
"cpd15497"
]
}
},
{
"id":"gthox_e",
"name":"Oxidized glutathione",
"compartment":"e",
"charge":-2,
"formula":"C20H30N6O12S2",
"notes":{
"original_bigg_ids":[
"gthox_e"
]
},
"annotation":{
"bigg.metabolite":[
"gthox"
],
"biocyc":[
"META:OXIDIZED-GLUTATHIONE"
],
"chebi":[
"CHEBI:42832",
"CHEBI:14328",
"CHEBI:17858",
"CHEBI:24336",
"CHEBI:7840",
"CHEBI:58297",
"CHEBI:14720"
],
"hmdb":[
"HMDB03337"
],
"inchi_key":[
"YPZRWBKMTBYPTK-BJDJZHNGSA-L"
],
"kegg.compound":[
"C00127"
],
"kegg.drug":[
"D00031"
],
"metanetx.chemical":[
"MNXM151"
],
"reactome.compound":[
"1655882",
"111745",
"3341331"
],
"sabiork":[
"1939"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00111"
]
}
},
{
"id":"xylu__L_e",
"name":"L-Xylulose",
"compartment":"e",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"xylu_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"xylu__L"
],
"biocyc":[
"META:L-XYLULOSE"
],
"chebi":[
"CHEBI:13190",
"CHEBI:17399",
"CHEBI:6326",
"CHEBI:27353",
"CHEBI:21425"
],
"hmdb":[
"HMDB00751",
"HMDB02245"
],
"inchi_key":[
"ZAQJHHRNXZUBTE-WVZVXSGGSA-N"
],
"kegg.compound":[
"C00312"
],
"metanetx.chemical":[
"MNXM1282"
],
"reactome.compound":[
"5660036"
],
"sabiork":[
"1505",
"23128"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00261"
]
}
},
{
"id":"metsox_S__L_e",
"name":"L-Methionine Sulfoxide",
"compartment":"e",
"charge":0,
"formula":"C5H11NO3S",
"notes":{
"original_bigg_ids":[
"metsox_S_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"metsox_S__L"
],
"biocyc":[
"META:L-Methionine-sulfoxides"
],
"chebi":[
"CHEBI:6272",
"CHEBI:17016",
"CHEBI:13142",
"CHEBI:21361"
],
"inchi_key":[
"QEFRNWWLZKMPFJ-YGVKFDHGSA-N"
],
"kegg.compound":[
"C02989"
],
"metanetx.chemical":[
"MNXM2246"
],
"reactome.compound":[
"5676943"
],
"sabiork":[
"2611"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01914",
"cpd15498",
"cpd29319"
]
}
},
{
"id":"zn2_e",
"name":"Zinc",
"compartment":"e",
"charge":2,
"formula":"Zn",
"notes":{
"original_bigg_ids":[
"zn2_e"
]
},
"annotation":{
"bigg.metabolite":[
"zn2"
],
"biocyc":[
"META:ZN+2"
],
"chebi":[
"CHEBI:49982",
"CHEBI:49972",
"CHEBI:29105",
"CHEBI:27368",
"CHEBI:10113"
],
"hmdb":[
"HMDB01303"
],
"inchi_key":[
"PTFCDOFLOPIGGS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00038"
],
"metanetx.chemical":[
"MNXM149"
],
"reactome.compound":[
"216667",
"437093",
"29426",
"216785",
"435350",
"442320",
"158417"
],
"sabiork":[
"1281"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00034"
]
}
},
{
"id":"gthrd_e",
"name":"Reduced glutathione",
"compartment":"e",
"charge":-1,
"formula":"C10H16N3O6S",
"notes":{
"original_bigg_ids":[
"gthrd_e"
]
},
"annotation":{
"bigg.metabolite":[
"gthrd"
],
"biocyc":[
"META:GLUTATHIONE"
],
"chebi":[
"CHEBI:43049",
"CHEBI:14327",
"CHEBI:16856",
"CHEBI:57925",
"CHEBI:12402",
"CHEBI:24334",
"CHEBI:5437",
"CHEBI:42873"
],
"hmdb":[
"HMDB01463",
"HMDB62697",
"HMDB00125",
"HMDB06960"
],
"inchi_key":[
"RWSXRVCMGQZWBV-WDSKDSINSA-M"
],
"kegg.compound":[
"C00051"
],
"kegg.drug":[
"D00014"
],
"metanetx.chemical":[
"MNXM57"
],
"reactome.compound":[
"1247892",
"1500783",
"1655887",
"29450",
"158543"
],
"sabiork":[
"1926"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00042"
]
}
},
{
"id":"mg2_e",
"name":"Magnesium",
"compartment":"e",
"charge":2,
"formula":"Mg",
"notes":{
"original_bigg_ids":[
"mg2_e"
]
},
"annotation":{
"bigg.metabolite":[
"mg2"
],
"biocyc":[
"META:MG+2"
],
"chebi":[
"CHEBI:6635",
"CHEBI:18420",
"CHEBI:13379",
"CHEBI:39127",
"CHEBI:25112",
"CHEBI:49736"
],
"hmdb":[
"HMDB00547"
],
"inchi_key":[
"JLVVSXFLKOJNIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00305"
],
"metanetx.chemical":[
"MNXM653"
],
"reactome.compound":[
"29926",
"114632",
"5336432",
"109496"
],
"sabiork":[
"1327"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00254"
]
}
},
{
"id":"gtp_e",
"name":"GTP C10H12N5O14P3",
"compartment":"e",
"charge":-4,
"formula":"C10H12N5O14P3",
"notes":{
"original_bigg_ids":[
"gtp_e"
]
},
"annotation":{
"bigg.metabolite":[
"gtp"
],
"biocyc":[
"META:GTP"
],
"chebi":[
"CHEBI:37565",
"CHEBI:15996",
"CHEBI:13342",
"CHEBI:57600",
"CHEBI:5234",
"CHEBI:42934",
"CHEBI:24451"
],
"hmdb":[
"HMDB01273"
],
"inchi_key":[
"XKMLYUALXHKNFT-UUOKFMHZSA-J"
],
"kegg.compound":[
"C00044"
],
"metanetx.chemical":[
"MNXM51"
],
"reactome.compound":[
"113573",
"29438"
],
"sabiork":[
"1282"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00038"
]
}
},
{
"id":"2ohph_c",
"name":"2-Octaprenyl-6-hydroxyphenol",
"compartment":"c",
"charge":0,
"formula":"C46H70O2",
"notes":{
"original_bigg_ids":[
"2ohph_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ohph"
],
"biocyc":[
"META:2-OCTAPRENYL-6-HYDROXYPHENOL"
],
"chebi":[
"CHEBI:62730",
"CHEBI:1233"
],
"inchi_key":[
"YGTMSXVYLRCOLD-MGDAWYEDSA-N"
],
"kegg.compound":[
"C05811"
],
"metanetx.chemical":[
"MNXM1635"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03445"
]
}
},
{
"id":"minohp_e",
"name":"Myo-Inositol hexakisphosphate",
"compartment":"e",
"charge":-12,
"formula":"C6H6O24P6",
"notes":{
"original_bigg_ids":[
"minohp_e"
]
},
"annotation":{
"bigg.metabolite":[
"minohp"
],
"biocyc":[
"META:MI-HEXAKISPHOSPHATE"
],
"chebi":[
"CHEBI:19200",
"CHEBI:17401",
"CHEBI:11366",
"CHEBI:10603",
"CHEBI:12829",
"CHEBI:58130",
"CHEBI:12832"
],
"hmdb":[
"HMDB03502",
"HMDB60271"
],
"inchi_key":[
"IMQLKJBTEOYOSI-GPIVLXJGSA-B"
],
"kegg.compound":[
"C01204"
],
"metanetx.chemical":[
"MNXM491"
],
"reactome.compound":[
"2024018",
"1629770",
"2023929"
],
"sabiork":[
"5443"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00885"
]
}
},
{
"id":"mlthf_c",
"name":"5,10-Methylenetetrahydrofolate",
"compartment":"c",
"charge":-2,
"formula":"C20H21N7O6",
"notes":{
"original_bigg_ids":[
"mlthf_c"
]
},
"annotation":{
"bigg.metabolite":[
"mlthf"
],
"biocyc":[
"META:METHYLENE-THF"
],
"chebi":[
"CHEBI:10925",
"CHEBI:15636",
"CHEBI:1989",
"CHEBI:18602"
],
"inchi_key":[
"QYNUQALWYRSVHF-OLZOCXBDSA-L"
],
"kegg.compound":[
"C00143"
],
"metanetx.chemical":[
"MNXM183"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gua_e",
"name":"Guanine",
"compartment":"e",
"charge":0,
"formula":"C5H5N5O",
"notes":{
"original_bigg_ids":[
"gua_e"
]
},
"annotation":{
"bigg.metabolite":[
"gua"
],
"biocyc":[
"META:GUANINE"
],
"chebi":[
"CHEBI:16235",
"CHEBI:14371",
"CHEBI:42948",
"CHEBI:14372",
"CHEBI:24443",
"CHEBI:5563"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/b5208daa-3750-4745-b4ed-179fb9d4fcfd"
],
"hmdb":[
"HMDB00132"
],
"inchi_key":[
"UYTPUPDQBNUYGX-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00242"
],
"metanetx.chemical":[
"MNXM259"
],
"reactome.compound":[
"83956"
],
"sabiork":[
"59"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00207"
]
}
},
{
"id":"mmet_e",
"name":"S-Methyl-L-methionine",
"compartment":"e",
"charge":1,
"formula":"C6H14NO2S",
"notes":{
"original_bigg_ids":[
"mmet_e"
]
},
"annotation":{
"bigg.metabolite":[
"mmet"
],
"biocyc":[
"META:CPD-397"
],
"chebi":[
"CHEBI:17728",
"CHEBI:58252",
"CHEBI:22057",
"CHEBI:12772",
"CHEBI:67050",
"CHEBI:8965"
],
"inchi_key":[
"YDBYJHTYSHBBAU-YFKPBYRVSA-O"
],
"kegg.compound":[
"C03172"
],
"metanetx.chemical":[
"MNXM1119"
],
"reactome.compound":[
"4789070"
],
"sabiork":[
"2689"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02027"
]
}
},
{
"id":"mn2_e",
"name":"Manganese",
"compartment":"e",
"charge":2,
"formula":"Mn",
"notes":{
"original_bigg_ids":[
"mn2_e"
]
},
"annotation":{
"bigg.metabolite":[
"mn2"
],
"biocyc":[
"META:MN+2"
],
"chebi":[
"CHEBI:21435",
"CHEBI:25156",
"CHEBI:29035",
"CHEBI:49749"
],
"hmdb":[
"HMDB01333"
],
"inchi_key":[
"WAEMQWOKJMHJLA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19610"
],
"metanetx.chemical":[
"MNXM2255"
],
"reactome.compound":[
"29418",
"1981162"
],
"sabiork":[
"1279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20863",
"cpd00030"
]
}
},
{
"id":"phe__L_c",
"name":"L-Phenylalanine",
"compartment":"c",
"charge":0,
"formula":"C9H11NO2",
"notes":{
"original_bigg_ids":[
"phe_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"phe__L"
],
"biocyc":[
"META:PHE"
],
"chebi":[
"CHEBI:21370",
"CHEBI:32505",
"CHEBI:13151",
"CHEBI:32504",
"CHEBI:32486",
"CHEBI:44885",
"CHEBI:58095",
"CHEBI:45079",
"CHEBI:28044",
"CHEBI:6282",
"CHEBI:32487",
"CHEBI:8089",
"CHEBI:76052",
"CHEBI:17295",
"CHEBI:25984",
"CHEBI:44851"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/447fdbbc-919c-4e8d-aed3-c0533f3e6047",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/c1b55d6f-7946-4f39-9dc6-ac0f47865b8b"
],
"hmdb":[
"HMDB00159",
"HMDB00612"
],
"inchi_key":[
"COLNVLDHVKWLRT-QMMMGPOBSA-N"
],
"kegg.compound":[
"C00079",
"C02057"
],
"kegg.drug":[
"D00021"
],
"metanetx.chemical":[
"MNXM97"
],
"reactome.compound":[
"29502",
"379701",
"351993"
],
"sabiork":[
"2365",
"83"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00066",
"cpd01400"
]
}
},
{
"id":"mnl_e",
"name":"D-Mannitol",
"compartment":"e",
"charge":0,
"formula":"C6H14O6",
"notes":{
"original_bigg_ids":[
"mnl_e"
]
},
"annotation":{
"bigg.metabolite":[
"mnl"
],
"biocyc":[
"META:MANNITOL"
],
"chebi":[
"CHEBI:29864",
"CHEBI:6686",
"CHEBI:44192",
"CHEBI:21050",
"CHEBI:25163",
"CHEBI:130180",
"CHEBI:14574",
"CHEBI:12996",
"CHEBI:16899"
],
"hmdb":[
"HMDB00765",
"HMDB01363"
],
"inchi_key":[
"FBPFZTCFMRRESA-KVTDHHQDSA-N"
],
"kegg.compound":[
"C00392"
],
"kegg.drug":[
"D00062"
],
"metanetx.chemical":[
"MNXM615"
],
"sabiork":[
"2037",
"3932"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00314"
]
}
},
{
"id":"thr__L_c",
"name":"L-Threonine",
"compartment":"c",
"charge":0,
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"thr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"thr__L"
],
"biocyc":[
"META:THR"
],
"chebi":[
"CHEBI:16857",
"CHEBI:42083",
"CHEBI:32822",
"CHEBI:45843",
"CHEBI:57926",
"CHEBI:21403",
"CHEBI:32833",
"CHEBI:32820",
"CHEBI:13175",
"CHEBI:6308",
"CHEBI:45983",
"CHEBI:32832",
"CHEBI:26986"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b570a573-71c2-4661-a517-6ac1b121dc59"
],
"hmdb":[
"HMDB00167"
],
"inchi_key":[
"AYFVYJQAPQTCCC-GBXIJSLDSA-N"
],
"kegg.compound":[
"C00188"
],
"kegg.drug":[
"D00041"
],
"metanetx.chemical":[
"MNXM142"
],
"reactome.compound":[
"352000",
"351990",
"379706"
],
"sabiork":[
"76",
"27463"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00161"
]
}
},
{
"id":"fe3dhbzs_c",
"name":"Ferric 2,3-dihydroxybenzoylserine",
"compartment":"c",
"charge":2,
"formula":"C10FeH11NO6",
"notes":{
"original_bigg_ids":[
"fe3dhbzs_c"
]
},
"annotation":{
"bigg.metabolite":[
"fe3dhbzs"
],
"inchi_key":[
"IHUQSEJNRLOEKL-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM5748"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15460"
]
}
},
{
"id":"fe3dhbzs_p",
"name":"Ferric 2,3-dihydroxybenzoylserine",
"compartment":"p",
"charge":2,
"formula":"C10FeH11NO6",
"notes":{
"original_bigg_ids":[
"fe3dhbzs_p"
]
},
"annotation":{
"bigg.metabolite":[
"fe3dhbzs"
],
"inchi_key":[
"IHUQSEJNRLOEKL-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM5748"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15460"
]
}
},
{
"id":"mobd_e",
"name":"Molybdate",
"compartment":"e",
"charge":-2,
"formula":"MoO4",
"notes":{
"original_bigg_ids":[
"mobd_e"
]
},
"annotation":{
"bigg.metabolite":[
"mobd"
],
"biocyc":[
"META:CPD-3"
],
"chebi":[
"CHEBI:36263",
"CHEBI:25368",
"CHEBI:36264",
"CHEBI:25371",
"CHEBI:6967"
],
"hmdb":[
"HMDB12260"
],
"inchi_key":[
"MEFBJEMVZONFCJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06232"
],
"metanetx.chemical":[
"MNXM1026"
],
"reactome.compound":[
"947561"
],
"sabiork":[
"8470"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11574"
]
}
},
{
"id":"fe3hox_c",
"name":"Fe(III)hydroxamate",
"compartment":"c",
"charge":0,
"formula":"C9H18O6N3Fe",
"notes":{
"original_bigg_ids":[
"fe3hox_c"
]
},
"annotation":{
"bigg.metabolite":[
"fe3hox"
],
"biocyc":[
"META:CPD0-2114"
],
"chebi":[
"CHEBI:21131",
"CHEBI:4992",
"CHEBI:28163"
],
"kegg.compound":[
"C06227"
],
"metanetx.chemical":[
"MNXM57764"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12843"
]
}
},
{
"id":"pe161_p",
"name":"Phosphatidylethanolamine (dihexadec-9enoyl, n-C16:1)",
"compartment":"p",
"charge":0,
"formula":"C37H70N1O8P1",
"notes":{
"original_bigg_ids":[
"pe161_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe161"
],
"biocyc":[
"META:CPD-17086"
],
"hmdb":[
"HMDB05342",
"HMDB08957"
],
"lipidmaps":[
"LMGP02010108"
],
"metanetx.chemical":[
"MNXM71458"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29055"
],
"slm":[
"000034897"
]
}
},
{
"id":"mso3_e",
"name":"Methanesulfonate",
"compartment":"e",
"charge":-1,
"formula":"CH3O3S",
"notes":{
"original_bigg_ids":[
"mso3_e"
]
},
"annotation":{
"bigg.metabolite":[
"mso3"
],
"biocyc":[
"META:CPD-3746"
],
"chebi":[
"CHEBI:6813",
"CHEBI:27376",
"CHEBI:25224"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/08e4702f-d7fe-43da-9a21-5771459eab73"
],
"inchi_key":[
"AFVFQIVMOAPDHO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C11145"
],
"metanetx.chemical":[
"MNXM1485"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08023"
]
}
},
{
"id":"leu__L_c",
"name":"L-Leucine",
"compartment":"c",
"charge":0,
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"leu_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"leu__L"
],
"biocyc":[
"META:LEU"
],
"chebi":[
"CHEBI:32620",
"CHEBI:25017",
"CHEBI:43695",
"CHEBI:21348",
"CHEBI:13131",
"CHEBI:43733",
"CHEBI:43646",
"CHEBI:43814",
"CHEBI:6260",
"CHEBI:32628",
"CHEBI:32627",
"CHEBI:10866",
"CHEBI:57427",
"CHEBI:32619",
"CHEBI:15603"
],
"hmdb":[
"HMDB00687",
"HMDB62203"
],
"inchi_key":[
"ROHFNLRQFUQHCH-YFKPBYRVSA-N"
],
"kegg.compound":[
"C16439",
"C00123"
],
"kegg.drug":[
"D00030"
],
"lipidmaps":[
"LMFA01100048"
],
"metanetx.chemical":[
"MNXM140"
],
"reactome.compound":[
"29588",
"113580",
"351964"
],
"sabiork":[
"21059",
"69"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00107",
"cpd15143"
]
}
},
{
"id":"fe3hox_un_c",
"name":"Fe(III)hydoxamate, unloaded",
"compartment":"c",
"charge":-3,
"formula":"C9H18O6N3",
"notes":{
"original_bigg_ids":[
"fe3hox_un_c"
]
},
"annotation":{
"bigg.metabolite":[
"fe3hox_un"
],
"biocyc":[
"META:CPD0-2175"
],
"metanetx.chemical":[
"MNXM90823"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15461"
]
}
},
{
"id":"n2o_e",
"name":"Nitrous oxide",
"compartment":"e",
"charge":0,
"formula":"N2O",
"notes":{
"original_bigg_ids":[
"n2o_e"
]
},
"annotation":{
"bigg.metabolite":[
"n2o"
],
"biocyc":[
"META:NITROUS-OXIDE"
],
"chebi":[
"CHEBI:14661",
"CHEBI:25568",
"CHEBI:7598",
"CHEBI:17045",
"CHEBI:44250"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/27f4cd6e-d42f-484e-8813-ef9e60aa5bf0"
],
"hmdb":[
"HMDB35807"
],
"inchi_key":[
"GQPLMRYTRLFLPF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00887"
],
"kegg.drug":[
"D00102"
],
"metanetx.chemical":[
"MNXM579"
],
"sabiork":[
"2179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00659"
]
}
},
{
"id":"fe3hox_un_p",
"name":"Fe(III)hydoxamate, unloaded",
"compartment":"p",
"charge":-3,
"formula":"C9H18O6N3",
"notes":{
"original_bigg_ids":[
"fe3hox_un_p"
]
},
"annotation":{
"bigg.metabolite":[
"fe3hox_un"
],
"biocyc":[
"META:CPD0-2175"
],
"metanetx.chemical":[
"MNXM90823"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15461"
]
}
},
{
"id":"his__L_c",
"name":"L-Histidine",
"compartment":"c",
"charge":0,
"formula":"C6H9N3O2",
"notes":{
"original_bigg_ids":[
"his_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"his__L"
],
"biocyc":[
"META:HIS"
],
"chebi":[
"CHEBI:43239",
"CHEBI:32529",
"CHEBI:43048",
"CHEBI:5733",
"CHEBI:32530",
"CHEBI:27570",
"CHEBI:32531",
"CHEBI:43118",
"CHEBI:32513",
"CHEBI:15971",
"CHEBI:43190",
"CHEBI:21324",
"CHEBI:32512",
"CHEBI:32511",
"CHEBI:13117",
"CHEBI:43114",
"CHEBI:32510",
"CHEBI:6240",
"CHEBI:32532",
"CHEBI:57595",
"CHEBI:24598"
],
"hmdb":[
"HMDB00177",
"HMDB03412"
],
"inchi_key":[
"HNDVDQJCIGZPNO-YFKPBYRVSA-N"
],
"kegg.compound":[
"C00768",
"C00135"
],
"kegg.drug":[
"D00032"
],
"metanetx.chemical":[
"MNXM134"
],
"reactome.compound":[
"379695",
"29612"
],
"sabiork":[
"2151",
"81"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00119",
"cpd00572"
]
}
},
{
"id":"na1_e",
"name":"Sodium",
"compartment":"e",
"charge":1,
"formula":"Na",
"notes":{
"original_bigg_ids":[
"na1_e"
]
},
"annotation":{
"bigg.metabolite":[
"na1"
],
"biocyc":[
"META:NA+"
],
"chebi":[
"CHEBI:9175",
"CHEBI:49766",
"CHEBI:26717",
"CHEBI:29101"
],
"hmdb":[
"HMDB00588"
],
"inchi_key":[
"FKNQFGJONOIPTF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01330"
],
"metanetx.chemical":[
"MNXM27"
],
"reactome.compound":[
"2892454",
"83910",
"74113",
"425977",
"425971",
"2872443",
"425958"
],
"sabiork":[
"22"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00971"
]
}
},
{
"id":"tyr__L_c",
"name":"L-Tyrosine",
"compartment":"c",
"charge":0,
"formula":"C9H11NO3",
"notes":{
"original_bigg_ids":[
"tyr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"tyr__L"
],
"biocyc":[
"META:TYR"
],
"chebi":[
"CHEBI:6313",
"CHEBI:21411",
"CHEBI:46070",
"CHEBI:9800",
"CHEBI:32786",
"CHEBI:15277",
"CHEBI:32761",
"CHEBI:32784",
"CHEBI:46161",
"CHEBI:13181",
"CHEBI:32760",
"CHEBI:58315",
"CHEBI:32762",
"CHEBI:27176",
"CHEBI:17895",
"CHEBI:18186",
"CHEBI:32785"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/974bd9b7-53fb-48cd-aaf3-6bd3196c0365"
],
"hmdb":[
"HMDB00647",
"HMDB00158"
],
"inchi_key":[
"OUYCCCASQSFEME-QMMMGPOBSA-N"
],
"kegg.compound":[
"C00082",
"C01536"
],
"kegg.drug":[
"D00022"
],
"metanetx.chemical":[
"MNXM76"
],
"reactome.compound":[
"379710",
"5668567",
"352030",
"29506"
],
"sabiork":[
"84",
"2291"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30745",
"cpd00069"
]
}
},
{
"id":"fe3hox_p",
"name":"Fe(III)hydroxamate",
"compartment":"p",
"charge":0,
"formula":"C9H18O6N3Fe",
"notes":{
"original_bigg_ids":[
"fe3hox_p"
]
},
"annotation":{
"bigg.metabolite":[
"fe3hox"
],
"biocyc":[
"META:CPD0-2114"
],
"chebi":[
"CHEBI:21131",
"CHEBI:4992",
"CHEBI:28163"
],
"kegg.compound":[
"C06227"
],
"metanetx.chemical":[
"MNXM57764"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12843"
]
}
},
{
"id":"nac_e",
"name":"Nicotinate",
"compartment":"e",
"charge":-1,
"formula":"C6H4NO2",
"notes":{
"original_bigg_ids":[
"nac_e"
]
},
"annotation":{
"bigg.metabolite":[
"nac"
],
"biocyc":[
"META:NIACINE"
],
"chebi":[
"CHEBI:7559",
"CHEBI:14650",
"CHEBI:32544",
"CHEBI:25538",
"CHEBI:25530",
"CHEBI:22851",
"CHEBI:44319",
"CHEBI:15940"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ed8ac75f-3a91-484c-9d21-d318ef0efef6",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ca85f0e1-e6b7-458b-8f88-d4ed6b580217"
],
"hmdb":[
"HMDB01488"
],
"inchi_key":[
"PVNIIMVLHYAWGP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00253"
],
"kegg.drug":[
"D00049"
],
"metanetx.chemical":[
"MNXM274"
],
"reactome.compound":[
"8869604",
"197230"
],
"sabiork":[
"1994"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00218"
]
}
},
{
"id":"fe3_p",
"name":"Iron (Fe3+)",
"compartment":"p",
"charge":3,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe3_p"
]
},
"annotation":{
"bigg.metabolite":[
"fe3"
],
"biocyc":[
"META:FE+3"
],
"chebi":[
"CHEBI:49595",
"CHEBI:13320",
"CHEBI:24877",
"CHEBI:21130",
"CHEBI:29034",
"CHEBI:34755"
],
"hmdb":[
"HMDB12943"
],
"inchi_key":[
"VTLYFUHAOXGGBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14819"
],
"metanetx.chemical":[
"MNXM196"
],
"reactome.compound":[
"917966",
"111736",
"917943",
"912519",
"912516"
],
"sabiork":[
"1361"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10516"
]
}
},
{
"id":"murein5px4p_p",
"name":"Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C77H117N15O40",
"notes":{
"original_bigg_ids":[
"murein5px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5px4p"
],
"biocyc":[
"META:CPD0-2278"
],
"inchi_key":[
"NQXCJQVWBSGGNW-UHFFFAOYSA-E"
],
"metanetx.chemical":[
"MNXM88338"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15514"
]
}
},
{
"id":"fecrm_un_c",
"name":"Ferrichrome minus Fe(III)",
"compartment":"c",
"charge":-3,
"formula":"C27H42N9O12",
"notes":{
"original_bigg_ids":[
"fecrm_un_c"
]
},
"annotation":{
"bigg.metabolite":[
"fecrm_un"
],
"biocyc":[
"META:CPD0-2205"
],
"inchi_key":[
"ZZDYFKJSJLUQON-UFYCRDLUSA-N"
],
"metanetx.chemical":[
"MNXM53290"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15462"
]
}
},
{
"id":"nh4_e",
"name":"Ammonium",
"compartment":"e",
"charge":1,
"formula":"H4N",
"notes":{
"original_bigg_ids":[
"nh4_e"
]
},
"annotation":{
"bigg.metabolite":[
"nh4"
],
"biocyc":[
"META:AMMONIUM",
"META:AMMONIA"
],
"chebi":[
"CHEBI:44284",
"CHEBI:135980",
"CHEBI:22533",
"CHEBI:13406",
"CHEBI:29337",
"CHEBI:29340",
"CHEBI:13771",
"CHEBI:16134",
"CHEBI:28938",
"CHEBI:22534",
"CHEBI:13405",
"CHEBI:49783",
"CHEBI:7434",
"CHEBI:7435",
"CHEBI:44269",
"CHEBI:44404",
"CHEBI:13407"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/96667bd9-aeae-4e8f-89d3-100d0396af05",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/41e4c903-407f-49f7-bf6b-0a94d39fa3a7",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/27a89bdf-42f7-478f-91d8-e39881581096"
],
"hmdb":[
"HMDB00051",
"HMDB41827"
],
"inchi_key":[
"QGZKDVFQNNGYKY-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00014",
"C01342"
],
"kegg.drug":[
"D02916",
"D02915"
],
"metanetx.chemical":[
"MNXM15"
],
"reactome.compound":[
"5693978",
"1132163",
"29382",
"76230",
"140912",
"389843",
"2022135",
"31633",
"113561"
],
"sabiork":[
"1268",
"43"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19013",
"cpd00013"
]
}
},
{
"id":"fecrm_c",
"name":"Ferrichrome",
"compartment":"c",
"charge":0,
"formula":"C27H42FeN9O12",
"notes":{
"original_bigg_ids":[
"fecrm_c"
]
},
"annotation":{
"bigg.metabolite":[
"fecrm"
],
"biocyc":[
"META:CPD0-2241"
],
"chebi":[
"CHEBI:5019"
],
"inchi_key":[
"GGUNGDGGXMHBMJ-OCIDDWSYSA-N"
],
"kegg.compound":[
"C06228"
],
"metanetx.chemical":[
"MNXM2825"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03724"
]
}
},
{
"id":"k_c",
"name":"Potassium",
"compartment":"c",
"charge":1,
"formula":"K",
"notes":{
"original_bigg_ids":[
"k_c"
]
},
"annotation":{
"bigg.metabolite":[
"k"
],
"biocyc":[
"META:K+"
],
"chebi":[
"CHEBI:26219",
"CHEBI:29103",
"CHEBI:8345",
"CHEBI:49685"
],
"hmdb":[
"HMDB00586"
],
"inchi_key":[
"NPYPAHLBTDXSSS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00238"
],
"kegg.drug":[
"D08403"
],
"metanetx.chemical":[
"MNXM95"
],
"reactome.compound":[
"74126",
"5626313",
"29804"
],
"sabiork":[
"21"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00205"
]
}
},
{
"id":"ni2_e",
"name":"Nickel",
"compartment":"e",
"charge":2,
"formula":"Ni",
"notes":{
"original_bigg_ids":[
"ni2_e"
]
},
"annotation":{
"bigg.metabolite":[
"ni2"
],
"biocyc":[
"META:NI+2"
],
"chebi":[
"CHEBI:25517",
"CHEBI:49785",
"CHEBI:49786"
],
"hmdb":[
"HMDB02457"
],
"inchi_key":[
"VEQPNABPJHWNSG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19609"
],
"metanetx.chemical":[
"MNXM3673"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20862"
]
}
},
{
"id":"mg2_c",
"name":"Magnesium",
"compartment":"c",
"charge":2,
"formula":"Mg",
"notes":{
"original_bigg_ids":[
"mg2_c"
]
},
"annotation":{
"bigg.metabolite":[
"mg2"
],
"biocyc":[
"META:MG+2"
],
"chebi":[
"CHEBI:6635",
"CHEBI:18420",
"CHEBI:13379",
"CHEBI:39127",
"CHEBI:25112",
"CHEBI:49736"
],
"hmdb":[
"HMDB00547"
],
"inchi_key":[
"JLVVSXFLKOJNIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00305"
],
"metanetx.chemical":[
"MNXM653"
],
"reactome.compound":[
"29926",
"114632",
"5336432",
"109496"
],
"sabiork":[
"1327"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00254"
]
}
},
{
"id":"fecrm_un_p",
"name":"Ferrichrome minus Fe(III)",
"compartment":"p",
"charge":-3,
"formula":"C27H42N9O12",
"notes":{
"original_bigg_ids":[
"fecrm_un_p"
]
},
"annotation":{
"bigg.metabolite":[
"fecrm_un"
],
"biocyc":[
"META:CPD0-2205"
],
"inchi_key":[
"ZZDYFKJSJLUQON-UFYCRDLUSA-N"
],
"metanetx.chemical":[
"MNXM53290"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15462"
]
}
},
{
"id":"nmn_e",
"name":"NMN C11H14N2O8P",
"compartment":"e",
"charge":-1,
"formula":"C11H14N2O8P",
"notes":{
"original_bigg_ids":[
"nmn_e"
]
},
"annotation":{
"bigg.metabolite":[
"nmn"
],
"biocyc":[
"META:NICOTINAMIDE_NUCLEOTIDE"
],
"chebi":[
"CHEBI:14648",
"CHEBI:7557",
"CHEBI:14647",
"CHEBI:22850",
"CHEBI:16171",
"CHEBI:10433",
"CHEBI:13409",
"CHEBI:14649",
"CHEBI:18201",
"CHEBI:25522",
"CHEBI:12397",
"CHEBI:14646"
],
"hmdb":[
"HMDB00229",
"HMDB59645"
],
"inchi_key":[
"DAYLJWODMCOQEW-TURQNECASA-M"
],
"kegg.compound":[
"C00455"
],
"metanetx.chemical":[
"MNXM355"
],
"reactome.compound":[
"8869353",
"549282",
"8940067"
],
"sabiork":[
"3871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00355"
]
}
},
{
"id":"fecrm_p",
"name":"Ferrichrome",
"compartment":"p",
"charge":0,
"formula":"C27H42FeN9O12",
"notes":{
"original_bigg_ids":[
"fecrm_p"
]
},
"annotation":{
"bigg.metabolite":[
"fecrm"
],
"biocyc":[
"META:CPD0-2241"
],
"chebi":[
"CHEBI:5019"
],
"inchi_key":[
"GGUNGDGGXMHBMJ-OCIDDWSYSA-N"
],
"kegg.compound":[
"C06228"
],
"metanetx.chemical":[
"MNXM2825"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03724"
]
}
},
{
"id":"pheme_c",
"name":"Protoheme C34H30FeN4O4",
"compartment":"c",
"charge":-2,
"formula":"C34H30FeN4O4",
"notes":{
"original_bigg_ids":[
"pheme_c"
]
},
"annotation":{
"bigg.metabolite":[
"pheme"
],
"biocyc":[
"META:PROTOHEME"
],
"chebi":[
"CHEBI:60344",
"CHEBI:26355",
"CHEBI:17627",
"CHEBI:5651",
"CHEBI:14957"
],
"inchi_key":[
"KABFMIBPWCXCRK-RGGAHWMASA-J"
],
"kegg.compound":[
"C00032"
],
"metanetx.chemical":[
"MNXM249"
],
"reactome.compound":[
"917877",
"71185",
"189444"
],
"sbo":"SBO:0000247"
}
},
{
"id":"no2_e",
"name":"Nitrite",
"compartment":"e",
"charge":-1,
"formula":"NO2",
"notes":{
"original_bigg_ids":[
"no2_e"
]
},
"annotation":{
"bigg.metabolite":[
"no2"
],
"biocyc":[
"META:NITRITE"
],
"chebi":[
"CHEBI:16301",
"CHEBI:14658",
"CHEBI:7585",
"CHEBI:44396",
"CHEBI:25567"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/84af9b8c-5f58-4093-85cb-964ba8ed40b7"
],
"hmdb":[
"HMDB02786"
],
"inchi_key":[
"IOVCWXUNBOPUCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00088"
],
"metanetx.chemical":[
"MNXM107"
],
"reactome.compound":[
"1222379"
],
"sabiork":[
"3058"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00075"
]
}
},
{
"id":"dttp_c",
"name":"DTTP C10H13N2O14P3",
"compartment":"c",
"charge":-4,
"formula":"C10H13N2O14P3",
"notes":{
"original_bigg_ids":[
"dttp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dttp"
],
"biocyc":[
"META:TTP"
],
"chebi":[
"CHEBI:27000",
"CHEBI:37568",
"CHEBI:10530",
"CHEBI:58370",
"CHEBI:14093",
"CHEBI:46175",
"CHEBI:18077"
],
"hmdb":[
"HMDB01342"
],
"inchi_key":[
"NHVNXKFIZYSCEB-XLPZGREQSA-J"
],
"kegg.compound":[
"C00459"
],
"metanetx.chemical":[
"MNXM394"
],
"sabiork":[
"1679"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00357"
]
}
},
{
"id":"feenter_c",
"name":"Fe-enterobactin",
"compartment":"c",
"charge":3,
"formula":"C30H27FeN3O15",
"notes":{
"original_bigg_ids":[
"feenter_c"
]
},
"annotation":{
"bigg.metabolite":[
"feenter"
],
"chebi":[
"CHEBI:4993",
"CHEBI:38151",
"CHEBI:28199",
"CHEBI:70745",
"CHEBI:21133"
],
"inchi_key":[
"NGILTSZTOFYVBF-UVJOBNTFSA-H"
],
"kegg.compound":[
"C06230"
],
"metanetx.chemical":[
"MNXM7354"
],
"reactome.compound":[
"1222421"
],
"sbo":"SBO:0000247"
}
},
{
"id":"feenter_p",
"name":"Fe-enterobactin",
"compartment":"p",
"charge":3,
"formula":"C30H27FeN3O15",
"notes":{
"original_bigg_ids":[
"feenter_p"
]
},
"annotation":{
"bigg.metabolite":[
"feenter"
],
"chebi":[
"CHEBI:4993",
"CHEBI:38151",
"CHEBI:28199",
"CHEBI:70745",
"CHEBI:21133"
],
"inchi_key":[
"NGILTSZTOFYVBF-UVJOBNTFSA-H"
],
"kegg.compound":[
"C06230"
],
"metanetx.chemical":[
"MNXM7354"
],
"reactome.compound":[
"1222421"
],
"sbo":"SBO:0000247"
}
},
{
"id":"no3_e",
"name":"Nitrate",
"compartment":"e",
"charge":-1,
"formula":"NO3",
"notes":{
"original_bigg_ids":[
"no3_e"
]
},
"annotation":{
"bigg.metabolite":[
"no3"
],
"biocyc":[
"META:NITRATE",
"META:CPD-15028"
],
"chebi":[
"CHEBI:44487",
"CHEBI:14654",
"CHEBI:71263",
"CHEBI:7580",
"CHEBI:17632",
"CHEBI:48107",
"CHEBI:25545"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/706be27f-b4cf-4022-b2ef-04cec5197ca5"
],
"hmdb":[
"HMDB02878",
"HMDB01853"
],
"inchi_key":[
"NHNBFGGVMKEFGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00244"
],
"kegg.drug":[
"D02313"
],
"metanetx.chemical":[
"MNXM207"
],
"sabiork":[
"1988"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00209"
]
}
},
{
"id":"enter_p",
"name":"Enterochelin",
"compartment":"p",
"charge":0,
"formula":"C30H27N3O15",
"notes":{
"original_bigg_ids":[
"enter_p"
]
},
"annotation":{
"bigg.metabolite":[
"enter"
],
"biocyc":[
"META:ENTEROBACTIN"
],
"chebi":[
"CHEBI:4799",
"CHEBI:38150",
"CHEBI:28855",
"CHEBI:77805",
"CHEBI:23923"
],
"hmdb":[
"HMDB32199"
],
"inchi_key":[
"SERBHKJMVBATSJ-BZSNNMDCSA-M"
],
"kegg.compound":[
"C05821"
],
"metanetx.chemical":[
"MNXM883"
],
"reactome.compound":[
"1222366"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03453"
]
}
},
{
"id":"fe3_c",
"name":"Iron (Fe3+)",
"compartment":"c",
"charge":3,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe3_c"
]
},
"annotation":{
"bigg.metabolite":[
"fe3"
],
"biocyc":[
"META:FE+3"
],
"chebi":[
"CHEBI:49595",
"CHEBI:13320",
"CHEBI:24877",
"CHEBI:21130",
"CHEBI:29034",
"CHEBI:34755"
],
"hmdb":[
"HMDB12943"
],
"inchi_key":[
"VTLYFUHAOXGGBS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14819"
],
"metanetx.chemical":[
"MNXM196"
],
"reactome.compound":[
"917966",
"111736",
"917943",
"912519",
"912516"
],
"sabiork":[
"1361"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10516"
]
}
},
{
"id":"no_e",
"name":"Nitric oxide",
"compartment":"e",
"charge":0,
"formula":"NO",
"notes":{
"original_bigg_ids":[
"no_e"
]
},
"annotation":{
"bigg.metabolite":[
"no"
],
"biocyc":[
"META:NITRIC-OXIDE"
],
"chebi":[
"CHEBI:16480",
"CHEBI:25546",
"CHEBI:14657",
"CHEBI:44452",
"CHEBI:7583"
],
"hmdb":[
"HMDB03378"
],
"inchi_key":[
"MWUXSHHQAYIFBG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00533"
],
"kegg.drug":[
"D00074"
],
"metanetx.chemical":[
"MNXM228"
],
"sbo":"SBO:0000247"
}
},
{
"id":"dgtp_c",
"name":"DGTP C10H12N5O13P3",
"compartment":"c",
"charge":-4,
"formula":"C10H12N5O13P3",
"notes":{
"original_bigg_ids":[
"dgtp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dgtp"
],
"biocyc":[
"META:DGTP"
],
"chebi":[
"CHEBI:16497",
"CHEBI:57794",
"CHEBI:61429",
"CHEBI:10497",
"CHEBI:19247",
"CHEBI:14076"
],
"hmdb":[
"HMDB01440"
],
"inchi_key":[
"HAAZLUGHYHWQIW-KVQBGUIXSA-J"
],
"kegg.compound":[
"C00286"
],
"metanetx.chemical":[
"MNXM344"
],
"sabiork":[
"1675"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00241"
]
}
},
{
"id":"feoxam_c",
"name":"Generic ferrioxamine-Fe-III",
"compartment":"c",
"charge":1,
"formula":"C25FeH46N6O8",
"notes":{
"original_bigg_ids":[
"feoxam_c"
]
},
"annotation":{
"bigg.metabolite":[
"feoxam"
],
"biocyc":[
"META:CPD0-2124"
],
"chebi":[
"CHEBI:5044"
],
"inchi_key":[
"SRMBQCVUAVULDJ-UHFFFAOYSA-O"
],
"kegg.compound":[
"C07597"
],
"lipidmaps":[
"LMFA08020175"
],
"metanetx.chemical":[
"MNXM162837"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04761"
]
}
},
{
"id":"o2_e",
"name":"O2 O2",
"compartment":"e",
"charge":0,
"formula":"O2",
"notes":{
"original_bigg_ids":[
"o2_e"
]
},
"annotation":{
"bigg.metabolite":[
"o2"
],
"biocyc":[
"META:OXYGEN-MOLECULE"
],
"chebi":[
"CHEBI:7860",
"CHEBI:26689",
"CHEBI:29097",
"CHEBI:15379",
"CHEBI:13416",
"CHEBI:27140",
"CHEBI:29793",
"CHEBI:30491",
"CHEBI:44742",
"CHEBI:23833",
"CHEBI:25366",
"CHEBI:10745"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/d5d12248-82d3-4cf3-b7d0-2e3d096768b4"
],
"hmdb":[
"HMDB01377"
],
"inchi_key":[
"MYMOFIZGZYHOMD-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00007"
],
"kegg.drug":[
"D00003"
],
"metanetx.chemical":[
"MNXM4"
],
"reactome.compound":[
"113534",
"113535",
"113685",
"5668566",
"189461",
"113533",
"1131511",
"352327",
"351593",
"29368",
"1236709"
],
"sabiork":[
"1264"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00007"
]
}
},
{
"id":"feoxam_un_c",
"name":"Ferroxamine minus Fe(3)",
"compartment":"c",
"charge":-2,
"formula":"C25H46N6O8",
"notes":{
"original_bigg_ids":[
"feoxam_un_c"
]
},
"annotation":{
"bigg.metabolite":[
"feoxam_un"
],
"metanetx.chemical":[
"MNXM90827"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15463"
]
}
},
{
"id":"ile__L_c",
"name":"L-Isoleucine",
"compartment":"c",
"charge":0,
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"ile_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"ile__L"
],
"biocyc":[
"META:ILE"
],
"chebi":[
"CHEBI:43290",
"CHEBI:32604",
"CHEBI:43342",
"CHEBI:32605",
"CHEBI:17191",
"CHEBI:21344",
"CHEBI:13127",
"CHEBI:43366",
"CHEBI:6255",
"CHEBI:32613",
"CHEBI:32612",
"CHEBI:24898",
"CHEBI:58045"
],
"hmdb":[
"HMDB00172"
],
"inchi_key":[
"AGPKZVBTJJNPAG-WHFBIAKZSA-N"
],
"kegg.compound":[
"C00407"
],
"kegg.drug":[
"D00065"
],
"lipidmaps":[
"LMFA01100047"
],
"metanetx.chemical":[
"MNXM231"
],
"reactome.compound":[
"30102",
"113537"
],
"sabiork":[
"70",
"23116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00322"
]
}
},
{
"id":"o2s_e",
"name":"Superoxide anion",
"compartment":"e",
"charge":-1,
"formula":"O2",
"notes":{
"original_bigg_ids":[
"o2s_e"
]
},
"annotation":{
"bigg.metabolite":[
"o2s"
],
"biocyc":[
"META:SUPER-OXIDE"
],
"chebi":[
"CHEBI:25935",
"CHEBI:30492",
"CHEBI:7710",
"CHEBI:18421",
"CHEBI:15143",
"CHEBI:26839"
],
"hmdb":[
"HMDB02168"
],
"inchi_key":[
"OUUQCZGPVNCOIJ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00704"
],
"metanetx.chemical":[
"MNXM330"
],
"reactome.compound":[
"1222461",
"1475048",
"1470070"
],
"sabiork":[
"5191"
],
"sbo":"SBO:0000247"
}
},
{
"id":"so4_c",
"name":"Sulfate",
"compartment":"c",
"charge":-2,
"formula":"O4S",
"notes":{
"original_bigg_ids":[
"so4_c"
]
},
"annotation":{
"bigg.metabolite":[
"so4"
],
"biocyc":[
"META:SULFATE",
"META:HSO4"
],
"chebi":[
"CHEBI:15135",
"CHEBI:45693",
"CHEBI:29199",
"CHEBI:9335",
"CHEBI:16189",
"CHEBI:45687",
"CHEBI:26836",
"CHEBI:45696"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/cf4fcd19-f2cb-4d92-aa67-323762e3b269"
],
"hmdb":[
"HMDB01448"
],
"inchi_key":[
"QAOWNCQODCNURD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00059"
],
"kegg.drug":[
"D05963"
],
"metanetx.chemical":[
"MNXM58"
],
"reactome.compound":[
"174375",
"1606845",
"1609649",
"1614584",
"427648"
],
"sabiork":[
"1759"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29301",
"cpd00048"
]
}
},
{
"id":"feoxam_un_p",
"name":"Ferroxamine minus Fe(3)",
"compartment":"p",
"charge":-2,
"formula":"C25H46N6O8",
"notes":{
"original_bigg_ids":[
"feoxam_un_p"
]
},
"annotation":{
"bigg.metabolite":[
"feoxam_un"
],
"metanetx.chemical":[
"MNXM90827"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15463"
]
}
},
{
"id":"ocdca_e",
"name":"Octadecanoate (n-C18:0)",
"compartment":"e",
"charge":-1,
"formula":"C18H35O2",
"notes":{
"original_bigg_ids":[
"ocdca_e"
]
},
"annotation":{
"bigg.metabolite":[
"ocdca"
],
"biocyc":[
"META:STEARIC_ACID"
],
"chebi":[
"CHEBI:25631",
"CHEBI:231588",
"CHEBI:45710",
"CHEBI:25629",
"CHEBI:28842"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c0fae385-4844-4700-ba7a-96b6726ed216"
],
"hmdb":[
"HMDB00827"
],
"inchi_key":[
"QIQXTHQIDYTFRH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01530"
],
"kegg.drug":[
"D00119"
],
"lipidmaps":[
"LMFA01010018",
"LMFA01010047"
],
"metanetx.chemical":[
"MNXM236"
],
"reactome.compound":[
"428198"
],
"sabiork":[
"20032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01080"
],
"slm":[
"000000826"
]
}
},
{
"id":"feoxam_p",
"name":"Generic ferrioxamine-Fe-III",
"compartment":"p",
"charge":1,
"formula":"C25FeH46N6O8",
"notes":{
"original_bigg_ids":[
"feoxam_p"
]
},
"annotation":{
"bigg.metabolite":[
"feoxam"
],
"biocyc":[
"META:CPD0-2124"
],
"chebi":[
"CHEBI:5044"
],
"inchi_key":[
"SRMBQCVUAVULDJ-UHFFFAOYSA-O"
],
"kegg.compound":[
"C07597"
],
"lipidmaps":[
"LMFA08020175"
],
"metanetx.chemical":[
"MNXM162837"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04761"
]
}
},
{
"id":"thmpp_c",
"name":"Thiamine diphosphate",
"compartment":"c",
"charge":-2,
"formula":"C12H16N4O7P2S",
"notes":{
"original_bigg_ids":[
"thmpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"thmpp"
],
"biocyc":[
"META:THIAMINE-PYROPHOSPHATE"
],
"chebi":[
"CHEBI:15229",
"CHEBI:58937",
"CHEBI:45931",
"CHEBI:45930",
"CHEBI:9532",
"CHEBI:49939"
],
"hmdb":[
"HMDB62636",
"HMDB01372"
],
"inchi_key":[
"AYEKOFBPNLCAJY-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00068"
],
"metanetx.chemical":[
"MNXM256"
],
"reactome.compound":[
"8878387",
"29480"
],
"sabiork":[
"1287"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00056"
]
}
},
{
"id":"mobd_c",
"name":"Molybdate",
"compartment":"c",
"charge":-2,
"formula":"MoO4",
"notes":{
"original_bigg_ids":[
"mobd_c"
]
},
"annotation":{
"bigg.metabolite":[
"mobd"
],
"biocyc":[
"META:CPD-3"
],
"chebi":[
"CHEBI:36263",
"CHEBI:25368",
"CHEBI:36264",
"CHEBI:25371",
"CHEBI:6967"
],
"hmdb":[
"HMDB12260"
],
"inchi_key":[
"MEFBJEMVZONFCJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06232"
],
"metanetx.chemical":[
"MNXM1026"
],
"reactome.compound":[
"947561"
],
"sabiork":[
"8470"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11574"
]
}
},
{
"id":"ocdcea_e",
"name":"Octadecenoate (n-C18:1)",
"compartment":"e",
"charge":-1,
"formula":"C18H33O2",
"notes":{
"original_bigg_ids":[
"ocdcea_e"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcea"
],
"biocyc":[
"META:OLEATE-CPD"
],
"chebi":[
"CHEBI:30823",
"CHEBI:25664",
"CHEBI:16196",
"CHEBI:7741",
"CHEBI:14684",
"CHEBI:104361",
"CHEBI:25663",
"CHEBI:44741"
],
"hmdb":[
"HMDB00207",
"HMDB02066"
],
"inchi_key":[
"ZQPPMHVWECSIRJ-KTKRTIGZSA-M"
],
"kegg.compound":[
"C00712"
],
"kegg.drug":[
"D02315"
],
"lipidmaps":[
"LMFA01030810",
"LMFA01030763",
"LMFA01030002"
],
"metanetx.chemical":[
"MNXM306"
],
"sabiork":[
"2139",
"28897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00536"
],
"slm":[
"000000418"
]
}
},
{
"id":"val__L_c",
"name":"L-Valine",
"compartment":"c",
"charge":0,
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"val_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"val__L"
],
"biocyc":[
"META:VAL"
],
"chebi":[
"CHEBI:32859",
"CHEBI:57762",
"CHEBI:13186",
"CHEBI:16414",
"CHEBI:6321",
"CHEBI:21417",
"CHEBI:46418",
"CHEBI:46282",
"CHEBI:32852",
"CHEBI:32851",
"CHEBI:87977",
"CHEBI:32860",
"CHEBI:27266",
"CHEBI:46376",
"CHEBI:46484"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b2ec1d47-f20f-4b19-9b15-ac1a3c2159c5",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/65a4c231-5232-4f08-93e2-007eb0537f0e"
],
"hmdb":[
"HMDB00883",
"HMDB34366"
],
"inchi_key":[
"KZSNJWFQEVHDMF-BYPYZUCNSA-N"
],
"kegg.compound":[
"C16436",
"C00183"
],
"kegg.drug":[
"D00039"
],
"lipidmaps":[
"LMFA01100046"
],
"metanetx.chemical":[
"MNXM199"
],
"reactome.compound":[
"113540",
"29702"
],
"sabiork":[
"68",
"23113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15141",
"cpd00156"
]
}
},
{
"id":"h2_c",
"name":"Hydrogen",
"compartment":"c",
"charge":0,
"formula":"H2",
"notes":{
"original_bigg_ids":[
"h2_c"
]
},
"annotation":{
"bigg.metabolite":[
"h2"
],
"biocyc":[
"META:HYDROGEN-MOLECULE"
],
"chebi":[
"CHEBI:18276",
"CHEBI:29298",
"CHEBI:29299",
"CHEBI:13350",
"CHEBI:29294",
"CHEBI:25363",
"CHEBI:5785"
],
"hmdb":[
"HMDB01362"
],
"inchi_key":[
"UFHFLCQGNIYNRP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00282"
],
"metanetx.chemical":[
"MNXM195"
],
"reactome.compound":[
"113555"
],
"sabiork":[
"5030"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11640"
]
}
},
{
"id":"octa_e",
"name":"Octanoate (n-C8:0)",
"compartment":"e",
"charge":-1,
"formula":"C8H15O2",
"notes":{
"original_bigg_ids":[
"octa_e"
]
},
"annotation":{
"bigg.metabolite":[
"octa"
],
"biocyc":[
"META:CPD-195"
],
"chebi":[
"CHEBI:25648",
"CHEBI:25646",
"CHEBI:28837",
"CHEBI:3373",
"CHEBI:44501"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2202db6c-dc64-4714-9f17-23dbbb8d637f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/7623a8e3-3436-493a-ad6e-13af00ad46d8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/fa5b4ef6-749e-42db-a909-7c6e56587bdd"
],
"hmdb":[
"HMDB62511",
"HMDB00482"
],
"inchi_key":[
"WWZKQHOCKIZLMA-UHFFFAOYSA-M"
],
"kegg.compound":[
"C06423"
],
"kegg.drug":[
"D05220"
],
"lipidmaps":[
"LMFA01010008"
],
"metanetx.chemical":[
"MNXM750"
],
"sabiork":[
"2889"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03846"
],
"slm":[
"000000853"
]
}
},
{
"id":"trp__L_c",
"name":"L-Tryptophan",
"compartment":"c",
"charge":0,
"formula":"C11H12N2O2",
"notes":{
"original_bigg_ids":[
"trp_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"trp__L"
],
"biocyc":[
"META:TRP"
],
"chebi":[
"CHEBI:13178",
"CHEBI:27163",
"CHEBI:6310",
"CHEBI:9769",
"CHEBI:32728",
"CHEBI:16828",
"CHEBI:27897",
"CHEBI:21407",
"CHEBI:64554",
"CHEBI:46125",
"CHEBI:57912",
"CHEBI:32704",
"CHEBI:46086",
"CHEBI:45988",
"CHEBI:184633",
"CHEBI:46225",
"CHEBI:32727",
"CHEBI:32702"
],
"hmdb":[
"HMDB00929",
"HMDB30396"
],
"inchi_key":[
"QIVBCDIJIAJPQS-VIFPVBQESA-N"
],
"kegg.compound":[
"C00806",
"C00078"
],
"kegg.drug":[
"D00020"
],
"metanetx.chemical":[
"MNXM94"
],
"reactome.compound":[
"379709",
"352006",
"29500"
],
"sabiork":[
"2164",
"85"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19007",
"cpd00065"
]
}
},
{
"id":"orn_e",
"name":"Ornithine",
"compartment":"e",
"charge":1,
"formula":"C5H13N2O2",
"notes":{
"original_bigg_ids":[
"orn_e"
]
},
"annotation":{
"bigg.metabolite":[
"orn"
],
"biocyc":[
"META:L-ORNITHINE"
],
"chebi":[
"CHEBI:21367",
"CHEBI:44667",
"CHEBI:46912",
"CHEBI:11448",
"CHEBI:7784",
"CHEBI:46913",
"CHEBI:19370",
"CHEBI:13148",
"CHEBI:15729",
"CHEBI:32964",
"CHEBI:6280",
"CHEBI:46911",
"CHEBI:46914",
"CHEBI:18257"
],
"hmdb":[
"HMDB62718",
"HMDB04984",
"HMDB00214",
"HMDB00818",
"HMDB32455",
"HMDB62654"
],
"inchi_key":[
"AHLPHDHHMVZTML-BYPYZUCNSA-O"
],
"kegg.compound":[
"C00077",
"C01602"
],
"kegg.drug":[
"D08302"
],
"lipidmaps":[
"LMFA01100057"
],
"metanetx.chemical":[
"MNXM89689"
],
"reactome.compound":[
"29498",
"113586",
"113585"
],
"sabiork":[
"1290"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00064",
"cpd19016"
]
}
},
{
"id":"sheme_c",
"name":"Siroheme C42H36FeN4O16",
"compartment":"c",
"charge":-8,
"formula":"C42H36FeN4O16",
"notes":{
"original_bigg_ids":[
"sheme_c"
]
},
"annotation":{
"bigg.metabolite":[
"sheme"
],
"biocyc":[
"META:SIROHEME"
],
"chebi":[
"CHEBI:9166",
"CHEBI:28599",
"CHEBI:26690",
"CHEBI:60052"
],
"inchi_key":[
"DLKSSIHHLYNIKN-QIISWYHFSA-D"
],
"kegg.compound":[
"C00748"
],
"metanetx.chemical":[
"MNXM82173"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00557"
]
}
},
{
"id":"fldrd_c",
"name":"Flavodoxin (reduced) - obsolete",
"compartment":"c",
"charge":0,
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"fldrd_c"
]
},
"annotation":{
"bigg.metabolite":[
"fldrd"
],
"biocyc":[
"META:Reduced-flavodoxins"
],
"kegg.compound":[
"C02745"
],
"metanetx.chemical":[
"MNXM3707"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12173"
]
}
},
{
"id":"fldox_c",
"name":"Flavodoxin (oxidized) - obsolete",
"compartment":"c",
"charge":0,
"formula":"X",
"notes":{
"original_bigg_ids":[
"fldox_c"
]
},
"annotation":{
"bigg.metabolite":[
"fldox"
],
"biocyc":[
"META:Oxidized-flavodoxins"
],
"kegg.compound":[
"C02869"
],
"metanetx.chemical":[
"MNXM4076"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12207"
]
}
},
{
"id":"orot_e",
"name":"Orotate C5H3N2O4",
"compartment":"e",
"charge":-1,
"formula":"C5H3N2O4",
"notes":{
"original_bigg_ids":[
"orot_e"
]
},
"annotation":{
"bigg.metabolite":[
"orot"
],
"biocyc":[
"META:OROTATE"
],
"chebi":[
"CHEBI:14698",
"CHEBI:7787",
"CHEBI:16742",
"CHEBI:25720",
"CHEBI:44781",
"CHEBI:30839",
"CHEBI:25719"
],
"hmdb":[
"HMDB00226"
],
"inchi_key":[
"PXQPEWDEAKTCGB-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00295"
],
"kegg.drug":[
"D00055"
],
"metanetx.chemical":[
"MNXM235"
],
"reactome.compound":[
"76632"
],
"sabiork":[
"2009"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00247"
]
}
},
{
"id":"fmettrna_c",
"name":"N-Formylmethionyl-tRNA",
"compartment":"c",
"charge":0,
"formula":"C6H9NO2SR",
"notes":{
"original_bigg_ids":[
"fmettrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"fmettrna"
],
"chebi":[
"CHEBI:17119",
"CHEBI:12510",
"CHEBI:12597",
"CHEBI:7283"
],
"kegg.compound":[
"C03294"
],
"metanetx.chemical":[
"MNXM95381"
],
"reactome.compound":[
"5368270",
"5621506"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12285"
]
}
},
{
"id":"mn2_c",
"name":"Manganese",
"compartment":"c",
"charge":2,
"formula":"Mn",
"notes":{
"original_bigg_ids":[
"mn2_c"
]
},
"annotation":{
"bigg.metabolite":[
"mn2"
],
"biocyc":[
"META:MN+2"
],
"chebi":[
"CHEBI:21435",
"CHEBI:25156",
"CHEBI:29035",
"CHEBI:49749"
],
"hmdb":[
"HMDB01333"
],
"inchi_key":[
"WAEMQWOKJMHJLA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19610"
],
"metanetx.chemical":[
"MNXM2255"
],
"reactome.compound":[
"29418",
"1981162"
],
"sabiork":[
"1279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20863",
"cpd00030"
]
}
},
{
"id":"zn2_c",
"name":"Zinc",
"compartment":"c",
"charge":2,
"formula":"Zn",
"notes":{
"original_bigg_ids":[
"zn2_c"
]
},
"annotation":{
"bigg.metabolite":[
"zn2"
],
"biocyc":[
"META:ZN+2"
],
"chebi":[
"CHEBI:49982",
"CHEBI:49972",
"CHEBI:29105",
"CHEBI:27368",
"CHEBI:10113"
],
"hmdb":[
"HMDB01303"
],
"inchi_key":[
"PTFCDOFLOPIGGS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00038"
],
"metanetx.chemical":[
"MNXM149"
],
"reactome.compound":[
"216667",
"437093",
"29426",
"216785",
"435350",
"442320",
"158417"
],
"sabiork":[
"1281"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00034"
]
}
},
{
"id":"mettrna_c",
"name":"L-Methionyl-tRNA (Met)",
"compartment":"c",
"charge":1,
"formula":"C5H10NOSR",
"notes":{
"original_bigg_ids":[
"mettrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"mettrna"
],
"kegg.compound":[
"C02430"
],
"metanetx.chemical":[
"MNXM90636"
],
"sabiork":[
"3852"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12105"
]
}
},
{
"id":"oaa_e",
"name":"Oxaloacetate",
"compartment":"e",
"charge":-2,
"formula":"C4H2O5",
"notes":{
"original_bigg_ids":[
"oaa_e"
]
},
"annotation":{
"bigg.metabolite":[
"oaa"
],
"biocyc":[
"META:OXALACETIC_ACID"
],
"chebi":[
"CHEBI:25731",
"CHEBI:24959",
"CHEBI:12820",
"CHEBI:16452",
"CHEBI:30744",
"CHEBI:14703",
"CHEBI:24958",
"CHEBI:7812",
"CHEBI:25734",
"CHEBI:29049"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/133a11f3-81b0-4384-837e-1ccdd0a2a645",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/40afaad4-431a-4e3c-b4c7-020dbe4bdd2a",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/be7c543c-40bd-4698-9821-22f2e65c38f3"
],
"hmdb":[
"HMDB00223"
],
"inchi_key":[
"KHPXUQMNIQBQEV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00036"
],
"lipidmaps":[
"LMFA01170120"
],
"metanetx.chemical":[
"MNXM46"
],
"reactome.compound":[
"6810070",
"113587",
"76213"
],
"sabiork":[
"1915"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00032"
]
}
},
{
"id":"2dmmq8_c",
"name":"2-Demethylmenaquinone 8",
"compartment":"c",
"charge":0,
"formula":"C50H70O2",
"notes":{
"original_bigg_ids":[
"2dmmq8_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dmmq8"
],
"biocyc":[
"META:DEMETHYLMENAQUINONE"
],
"chebi":[
"CHEBI:48455"
],
"inchi_key":[
"GDUBPWSFXUAETN-AENDIINCSA-N"
],
"lipidmaps":[
"LMPR02030027"
],
"metanetx.chemical":[
"MNXM2178"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15352"
]
}
},
{
"id":"f1p_c",
"name":"D-Fructose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"f1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"f1p"
],
"biocyc":[
"META:D-fructofuranose-1-phosphate"
],
"chebi":[
"CHEBI:37515",
"CHEBI:5174",
"CHEBI:20930",
"CHEBI:58674"
],
"inchi_key":[
"RHKKZBWRNHGJEZ-VRPWFDPXSA-L"
],
"kegg.compound":[
"C01094"
],
"metanetx.chemical":[
"MNXM145568"
],
"sabiork":[
"1458",
"1351"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00802"
]
}
},
{
"id":"udcpdp_c",
"name":"Undecaprenyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C55H89O7P2",
"notes":{
"original_bigg_ids":[
"udcpdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpdp"
],
"biocyc":[
"META:CPD-9649"
],
"chebi":[
"CHEBI:27192",
"CHEBI:53042",
"CHEBI:17047",
"CHEBI:9863",
"CHEBI:57995",
"CHEBI:15284"
],
"hmdb":[
"HMDB01469"
],
"inchi_key":[
"NTXGVHCCXVHYCL-RDQGWRCRSA-K"
],
"lipidmaps":[
"LMPR03030004"
],
"metanetx.chemical":[
"MNXM5043"
],
"sabiork":[
"1757"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25775"
]
}
},
{
"id":"f6p_c",
"name":"D-Fructose 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"f6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"f6p"
],
"biocyc":[
"META:FRUCTOSE-6P"
],
"chebi":[
"CHEBI:16084",
"CHEBI:12352",
"CHEBI:57634",
"CHEBI:22768",
"CHEBI:10375",
"CHEBI:42378"
],
"hmdb":[
"HMDB03971"
],
"inchi_key":[
"BGWGXPAPYGQALX-ARQDHWQXSA-L"
],
"kegg.compound":[
"C05345"
],
"metanetx.chemical":[
"MNXM89621"
],
"sabiork":[
"25"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19035"
]
}
},
{
"id":"fru_c",
"name":"D-Fructose",
"compartment":"c",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"fru_c"
]
},
"annotation":{
"bigg.metabolite":[
"fru"
],
"biocyc":[
"META:D-Fructopyranose",
"META:Fructofuranose",
"META:CPD-15382",
"META:FRU"
],
"chebi":[
"CHEBI:47424",
"CHEBI:28757",
"CHEBI:24110",
"CHEBI:20929",
"CHEBI:4119",
"CHEBI:15824",
"CHEBI:5172",
"CHEBI:24104",
"CHEBI:12923",
"CHEBI:4118",
"CHEBI:37714",
"CHEBI:37721",
"CHEBI:48095"
],
"hmdb":[
"HMDB62538"
],
"inchi_key":[
"RFSUNEUAIZKAJO-VRPWFDPXSA-N"
],
"kegg.compound":[
"C01496",
"C05003",
"C00095",
"C10906"
],
"kegg.drug":[
"D00114"
],
"metanetx.chemical":[
"MNXM175"
],
"reactome.compound":[
"189049",
"29532"
],
"sabiork":[
"25055",
"1463",
"1464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00082",
"cpd19015",
"cpd27040"
]
}
},
{
"id":"frulys_p",
"name":"Fructoselysine",
"compartment":"p",
"charge":1,
"formula":"C12H25N2O7",
"notes":{
"original_bigg_ids":[
"frulys_p"
]
},
"annotation":{
"bigg.metabolite":[
"frulys"
],
"biocyc":[
"META:FRUCTOSELYSINE"
],
"chebi":[
"CHEBI:24109",
"CHEBI:61393",
"CHEBI:63523"
],
"inchi_key":[
"BFSYFTQDGRDJNV-AYHFEMFVSA-O"
],
"kegg.compound":[
"C16488"
],
"metanetx.chemical":[
"MNXM1742"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15466"
]
}
},
{
"id":"pacald_e",
"name":"Phenylacetaldehyde",
"compartment":"e",
"charge":0,
"formula":"C8H8O",
"notes":{
"original_bigg_ids":[
"pacald_e"
]
},
"annotation":{
"bigg.metabolite":[
"pacald"
],
"biocyc":[
"META:PHENYLACETALDEHYDE"
],
"chebi":[
"CHEBI:14778",
"CHEBI:25972",
"CHEBI:43163",
"CHEBI:16424",
"CHEBI:8084"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1df960d5-0487-483b-a8ec-1ffa54a9d8d8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8d55d5ff-00d5-4473-a3f5-d51d063d721a"
],
"hmdb":[
"HMDB06236"
],
"inchi_key":[
"DTUQWGWMVIHBKE-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00601"
],
"metanetx.chemical":[
"MNXM473"
],
"reactome.compound":[
"500607"
],
"sabiork":[
"2112"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00464"
]
}
},
{
"id":"fruur_p",
"name":"D-Fructuronate",
"compartment":"p",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"fruur_p"
]
},
"annotation":{
"bigg.metabolite":[
"fruur"
],
"biocyc":[
"META:FRUCTURONATE"
],
"chebi":[
"CHEBI:47950",
"CHEBI:59881",
"CHEBI:24113",
"CHEBI:16849",
"CHEBI:12927",
"CHEBI:20936",
"CHEBI:59863",
"CHEBI:20937",
"CHEBI:4126",
"CHEBI:24112"
],
"inchi_key":[
"PTCIWUZVDIQTOW-XDJBDKDSSA-M"
],
"kegg.compound":[
"C00905"
],
"metanetx.chemical":[
"MNXM1660"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00672",
"cpd27042"
]
}
},
{
"id":"f6p_p",
"name":"D-Fructose 6-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"f6p_p"
]
},
"annotation":{
"bigg.metabolite":[
"f6p"
],
"biocyc":[
"META:FRUCTOSE-6P"
],
"chebi":[
"CHEBI:16084",
"CHEBI:12352",
"CHEBI:57634",
"CHEBI:22768",
"CHEBI:10375",
"CHEBI:42378"
],
"hmdb":[
"HMDB03971"
],
"inchi_key":[
"BGWGXPAPYGQALX-ARQDHWQXSA-L"
],
"kegg.compound":[
"C05345"
],
"metanetx.chemical":[
"MNXM89621"
],
"sabiork":[
"25"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19035"
]
}
},
{
"id":"peamn_e",
"name":"Phenethylamine",
"compartment":"e",
"charge":1,
"formula":"C8H12N",
"notes":{
"original_bigg_ids":[
"peamn_e"
]
},
"annotation":{
"bigg.metabolite":[
"peamn"
],
"biocyc":[
"META:PHENYLETHYLAMINE"
],
"chebi":[
"CHEBI:8063",
"CHEBI:14782",
"CHEBI:50048",
"CHEBI:25965",
"CHEBI:18397",
"CHEBI:45001",
"CHEBI:225237"
],
"hmdb":[
"HMDB60276",
"HMDB12275"
],
"inchi_key":[
"BHHGXPLMPWCGHP-UHFFFAOYSA-O"
],
"kegg.compound":[
"C05332"
],
"metanetx.chemical":[
"MNXM660"
],
"reactome.compound":[
"500605"
],
"sabiork":[
"2769"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03161"
]
}
},
{
"id":"tdecoa_c",
"name":"Tetradecenoyl-CoA (n-C14:1CoA)",
"compartment":"c",
"charge":-4,
"formula":"C35H56N7O17P3S",
"notes":{
"original_bigg_ids":[
"tdecoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"tdecoa"
],
"metanetx.chemical":[
"MNXM2290"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fru_p",
"name":"D-Fructose",
"compartment":"p",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"fru_p"
]
},
"annotation":{
"bigg.metabolite":[
"fru"
],
"biocyc":[
"META:D-Fructopyranose",
"META:Fructofuranose",
"META:CPD-15382",
"META:FRU"
],
"chebi":[
"CHEBI:47424",
"CHEBI:28757",
"CHEBI:24110",
"CHEBI:20929",
"CHEBI:4119",
"CHEBI:15824",
"CHEBI:5172",
"CHEBI:24104",
"CHEBI:12923",
"CHEBI:4118",
"CHEBI:37714",
"CHEBI:37721",
"CHEBI:48095"
],
"hmdb":[
"HMDB62538"
],
"inchi_key":[
"RFSUNEUAIZKAJO-VRPWFDPXSA-N"
],
"kegg.compound":[
"C01496",
"C05003",
"C00095",
"C10906"
],
"kegg.drug":[
"D00114"
],
"metanetx.chemical":[
"MNXM175"
],
"reactome.compound":[
"189049",
"29532"
],
"sabiork":[
"25055",
"1463",
"1464"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00082",
"cpd19015",
"cpd27040"
]
}
},
{
"id":"hdcoa_c",
"name":"Hexadecenoyl-CoA (n-C16:1CoA)",
"compartment":"c",
"charge":-4,
"formula":"C37H60N7O17P3S",
"notes":{
"original_bigg_ids":[
"hdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hdcoa"
],
"metanetx.chemical":[
"MNXM90167"
],
"sbo":"SBO:0000247"
}
},
{
"id":"phe__L_e",
"name":"L-Phenylalanine",
"compartment":"e",
"charge":0,
"formula":"C9H11NO2",
"notes":{
"original_bigg_ids":[
"phe_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"phe__L"
],
"biocyc":[
"META:PHE"
],
"chebi":[
"CHEBI:21370",
"CHEBI:32505",
"CHEBI:13151",
"CHEBI:32504",
"CHEBI:32486",
"CHEBI:44885",
"CHEBI:58095",
"CHEBI:45079",
"CHEBI:28044",
"CHEBI:6282",
"CHEBI:32487",
"CHEBI:8089",
"CHEBI:76052",
"CHEBI:17295",
"CHEBI:25984",
"CHEBI:44851"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/447fdbbc-919c-4e8d-aed3-c0533f3e6047",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/c1b55d6f-7946-4f39-9dc6-ac0f47865b8b"
],
"hmdb":[
"HMDB00159",
"HMDB00612"
],
"inchi_key":[
"COLNVLDHVKWLRT-QMMMGPOBSA-N"
],
"kegg.compound":[
"C00079",
"C02057"
],
"kegg.drug":[
"D00021"
],
"metanetx.chemical":[
"MNXM97"
],
"reactome.compound":[
"29502",
"379701",
"351993"
],
"sabiork":[
"2365",
"83"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00066",
"cpd01400"
]
}
},
{
"id":"odecoa_c",
"name":"Octadecenoyl-CoA (n-C18:1CoA)",
"compartment":"c",
"charge":-4,
"formula":"C39H64N7O17P3S",
"notes":{
"original_bigg_ids":[
"odecoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"odecoa"
],
"metanetx.chemical":[
"MNXM1848"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fuc__L_p",
"name":"L-Fucose",
"compartment":"p",
"charge":0,
"formula":"C6H12O5",
"notes":{
"original_bigg_ids":[
"fuc_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"fuc__L"
],
"biocyc":[
"META:CPD-15619",
"META:L-fucoses"
],
"chebi":[
"CHEBI:48204"
],
"hmdb":[
"HMDB62489"
],
"inchi_key":[
"PNNNRSAQSRJVSB-KCDKBNATSA-N"
],
"metanetx.chemical":[
"MNXM40586"
],
"reactome.compound":[
"6784249"
],
"sbo":"SBO:0000247"
}
},
{
"id":"mal__L_c",
"name":"L-Malate",
"compartment":"c",
"charge":-2,
"formula":"C4H4O5",
"notes":{
"original_bigg_ids":[
"mal_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"mal__L"
],
"biocyc":[
"META:MAL"
],
"chebi":[
"CHEBI:15589",
"CHEBI:30797",
"CHEBI:423",
"CHEBI:18784",
"CHEBI:18785",
"CHEBI:13140",
"CHEBI:11066"
],
"hmdb":[
"HMDB00156"
],
"inchi_key":[
"BJEPYKJPYRNKOW-REOHCLBHSA-L"
],
"kegg.compound":[
"C00149"
],
"metanetx.chemical":[
"MNXM98"
],
"reactome.compound":[
"198498",
"113544"
],
"sabiork":[
"1918"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00130"
]
}
},
{
"id":"pheme_e",
"name":"Protoheme C34H30FeN4O4",
"compartment":"e",
"charge":-2,
"formula":"C34H30FeN4O4",
"notes":{
"original_bigg_ids":[
"pheme_e"
]
},
"annotation":{
"bigg.metabolite":[
"pheme"
],
"biocyc":[
"META:PROTOHEME"
],
"chebi":[
"CHEBI:60344",
"CHEBI:26355",
"CHEBI:17627",
"CHEBI:5651",
"CHEBI:14957"
],
"inchi_key":[
"KABFMIBPWCXCRK-RGGAHWMASA-J"
],
"kegg.compound":[
"C00032"
],
"metanetx.chemical":[
"MNXM249"
],
"reactome.compound":[
"917877",
"71185",
"189444"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fum_p",
"name":"Fumarate",
"compartment":"p",
"charge":-2,
"formula":"C4H2O4",
"notes":{
"original_bigg_ids":[
"fum_p"
]
},
"annotation":{
"bigg.metabolite":[
"fum"
],
"biocyc":[
"META:FUM"
],
"chebi":[
"CHEBI:36180",
"CHEBI:37155",
"CHEBI:42511",
"CHEBI:5190",
"CHEBI:18012",
"CHEBI:42743",
"CHEBI:22956",
"CHEBI:22957",
"CHEBI:24124",
"CHEBI:14284",
"CHEBI:37154",
"CHEBI:29806",
"CHEBI:22958",
"CHEBI:24122"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/709035ec-4868-4de8-9095-06428f6be14b"
],
"hmdb":[
"HMDB00134"
],
"inchi_key":[
"VZCYOOQTPOCHFL-OWOJBTEDSA-L"
],
"kegg.compound":[
"C00122"
],
"kegg.drug":[
"D02308"
],
"metanetx.chemical":[
"MNXM93"
],
"reactome.compound":[
"113588",
"29586"
],
"sabiork":[
"1910"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00106"
]
}
},
{
"id":"hxa_c",
"name":"Hexanoate (n-C6:0)",
"compartment":"c",
"charge":-1,
"formula":"C6H11O2",
"notes":{
"original_bigg_ids":[
"hxa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hxa"
],
"biocyc":[
"META:HEXANOATE"
],
"chebi":[
"CHEBI:14398",
"CHEBI:24571",
"CHEBI:40213",
"CHEBI:30776",
"CHEBI:17120",
"CHEBI:5702",
"CHEBI:24569"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e4df503e-0f40-4bad-8885-76774b301631"
],
"hmdb":[
"HMDB00535",
"HMDB61883"
],
"inchi_key":[
"FUZZWVXGSFPDMH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01585"
],
"lipidmaps":[
"LMFA01010006"
],
"metanetx.chemical":[
"MNXM1653"
],
"sabiork":[
"2297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01113"
],
"slm":[
"000001196"
]
}
},
{
"id":"pi_e",
"name":"Phosphate",
"compartment":"e",
"charge":-2,
"formula":"HO4P",
"notes":{
"original_bigg_ids":[
"pi_e"
]
},
"annotation":{
"bigg.metabolite":[
"pi"
],
"biocyc":[
"META:Pi",
"META:CPD-16459",
"META:PHOSPHATE-GROUP"
],
"chebi":[
"CHEBI:26078",
"CHEBI:18367",
"CHEBI:29139",
"CHEBI:39739",
"CHEBI:43470",
"CHEBI:35780",
"CHEBI:43474",
"CHEBI:26020",
"CHEBI:45024",
"CHEBI:39745",
"CHEBI:29137",
"CHEBI:14791",
"CHEBI:7793"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/db5219ee-60cb-4370-b066-340c9faf069c",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/84684967-eade-48d4-b25d-c4aede0a0836",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/ad82c39b-2edb-4953-b971-79a2d2ea6e26",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/aac01fea-4223-49c1-8b12-cd50f11ebfc8",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c581b2ce-6238-45de-abc0-60ca8d47ed04"
],
"hmdb":[
"HMDB02105",
"HMDB00973",
"HMDB01429",
"HMDB02142",
"HMDB05947"
],
"inchi_key":[
"NBIIXXVUZAFLBC-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00009"
],
"kegg.drug":[
"D05467"
],
"metanetx.chemical":[
"MNXM9"
],
"reactome.compound":[
"5228339",
"113550",
"8851513",
"113551",
"109277",
"29372",
"8851226",
"113548"
],
"sabiork":[
"36"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27787",
"cpd00009"
]
}
},
{
"id":"ttdca_p",
"name":"Tetradecanoate (n-C14:0)",
"compartment":"p",
"charge":-1,
"formula":"C14H27O2",
"notes":{
"original_bigg_ids":[
"ttdca_p"
]
},
"annotation":{
"bigg.metabolite":[
"ttdca"
],
"metanetx.chemical":[
"MNXM162239"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gam1p_c",
"name":"D-Glucosamine 1-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"gam1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gam1p"
],
"biocyc":[
"META:GLUCOSAMINE-1P"
],
"chebi":[
"CHEBI:12316",
"CHEBI:4163",
"CHEBI:42868",
"CHEBI:20994",
"CHEBI:27625",
"CHEBI:58516"
],
"inchi_key":[
"YMJBYRVFGYXULK-QZABAPFNSA-M"
],
"kegg.compound":[
"C06156"
],
"metanetx.chemical":[
"MNXM969"
],
"sabiork":[
"1854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03671"
]
}
},
{
"id":"pnto__R_e",
"name":"(R)-Pantothenate",
"compartment":"e",
"charge":-1,
"formula":"C9H16NO5",
"notes":{
"original_bigg_ids":[
"pnto_R_e"
]
},
"annotation":{
"bigg.metabolite":[
"pnto__R"
],
"biocyc":[
"META:PANTOTHENATE"
],
"chebi":[
"CHEBI:29032",
"CHEBI:44679",
"CHEBI:25846",
"CHEBI:16454",
"CHEBI:18700",
"CHEBI:11008",
"CHEBI:18701",
"CHEBI:46905",
"CHEBI:14739",
"CHEBI:7916"
],
"hmdb":[
"HMDB00210",
"HMDB62717"
],
"inchi_key":[
"GHOKWGTUZJEAQD-ZETCQYMHSA-M"
],
"kegg.compound":[
"C00864"
],
"kegg.drug":[
"D07413"
],
"metanetx.chemical":[
"MNXM364"
],
"reactome.compound":[
"199192",
"196820"
],
"sabiork":[
"5286"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00644"
]
}
},
{
"id":"acgam1p_c",
"name":"N-Acetyl-D-glucosamine 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H14NO9P",
"notes":{
"original_bigg_ids":[
"acgam1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"acgam1p"
],
"chebi":[
"CHEBI:7125"
],
"hmdb":[
"HMDB01367"
],
"inchi_key":[
"FZLJPEPAYPUMMR-RTRLPJTCSA-L"
],
"kegg.compound":[
"C04256"
],
"metanetx.chemical":[
"MNXM91871"
],
"reactome.compound":[
"532204"
],
"sabiork":[
"1801",
"26400"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02611"
]
}
},
{
"id":"ttdcea_p",
"name":"Tetradecenoate (n-C14:1)",
"compartment":"p",
"charge":-1,
"formula":"C14H25O2",
"notes":{
"original_bigg_ids":[
"ttdcea_p"
]
},
"annotation":{
"bigg.metabolite":[
"ttdcea"
],
"metanetx.chemical":[
"MNXM641"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ppa_e",
"name":"Propionate (n-C3:0)",
"compartment":"e",
"charge":-1,
"formula":"C3H5O2",
"notes":{
"original_bigg_ids":[
"ppa_e"
]
},
"annotation":{
"bigg.metabolite":[
"ppa"
],
"metanetx.chemical":[
"MNXM162260"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hdca_p",
"name":"Hexadecanoate (n-C16:0)",
"compartment":"p",
"charge":-1,
"formula":"C16H31O2",
"notes":{
"original_bigg_ids":[
"hdca_p"
]
},
"annotation":{
"bigg.metabolite":[
"hdca"
],
"biocyc":[
"META:PALMITATE"
],
"chebi":[
"CHEBI:7896",
"CHEBI:24540",
"CHEBI:231736",
"CHEBI:15756",
"CHEBI:44952",
"CHEBI:233028",
"CHEBI:24542",
"CHEBI:14730",
"CHEBI:35978",
"CHEBI:24541",
"CHEBI:24550",
"CHEBI:29889"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc7314a1-8e9a-410f-be4f-f7d8bf32b1cb"
],
"hmdb":[
"HMDB60083",
"HMDB00220"
],
"inchi_key":[
"IPCSVZSSVZVIGE-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00249"
],
"kegg.drug":[
"D05341"
],
"lipidmaps":[
"LMFA01010046",
"LMFA01010001"
],
"metanetx.chemical":[
"MNXM108"
],
"reactome.compound":[
"2453691",
"3632881",
"76168",
"5690516",
"390435",
"426576"
],
"sabiork":[
"1990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00214"
],
"slm":[
"000000510"
]
}
},
{
"id":"hdcea_p",
"name":"Hexadecenoate (n-C16:1)",
"compartment":"p",
"charge":-1,
"formula":"C16H29O2",
"notes":{
"original_bigg_ids":[
"hdcea_p"
]
},
"annotation":{
"bigg.metabolite":[
"hdcea"
],
"metanetx.chemical":[
"MNXM950"
],
"sbo":"SBO:0000247"
}
},
{
"id":"glc__D_p",
"name":"D-Glucose",
"compartment":"p",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"glc_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"glc__D"
],
"biocyc":[
"META:Glucopyranose"
],
"chebi":[
"CHEBI:12965",
"CHEBI:20999",
"CHEBI:4167",
"CHEBI:17634"
],
"hmdb":[
"HMDB00122",
"HMDB06564"
],
"inchi_key":[
"WQZGKKKJIJFFOK-GASJEMHNSA-N"
],
"kegg.compound":[
"C00031"
],
"kegg.drug":[
"D00009"
],
"metanetx.chemical":[
"MNXM41"
],
"sabiork":[
"1406",
"1407"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26821",
"cpd00027"
]
}
},
{
"id":"ppal_e",
"name":"Propanal",
"compartment":"e",
"charge":0,
"formula":"C3H6O",
"notes":{
"original_bigg_ids":[
"ppal_e"
]
},
"annotation":{
"bigg.metabolite":[
"ppal"
],
"biocyc":[
"META:CPD-665"
],
"chebi":[
"CHEBI:45052",
"CHEBI:26281",
"CHEBI:17153",
"CHEBI:41359",
"CHEBI:8468",
"CHEBI:14898"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/de9fac76-182f-497b-8590-df8d5d8e2580",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/deea3c6f-bf3e-49db-ad6d-a405caf96fdd"
],
"hmdb":[
"HMDB03366"
],
"inchi_key":[
"NBBJYMSMWIIQGU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00479"
],
"metanetx.chemical":[
"MNXM821"
],
"sabiork":[
"2056"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00371"
]
}
},
{
"id":"g1p_p",
"name":"D-Glucose 1-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"g1p_p"
]
},
"annotation":{
"bigg.metabolite":[
"g1p"
],
"biocyc":[
"META:D-glucose-1-phosphates",
"META:GLC-1-P"
],
"chebi":[
"CHEBI:10246",
"CHEBI:42623",
"CHEBI:12967",
"CHEBI:12320",
"CHEBI:29042",
"CHEBI:4169",
"CHEBI:58601",
"CHEBI:57629",
"CHEBI:16077",
"CHEBI:21001",
"CHEBI:12970",
"CHEBI:21004"
],
"hmdb":[
"HMDB01586",
"HMDB01306"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-GASJEMHNSA-L"
],
"kegg.compound":[
"C00103"
],
"metanetx.chemical":[
"MNXM89588"
],
"reactome.compound":[
"29548"
],
"sabiork":[
"1450",
"23742",
"1298"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00089",
"cpd28817"
]
}
},
{
"id":"ocdca_p",
"name":"Octadecanoate (n-C18:0)",
"compartment":"p",
"charge":-1,
"formula":"C18H35O2",
"notes":{
"original_bigg_ids":[
"ocdca_p"
]
},
"annotation":{
"bigg.metabolite":[
"ocdca"
],
"biocyc":[
"META:STEARIC_ACID"
],
"chebi":[
"CHEBI:25631",
"CHEBI:231588",
"CHEBI:45710",
"CHEBI:25629",
"CHEBI:28842"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/c0fae385-4844-4700-ba7a-96b6726ed216"
],
"hmdb":[
"HMDB00827"
],
"inchi_key":[
"QIQXTHQIDYTFRH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01530"
],
"kegg.drug":[
"D00119"
],
"lipidmaps":[
"LMFA01010018",
"LMFA01010047"
],
"metanetx.chemical":[
"MNXM236"
],
"reactome.compound":[
"428198"
],
"sabiork":[
"20032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01080"
],
"slm":[
"000000826"
]
}
},
{
"id":"pppn_e",
"name":"Phenylpropanoate",
"compartment":"e",
"charge":-1,
"formula":"C9H9O2",
"notes":{
"original_bigg_ids":[
"pppn_e"
]
},
"annotation":{
"bigg.metabolite":[
"pppn"
],
"biocyc":[
"META:3-PHENYLPROPIONATE"
],
"chebi":[
"CHEBI:20187",
"CHEBI:20186",
"CHEBI:51057",
"CHEBI:8103",
"CHEBI:26005",
"CHEBI:28631",
"CHEBI:26002",
"CHEBI:43112"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/30aa6284-bd6a-41ed-b40d-bdbb4fb60d5f",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/515e549e-edf3-4c3e-b898-1f1754d887f6"
],
"hmdb":[
"HMDB00764"
],
"inchi_key":[
"XMIIGOLPHOKFCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05629"
],
"metanetx.chemical":[
"MNXM1403"
],
"sabiork":[
"20964"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03343"
]
}
},
{
"id":"ocdcea_p",
"name":"Octadecenoate (n-C18:1)",
"compartment":"p",
"charge":-1,
"formula":"C18H33O2",
"notes":{
"original_bigg_ids":[
"ocdcea_p"
]
},
"annotation":{
"bigg.metabolite":[
"ocdcea"
],
"biocyc":[
"META:OLEATE-CPD"
],
"chebi":[
"CHEBI:30823",
"CHEBI:25664",
"CHEBI:16196",
"CHEBI:7741",
"CHEBI:14684",
"CHEBI:104361",
"CHEBI:25663",
"CHEBI:44741"
],
"hmdb":[
"HMDB00207",
"HMDB02066"
],
"inchi_key":[
"ZQPPMHVWECSIRJ-KTKRTIGZSA-M"
],
"kegg.compound":[
"C00712"
],
"kegg.drug":[
"D02315"
],
"lipidmaps":[
"LMFA01030810",
"LMFA01030763",
"LMFA01030002"
],
"metanetx.chemical":[
"MNXM306"
],
"sabiork":[
"2139",
"28897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00536"
],
"slm":[
"000000418"
]
}
},
{
"id":"dtdpglu_c",
"name":"DTDPglucose",
"compartment":"c",
"charge":-2,
"formula":"C16H24N2O16P2",
"notes":{
"original_bigg_ids":[
"dtdpglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdpglu"
],
"biocyc":[
"META:DTDP-D-GLUCOSE"
],
"chebi":[
"CHEBI:57477",
"CHEBI:14091",
"CHEBI:10526",
"CHEBI:10528",
"CHEBI:14089",
"CHEBI:15700",
"CHEBI:23556"
],
"hmdb":[
"HMDB62805"
],
"inchi_key":[
"YSYKRGRSMLTJNL-URARBOGNSA-L"
],
"kegg.compound":[
"C00842"
],
"metanetx.chemical":[
"MNXM1376"
],
"sabiork":[
"3923"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00626"
]
}
},
{
"id":"g1p_c",
"name":"D-Glucose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"g1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"g1p"
],
"biocyc":[
"META:D-glucose-1-phosphates",
"META:GLC-1-P"
],
"chebi":[
"CHEBI:10246",
"CHEBI:42623",
"CHEBI:12967",
"CHEBI:12320",
"CHEBI:29042",
"CHEBI:4169",
"CHEBI:58601",
"CHEBI:57629",
"CHEBI:16077",
"CHEBI:21001",
"CHEBI:12970",
"CHEBI:21004"
],
"hmdb":[
"HMDB01586",
"HMDB01306"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-GASJEMHNSA-L"
],
"kegg.compound":[
"C00103"
],
"metanetx.chemical":[
"MNXM89588"
],
"reactome.compound":[
"29548"
],
"sabiork":[
"1450",
"23742",
"1298"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00089",
"cpd28817"
]
}
},
{
"id":"ppt_e",
"name":"Phosphonate",
"compartment":"e",
"charge":-2,
"formula":"HO3P",
"notes":{
"original_bigg_ids":[
"ppt_e"
]
},
"annotation":{
"bigg.metabolite":[
"ppt"
],
"biocyc":[
"META:PHOSPHONATE",
"META:CPD-12755",
"META:CPD-12756",
"META:X-PHOSPHATE-GROUP"
],
"chebi":[
"CHEBI:29196",
"CHEBI:33462",
"CHEBI:44976",
"CHEBI:26066",
"CHEBI:26081",
"CHEBI:29197",
"CHEBI:16215",
"CHEBI:8154",
"CHEBI:29258",
"CHEBI:39856",
"CHEBI:14820",
"CHEBI:29259",
"CHEBI:45064",
"CHEBI:26067",
"CHEBI:36361",
"CHEBI:45060"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/476ae429-68f2-4547-b4ce-baad8ab3bc26",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/cc4b0b2a-ff3d-4f32-bb67-58801f122f27",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fce7e49c-1b66-4eb2-b13a-154386e984fa"
],
"hmdb":[
"HMDB01443"
],
"inchi_key":[
"ABLZXFCXXLZCGV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C06701"
],
"metanetx.chemical":[
"MNXM1683"
],
"sabiork":[
"2905"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28344",
"cpd04099"
]
}
},
{
"id":"5aop_c",
"name":"5-Amino-4-oxopentanoate",
"compartment":"c",
"charge":0,
"formula":"C5H9NO3",
"notes":{
"original_bigg_ids":[
"5aop_c"
]
},
"annotation":{
"bigg.metabolite":[
"5aop"
],
"biocyc":[
"META:5-AMINO-LEVULINATE"
],
"chebi":[
"CHEBI:20547",
"CHEBI:356416",
"CHEBI:132970",
"CHEBI:12109",
"CHEBI:2034",
"CHEBI:17549"
],
"hmdb":[
"HMDB01149"
],
"inchi_key":[
"ZGXJTSGNIOSYLO-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00430"
],
"kegg.drug":[
"D07567"
],
"lipidmaps":[
"LMFA01100055"
],
"metanetx.chemical":[
"MNXM405"
],
"reactome.compound":[
"189489",
"189466"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00338"
]
}
},
{
"id":"hxa_p",
"name":"Hexanoate (n-C6:0)",
"compartment":"p",
"charge":-1,
"formula":"C6H11O2",
"notes":{
"original_bigg_ids":[
"hxa_p"
]
},
"annotation":{
"bigg.metabolite":[
"hxa"
],
"biocyc":[
"META:HEXANOATE"
],
"chebi":[
"CHEBI:14398",
"CHEBI:24571",
"CHEBI:40213",
"CHEBI:30776",
"CHEBI:17120",
"CHEBI:5702",
"CHEBI:24569"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e4df503e-0f40-4bad-8885-76774b301631"
],
"hmdb":[
"HMDB00535",
"HMDB61883"
],
"inchi_key":[
"FUZZWVXGSFPDMH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01585"
],
"lipidmaps":[
"LMFA01010006"
],
"metanetx.chemical":[
"MNXM1653"
],
"sabiork":[
"2297"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01113"
],
"slm":[
"000001196"
]
}
},
{
"id":"pro__L_e",
"name":"L-Proline",
"compartment":"e",
"charge":0,
"formula":"C5H9NO2",
"notes":{
"original_bigg_ids":[
"pro_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"pro__L"
],
"biocyc":[
"META:PRO"
],
"chebi":[
"CHEBI:26271",
"CHEBI:60039",
"CHEBI:45100",
"CHEBI:13154",
"CHEBI:184637",
"CHEBI:17203",
"CHEBI:21373",
"CHEBI:32862",
"CHEBI:32872",
"CHEBI:45040",
"CHEBI:32871",
"CHEBI:6286",
"CHEBI:32864",
"CHEBI:42067",
"CHEBI:45159",
"CHEBI:58054"
],
"hmdb":[
"HMDB00162"
],
"inchi_key":[
"ONIBWKKTOPOVIA-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00148",
"C16435"
],
"kegg.drug":[
"D00035"
],
"metanetx.chemical":[
"MNXM114"
],
"reactome.compound":[
"352033",
"379717",
"113538"
],
"sabiork":[
"25536",
"82"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00129",
"cpd15140"
]
}
},
{
"id":"octa_p",
"name":"Octanoate (n-C8:0)",
"compartment":"p",
"charge":-1,
"formula":"C8H15O2",
"notes":{
"original_bigg_ids":[
"octa_p"
]
},
"annotation":{
"bigg.metabolite":[
"octa"
],
"biocyc":[
"META:CPD-195"
],
"chebi":[
"CHEBI:25648",
"CHEBI:25646",
"CHEBI:28837",
"CHEBI:3373",
"CHEBI:44501"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2202db6c-dc64-4714-9f17-23dbbb8d637f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/7623a8e3-3436-493a-ad6e-13af00ad46d8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/fa5b4ef6-749e-42db-a909-7c6e56587bdd"
],
"hmdb":[
"HMDB62511",
"HMDB00482"
],
"inchi_key":[
"WWZKQHOCKIZLMA-UHFFFAOYSA-M"
],
"kegg.compound":[
"C06423"
],
"kegg.drug":[
"D05220"
],
"lipidmaps":[
"LMFA01010008"
],
"metanetx.chemical":[
"MNXM750"
],
"sabiork":[
"2889"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03846"
],
"slm":[
"000000853"
]
}
},
{
"id":"fald_p",
"name":"Formaldehyde",
"compartment":"p",
"charge":0,
"formula":"CH2O",
"notes":{
"original_bigg_ids":[
"fald_p"
]
},
"annotation":{
"bigg.metabolite":[
"fald"
],
"biocyc":[
"META:FORMALDEHYDE",
"META:CARBONYL-GROUP"
],
"chebi":[
"CHEBI:16842",
"CHEBI:337763",
"CHEBI:24077",
"CHEBI:14274",
"CHEBI:5142"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/71fc9221-3497-43e5-963c-ecd5390cc239",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/4103a49c-b6c5-4db6-aef3-65b68fd2f6da",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8ee6f55a-4488-4606-b65f-5aead102ccfc"
],
"hmdb":[
"HMDB01426"
],
"inchi_key":[
"WSFSSNUMVMOOMR-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00067"
],
"kegg.drug":[
"D00017"
],
"metanetx.chemical":[
"MNXM56"
],
"reactome.compound":[
"143501",
"29478",
"879250",
"6797920"
],
"sabiork":[
"1928"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00055"
]
}
},
{
"id":"glu1sa_c",
"name":"L-Glutamate 1-semialdehyde",
"compartment":"c",
"charge":0,
"formula":"C5H9NO3",
"notes":{
"original_bigg_ids":[
"glu1sa_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu1sa"
],
"biocyc":[
"META:GLUTAMATE-1-SEMIALDEHYDE"
],
"chebi":[
"CHEBI:24312",
"CHEBI:42823",
"CHEBI:18756",
"CHEBI:404",
"CHEBI:15757",
"CHEBI:11022",
"CHEBI:42827",
"CHEBI:57501"
],
"inchi_key":[
"MPUUQNGXJSEWTF-BYPYZUCNSA-N"
],
"kegg.compound":[
"C03741"
],
"metanetx.chemical":[
"MNXM1453"
],
"sabiork":[
"6826"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02345"
]
}
},
{
"id":"progly_e",
"name":"L-Prolinylglycine",
"compartment":"e",
"charge":0,
"formula":"C7H12N2O3",
"notes":{
"original_bigg_ids":[
"progly_e"
]
},
"annotation":{
"bigg.metabolite":[
"progly"
],
"biocyc":[
"META:CPD0-2182"
],
"chebi":[
"CHEBI:61696",
"CHEBI:61695",
"CHEBI:73594"
],
"inchi_key":[
"RNKSNIBMTUYWSH-YFKPBYRVSA-N"
],
"metanetx.chemical":[
"MNXM7481"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15551"
]
}
},
{
"id":"glyc2p_p",
"name":"Glycerol 2-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C3H7O6P",
"notes":{
"original_bigg_ids":[
"glyc2p_p"
]
},
"annotation":{
"bigg.metabolite":[
"glyc2p"
],
"biocyc":[
"META:CPD-536"
],
"chebi":[
"CHEBI:26704",
"CHEBI:17270",
"CHEBI:5451",
"CHEBI:14337",
"CHEBI:58083",
"CHEBI:42620"
],
"hmdb":[
"HMDB02520"
],
"inchi_key":[
"DHCLVCXQIBBOPH-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02979"
],
"metanetx.chemical":[
"MNXM2527"
],
"sabiork":[
"1729"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01908"
]
}
},
{
"id":"fald_c",
"name":"Formaldehyde",
"compartment":"c",
"charge":0,
"formula":"CH2O",
"notes":{
"original_bigg_ids":[
"fald_c"
]
},
"annotation":{
"bigg.metabolite":[
"fald"
],
"biocyc":[
"META:FORMALDEHYDE",
"META:CARBONYL-GROUP"
],
"chebi":[
"CHEBI:16842",
"CHEBI:337763",
"CHEBI:24077",
"CHEBI:14274",
"CHEBI:5142"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/71fc9221-3497-43e5-963c-ecd5390cc239",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/4103a49c-b6c5-4db6-aef3-65b68fd2f6da",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/8ee6f55a-4488-4606-b65f-5aead102ccfc"
],
"hmdb":[
"HMDB01426"
],
"inchi_key":[
"WSFSSNUMVMOOMR-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00067"
],
"kegg.drug":[
"D00017"
],
"metanetx.chemical":[
"MNXM56"
],
"reactome.compound":[
"143501",
"29478",
"879250",
"6797920"
],
"sabiork":[
"1928"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00055"
]
}
},
{
"id":"psclys_e",
"name":"Psicoselysine",
"compartment":"e",
"charge":1,
"formula":"C12H25N2O7",
"notes":{
"original_bigg_ids":[
"psclys_e"
]
},
"annotation":{
"bigg.metabolite":[
"psclys"
],
"biocyc":[
"META:PSICOSELYSINE"
],
"chebi":[
"CHEBI:61403",
"CHEBI:61425"
],
"inchi_key":[
"BFSYFTQDGRDJNV-CDEVMZEPSA-O"
],
"metanetx.chemical":[
"MNXM6409"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15559"
]
}
},
{
"id":"gthrd_c",
"name":"Reduced glutathione",
"compartment":"c",
"charge":-1,
"formula":"C10H16N3O6S",
"notes":{
"original_bigg_ids":[
"gthrd_c"
]
},
"annotation":{
"bigg.metabolite":[
"gthrd"
],
"biocyc":[
"META:GLUTATHIONE"
],
"chebi":[
"CHEBI:43049",
"CHEBI:14327",
"CHEBI:16856",
"CHEBI:57925",
"CHEBI:12402",
"CHEBI:24334",
"CHEBI:5437",
"CHEBI:42873"
],
"hmdb":[
"HMDB01463",
"HMDB62697",
"HMDB00125",
"HMDB06960"
],
"inchi_key":[
"RWSXRVCMGQZWBV-WDSKDSINSA-M"
],
"kegg.compound":[
"C00051"
],
"kegg.drug":[
"D00014"
],
"metanetx.chemical":[
"MNXM57"
],
"reactome.compound":[
"1247892",
"1500783",
"1655887",
"29450",
"158543"
],
"sabiork":[
"1926"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00042"
]
}
},
{
"id":"glyc3p_c",
"name":"Glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C3H7O6P",
"notes":{
"original_bigg_ids":[
"glyc3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyc3p"
],
"biocyc":[
"META:GLYCEROL-3P"
],
"chebi":[
"CHEBI:12843",
"CHEBI:26705",
"CHEBI:57597",
"CHEBI:12848",
"CHEBI:42793",
"CHEBI:10648",
"CHEBI:15978"
],
"hmdb":[
"HMDB02722",
"HMDB00126"
],
"inchi_key":[
"AWUCVROLDVIAJX-GSVOUGTGSA-L"
],
"kegg.compound":[
"C00093"
],
"metanetx.chemical":[
"MNXM66"
],
"reactome.compound":[
"188458",
"76114"
],
"sabiork":[
"1296"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00080"
]
}
},
{
"id":"g3pc_p",
"name":"Sn-Glycero-3-phosphocholine",
"compartment":"p",
"charge":0,
"formula":"C8H20NO6P",
"notes":{
"original_bigg_ids":[
"g3pc_p"
]
},
"annotation":{
"bigg.metabolite":[
"g3pc"
],
"biocyc":[
"META:L-1-GLYCERO-PHOSPHORYLCHOLINE"
],
"chebi":[
"CHEBI:55397",
"CHEBI:76433",
"CHEBI:26697",
"CHEBI:12847",
"CHEBI:14343",
"CHEBI:10646",
"CHEBI:16870",
"CHEBI:41458",
"CHEBI:12841"
],
"inchi_key":[
"SUHOQUVVVLNYQR-MRVPVSSYSA-N"
],
"kegg.compound":[
"C00670"
],
"kegg.drug":[
"D07349"
],
"metanetx.chemical":[
"MNXM367"
],
"reactome.compound":[
"1498750"
],
"sabiork":[
"5173"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00507"
]
}
},
{
"id":"pser__L_e",
"name":"O-Phospho-L-serine",
"compartment":"e",
"charge":-2,
"formula":"C3H6NO6P",
"notes":{
"original_bigg_ids":[
"pser_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"pser__L"
],
"biocyc":[
"META:3-P-SERINE"
],
"chebi":[
"CHEBI:57524",
"CHEBI:12718",
"CHEBI:15811",
"CHEBI:21966",
"CHEBI:7692"
],
"hmdb":[
"HMDB00272"
],
"inchi_key":[
"BZQFBWGGLXLEPQ-REOHCLBHSA-L"
],
"kegg.compound":[
"C01005"
],
"metanetx.chemical":[
"MNXM379"
],
"reactome.compound":[
"936706"
],
"sabiork":[
"2212"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00738"
]
}
},
{
"id":"g3pc_c",
"name":"Sn-Glycero-3-phosphocholine",
"compartment":"c",
"charge":0,
"formula":"C8H20NO6P",
"notes":{
"original_bigg_ids":[
"g3pc_c"
]
},
"annotation":{
"bigg.metabolite":[
"g3pc"
],
"biocyc":[
"META:L-1-GLYCERO-PHOSPHORYLCHOLINE"
],
"chebi":[
"CHEBI:55397",
"CHEBI:76433",
"CHEBI:26697",
"CHEBI:12847",
"CHEBI:14343",
"CHEBI:10646",
"CHEBI:16870",
"CHEBI:41458",
"CHEBI:12841"
],
"inchi_key":[
"SUHOQUVVVLNYQR-MRVPVSSYSA-N"
],
"kegg.compound":[
"C00670"
],
"kegg.drug":[
"D07349"
],
"metanetx.chemical":[
"MNXM367"
],
"reactome.compound":[
"1498750"
],
"sabiork":[
"5173"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00507"
]
}
},
{
"id":"hmgth_c",
"name":"Hydroxymethylglutathione",
"compartment":"c",
"charge":-1,
"formula":"C11H18N3O7S",
"notes":{
"original_bigg_ids":[
"hmgth_c"
]
},
"annotation":{
"bigg.metabolite":[
"hmgth"
],
"biocyc":[
"META:S-HYDROXYMETHYLGLUTATHIONE"
],
"chebi":[
"CHEBI:48926",
"CHEBI:22052",
"CHEBI:58758",
"CHEBI:40619",
"CHEBI:34963"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fee99d5c-735f-4808-89ec-dbadb58f766c"
],
"hmdb":[
"HMDB04662"
],
"inchi_key":[
"PIUSLWSYOYFRFR-BQBZGAKWSA-M"
],
"kegg.compound":[
"C14180"
],
"metanetx.chemical":[
"MNXM1051"
],
"reactome.compound":[
"5692221"
],
"sabiork":[
"20730"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd09879",
"cpd15487"
]
}
},
{
"id":"ptrc_e",
"name":"Putrescine",
"compartment":"e",
"charge":2,
"formula":"C4H14N2",
"notes":{
"original_bigg_ids":[
"ptrc_e"
]
},
"annotation":{
"bigg.metabolite":[
"ptrc"
],
"biocyc":[
"META:PUTRESCINE"
],
"chebi":[
"CHEBI:8650",
"CHEBI:17148",
"CHEBI:45092",
"CHEBI:26405",
"CHEBI:14972",
"CHEBI:326268"
],
"hmdb":[
"HMDB01414",
"HMDB60243"
],
"inchi_key":[
"KIDHWZJUCRJVML-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00134"
],
"metanetx.chemical":[
"MNXM118"
],
"reactome.compound":[
"29610",
"141350"
],
"sabiork":[
"1941"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00118",
"cpd12215"
]
}
},
{
"id":"dhap_c",
"name":"Dihydroxyacetone phosphate",
"compartment":"c",
"charge":-2,
"formula":"C3H5O6P",
"notes":{
"original_bigg_ids":[
"dhap_c"
]
},
"annotation":{
"bigg.metabolite":[
"dhap"
],
"biocyc":[
"META:DIHYDROXY-ACETONE-PHOSPHATE"
],
"chebi":[
"CHEBI:14341",
"CHEBI:5454",
"CHEBI:16108",
"CHEBI:14342",
"CHEBI:24355",
"CHEBI:39571",
"CHEBI:57642"
],
"hmdb":[
"HMDB11735",
"HMDB01473"
],
"inchi_key":[
"GNGACRATGGDKBX-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00111"
],
"metanetx.chemical":[
"MNXM77"
],
"reactome.compound":[
"390404",
"75970",
"188451"
],
"sabiork":[
"28"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00095"
]
}
},
{
"id":"g3pe_c",
"name":"Sn-Glycero-3-phosphoethanolamine",
"compartment":"c",
"charge":0,
"formula":"C5H14NO6P",
"notes":{
"original_bigg_ids":[
"g3pe_c"
]
},
"annotation":{
"bigg.metabolite":[
"g3pe"
],
"biocyc":[
"META:L-1-GLYCEROPHOSPHORYLETHANOL-AMINE"
],
"chebi":[
"CHEBI:57952",
"CHEBI:10647",
"CHEBI:12842",
"CHEBI:16929",
"CHEBI:26699"
],
"hmdb":[
"HMDB59660"
],
"inchi_key":[
"JZNWSCPGTDBMEW-YFKPBYRVSA-N"
],
"kegg.compound":[
"C01233"
],
"metanetx.chemical":[
"MNXM368"
],
"reactome.compound":[
"1524023"
],
"sabiork":[
"3824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00908"
]
}
},
{
"id":"pyr_e",
"name":"Pyruvate",
"compartment":"e",
"charge":-1,
"formula":"C3H3O3",
"notes":{
"original_bigg_ids":[
"pyr_e"
]
},
"annotation":{
"bigg.metabolite":[
"pyr"
],
"biocyc":[
"META:PYRUVATE"
],
"chebi":[
"CHEBI:26462",
"CHEBI:26466",
"CHEBI:8685",
"CHEBI:32816",
"CHEBI:45253",
"CHEBI:14987",
"CHEBI:15361"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ccc99777-54dc-42d4-a97e-009b780d3905",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc01020e-8c7e-4087-9f56-cf8c962b7437"
],
"hmdb":[
"HMDB00243"
],
"inchi_key":[
"LCTONWCANYUPML-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00022"
],
"lipidmaps":[
"LMFA01060077"
],
"metanetx.chemical":[
"MNXM23"
],
"reactome.compound":[
"1130930",
"5357717",
"113557",
"29398",
"389680"
],
"sabiork":[
"33"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00020"
]
}
},
{
"id":"g3pe_p",
"name":"Sn-Glycero-3-phosphoethanolamine",
"compartment":"p",
"charge":0,
"formula":"C5H14NO6P",
"notes":{
"original_bigg_ids":[
"g3pe_p"
]
},
"annotation":{
"bigg.metabolite":[
"g3pe"
],
"biocyc":[
"META:L-1-GLYCEROPHOSPHORYLETHANOL-AMINE"
],
"chebi":[
"CHEBI:57952",
"CHEBI:10647",
"CHEBI:12842",
"CHEBI:16929",
"CHEBI:26699"
],
"hmdb":[
"HMDB59660"
],
"inchi_key":[
"JZNWSCPGTDBMEW-YFKPBYRVSA-N"
],
"kegg.compound":[
"C01233"
],
"metanetx.chemical":[
"MNXM368"
],
"reactome.compound":[
"1524023"
],
"sabiork":[
"3824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00908"
]
}
},
{
"id":"fdp_c",
"name":"D-Fructose 1,6-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C6H10O12P2",
"notes":{
"original_bigg_ids":[
"fdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"fdp"
],
"chebi":[
"CHEBI:37736",
"CHEBI:49299"
],
"inchi_key":[
"RNBGYGVWRKECFJ-VRPWFDPXSA-J"
],
"kegg.compound":[
"C00354"
],
"metanetx.chemical":[
"MNXM417"
],
"sabiork":[
"1465"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00290"
]
}
},
{
"id":"r5p_e",
"name":"Alpha-D-Ribose 5-phosphate",
"compartment":"e",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"r5p_e"
]
},
"annotation":{
"bigg.metabolite":[
"r5p"
],
"biocyc":[
"META:CPD-15318"
],
"chebi":[
"CHEBI:18189",
"CHEBI:22413",
"CHEBI:12331",
"CHEBI:10270"
],
"inchi_key":[
"KTVPXOYAKDPRHY-AIHAYLRMSA-L"
],
"kegg.compound":[
"C03736"
],
"metanetx.chemical":[
"MNXM15900"
],
"sabiork":[
"1473"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19028"
]
}
},
{
"id":"fcl__L_c",
"name":"L-fuculose",
"compartment":"c",
"charge":0,
"formula":"C6H12O5",
"notes":{
"original_bigg_ids":[
"fcl_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"fcl__L"
],
"biocyc":[
"META:L-FUCULOSE"
],
"chebi":[
"CHEBI:21295",
"CHEBI:17617",
"CHEBI:58208",
"CHEBI:13103",
"CHEBI:6219"
],
"hmdb":[
"HMDB60267"
],
"inchi_key":[
"QZNPNKJXABGCRC-LFRDXLMFSA-N"
],
"kegg.compound":[
"C01721"
],
"metanetx.chemical":[
"MNXM1748"
],
"sabiork":[
"1604"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01186"
]
}
},
{
"id":"g3pg_p",
"name":"Glycerophosphoglycerol",
"compartment":"p",
"charge":-1,
"formula":"C6H14O8P",
"notes":{
"original_bigg_ids":[
"g3pg_p"
]
},
"annotation":{
"bigg.metabolite":[
"g3pg"
],
"biocyc":[
"META:GLYCEROPHOSPHOGLYCEROL"
],
"chebi":[
"CHEBI:61933",
"CHEBI:5457"
],
"inchi_key":[
"LLCSXHMJULHSJN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C03274"
],
"metanetx.chemical":[
"MNXM598"
],
"sabiork":[
"6520"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02090"
],
"slm":[
"000001190"
]
}
},
{
"id":"rib__D_e",
"name":"D-Ribose",
"compartment":"e",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"rib_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"rib__D"
],
"biocyc":[
"META:D-Ribofuranose",
"META:D-Ribopyranose"
],
"chebi":[
"CHEBI:13011",
"CHEBI:16988",
"CHEBI:46999",
"CHEBI:47013",
"CHEBI:47006",
"CHEBI:4233",
"CHEBI:21078"
],
"hmdb":[
"HMDB00283"
],
"inchi_key":[
"HMFHBZSHGGEWLO-SOOFDHNKSA-N"
],
"kegg.compound":[
"C21057",
"C00121"
],
"metanetx.chemical":[
"MNXM242"
],
"sabiork":[
"1653"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00105"
]
}
},
{
"id":"g3pg_c",
"name":"Glycerophosphoglycerol",
"compartment":"c",
"charge":-1,
"formula":"C6H14O8P",
"notes":{
"original_bigg_ids":[
"g3pg_c"
]
},
"annotation":{
"bigg.metabolite":[
"g3pg"
],
"biocyc":[
"META:GLYCEROPHOSPHOGLYCEROL"
],
"chebi":[
"CHEBI:61933",
"CHEBI:5457"
],
"inchi_key":[
"LLCSXHMJULHSJN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C03274"
],
"metanetx.chemical":[
"MNXM598"
],
"sabiork":[
"6520"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02090"
],
"slm":[
"000001190"
]
}
},
{
"id":"fuc__L_c",
"name":"L-Fucose",
"compartment":"c",
"charge":0,
"formula":"C6H12O5",
"notes":{
"original_bigg_ids":[
"fuc_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"fuc__L"
],
"biocyc":[
"META:CPD-15619",
"META:L-fucoses"
],
"chebi":[
"CHEBI:48204"
],
"hmdb":[
"HMDB62489"
],
"inchi_key":[
"PNNNRSAQSRJVSB-KCDKBNATSA-N"
],
"metanetx.chemical":[
"MNXM40586"
],
"reactome.compound":[
"6784249"
],
"sbo":"SBO:0000247"
}
},
{
"id":"rmn_e",
"name":"L-Rhamnose",
"compartment":"e",
"charge":0,
"formula":"C6H12O5",
"notes":{
"original_bigg_ids":[
"rmn_e"
]
},
"annotation":{
"bigg.metabolite":[
"rmn"
],
"biocyc":[
"META:CPD-15405",
"META:L-rhamnopyranose",
"META:L-rhamnose"
],
"chebi":[
"CHEBI:45427",
"CHEBI:62346",
"CHEBI:6292",
"CHEBI:57622",
"CHEBI:21378",
"CHEBI:26546",
"CHEBI:16055",
"CHEBI:62345",
"CHEBI:13160"
],
"hmdb":[
"HMDB00849"
],
"inchi_key":[
"PNNNRSAQSRJVSB-BXKVDMCESA-N"
],
"kegg.compound":[
"C00507"
],
"metanetx.chemical":[
"MNXM2967"
],
"sabiork":[
"1595"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00396",
"cpd27379"
]
}
},
{
"id":"fc1p_c",
"name":"L-Fuculose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O8P",
"notes":{
"original_bigg_ids":[
"fc1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"fc1p"
],
"biocyc":[
"META:FUCULOSE-1P"
],
"chebi":[
"CHEBI:16647",
"CHEBI:21296",
"CHEBI:57846",
"CHEBI:13105",
"CHEBI:6220",
"CHEBI:13104"
],
"inchi_key":[
"KNYGWWDTPGSEPD-LFRDXLMFSA-L"
],
"kegg.compound":[
"C01099"
],
"metanetx.chemical":[
"MNXM1749"
],
"sabiork":[
"1603"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00806"
]
}
},
{
"id":"g3pi_c",
"name":"Sn-Glycero-3-phospho-1-inositol",
"compartment":"c",
"charge":-1,
"formula":"C9H18O11P",
"notes":{
"original_bigg_ids":[
"g3pi_c"
]
},
"annotation":{
"bigg.metabolite":[
"g3pi"
],
"biocyc":[
"META:CPD-541"
],
"chebi":[
"CHEBI:26695",
"CHEBI:64715",
"CHEBI:58444",
"CHEBI:18321",
"CHEBI:10645",
"CHEBI:11200"
],
"hmdb":[
"HMDB11649"
],
"inchi_key":[
"BMVUIWJCUQSHLZ-UJGXJMNGSA-M"
],
"kegg.compound":[
"C01225"
],
"metanetx.chemical":[
"MNXM1517"
],
"reactome.compound":[
"6813734"
],
"sabiork":[
"5457"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00902"
]
}
},
{
"id":"sbt__D_e",
"name":"D-Sorbitol",
"compartment":"e",
"charge":0,
"formula":"C6H14O6",
"notes":{
"original_bigg_ids":[
"sbt_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"sbt__D"
],
"biocyc":[
"META:SORBITOL"
],
"chebi":[
"CHEBI:33796",
"CHEBI:21091",
"CHEBI:9201",
"CHEBI:17220",
"CHEBI:17924",
"CHEBI:26724",
"CHEBI:15093",
"CHEBI:26726",
"CHEBI:30911",
"CHEBI:12954",
"CHEBI:45559",
"CHEBI:4246",
"CHEBI:33795",
"CHEBI:13020"
],
"hmdb":[
"HMDB00247"
],
"inchi_key":[
"FBPFZTCFMRRESA-JGWLITMVSA-N"
],
"kegg.compound":[
"C00794"
],
"kegg.drug":[
"D00096"
],
"metanetx.chemical":[
"MNXM469"
],
"reactome.compound":[
"5652213"
],
"sabiork":[
"2148",
"2156"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00588"
]
}
},
{
"id":"g3pi_p",
"name":"Sn-Glycero-3-phospho-1-inositol",
"compartment":"p",
"charge":-1,
"formula":"C9H18O11P",
"notes":{
"original_bigg_ids":[
"g3pi_p"
]
},
"annotation":{
"bigg.metabolite":[
"g3pi"
],
"biocyc":[
"META:CPD-541"
],
"chebi":[
"CHEBI:26695",
"CHEBI:64715",
"CHEBI:58444",
"CHEBI:18321",
"CHEBI:10645",
"CHEBI:11200"
],
"hmdb":[
"HMDB11649"
],
"inchi_key":[
"BMVUIWJCUQSHLZ-UJGXJMNGSA-M"
],
"kegg.compound":[
"C01225"
],
"metanetx.chemical":[
"MNXM1517"
],
"reactome.compound":[
"6813734"
],
"sabiork":[
"5457"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00902"
]
}
},
{
"id":"lald__L_c",
"name":"L-Lactaldehyde",
"compartment":"c",
"charge":0,
"formula":"C3H6O2",
"notes":{
"original_bigg_ids":[
"lald_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"lald__L"
],
"biocyc":[
"META:LACTALD"
],
"chebi":[
"CHEBI:11064",
"CHEBI:18419",
"CHEBI:18782",
"CHEBI:11015",
"CHEBI:18041",
"CHEBI:24994",
"CHEBI:13130",
"CHEBI:6349",
"CHEBI:421"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/88223554-b53a-4d83-a808-317577a10049",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/b5211d99-30aa-45b8-9d28-1e78a67223f5"
],
"hmdb":[
"HMDB03052"
],
"inchi_key":[
"BSABBBMNWQWLLU-VKHMYHEASA-N"
],
"kegg.compound":[
"C05999",
"C00424"
],
"metanetx.chemical":[
"MNXM2387"
],
"sabiork":[
"2045",
"2845"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03571",
"cpd00334",
"cpd27393"
]
}
},
{
"id":"ser__L_e",
"name":"L-Serine",
"compartment":"e",
"charge":0,
"formula":"C3H7NO3",
"notes":{
"original_bigg_ids":[
"ser_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"ser__L"
],
"biocyc":[
"META:SER",
"META:Serines"
],
"chebi":[
"CHEBI:32845",
"CHEBI:17822",
"CHEBI:26648",
"CHEBI:45440",
"CHEBI:21387",
"CHEBI:32837",
"CHEBI:13167",
"CHEBI:45451",
"CHEBI:32836",
"CHEBI:15081",
"CHEBI:45590",
"CHEBI:35243",
"CHEBI:32846",
"CHEBI:17115",
"CHEBI:45597",
"CHEBI:33384",
"CHEBI:45677",
"CHEBI:6301",
"CHEBI:9116"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/207ebcd7-f859-4b01-8a69-9b99fb380595"
],
"hmdb":[
"HMDB00589",
"HMDB00187",
"HMDB62263"
],
"inchi_key":[
"MTCFGRXMJLQNBG-REOHCLBHSA-N"
],
"kegg.compound":[
"C00716",
"C00065"
],
"kegg.drug":[
"D00016"
],
"lipidmaps":[
"LMFA01100045"
],
"metanetx.chemical":[
"MNXM53"
],
"reactome.compound":[
"352002",
"379732",
"8932979",
"200736"
],
"sabiork":[
"2140",
"75"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28171",
"cpd00054",
"cpd30743"
]
}
},
{
"id":"ppp9_c",
"name":"Protoporphyrin",
"compartment":"c",
"charge":-2,
"formula":"C34H32N4O4",
"notes":{
"original_bigg_ids":[
"ppp9_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppp9"
],
"biocyc":[
"META:PROTOPORPHYRIN_IX"
],
"chebi":[
"CHEBI:15430",
"CHEBI:14961",
"CHEBI:26358",
"CHEBI:8592",
"CHEBI:14960",
"CHEBI:14959",
"CHEBI:36159",
"CHEBI:57306"
],
"hmdb":[
"HMDB00241"
],
"inchi_key":[
"KSFOVUSSGSKXFI-UJJXFSCMSA-L"
],
"kegg.compound":[
"C02191"
],
"metanetx.chemical":[
"MNXM346"
],
"reactome.compound":[
"189487",
"189463"
],
"sabiork":[
"6061"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01476"
]
}
},
{
"id":"g3ps_p",
"name":"Glycerophosphoserine",
"compartment":"p",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"g3ps_p"
]
},
"annotation":{
"bigg.metabolite":[
"g3ps"
],
"biocyc":[
"META:CPD0-2030"
],
"chebi":[
"CHEBI:64765",
"CHEBI:64945",
"CHEBI:61931",
"CHEBI:62013"
],
"inchi_key":[
"ZWZWYGMENQVNFU-UHNVWZDZSA-M"
],
"metanetx.chemical":[
"MNXM97117"
],
"sabiork":[
"27671"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15468"
],
"slm":[
"000001192"
]
}
},
{
"id":"g3ps_c",
"name":"Glycerophosphoserine",
"compartment":"c",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"g3ps_c"
]
},
"annotation":{
"bigg.metabolite":[
"g3ps"
],
"biocyc":[
"META:CPD0-2030"
],
"chebi":[
"CHEBI:64765",
"CHEBI:64945",
"CHEBI:61931",
"CHEBI:62013"
],
"inchi_key":[
"ZWZWYGMENQVNFU-UHNVWZDZSA-M"
],
"metanetx.chemical":[
"MNXM97117"
],
"sabiork":[
"27671"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15468"
],
"slm":[
"000001192"
]
}
},
{
"id":"skm_e",
"name":"Shikimate",
"compartment":"e",
"charge":-1,
"formula":"C7H9O5",
"notes":{
"original_bigg_ids":[
"skm_e"
]
},
"annotation":{
"bigg.metabolite":[
"skm"
],
"biocyc":[
"META:SHIKIMATE"
],
"chebi":[
"CHEBI:15083",
"CHEBI:26664",
"CHEBI:9133",
"CHEBI:45740",
"CHEBI:26662",
"CHEBI:16119",
"CHEBI:26663",
"CHEBI:36208"
],
"hmdb":[
"HMDB03070"
],
"inchi_key":[
"JXOHGGNKMLTUBP-HSUXUTPPSA-M"
],
"kegg.compound":[
"C00493"
],
"metanetx.chemical":[
"MNXM602"
],
"reactome.compound":[
"964932"
],
"sabiork":[
"5117"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00383"
]
}
},
{
"id":"glyc_c",
"name":"Glycerol",
"compartment":"c",
"charge":0,
"formula":"C3H8O3",
"notes":{
"original_bigg_ids":[
"glyc_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyc"
],
"biocyc":[
"META:GLYCEROL"
],
"chebi":[
"CHEBI:5448",
"CHEBI:14334",
"CHEBI:42998",
"CHEBI:17754",
"CHEBI:24351",
"CHEBI:131422"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/48edd8a9-6a4a-4900-b0cf-97b1ccaa1125",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/2e8c8093-3269-46b3-be2e-f1df9fdde25c"
],
"hmdb":[
"HMDB00131"
],
"inchi_key":[
"PEDCQBHIVMGVHV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00116"
],
"kegg.drug":[
"D00028"
],
"metanetx.chemical":[
"MNXM89612"
],
"reactome.compound":[
"192438",
"76116"
],
"sabiork":[
"1303"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00100"
]
}
},
{
"id":"for_p",
"name":"Formate",
"compartment":"p",
"charge":-1,
"formula":"CH1O2",
"notes":{
"original_bigg_ids":[
"for_p"
]
},
"annotation":{
"bigg.metabolite":[
"for"
],
"biocyc":[
"META:CPD1G-1532",
"META:CPD1G-1535",
"META:FORMATE",
"META:CPD-9845",
"META:CPD1G-1534",
"META:CARBOXYL-GROUP",
"META:CPD1G-1533"
],
"chebi":[
"CHEBI:24081",
"CHEBI:30751",
"CHEBI:15740",
"CHEBI:5145",
"CHEBI:42460",
"CHEBI:14276",
"CHEBI:24082"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a9d20ae-b6ec-40a9-93ca-1de20597b1ed",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/09c1ad08-016e-4477-8840-b97a031eae23",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/bf16ab32-cb3c-4427-a65a-089ab754823e",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/34fe3cd9-9b0b-46b0-a1c5-8a66509f1919",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1d077cf2-3f9f-4163-aa49-0fca1b2b3ab3"
],
"hmdb":[
"HMDB00142"
],
"inchi_key":[
"BDAGIHXWWSANSR-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00058"
],
"metanetx.chemical":[
"MNXM39"
],
"reactome.compound":[
"29460",
"194712",
"389585",
"6801451"
],
"sabiork":[
"1285"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00047",
"cpd22511"
]
}
},
{
"id":"fe2_p",
"name":"Fe2+ mitochondria",
"compartment":"p",
"charge":2,
"formula":"Fe",
"notes":{
"original_bigg_ids":[
"fe2_p"
]
},
"annotation":{
"bigg.metabolite":[
"fe2"
],
"biocyc":[
"META:FE+2"
],
"chebi":[
"CHEBI:29033",
"CHEBI:49599",
"CHEBI:13321",
"CHEBI:21129",
"CHEBI:13319",
"CHEBI:24876",
"CHEBI:34754"
],
"hmdb":[
"HMDB00692"
],
"inchi_key":[
"CWYNVVGOOAEACU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C14818"
],
"metanetx.chemical":[
"MNXM111"
],
"sabiork":[
"1275"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd10515"
]
}
},
{
"id":"so2_e",
"name":"Sulfur dioxide",
"compartment":"e",
"charge":0,
"formula":"O2S",
"notes":{
"original_bigg_ids":[
"so2_e"
]
},
"annotation":{
"bigg.metabolite":[
"so2"
],
"biocyc":[
"META:SULFUR-DIOXIDE"
],
"chebi":[
"CHEBI:45789",
"CHEBI:18422",
"CHEBI:9351",
"CHEBI:8992"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/739d918d-f0e0-4b19-900c-7abb204b45c0"
],
"hmdb":[
"HMDB34834"
],
"inchi_key":[
"RAHZWNYVWXNFOC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C09306"
],
"kegg.drug":[
"D05961"
],
"metanetx.chemical":[
"MNXM4835"
],
"sabiork":[
"2804"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd06201"
]
}
},
{
"id":"1pyr5c_c",
"name":"1-Pyrroline-5-carboxylate",
"compartment":"c",
"charge":-1,
"formula":"C5H6NO2",
"notes":{
"original_bigg_ids":[
"1pyr5c_c"
]
},
"annotation":{
"bigg.metabolite":[
"1pyr5c"
],
"biocyc":[
"META:L-DELTA1-PYRROLINE_5-CARBOXYLATE"
],
"chebi":[
"CHEBI:11297",
"CHEBI:26458",
"CHEBI:18727",
"CHEBI:371",
"CHEBI:15893",
"CHEBI:29066",
"CHEBI:11689",
"CHEBI:1372",
"CHEBI:17388",
"CHEBI:12409",
"CHEBI:19873",
"CHEBI:19095"
],
"hmdb":[
"HMDB01301",
"HMDB02240"
],
"inchi_key":[
"DWAKNKKXGALPNW-UHFFFAOYSA-M"
],
"kegg.compound":[
"C03912",
"C04322"
],
"metanetx.chemical":[
"MNXM1617"
],
"reactome.compound":[
"113590",
"35305"
],
"sabiork":[
"6942",
"7234"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29655",
"cpd02651",
"cpd02431"
]
}
},
{
"id":"so3_e",
"name":"Sulfite",
"compartment":"e",
"charge":-2,
"formula":"O3S",
"notes":{
"original_bigg_ids":[
"so3_e"
]
},
"annotation":{
"bigg.metabolite":[
"so3"
],
"biocyc":[
"META:H2SO3",
"META:HSO3",
"META:SO3"
],
"chebi":[
"CHEBI:15139",
"CHEBI:17137",
"CHEBI:45548",
"CHEBI:48854",
"CHEBI:26837",
"CHEBI:9344",
"CHEBI:5598",
"CHEBI:29214",
"CHEBI:13367",
"CHEBI:17359",
"CHEBI:33543"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/0382072e-fc0c-41a7-be8d-fce140ecf836",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2bf998e0-031f-4353-bbd0-d9c0af36460e"
],
"hmdb":[
"HMDB34829",
"HMDB03008",
"HMDB01033",
"HMDB00240"
],
"inchi_key":[
"LSNNMFCWUKXFEE-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00094",
"C11481"
],
"metanetx.chemical":[
"MNXM105630"
],
"sabiork":[
"3059"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00081"
]
}
},
{
"id":"glu5sa_c",
"name":"L-Glutamate 5-semialdehyde",
"compartment":"c",
"charge":0,
"formula":"C5H9NO3",
"notes":{
"original_bigg_ids":[
"glu5sa_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu5sa"
],
"biocyc":[
"META:L-GLUTAMATE_GAMMA-SEMIALDEHYDE"
],
"chebi":[
"CHEBI:21302",
"CHEBI:58066",
"CHEBI:17232",
"CHEBI:13109",
"CHEBI:6225"
],
"hmdb":[
"HMDB02104"
],
"inchi_key":[
"KABXUUFDPUOJMW-BYPYZUCNSA-N"
],
"kegg.compound":[
"C01165"
],
"metanetx.chemical":[
"MNXM245"
],
"reactome.compound":[
"31339"
],
"sabiork":[
"2262"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00858"
]
}
},
{
"id":"so4_e",
"name":"Sulfate",
"compartment":"e",
"charge":-2,
"formula":"O4S",
"notes":{
"original_bigg_ids":[
"so4_e"
]
},
"annotation":{
"bigg.metabolite":[
"so4"
],
"biocyc":[
"META:SULFATE",
"META:HSO4"
],
"chebi":[
"CHEBI:15135",
"CHEBI:45693",
"CHEBI:29199",
"CHEBI:9335",
"CHEBI:16189",
"CHEBI:45687",
"CHEBI:26836",
"CHEBI:45696"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/cf4fcd19-f2cb-4d92-aa67-323762e3b269"
],
"hmdb":[
"HMDB01448"
],
"inchi_key":[
"QAOWNCQODCNURD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00059"
],
"kegg.drug":[
"D05963"
],
"metanetx.chemical":[
"MNXM58"
],
"reactome.compound":[
"174375",
"1606845",
"1609649",
"1614584",
"427648"
],
"sabiork":[
"1759"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29301",
"cpd00048"
]
}
},
{
"id":"glu5p_c",
"name":"L-Glutamate 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H8NO7P",
"notes":{
"original_bigg_ids":[
"glu5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu5p"
],
"biocyc":[
"META:L-GLUTAMATE-5-P"
],
"chebi":[
"CHEBI:6230",
"CHEBI:58274",
"CHEBI:17798",
"CHEBI:13113",
"CHEBI:13108",
"CHEBI:21312"
],
"hmdb":[
"HMDB01228"
],
"inchi_key":[
"PJRXVIJAERNUIP-VKHMYHEASA-L"
],
"kegg.compound":[
"C03287"
],
"metanetx.chemical":[
"MNXM1280"
],
"sabiork":[
"1742"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02097"
]
}
},
{
"id":"glcr_c",
"name":"D-Glucarate",
"compartment":"c",
"charge":-2,
"formula":"C6H8O8",
"notes":{
"original_bigg_ids":[
"glcr_c"
]
},
"annotation":{
"bigg.metabolite":[
"glcr"
],
"biocyc":[
"META:D-GLUCARATE"
],
"chebi":[
"CHEBI:42731",
"CHEBI:20982",
"CHEBI:16002",
"CHEBI:12953",
"CHEBI:4155",
"CHEBI:33801",
"CHEBI:20980",
"CHEBI:30612"
],
"hmdb":[
"HMDB29881",
"HMDB00663"
],
"inchi_key":[
"DSLZVSRJTYRBFB-LLEIAEIESA-L"
],
"kegg.compound":[
"C00818"
],
"lipidmaps":[
"LMFA01170108"
],
"metanetx.chemical":[
"MNXM744"
],
"sabiork":[
"5252",
"5542"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00571",
"cpd00984",
"cpd01246",
"cpd00609"
]
}
},
{
"id":"pydam_c",
"name":"Pyridoxamine",
"compartment":"c",
"charge":1,
"formula":"C8H13N2O2",
"notes":{
"original_bigg_ids":[
"pydam_c"
]
},
"annotation":{
"bigg.metabolite":[
"pydam"
],
"biocyc":[
"META:PYRIDOXAMINE"
],
"chebi":[
"CHEBI:57761",
"CHEBI:45228",
"CHEBI:16410",
"CHEBI:26426",
"CHEBI:8669",
"CHEBI:14978",
"CHEBI:131533"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a8e03eef-0f65-4f7e-aaaa-c85331fbebe6"
],
"hmdb":[
"HMDB62696",
"HMDB01431"
],
"inchi_key":[
"NHZMQXZHNVQTQA-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00534"
],
"metanetx.chemical":[
"MNXM548"
],
"reactome.compound":[
"964945"
],
"sabiork":[
"2080"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00419"
]
}
},
{
"id":"glcr_p",
"name":"D-Glucarate",
"compartment":"p",
"charge":-2,
"formula":"C6H8O8",
"notes":{
"original_bigg_ids":[
"glcr_p"
]
},
"annotation":{
"bigg.metabolite":[
"glcr"
],
"biocyc":[
"META:D-GLUCARATE"
],
"chebi":[
"CHEBI:42731",
"CHEBI:20982",
"CHEBI:16002",
"CHEBI:12953",
"CHEBI:4155",
"CHEBI:33801",
"CHEBI:20980",
"CHEBI:30612"
],
"hmdb":[
"HMDB29881",
"HMDB00663"
],
"inchi_key":[
"DSLZVSRJTYRBFB-LLEIAEIESA-L"
],
"kegg.compound":[
"C00818"
],
"lipidmaps":[
"LMFA01170108"
],
"metanetx.chemical":[
"MNXM744"
],
"sabiork":[
"5252",
"5542"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00571",
"cpd00984",
"cpd01246",
"cpd00609"
]
}
},
{
"id":"6pgl_c",
"name":"6-phospho-D-glucono-1,5-lactone",
"compartment":"c",
"charge":-2,
"formula":"C6H9O9P",
"notes":{
"original_bigg_ids":[
"6pgl_c"
]
},
"annotation":{
"bigg.metabolite":[
"6pgl"
],
"biocyc":[
"META:D-6-P-GLUCONO-DELTA-LACTONE"
],
"chebi":[
"CHEBI:12233",
"CHEBI:4160",
"CHEBI:57955",
"CHEBI:16938",
"CHEBI:20989",
"CHEBI:12958"
],
"hmdb":[
"HMDB62628",
"HMDB01127"
],
"inchi_key":[
"IJOJIVNDFQSGAB-SQOUGZDYSA-L"
],
"kegg.compound":[
"C01236"
],
"metanetx.chemical":[
"MNXM429"
],
"reactome.compound":[
"31467"
],
"sabiork":[
"1366"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00911"
]
}
},
{
"id":"g6p_p",
"name":"D-Glucose 6-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"g6p_p"
]
},
"annotation":{
"bigg.metabolite":[
"g6p"
],
"biocyc":[
"META:D-glucopyranose-6-phosphate"
],
"chebi":[
"CHEBI:61548",
"CHEBI:14314",
"CHEBI:4170"
],
"hmdb":[
"HMDB01549",
"HMDB01401",
"HMDB06793"
],
"inchi_key":[
"NBSCHQHZLSJFNQ-GASJEMHNSA-L"
],
"kegg.compound":[
"C00092"
],
"metanetx.chemical":[
"MNXM160"
],
"reactome.compound":[
"1629756"
],
"sabiork":[
"1404",
"1405"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00079",
"cpd26836"
]
}
},
{
"id":"gal_p",
"name":"D-Galactose",
"compartment":"p",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"gal_p"
]
},
"annotation":{
"bigg.metabolite":[
"gal"
],
"biocyc":[
"META:ALPHA-D-GALACTOSE",
"META:D-galactopyranose"
],
"chebi":[
"CHEBI:12936",
"CHEBI:10231",
"CHEBI:4139",
"CHEBI:28061",
"CHEBI:22373",
"CHEBI:42741"
],
"hmdb":[
"HMDB05762",
"HMDB00143"
],
"inchi_key":[
"WQZGKKKJIJFFOK-PHYPRBDBSA-N"
],
"kegg.compound":[
"C00984",
"C00124"
],
"kegg.drug":[
"D04291"
],
"metanetx.chemical":[
"MNXM390"
],
"sabiork":[
"1661",
"90",
"1662"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00724",
"cpd00108"
]
}
},
{
"id":"hxan_p",
"name":"Hypoxanthine",
"compartment":"p",
"charge":0,
"formula":"C5H4N4O",
"notes":{
"original_bigg_ids":[
"hxan_p"
]
},
"annotation":{
"bigg.metabolite":[
"hxan"
],
"biocyc":[
"META:HYPOXANTHINE"
],
"chebi":[
"CHEBI:14431",
"CHEBI:43237",
"CHEBI:5841",
"CHEBI:17368",
"CHEBI:24762"
],
"hmdb":[
"HMDB00157"
],
"inchi_key":[
"FDGQSTZJBFJUBT-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00262"
],
"metanetx.chemical":[
"MNXM213"
],
"reactome.compound":[
"113599"
],
"sabiork":[
"5528",
"1321"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00226"
]
}
},
{
"id":"gal1p_p",
"name":"Alpha-D-Galactose 1-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"gal1p_p"
]
},
"annotation":{
"bigg.metabolite":[
"gal1p"
],
"biocyc":[
"META:GALACTOSE-1P"
],
"chebi":[
"CHEBI:42878",
"CHEBI:37480",
"CHEBI:12306",
"CHEBI:4140",
"CHEBI:58336",
"CHEBI:22374",
"CHEBI:12305",
"CHEBI:10232",
"CHEBI:20957",
"CHEBI:17973",
"CHEBI:59011"
],
"hmdb":[
"HMDB00645",
"HMDB62705",
"HMDB03359"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-FPRJBGLDSA-L"
],
"kegg.compound":[
"C00446",
"C03384"
],
"metanetx.chemical":[
"MNXM336"
],
"reactome.compound":[
"30170"
],
"sabiork":[
"1381",
"24789",
"1495"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19025",
"cpd00348"
]
}
},
{
"id":"adpglc_c",
"name":"ADPglucose C16H23N5O15P2",
"compartment":"c",
"charge":-2,
"formula":"C16H23N5O15P2",
"notes":{
"original_bigg_ids":[
"adpglc_c"
]
},
"annotation":{
"bigg.metabolite":[
"adpglc"
],
"biocyc":[
"META:ADP-D-GLUCOSE"
],
"chebi":[
"CHEBI:40615",
"CHEBI:20846",
"CHEBI:57498",
"CHEBI:13230",
"CHEBI:15751",
"CHEBI:2349"
],
"hmdb":[
"HMDB62621",
"HMDB06557",
"HMDB12186"
],
"inchi_key":[
"WFPZSXYXPSUOPY-ROYWQJLOSA-L"
],
"kegg.compound":[
"C00498"
],
"kegg.glycan":[
"G11109"
],
"metanetx.chemical":[
"MNXM561"
],
"sabiork":[
"3922"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00387"
]
}
},
{
"id":"ichor_c",
"name":"Isochorismate",
"compartment":"c",
"charge":-2,
"formula":"C10H8O6",
"notes":{
"original_bigg_ids":[
"ichor_c"
]
},
"annotation":{
"bigg.metabolite":[
"ichor"
],
"biocyc":[
"META:ISOCHORISMATE"
],
"chebi":[
"CHEBI:24883",
"CHEBI:17582",
"CHEBI:14464",
"CHEBI:5997",
"CHEBI:29780"
],
"inchi_key":[
"NTGWPRCCOQCMGE-YUMQZZPRSA-L"
],
"kegg.compound":[
"C00885"
],
"metanetx.chemical":[
"MNXM799"
],
"sabiork":[
"5298"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00658"
]
}
},
{
"id":"icolipa_c",
"name":"Inner core oligosaccharide lipid A (E coli)",
"compartment":"c",
"charge":-11,
"formula":"C145H251N2O74P4",
"notes":{
"original_bigg_ids":[
"icolipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"icolipa"
],
"biocyc":[
"META:CPD0-2295"
],
"inchi_key":[
"YKVGZDADLKRSPK-YRCDCJNSSA-C"
],
"metanetx.chemical":[
"MNXM57404"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26459"
]
}
},
{
"id":"gal_bD_p",
"name":"Beta D-Galactose",
"compartment":"p",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"gal_bD_p"
]
},
"annotation":{
"bigg.metabolite":[
"gal_bD"
],
"biocyc":[
"META:GALACTOSE"
],
"chebi":[
"CHEBI:42776",
"CHEBI:27667",
"CHEBI:10383",
"CHEBI:22774",
"CHEBI:42889"
],
"hmdb":[
"HMDB03449"
],
"inchi_key":[
"WQZGKKKJIJFFOK-FPRJBGLDSA-N"
],
"kegg.compound":[
"C00962"
],
"metanetx.chemical":[
"MNXM112"
],
"sabiork":[
"1377"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00709"
]
}
},
{
"id":"idon__L_p",
"name":"L-Idonate",
"compartment":"p",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"idon_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"idon__L"
],
"biocyc":[
"META:L-IDONATE"
],
"chebi":[
"CHEBI:13126",
"CHEBI:17796",
"CHEBI:21336",
"CHEBI:57659",
"CHEBI:6250",
"CHEBI:21335",
"CHEBI:58494"
],
"inchi_key":[
"RGHNJXZEOKUKBD-SKNVOMKLSA-M"
],
"kegg.compound":[
"C00770"
],
"metanetx.chemical":[
"MNXM1565"
],
"sabiork":[
"5225"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00573"
]
}
},
{
"id":"galctn__L_p",
"name":"L-Galactonate",
"compartment":"p",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"galctn_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"galctn__L"
],
"biocyc":[
"META:CPD0-1083"
],
"chebi":[
"CHEBI:37425",
"CHEBI:53071"
],
"inchi_key":[
"RGHNJXZEOKUKBD-RSJOWCBRSA-M"
],
"kegg.compound":[
"C15930"
],
"metanetx.chemical":[
"MNXM636"
],
"sabiork":[
"24860"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14659"
]
}
},
{
"id":"ggagicolipa_c",
"name":"Glucosyl-galactosyl-glucosyl-inner core oligosaccharide lipid A",
"compartment":"c",
"charge":-11,
"formula":"C163H281N2O89P4",
"notes":{
"original_bigg_ids":[
"ggagicolipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"ggagicolipa"
],
"biocyc":[
"META:CPD0-2261"
],
"inchi_key":[
"WLEFLXRCTUWFSD-CCRRCLIHSA-C"
],
"metanetx.chemical":[
"MNXM55192"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15475"
]
}
},
{
"id":"gggagicolipa_c",
"name":"Glucosyl-glucosyl-galactosyl-glucosyl-inner core oligosaccharide lipid A",
"compartment":"c",
"charge":-11,
"formula":"C169H291N2O94P4",
"notes":{
"original_bigg_ids":[
"gggagicolipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"gggagicolipa"
],
"biocyc":[
"META:CPD0-2259"
],
"inchi_key":[
"DJHBKVISRABJNG-HEIPHTFDSA-C"
],
"metanetx.chemical":[
"MNXM55193"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15477"
]
}
},
{
"id":"eig3p_c",
"name":"D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H9N2O6P",
"notes":{
"original_bigg_ids":[
"eig3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"eig3p"
],
"biocyc":[
"META:D-ERYTHRO-IMIDAZOLE-GLYCEROL-P"
],
"chebi":[
"CHEBI:12888",
"CHEBI:17805",
"CHEBI:4270",
"CHEBI:58278",
"CHEBI:20923"
],
"hmdb":[
"HMDB12208"
],
"inchi_key":[
"HFYBTHCYPKEDQQ-RITPCOANSA-L"
],
"kegg.compound":[
"C04666"
],
"metanetx.chemical":[
"MNXM1422"
],
"sabiork":[
"7476"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02843"
]
}
},
{
"id":"galctn__D_c",
"name":"D-Galactonate",
"compartment":"c",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"galctn_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"galctn__D"
],
"biocyc":[
"META:D-GALACTONATE"
],
"chebi":[
"CHEBI:12931",
"CHEBI:24149",
"CHEBI:16534",
"CHEBI:4132",
"CHEBI:24148"
],
"hmdb":[
"HMDB00565"
],
"inchi_key":[
"RGHNJXZEOKUKBD-MGCNEYSASA-M"
],
"kegg.compound":[
"C00880"
],
"metanetx.chemical":[
"MNXM1734"
],
"sabiork":[
"2177"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00653"
]
}
},
{
"id":"prlp_c",
"name":"5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide",
"compartment":"c",
"charge":-4,
"formula":"C15H21N5O15P2",
"notes":{
"original_bigg_ids":[
"prlp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prlp"
],
"biocyc":[
"META:PHOSPHORIBULOSYL-FORMIMINO-AICAR-P"
],
"chebi":[
"CHEBI:39698",
"CHEBI:21471",
"CHEBI:7090",
"CHEBI:58525",
"CHEBI:27735",
"CHEBI:12100"
],
"inchi_key":[
"BLKFNHOCHNCLII-GHVQHMAVSA-J"
],
"kegg.compound":[
"C04916"
],
"metanetx.chemical":[
"MNXM1408"
],
"sabiork":[
"7675"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02991"
]
}
},
{
"id":"galctn__D_p",
"name":"D-Galactonate",
"compartment":"p",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"galctn_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"galctn__D"
],
"biocyc":[
"META:D-GALACTONATE"
],
"chebi":[
"CHEBI:12931",
"CHEBI:24149",
"CHEBI:16534",
"CHEBI:4132",
"CHEBI:24148"
],
"hmdb":[
"HMDB00565"
],
"inchi_key":[
"RGHNJXZEOKUKBD-MGCNEYSASA-M"
],
"kegg.compound":[
"C00880"
],
"metanetx.chemical":[
"MNXM1734"
],
"sabiork":[
"2177"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00653"
]
}
},
{
"id":"glcur1p_p",
"name":"D-Glucuronate 1-phosphate",
"compartment":"p",
"charge":-3,
"formula":"C6H8O10P",
"notes":{
"original_bigg_ids":[
"glcur1p_p"
]
},
"annotation":{
"bigg.metabolite":[
"glcur1p"
],
"biocyc":[
"META:CPD-510"
],
"chebi":[
"CHEBI:4179",
"CHEBI:21014",
"CHEBI:16787",
"CHEBI:681",
"CHEBI:28547",
"CHEBI:19090",
"CHEBI:35145",
"CHEBI:11294",
"CHEBI:57897"
],
"hmdb":[
"HMDB03976",
"HMDB06329"
],
"inchi_key":[
"AIQDYKMWENWVQJ-QIUUJYRFSA-K"
],
"kegg.compound":[
"C05385"
],
"metanetx.chemical":[
"MNXM1165"
],
"sabiork":[
"1842"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03191",
"cpd00880"
]
}
},
{
"id":"glcur_p",
"name":"D-Glucuronate",
"compartment":"p",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"glcur_p"
]
},
"annotation":{
"bigg.metabolite":[
"glcur"
],
"biocyc":[
"META:D-Glucopyranuronate"
],
"chebi":[
"CHEBI:12975",
"CHEBI:24297",
"CHEBI:21013",
"CHEBI:47952",
"CHEBI:24298",
"CHEBI:4178",
"CHEBI:58720",
"CHEBI:15748"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-AQKNRBDQSA-M"
],
"kegg.compound":[
"C00191"
],
"metanetx.chemical":[
"MNXM241"
],
"sabiork":[
"26257"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00164"
]
}
},
{
"id":"galct__D_p",
"name":"D-Galactarate",
"compartment":"p",
"charge":-2,
"formula":"C6H8O8",
"notes":{
"original_bigg_ids":[
"galct_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"galct__D"
],
"biocyc":[
"META:D-GALACTARATE"
],
"chebi":[
"CHEBI:33799",
"CHEBI:16537",
"CHEBI:12929",
"CHEBI:24135",
"CHEBI:35390",
"CHEBI:14285",
"CHEBI:24136",
"CHEBI:17444",
"CHEBI:4130",
"CHEBI:48871",
"CHEBI:30852",
"CHEBI:20944",
"CHEBI:5250",
"CHEBI:24137"
],
"hmdb":[
"HMDB00639",
"HMDB03435"
],
"inchi_key":[
"DSLZVSRJTYRBFB-DUHBMQHGSA-L"
],
"kegg.compound":[
"C00879"
],
"lipidmaps":[
"LMFA01170107"
],
"metanetx.chemical":[
"MNXM1080"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00652"
]
}
},
{
"id":"galct__D_c",
"name":"D-Galactarate",
"compartment":"c",
"charge":-2,
"formula":"C6H8O8",
"notes":{
"original_bigg_ids":[
"galct_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"galct__D"
],
"biocyc":[
"META:D-GALACTARATE"
],
"chebi":[
"CHEBI:33799",
"CHEBI:16537",
"CHEBI:12929",
"CHEBI:24135",
"CHEBI:35390",
"CHEBI:14285",
"CHEBI:24136",
"CHEBI:17444",
"CHEBI:4130",
"CHEBI:48871",
"CHEBI:30852",
"CHEBI:20944",
"CHEBI:5250",
"CHEBI:24137"
],
"hmdb":[
"HMDB00639",
"HMDB03435"
],
"inchi_key":[
"DSLZVSRJTYRBFB-DUHBMQHGSA-L"
],
"kegg.compound":[
"C00879"
],
"lipidmaps":[
"LMFA01170107"
],
"metanetx.chemical":[
"MNXM1080"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00652"
]
}
},
{
"id":"glcur_c",
"name":"D-Glucuronate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"glcur_c"
]
},
"annotation":{
"bigg.metabolite":[
"glcur"
],
"biocyc":[
"META:D-Glucopyranuronate"
],
"chebi":[
"CHEBI:12975",
"CHEBI:24297",
"CHEBI:21013",
"CHEBI:47952",
"CHEBI:24298",
"CHEBI:4178",
"CHEBI:58720",
"CHEBI:15748"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-AQKNRBDQSA-M"
],
"kegg.compound":[
"C00191"
],
"metanetx.chemical":[
"MNXM241"
],
"sabiork":[
"26257"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00164"
]
}
},
{
"id":"3ig3p_c",
"name":"C'-(3-Indolyl)-glycerol 3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C11H12NO6P",
"notes":{
"original_bigg_ids":[
"3ig3p_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ig3p"
],
"biocyc":[
"META:INDOLE-3-GLYCEROL-P"
],
"chebi":[
"CHEBI:58866",
"CHEBI:51793"
],
"inchi_key":[
"NQEQTYPJSIEPHW-MNOVXSKESA-L"
],
"kegg.compound":[
"C03506"
],
"metanetx.chemical":[
"MNXM866"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02210",
"cpd29667"
]
}
},
{
"id":"glntrna_c",
"name":"L-Glutaminyl-tRNA(Gln)",
"compartment":"c",
"charge":1,
"formula":"C5H9N2O2R",
"notes":{
"original_bigg_ids":[
"glntrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"glntrna"
],
"chebi":[
"CHEBI:13112",
"CHEBI:5433",
"CHEBI:13344",
"CHEBI:29166"
],
"kegg.compound":[
"C02282"
],
"metanetx.chemical":[
"MNXM89810"
],
"reactome.compound":[
"379753",
"379772"
],
"sabiork":[
"3857"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12060"
]
}
},
{
"id":"trnagln_c",
"name":"TRNA(Gln)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnagln_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnagln"
],
"biocyc":[
"META:GLN-tRNAs"
],
"chebi":[
"CHEBI:29168",
"CHEBI:10679",
"CHEBI:15174"
],
"kegg.compound":[
"C01640"
],
"metanetx.chemical":[
"MNXM71"
],
"reactome.compound":[
"379740",
"379748"
],
"sabiork":[
"3836"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11911",
"cpd27100"
]
}
},
{
"id":"gal1p_c",
"name":"Alpha-D-Galactose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"gal1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gal1p"
],
"biocyc":[
"META:GALACTOSE-1P"
],
"chebi":[
"CHEBI:42878",
"CHEBI:37480",
"CHEBI:12306",
"CHEBI:4140",
"CHEBI:58336",
"CHEBI:22374",
"CHEBI:12305",
"CHEBI:10232",
"CHEBI:20957",
"CHEBI:17973",
"CHEBI:59011"
],
"hmdb":[
"HMDB00645",
"HMDB62705",
"HMDB03359"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-FPRJBGLDSA-L"
],
"kegg.compound":[
"C00446",
"C03384"
],
"metanetx.chemical":[
"MNXM336"
],
"reactome.compound":[
"30170"
],
"sabiork":[
"1381",
"24789",
"1495"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19025",
"cpd00348"
]
}
},
{
"id":"gal_c",
"name":"D-Galactose",
"compartment":"c",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"gal_c"
]
},
"annotation":{
"bigg.metabolite":[
"gal"
],
"biocyc":[
"META:ALPHA-D-GALACTOSE",
"META:D-galactopyranose"
],
"chebi":[
"CHEBI:12936",
"CHEBI:10231",
"CHEBI:4139",
"CHEBI:28061",
"CHEBI:22373",
"CHEBI:42741"
],
"hmdb":[
"HMDB05762",
"HMDB00143"
],
"inchi_key":[
"WQZGKKKJIJFFOK-PHYPRBDBSA-N"
],
"kegg.compound":[
"C00984",
"C00124"
],
"kegg.drug":[
"D04291"
],
"metanetx.chemical":[
"MNXM390"
],
"sabiork":[
"1661",
"90",
"1662"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00724",
"cpd00108"
]
}
},
{
"id":"2cpr5p_c",
"name":"1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C12H13NO9P",
"notes":{
"original_bigg_ids":[
"2cpr5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"2cpr5p"
],
"biocyc":[
"META:CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P"
],
"chebi":[
"CHEBI:11186",
"CHEBI:566",
"CHEBI:18959",
"CHEBI:565",
"CHEBI:29112",
"CHEBI:58613",
"CHEBI:28625"
],
"inchi_key":[
"QKMBYNRMPRKVTO-MNOVXSKESA-K"
],
"kegg.compound":[
"C01302"
],
"metanetx.chemical":[
"MNXM1455"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00956"
]
}
},
{
"id":"melib_c",
"name":"Melibiose C12H22O11",
"compartment":"c",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"melib_c"
]
},
"annotation":{
"bigg.metabolite":[
"melib"
],
"biocyc":[
"META:MELIBIOSE"
],
"chebi":[
"CHEBI:61827"
],
"inchi_key":[
"DLRVVLDZNNYCBX-ZZFZYMBESA-N"
],
"kegg.glycan":[
"G00835"
],
"metanetx.chemical":[
"MNXM8340"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gln__L_p",
"name":"L-Glutamine",
"compartment":"p",
"charge":0,
"formula":"C5H10N2O3",
"notes":{
"original_bigg_ids":[
"gln_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"gln__L"
],
"biocyc":[
"META:GLN"
],
"chebi":[
"CHEBI:42943",
"CHEBI:42899",
"CHEBI:32679",
"CHEBI:32678",
"CHEBI:58359",
"CHEBI:28300",
"CHEBI:42812",
"CHEBI:13110",
"CHEBI:18050",
"CHEBI:32666",
"CHEBI:6227",
"CHEBI:32665",
"CHEBI:21308",
"CHEBI:42814",
"CHEBI:5432",
"CHEBI:24316"
],
"hmdb":[
"HMDB00641"
],
"inchi_key":[
"ZDXPYRJPNDTMRX-VKHMYHEASA-N"
],
"kegg.compound":[
"C00064",
"C00303"
],
"kegg.drug":[
"D00015"
],
"metanetx.chemical":[
"MNXM37"
],
"reactome.compound":[
"113522",
"212615",
"29472"
],
"sabiork":[
"2011",
"74"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00253",
"cpd00053"
]
}
},
{
"id":"iletrna_c",
"name":"L-Isoleucyl-tRNA(Ile)",
"compartment":"c",
"charge":1,
"formula":"C6H12NOR",
"notes":{
"original_bigg_ids":[
"iletrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"iletrna"
],
"chebi":[
"CHEBI:13128",
"CHEBI:6256",
"CHEBI:29160"
],
"kegg.compound":[
"C03127"
],
"metanetx.chemical":[
"MNXM89832"
],
"reactome.compound":[
"379787",
"379769"
],
"sabiork":[
"3853"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12256"
]
}
},
{
"id":"glucys_c",
"name":"Gamma-L-Glutamyl-L-cysteine",
"compartment":"c",
"charge":-1,
"formula":"C8H13N2O5S",
"notes":{
"original_bigg_ids":[
"glucys_c"
]
},
"annotation":{
"bigg.metabolite":[
"glucys"
],
"biocyc":[
"META:L-GAMMA-GLUTAMYLCYSTEINE"
],
"chebi":[
"CHEBI:24194",
"CHEBI:39975",
"CHEBI:17515",
"CHEBI:17971",
"CHEBI:10566",
"CHEBI:58173",
"CHEBI:10570",
"CHEBI:24185",
"CHEBI:12404",
"CHEBI:12400"
],
"hmdb":[
"HMDB01049"
],
"inchi_key":[
"RITKHVBHSGLULN-WHFBIAKZSA-M"
],
"kegg.compound":[
"C00669"
],
"metanetx.chemical":[
"MNXM412"
],
"reactome.compound":[
"174393"
],
"sabiork":[
"5172"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00506"
]
}
},
{
"id":"gicolipa_c",
"name":"Glucosyl-inner core oligosaccharide lipid A",
"compartment":"c",
"charge":-11,
"formula":"C151H261N2O79P4",
"notes":{
"original_bigg_ids":[
"gicolipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"gicolipa"
],
"biocyc":[
"META:CPD0-2247"
],
"inchi_key":[
"JIYBFSMTJJSDHN-XHEUBBKESA-C"
],
"metanetx.chemical":[
"MNXM55194"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15479"
]
}
},
{
"id":"trnaile_c",
"name":"TRNA(Ile)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaile_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaile"
],
"biocyc":[
"META:ILE-tRNAs"
],
"chebi":[
"CHEBI:29174",
"CHEBI:15179",
"CHEBI:10683"
],
"kegg.compound":[
"C01644"
],
"metanetx.chemical":[
"MNXM90879"
],
"reactome.compound":[
"379739",
"379750"
],
"sabiork":[
"3832"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27269",
"cpd11915"
]
}
},
{
"id":"udpg_c",
"name":"UDPglucose",
"compartment":"c",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpg_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpg"
],
"biocyc":[
"META:CPD-12575"
],
"chebi":[
"CHEBI:13505",
"CHEBI:52249",
"CHEBI:9845",
"CHEBI:46228",
"CHEBI:46229",
"CHEBI:58367",
"CHEBI:13498",
"CHEBI:28532",
"CHEBI:42885",
"CHEBI:27234",
"CHEBI:18066",
"CHEBI:9895",
"CHEBI:58885",
"CHEBI:22103"
],
"hmdb":[
"HMDB60079"
],
"inchi_key":[
"HSCJRCZFDFQWRP-RDKQLNKOSA-L"
],
"kegg.compound":[
"C00029"
],
"kegg.glycan":[
"G10608"
],
"metanetx.chemical":[
"MNXM722710"
],
"reactome.compound":[
"173594",
"744227",
"29410"
],
"sabiork":[
"3918",
"1277"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00026",
"cpd28293"
]
}
},
{
"id":"glu__L_p",
"name":"L-Glutamate",
"compartment":"p",
"charge":-1,
"formula":"C5H8NO4",
"notes":{
"original_bigg_ids":[
"glu_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"glu__L"
],
"biocyc":[
"META:Glutamates",
"META:GLT"
],
"chebi":[
"CHEBI:76051",
"CHEBI:21301",
"CHEBI:29985",
"CHEBI:42825",
"CHEBI:29987",
"CHEBI:18237",
"CHEBI:24314",
"CHEBI:16015",
"CHEBI:13107",
"CHEBI:5431",
"CHEBI:21304",
"CHEBI:6224",
"CHEBI:14321",
"CHEBI:29988"
],
"hmdb":[
"HMDB00148",
"HMDB60475"
],
"inchi_key":[
"WHUUTDBJXJRKMK-VKHMYHEASA-M"
],
"kegg.compound":[
"C00025",
"C00302"
],
"kegg.drug":[
"D00007",
"D04341"
],
"metanetx.chemical":[
"MNXM89557"
],
"reactome.compound":[
"428614",
"29404",
"113552",
"210382"
],
"sabiork":[
"73",
"2010"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27177",
"cpd00023",
"cpd19002"
]
}
},
{
"id":"ile__L_p",
"name":"L-Isoleucine",
"compartment":"p",
"charge":0,
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"ile_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"ile__L"
],
"biocyc":[
"META:ILE"
],
"chebi":[
"CHEBI:43290",
"CHEBI:32604",
"CHEBI:43342",
"CHEBI:32605",
"CHEBI:17191",
"CHEBI:21344",
"CHEBI:13127",
"CHEBI:43366",
"CHEBI:6255",
"CHEBI:32613",
"CHEBI:32612",
"CHEBI:24898",
"CHEBI:58045"
],
"hmdb":[
"HMDB00172"
],
"inchi_key":[
"AGPKZVBTJJNPAG-WHFBIAKZSA-N"
],
"kegg.compound":[
"C00407"
],
"kegg.drug":[
"D00065"
],
"lipidmaps":[
"LMFA01100047"
],
"metanetx.chemical":[
"MNXM231"
],
"reactome.compound":[
"30102",
"113537"
],
"sabiork":[
"70",
"23116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00322"
]
}
},
{
"id":"pram_c",
"name":"5-Phospho-beta-D-ribosylamine",
"compartment":"c",
"charge":-1,
"formula":"C5H11NO7P",
"notes":{
"original_bigg_ids":[
"pram_c"
]
},
"annotation":{
"bigg.metabolite":[
"pram"
],
"biocyc":[
"META:5-P-BETA-D-RIBOSYL-AMINE"
],
"chebi":[
"CHEBI:12161",
"CHEBI:37737",
"CHEBI:42834",
"CHEBI:2123",
"CHEBI:20626",
"CHEBI:58681"
],
"hmdb":[
"HMDB01128",
"HMDB02347",
"HMDB62576"
],
"inchi_key":[
"SKCBPEVYGOQGJN-TXICZTDVSA-M"
],
"kegg.compound":[
"C03090"
],
"metanetx.chemical":[
"MNXM90003"
],
"reactome.compound":[
"111292"
],
"sabiork":[
"1884"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01982"
]
}
},
{
"id":"gagicolipa_c",
"name":"Galactosyl-glucosyl-inner core oligosaccharide lipid A",
"compartment":"c",
"charge":-11,
"formula":"C157H271N2O84P4",
"notes":{
"original_bigg_ids":[
"gagicolipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"gagicolipa"
],
"biocyc":[
"META:CPD0-2258"
],
"inchi_key":[
"XCYFJKYUDKZCQY-RQZVRRRJSA-C"
],
"metanetx.chemical":[
"MNXM54163"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15469"
]
}
},
{
"id":"imp_p",
"name":"IMP C10H11N4O8P",
"compartment":"p",
"charge":-2,
"formula":"C10H11N4O8P",
"notes":{
"original_bigg_ids":[
"imp_p"
]
},
"annotation":{
"bigg.metabolite":[
"imp"
],
"biocyc":[
"META:IMP"
],
"chebi":[
"CHEBI:43524",
"CHEBI:13373",
"CHEBI:43528",
"CHEBI:19271",
"CHEBI:58053",
"CHEBI:12063",
"CHEBI:43611",
"CHEBI:5849",
"CHEBI:43563",
"CHEBI:12057",
"CHEBI:14457",
"CHEBI:43475",
"CHEBI:43418",
"CHEBI:17202",
"CHEBI:47501",
"CHEBI:13372"
],
"hmdb":[
"HMDB00175"
],
"inchi_key":[
"GRSZFWQUAKGDAV-KQYNXXCUSA-L"
],
"kegg.compound":[
"C00130"
],
"metanetx.chemical":[
"MNXM125"
],
"reactome.compound":[
"2509792",
"29602"
],
"sabiork":[
"1306"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00114"
]
}
},
{
"id":"galt_p",
"name":"Galactitol",
"compartment":"p",
"charge":0,
"formula":"C6H14O6",
"notes":{
"original_bigg_ids":[
"galt_p"
]
},
"annotation":{
"bigg.metabolite":[
"galt"
],
"biocyc":[
"META:GALACTITOL"
],
"chebi":[
"CHEBI:53575",
"CHEBI:5251",
"CHEBI:16813",
"CHEBI:24139",
"CHEBI:14286"
],
"hmdb":[
"HMDB00107"
],
"inchi_key":[
"FBPFZTCFMRRESA-GUCUJZIJSA-N"
],
"kegg.compound":[
"C01697"
],
"metanetx.chemical":[
"MNXM1233"
],
"sabiork":[
"2311"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01171"
]
}
},
{
"id":"glu__D_c",
"name":"D-Glutamate",
"compartment":"c",
"charge":-1,
"formula":"C5H8NO4",
"notes":{
"original_bigg_ids":[
"glu_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"glu__D"
],
"biocyc":[
"META:D-GLT"
],
"chebi":[
"CHEBI:29986",
"CHEBI:12979",
"CHEBI:21023",
"CHEBI:4183",
"CHEBI:29989",
"CHEBI:21022",
"CHEBI:15966"
],
"hmdb":[
"HMDB03339"
],
"inchi_key":[
"WHUUTDBJXJRKMK-GSVOUGTGSA-M"
],
"kegg.compound":[
"C00217"
],
"metanetx.chemical":[
"MNXM331"
],
"sabiork":[
"1978"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00186"
]
}
},
{
"id":"glutrna_c",
"name":"L-Glutamyl-tRNA(Glu)",
"compartment":"c",
"charge":0,
"formula":"C5H7NO3R",
"notes":{
"original_bigg_ids":[
"glutrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"glutrna"
],
"chebi":[
"CHEBI:29157",
"CHEBI:13114",
"CHEBI:6232"
],
"kegg.compound":[
"C02987"
],
"metanetx.chemical":[
"MNXM89752"
],
"reactome.compound":[
"379744",
"379751"
],
"sabiork":[
"3856"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12227"
]
}
},
{
"id":"indole_p",
"name":"Indole",
"compartment":"p",
"charge":0,
"formula":"C8H7N",
"notes":{
"original_bigg_ids":[
"indole_p"
]
},
"annotation":{
"bigg.metabolite":[
"indole"
],
"biocyc":[
"META:INDOLE"
],
"chebi":[
"CHEBI:43537",
"CHEBI:16881",
"CHEBI:35579",
"CHEBI:14444",
"CHEBI:5900",
"CHEBI:24794",
"CHEBI:35581"
],
"hmdb":[
"HMDB00738"
],
"inchi_key":[
"SIKJAQJRHWYJAI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00463"
],
"metanetx.chemical":[
"MNXM377"
],
"reactome.compound":[
"216547"
],
"sabiork":[
"5101"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00359"
]
}
},
{
"id":"trnaglu_c",
"name":"TRNA (Glu)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaglu"
],
"biocyc":[
"META:GLT-tRNAs"
],
"chebi":[
"CHEBI:15175",
"CHEBI:29175",
"CHEBI:10680"
],
"kegg.compound":[
"C01641"
],
"metanetx.chemical":[
"MNXM90886"
],
"reactome.compound":[
"379778",
"379754"
],
"sabiork":[
"3835"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11912"
]
}
},
{
"id":"galur_p",
"name":"D-Galacturonate",
"compartment":"p",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"galur_p"
]
},
"annotation":{
"bigg.metabolite":[
"galur"
],
"biocyc":[
"META:D-Galactopyranuronate"
],
"chebi":[
"CHEBI:20978",
"CHEBI:4153",
"CHEBI:18024",
"CHEBI:20976",
"CHEBI:75525"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-YMDCURPLSA-M"
],
"kegg.compound":[
"C00333"
],
"metanetx.chemical":[
"MNXM48464"
],
"sabiork":[
"2020"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00280"
]
}
},
{
"id":"indole_c",
"name":"Indole",
"compartment":"c",
"charge":0,
"formula":"C8H7N",
"notes":{
"original_bigg_ids":[
"indole_c"
]
},
"annotation":{
"bigg.metabolite":[
"indole"
],
"biocyc":[
"META:INDOLE"
],
"chebi":[
"CHEBI:43537",
"CHEBI:16881",
"CHEBI:35579",
"CHEBI:14444",
"CHEBI:5900",
"CHEBI:24794",
"CHEBI:35581"
],
"hmdb":[
"HMDB00738"
],
"inchi_key":[
"SIKJAQJRHWYJAI-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00463"
],
"metanetx.chemical":[
"MNXM377"
],
"reactome.compound":[
"216547"
],
"sabiork":[
"5101"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00359"
]
}
},
{
"id":"galur_c",
"name":"D-Galacturonate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"galur_c"
]
},
"annotation":{
"bigg.metabolite":[
"galur"
],
"biocyc":[
"META:D-Galactopyranuronate"
],
"chebi":[
"CHEBI:20978",
"CHEBI:4153",
"CHEBI:18024",
"CHEBI:20976",
"CHEBI:75525"
],
"inchi_key":[
"AEMOLEFTQBMNLQ-YMDCURPLSA-M"
],
"kegg.compound":[
"C00333"
],
"metanetx.chemical":[
"MNXM48464"
],
"sabiork":[
"2020"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00280"
]
}
},
{
"id":"gam6p_p",
"name":"D-Glucosamine 6-phosphate",
"compartment":"p",
"charge":-1,
"formula":"C6H13NO8P",
"notes":{
"original_bigg_ids":[
"gam6p_p"
]
},
"annotation":{
"bigg.metabolite":[
"gam6p"
],
"biocyc":[
"META:D-GLUCOSAMINE-6-P"
],
"chebi":[
"CHEBI:12962",
"CHEBI:47987",
"CHEBI:58725"
],
"inchi_key":[
"XHMJOUIAFHJHBW-IVMDWMLBSA-M"
],
"kegg.compound":[
"C00352"
],
"metanetx.chemical":[
"MNXM370"
],
"sabiork":[
"1372"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00288"
]
}
},
{
"id":"glx_c",
"name":"Glyoxylate",
"compartment":"c",
"charge":-1,
"formula":"C2H1O3",
"notes":{
"original_bigg_ids":[
"glx_c"
]
},
"annotation":{
"bigg.metabolite":[
"glx"
],
"biocyc":[
"META:GLYOX"
],
"chebi":[
"CHEBI:24420",
"CHEBI:36655",
"CHEBI:14368",
"CHEBI:24421",
"CHEBI:42767",
"CHEBI:16891",
"CHEBI:35977",
"CHEBI:5509"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/cdffdb1a-3322-4cc1-9171-d857bfaa198a",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/aecbda66-6e98-4c11-aeaf-6a072f4f963c",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/9dc0aa3b-447a-4b5d-8157-501b036f9626",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/43b74f4f-bc8a-4b8b-b587-c97d8e9eed48"
],
"hmdb":[
"HMDB00119"
],
"inchi_key":[
"HHLFWLYXYJOTON-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00048"
],
"metanetx.chemical":[
"MNXM69"
],
"reactome.compound":[
"904849",
"389678"
],
"sabiork":[
"1838"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00040"
]
}
},
{
"id":"ins_p",
"name":"Inosine",
"compartment":"p",
"charge":0,
"formula":"C10H12N4O5",
"notes":{
"original_bigg_ids":[
"ins_p"
]
},
"annotation":{
"bigg.metabolite":[
"ins"
],
"biocyc":[
"META:INOSINE"
],
"chebi":[
"CHEBI:17596",
"CHEBI:24841",
"CHEBI:5927",
"CHEBI:14456",
"CHEBI:44407"
],
"hmdb":[
"HMDB00195"
],
"inchi_key":[
"UGQMRVRMYYASKQ-KQYNXXCUSA-N"
],
"kegg.compound":[
"C00294"
],
"kegg.drug":[
"D00054"
],
"metanetx.chemical":[
"MNXM334"
],
"reactome.compound":[
"83927",
"83921"
],
"sabiork":[
"1868"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00246"
]
}
},
{
"id":"glyald_p",
"name":"D-Glyceraldehyde",
"compartment":"p",
"charge":0,
"formula":"C3H6O3",
"notes":{
"original_bigg_ids":[
"glyald_p"
]
},
"annotation":{
"bigg.metabolite":[
"glyald"
],
"biocyc":[
"META:GLYCERALD"
],
"chebi":[
"CHEBI:17378",
"CHEBI:21025",
"CHEBI:4186",
"CHEBI:12982",
"CHEBI:39973"
],
"inchi_key":[
"MNQZXJOMYWMBOU-VKHMYHEASA-N"
],
"kegg.compound":[
"C00577"
],
"metanetx.chemical":[
"MNXM435"
],
"reactome.compound":[
"30393"
],
"sabiork":[
"1409"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00448"
]
}
},
{
"id":"gam_p",
"name":"D-Glucosamine",
"compartment":"p",
"charge":1,
"formula":"C6H14NO5",
"notes":{
"original_bigg_ids":[
"gam_p"
]
},
"annotation":{
"bigg.metabolite":[
"gam"
],
"biocyc":[
"META:GLUCOSAMINE"
],
"chebi":[
"CHEBI:58723",
"CHEBI:17315",
"CHEBI:4162",
"CHEBI:12961",
"CHEBI:47972",
"CHEBI:47977",
"CHEBI:5417"
],
"hmdb":[
"HMDB06479",
"HMDB01514",
"HMDB15410"
],
"inchi_key":[
"MSWZFWKMSRAUBD-IVMDWMLBSA-O"
],
"kegg.compound":[
"C00329"
],
"kegg.drug":[
"D04334"
],
"metanetx.chemical":[
"MNXM533"
],
"reactome.compound":[
"6786660"
],
"sabiork":[
"1591",
"1592"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01247",
"cpd00276",
"cpd27103"
]
}
},
{
"id":"3c4mop_c",
"name":"3-Carboxy-4-methyl-2-oxopentanoate",
"compartment":"c",
"charge":-2,
"formula":"C7H8O5",
"notes":{
"original_bigg_ids":[
"3c4mop_c"
]
},
"annotation":{
"bigg.metabolite":[
"3c4mop"
],
"biocyc":[
"META:CPD-7100"
],
"chebi":[
"CHEBI:17214",
"CHEBI:19975",
"CHEBI:11765",
"CHEBI:1467"
],
"hmdb":[
"HMDB12149"
],
"inchi_key":[
"HIIZAGQWABAMRR-BYPYZUCNSA-L"
],
"kegg.compound":[
"C04236"
],
"metanetx.chemical":[
"MNXM1602"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02605"
]
}
},
{
"id":"13dpg_c",
"name":"3-Phospho-D-glyceroyl phosphate",
"compartment":"c",
"charge":-4,
"formula":"C3H4O10P2",
"notes":{
"original_bigg_ids":[
"13dpg_c"
]
},
"annotation":{
"bigg.metabolite":[
"13dpg"
],
"biocyc":[
"META:DPG"
],
"chebi":[
"CHEBI:57604",
"CHEBI:20189",
"CHEBI:11881",
"CHEBI:16001",
"CHEBI:1658"
],
"hmdb":[
"HMDB62758"
],
"inchi_key":[
"LJQLQCAXBUHEAZ-UWTATZPHSA-J"
],
"kegg.compound":[
"C00236"
],
"metanetx.chemical":[
"MNXM261"
],
"reactome.compound":[
"29800"
],
"sabiork":[
"21215"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00203"
]
}
},
{
"id":"glyald_c",
"name":"D-Glyceraldehyde",
"compartment":"c",
"charge":0,
"formula":"C3H6O3",
"notes":{
"original_bigg_ids":[
"glyald_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyald"
],
"biocyc":[
"META:GLYCERALD"
],
"chebi":[
"CHEBI:17378",
"CHEBI:21025",
"CHEBI:4186",
"CHEBI:12982",
"CHEBI:39973"
],
"inchi_key":[
"MNQZXJOMYWMBOU-VKHMYHEASA-N"
],
"kegg.compound":[
"C00577"
],
"metanetx.chemical":[
"MNXM435"
],
"reactome.compound":[
"30393"
],
"sabiork":[
"1409"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00448"
]
}
},
{
"id":"3c2hmp_c",
"name":"3-Carboxy-2-hydroxy-4-methylpentanoate",
"compartment":"c",
"charge":-2,
"formula":"C7H10O5",
"notes":{
"original_bigg_ids":[
"3c2hmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"3c2hmp"
],
"biocyc":[
"META:2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE"
],
"chebi":[
"CHEBI:35120",
"CHEBI:20094",
"CHEBI:35121",
"CHEBI:15592",
"CHEBI:35122",
"CHEBI:35114",
"CHEBI:43468",
"CHEBI:11843",
"CHEBI:11760",
"CHEBI:43465",
"CHEBI:1565"
],
"hmdb":[
"HMDB12156"
],
"inchi_key":[
"RNQHMTFBUSSBJQ-CRCLSJGQSA-L"
],
"kegg.compound":[
"C04411"
],
"metanetx.chemical":[
"MNXM891"
],
"sabiork":[
"7292"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02693"
]
}
},
{
"id":"gar_c",
"name":"N1-(5-Phospho-D-ribosyl)glycinamide",
"compartment":"c",
"charge":-1,
"formula":"C7H14N2O8P",
"notes":{
"original_bigg_ids":[
"gar_c"
]
},
"annotation":{
"bigg.metabolite":[
"gar"
],
"biocyc":[
"META:5-PHOSPHO-RIBOSYL-GLYCINEAMIDE"
],
"chebi":[
"CHEBI:20499",
"CHEBI:12623",
"CHEBI:58457",
"CHEBI:18349",
"CHEBI:1983"
],
"hmdb":[
"HMDB02022"
],
"inchi_key":[
"OBQMLSFOUZUIOB-HJZCUYRDSA-M"
],
"kegg.compound":[
"C03838"
],
"metanetx.chemical":[
"MNXM463"
],
"sabiork":[
"1887"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02394"
]
}
},
{
"id":"2ippm_c",
"name":"2-Isopropylmaleate",
"compartment":"c",
"charge":-2,
"formula":"C7H8O4",
"notes":{
"original_bigg_ids":[
"2ippm_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ippm"
],
"biocyc":[
"META:CPD-9451"
],
"chebi":[
"CHEBI:17275",
"CHEBI:19668",
"CHEBI:11604",
"CHEBI:58085",
"CHEBI:1179"
],
"hmdb":[
"HMDB12241"
],
"inchi_key":[
"NJMGRJLQRLFQQX-HYXAFXHYSA-L"
],
"kegg.compound":[
"C02631"
],
"metanetx.chemical":[
"MNXM1706"
],
"sabiork":[
"2472"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01710"
]
}
},
{
"id":"fgam_c",
"name":"N2-Formyl-N1-(5-phospho-D-ribosyl)glycinamide",
"compartment":"c",
"charge":-2,
"formula":"C8H13N2O9P",
"notes":{
"original_bigg_ids":[
"fgam_c"
]
},
"annotation":{
"bigg.metabolite":[
"fgam"
],
"biocyc":[
"META:5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE"
],
"chebi":[
"CHEBI:12635",
"CHEBI:42411",
"CHEBI:58426",
"CHEBI:18272",
"CHEBI:20498",
"CHEBI:1982"
],
"hmdb":[
"HMDB01308",
"HMDB06476"
],
"inchi_key":[
"VDXLUNDMVKSKHO-ZRTZXPPTSA-L"
],
"kegg.compound":[
"C04376"
],
"metanetx.chemical":[
"MNXM453"
],
"reactome.compound":[
"111354"
],
"sabiork":[
"1889"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02678"
]
}
},
{
"id":"3c3hmp_c",
"name":"3-Carboxy-3-hydroxy-4-methylpentanoate",
"compartment":"c",
"charge":-2,
"formula":"C7H10O5",
"notes":{
"original_bigg_ids":[
"3c3hmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"3c3hmp"
],
"biocyc":[
"META:3-CARBOXY-3-HYDROXY-ISOCAPROATE"
],
"chebi":[
"CHEBI:35128",
"CHEBI:1178"
],
"hmdb":[
"HMDB00402"
],
"inchi_key":[
"BITYXLXUCSKTJS-ZETCQYMHSA-L"
],
"kegg.compound":[
"C02504"
],
"lipidmaps":[
"LMFA01170083"
],
"metanetx.chemical":[
"MNXM985"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01646"
]
}
},
{
"id":"gdpddman_c",
"name":"GDP-4-dehydro-6-deoxy-D-mannose",
"compartment":"c",
"charge":-2,
"formula":"C16H21N5O15P2",
"notes":{
"original_bigg_ids":[
"gdpddman_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdpddman"
],
"biocyc":[
"META:GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE"
],
"chebi":[
"CHEBI:13329",
"CHEBI:57964",
"CHEBI:5214",
"CHEBI:21153",
"CHEBI:16955"
],
"inchi_key":[
"PNHLMHWWFOPQLK-BKUUWRAGSA-L"
],
"kegg.compound":[
"C01222"
],
"metanetx.chemical":[
"MNXM516"
],
"reactome.compound":[
"6787618"
],
"sabiork":[
"1566"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00900"
]
}
},
{
"id":"isetac_p",
"name":"Isethionic acid",
"compartment":"p",
"charge":-1,
"formula":"C2H5O4S",
"notes":{
"original_bigg_ids":[
"isetac_p"
]
},
"annotation":{
"bigg.metabolite":[
"isetac"
],
"biocyc":[
"META:CPD-3745"
],
"chebi":[
"CHEBI:1157",
"CHEBI:61904"
],
"hmdb":[
"HMDB03903"
],
"inchi_key":[
"SUMDYPCJJOFFON-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05123"
],
"metanetx.chemical":[
"MNXM1630"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03048"
]
}
},
{
"id":"gdpofuc_c",
"name":"GDP-4-oxo-L-fucose",
"compartment":"c",
"charge":-2,
"formula":"C16H21N5O15P2",
"notes":{
"original_bigg_ids":[
"gdpofuc_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdpofuc"
],
"biocyc":[
"META:CPD0-2128"
],
"chebi":[
"CHEBI:21155",
"CHEBI:5216",
"CHEBI:28530"
],
"inchi_key":[
"PNHLMHWWFOPQLK-WAMCPPDZSA-L"
],
"metanetx.chemical":[
"MNXM54801"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15472"
]
}
},
{
"id":"kdo2lipid4_p",
"name":"KDO(2)-lipid IV(A)",
"compartment":"p",
"charge":-6,
"formula":"C84H148N2O37P2",
"notes":{
"original_bigg_ids":[
"kdo2lipid4_p"
]
},
"annotation":{
"bigg.metabolite":[
"kdo2lipid4"
],
"biocyc":[
"META:KDO2-LIPID-IVA"
],
"chebi":[
"CHEBI:28526",
"CHEBI:60365",
"CHEBI:4477",
"CHEBI:23657"
],
"inchi_key":[
"XAOLJGCZESYRFT-VHSKNIDJSA-H"
],
"kegg.compound":[
"C06025"
],
"kegg.glycan":[
"G11160"
],
"lipidmaps":[
"LMSL02000003"
],
"metanetx.chemical":[
"MNXM824"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03586"
]
}
},
{
"id":"ppgpp_c",
"name":"Guanosine 3',5'-bis(diphosphate)",
"compartment":"c",
"charge":-6,
"formula":"C10H11N5O17P4",
"notes":{
"original_bigg_ids":[
"ppgpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppgpp"
],
"biocyc":[
"META:GUANOSINE-5DP-3DP"
],
"chebi":[
"CHEBI:58215",
"CHEBI:14376",
"CHEBI:14380",
"CHEBI:77828",
"CHEBI:5565",
"CHEBI:24445",
"CHEBI:42747",
"CHEBI:17633"
],
"hmdb":[
"HMDB59638"
],
"inchi_key":[
"BUFLLCUFNHESEH-UUOKFMHZSA-I"
],
"kegg.compound":[
"C01228"
],
"metanetx.chemical":[
"MNXM1189"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00905"
]
}
},
{
"id":"kdo_c",
"name":"3-Deoxy-D-manno-2-octulosonate",
"compartment":"c",
"charge":-1,
"formula":"C8H13O8",
"notes":{
"original_bigg_ids":[
"kdo_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo"
],
"biocyc":[
"META:KDO"
],
"chebi":[
"CHEBI:43577",
"CHEBI:85986"
],
"inchi_key":[
"NNLZBVFSCVTSLA-HXUQBWEZSA-M"
],
"metanetx.chemical":[
"MNXM36403"
],
"sbo":"SBO:0000247"
}
},
{
"id":"gdpmann_c",
"name":"GDP-D-mannose",
"compartment":"c",
"charge":-2,
"formula":"C16H23N5O16P2",
"notes":{
"original_bigg_ids":[
"gdpmann_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdpmann"
],
"biocyc":[
"META:GDP-MANNOSE"
],
"chebi":[
"CHEBI:13328",
"CHEBI:5225",
"CHEBI:42729",
"CHEBI:84881",
"CHEBI:21159",
"CHEBI:57527",
"CHEBI:13333",
"CHEBI:84880",
"CHEBI:15820",
"CHEBI:13340"
],
"hmdb":[
"HMDB01163"
],
"inchi_key":[
"MVMSCBBUIHUTGJ-GDJBGNAASA-L"
],
"kegg.compound":[
"C00096"
],
"kegg.glycan":[
"G10614"
],
"metanetx.chemical":[
"MNXM82"
],
"sabiork":[
"1559",
"3925"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00083"
]
}
},
{
"id":"glyb_p",
"name":"Glycine betaine",
"compartment":"p",
"charge":0,
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"glyb_p"
]
},
"annotation":{
"bigg.metabolite":[
"glyb"
],
"biocyc":[
"META:BETAINE"
],
"chebi":[
"CHEBI:27128",
"CHEBI:12531",
"CHEBI:29050",
"CHEBI:15264",
"CHEBI:24370",
"CHEBI:13895",
"CHEBI:41134",
"CHEBI:22858",
"CHEBI:41139",
"CHEBI:3073",
"CHEBI:17750"
],
"hmdb":[
"HMDB00043",
"HMDB59606"
],
"inchi_key":[
"KWIUHFFTVRNATP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00719"
],
"kegg.drug":[
"D07523"
],
"metanetx.chemical":[
"MNXM289"
],
"reactome.compound":[
"352015",
"6798202"
],
"sabiork":[
"5196"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00540"
]
}
},
{
"id":"ckdo_c",
"name":"CMP-3-deoxy-D-manno-octulosonate",
"compartment":"c",
"charge":-2,
"formula":"C17H24N3O15P",
"notes":{
"original_bigg_ids":[
"ckdo_c"
]
},
"annotation":{
"bigg.metabolite":[
"ckdo"
],
"biocyc":[
"META:CMP-KDO"
],
"chebi":[
"CHEBI:59825",
"CHEBI:86284",
"CHEBI:18014",
"CHEBI:20874",
"CHEBI:13275",
"CHEBI:85987",
"CHEBI:41566",
"CHEBI:3277"
],
"inchi_key":[
"YWWJKULNWGRYAS-UOVSKDHASA-L"
],
"kegg.compound":[
"C04121"
],
"metanetx.chemical":[
"MNXM535"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02546"
]
}
},
{
"id":"glyb_c",
"name":"Glycine betaine",
"compartment":"c",
"charge":0,
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"glyb_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyb"
],
"biocyc":[
"META:BETAINE"
],
"chebi":[
"CHEBI:27128",
"CHEBI:12531",
"CHEBI:29050",
"CHEBI:15264",
"CHEBI:24370",
"CHEBI:13895",
"CHEBI:41134",
"CHEBI:22858",
"CHEBI:41139",
"CHEBI:3073",
"CHEBI:17750"
],
"hmdb":[
"HMDB00043",
"HMDB59606"
],
"inchi_key":[
"KWIUHFFTVRNATP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00719"
],
"kegg.drug":[
"D07523"
],
"metanetx.chemical":[
"MNXM289"
],
"reactome.compound":[
"352015",
"6798202"
],
"sabiork":[
"5196"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00540"
]
}
},
{
"id":"man_c",
"name":"D-Mannose",
"compartment":"c",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"man_c"
]
},
"annotation":{
"bigg.metabolite":[
"man"
],
"biocyc":[
"META:D-mannopyranose"
],
"chebi":[
"CHEBI:4208",
"CHEBI:37684",
"CHEBI:14575",
"CHEBI:16024",
"CHEBI:21057",
"CHEBI:33930",
"CHEBI:12999"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c5f931e8-e7f7-4b73-bed6-48662796fe18"
],
"hmdb":[
"HMDB00169"
],
"inchi_key":[
"WQZGKKKJIJFFOK-QTVWNMPRSA-N"
],
"kegg.compound":[
"C00159"
],
"metanetx.chemical":[
"MNXM182"
],
"reactome.compound":[
"964752",
"6799594",
"429579"
],
"sabiork":[
"1656"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00138",
"cpd27437"
]
}
},
{
"id":"gmp_c",
"name":"GMP C10H12N5O8P",
"compartment":"c",
"charge":-2,
"formula":"C10H12N5O8P",
"notes":{
"original_bigg_ids":[
"gmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmp"
],
"biocyc":[
"META:GMP"
],
"chebi":[
"CHEBI:24449",
"CHEBI:47450",
"CHEBI:58115",
"CHEBI:17345",
"CHEBI:29058",
"CHEBI:13341",
"CHEBI:42979",
"CHEBI:40119",
"CHEBI:42615",
"CHEBI:14381",
"CHEBI:24450",
"CHEBI:42892",
"CHEBI:5228",
"CHEBI:42831",
"CHEBI:42887",
"CHEBI:42647"
],
"hmdb":[
"HMDB01397"
],
"inchi_key":[
"RQFCJASXJCIDSX-UUOKFMHZSA-L"
],
"kegg.compound":[
"C00144"
],
"metanetx.chemical":[
"MNXM113"
],
"sabiork":[
"1309"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00126"
]
}
},
{
"id":"kdo8p_c",
"name":"3-Deoxy-D-manno-octulosonate 8-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C8H12O11P",
"notes":{
"original_bigg_ids":[
"kdo8p_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdo8p"
],
"biocyc":[
"META:KDO-8P"
],
"chebi":[
"CHEBI:18069",
"CHEBI:42115",
"CHEBI:1494",
"CHEBI:58368",
"CHEBI:11788",
"CHEBI:20006",
"CHEBI:85985",
"CHEBI:11552"
],
"inchi_key":[
"IZZNRKJLBIYBJN-HXUQBWEZSA-K"
],
"kegg.compound":[
"C04478"
],
"metanetx.chemical":[
"MNXM722774"
],
"sabiork":[
"7341"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02730"
]
}
},
{
"id":"man1p_c",
"name":"D-Mannose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"man1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"man1p"
],
"biocyc":[
"META:MANNOSE-1P"
],
"chebi":[
"CHEBI:35374",
"CHEBI:22404",
"CHEBI:4210",
"CHEBI:43854",
"CHEBI:12327",
"CHEBI:18205",
"CHEBI:58409",
"CHEBI:10261",
"CHEBI:21058"
],
"hmdb":[
"HMDB01436",
"HMDB06330"
],
"inchi_key":[
"HXXFSFRBOHSIMQ-RWOPYEJCSA-L"
],
"kegg.compound":[
"C00636"
],
"metanetx.chemical":[
"MNXM721"
],
"reactome.compound":[
"532531"
],
"sabiork":[
"1342"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00485"
]
}
},
{
"id":"glyc3p_p",
"name":"Glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C3H7O6P",
"notes":{
"original_bigg_ids":[
"glyc3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"glyc3p"
],
"biocyc":[
"META:GLYCEROL-3P"
],
"chebi":[
"CHEBI:12843",
"CHEBI:26705",
"CHEBI:57597",
"CHEBI:12848",
"CHEBI:42793",
"CHEBI:10648",
"CHEBI:15978"
],
"hmdb":[
"HMDB02722",
"HMDB00126"
],
"inchi_key":[
"AWUCVROLDVIAJX-GSVOUGTGSA-L"
],
"kegg.compound":[
"C00093"
],
"metanetx.chemical":[
"MNXM66"
],
"reactome.compound":[
"188458",
"76114"
],
"sabiork":[
"1296"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00080"
]
}
},
{
"id":"xu5p__L_c",
"name":"L-Xylulose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"xu5p_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"xu5p__L"
],
"biocyc":[
"META:L-XYLULOSE-5-P"
],
"chebi":[
"CHEBI:21427",
"CHEBI:57829",
"CHEBI:13191",
"CHEBI:6328",
"CHEBI:16593"
],
"inchi_key":[
"FNZLKVNUWIIPSJ-WHFBIAKZSA-L"
],
"kegg.compound":[
"C03291"
],
"metanetx.chemical":[
"MNXM1238"
],
"sabiork":[
"1506"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02100"
]
}
},
{
"id":"glyc__R_c",
"name":"(R)-Glycerate",
"compartment":"c",
"charge":-1,
"formula":"C3H5O4",
"notes":{
"original_bigg_ids":[
"glyc_R_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyc__R"
],
"biocyc":[
"META:GLYCERATE"
],
"chebi":[
"CHEBI:21030",
"CHEBI:24348",
"CHEBI:10999",
"CHEBI:21027",
"CHEBI:41990",
"CHEBI:33846",
"CHEBI:33508",
"CHEBI:4187",
"CHEBI:24349",
"CHEBI:12985",
"CHEBI:33871",
"CHEBI:16659",
"CHEBI:32398"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/6be053c1-d456-4f14-a62a-26231b127f45",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/42fb796b-d2e8-4cf9-ba19-d4d843d29da0"
],
"hmdb":[
"HMDB31818",
"HMDB00139"
],
"inchi_key":[
"RBNPOMFGQQGHHO-UWTATZPHSA-M"
],
"kegg.compound":[
"C00258"
],
"metanetx.chemical":[
"MNXM189"
],
"reactome.compound":[
"6799497"
],
"sabiork":[
"3917",
"1999"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00223"
]
}
},
{
"id":"gdp_p",
"name":"GDP C10H12N5O11P2",
"compartment":"p",
"charge":-3,
"formula":"C10H12N5O11P2",
"notes":{
"original_bigg_ids":[
"gdp_p"
]
},
"annotation":{
"bigg.metabolite":[
"gdp"
],
"biocyc":[
"META:GDP"
],
"chebi":[
"CHEBI:5212",
"CHEBI:17552",
"CHEBI:58189",
"CHEBI:13327",
"CHEBI:42738",
"CHEBI:14379",
"CHEBI:24448",
"CHEBI:65180"
],
"hmdb":[
"HMDB01201"
],
"inchi_key":[
"QGWNDRXFNXRZMB-UUOKFMHZSA-K"
],
"kegg.compound":[
"C00035"
],
"kegg.glycan":[
"G10620"
],
"metanetx.chemical":[
"MNXM30"
],
"reactome.compound":[
"113525",
"29420",
"205689",
"111349"
],
"sabiork":[
"1280"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00031"
]
}
},
{
"id":"k_p",
"name":"Potassium",
"compartment":"p",
"charge":1,
"formula":"K",
"notes":{
"original_bigg_ids":[
"k_p"
]
},
"annotation":{
"bigg.metabolite":[
"k"
],
"biocyc":[
"META:K+"
],
"chebi":[
"CHEBI:26219",
"CHEBI:29103",
"CHEBI:8345",
"CHEBI:49685"
],
"hmdb":[
"HMDB00586"
],
"inchi_key":[
"NPYPAHLBTDXSSS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00238"
],
"kegg.drug":[
"D08403"
],
"metanetx.chemical":[
"MNXM95"
],
"reactome.compound":[
"74126",
"5626313",
"29804"
],
"sabiork":[
"21"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00205"
]
}
},
{
"id":"glycogen_c",
"name":"Glycogen C6H10O5",
"compartment":"c",
"charge":0,
"formula":"C6H10O5",
"notes":{
"original_bigg_ids":[
"glycogen_c"
]
},
"annotation":{
"bigg.metabolite":[
"glycogen"
],
"biocyc":[
"META:Glycogens"
],
"chebi":[
"CHEBI:24379",
"CHEBI:28087",
"CHEBI:5466",
"CHEBI:24384"
],
"hmdb":[
"HMDB00757"
],
"kegg.compound":[
"C00182"
],
"kegg.glycan":[
"G11603"
],
"metanetx.chemical":[
"MNXM55375"
],
"sabiork":[
"1962"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27186",
"cpd00155"
]
}
},
{
"id":"glyc__R_p",
"name":"(R)-Glycerate",
"compartment":"p",
"charge":-1,
"formula":"C3H5O4",
"notes":{
"original_bigg_ids":[
"glyc_R_p"
]
},
"annotation":{
"bigg.metabolite":[
"glyc__R"
],
"biocyc":[
"META:GLYCERATE"
],
"chebi":[
"CHEBI:21030",
"CHEBI:24348",
"CHEBI:10999",
"CHEBI:21027",
"CHEBI:41990",
"CHEBI:33846",
"CHEBI:33508",
"CHEBI:4187",
"CHEBI:24349",
"CHEBI:12985",
"CHEBI:33871",
"CHEBI:16659",
"CHEBI:32398"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/6be053c1-d456-4f14-a62a-26231b127f45",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/42fb796b-d2e8-4cf9-ba19-d4d843d29da0"
],
"hmdb":[
"HMDB31818",
"HMDB00139"
],
"inchi_key":[
"RBNPOMFGQQGHHO-UWTATZPHSA-M"
],
"kegg.compound":[
"C00258"
],
"metanetx.chemical":[
"MNXM189"
],
"reactome.compound":[
"6799497"
],
"sabiork":[
"3917",
"1999"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00223"
]
}
},
{
"id":"uLa4n_p",
"name":"Undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose",
"compartment":"p",
"charge":0,
"formula":"C60H100N1O7P1",
"notes":{
"original_bigg_ids":[
"uLa4n_p"
]
},
"annotation":{
"bigg.metabolite":[
"uLa4n"
],
"metanetx.chemical":[
"MNXM90891"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15576"
]
}
},
{
"id":"3pg_c",
"name":"3-Phospho-D-glycerate",
"compartment":"c",
"charge":-3,
"formula":"C3H4O7P",
"notes":{
"original_bigg_ids":[
"3pg_c"
]
},
"annotation":{
"bigg.metabolite":[
"3pg"
],
"biocyc":[
"META:G3P"
],
"chebi":[
"CHEBI:11879",
"CHEBI:11880",
"CHEBI:17794",
"CHEBI:21029",
"CHEBI:1657",
"CHEBI:58272",
"CHEBI:12987"
],
"hmdb":[
"HMDB60180"
],
"inchi_key":[
"OSJPPGNTCRNQQC-UWTATZPHSA-K"
],
"kegg.compound":[
"C00197"
],
"metanetx.chemical":[
"MNXM126"
],
"reactome.compound":[
"6799493",
"29728"
],
"sabiork":[
"21216"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00169"
]
}
},
{
"id":"bglycogen_c",
"name":"Branching glycogen",
"compartment":"c",
"charge":0,
"formula":"C6H10O5",
"notes":{
"original_bigg_ids":[
"bglycogen_c"
]
},
"annotation":{
"bigg.metabolite":[
"bglycogen"
],
"metanetx.chemical":[
"MNXM8348"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15413"
]
}
},
{
"id":"udcpp_p",
"name":"Undecaprenyl phosphate",
"compartment":"p",
"charge":-2,
"formula":"C55H89O4P",
"notes":{
"original_bigg_ids":[
"udcpp_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcpp"
],
"biocyc":[
"META:UNDECAPRENYL-P"
],
"chebi":[
"CHEBI:15286",
"CHEBI:57654",
"CHEBI:15285",
"CHEBI:9864",
"CHEBI:16141"
],
"inchi_key":[
"UFPHFKCTOZIAFY-RDQGWRCRSA-L"
],
"kegg.compound":[
"C00348"
],
"lipidmaps":[
"LMPR03020006"
],
"metanetx.chemical":[
"MNXM251"
],
"sabiork":[
"2026"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00286"
]
}
},
{
"id":"acglc__D_c",
"name":"6-Acetyl-D-glucose",
"compartment":"c",
"charge":0,
"formula":"C8H14O7",
"notes":{
"original_bigg_ids":[
"acglc_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"acglc__D"
],
"biocyc":[
"META:CPD-522"
],
"chebi":[
"CHEBI:2166",
"CHEBI:17901",
"CHEBI:12204",
"CHEBI:20693",
"CHEBI:62111"
],
"inchi_key":[
"ILLOJQCWUBEHBA-KEWYIRBNSA-N"
],
"kegg.compound":[
"C02655"
],
"metanetx.chemical":[
"MNXM722855"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01726"
]
}
},
{
"id":"glyclt_c",
"name":"Glycolate C2H3O3",
"compartment":"c",
"charge":-1,
"formula":"C2H3O3",
"notes":{
"original_bigg_ids":[
"glyclt_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyclt"
],
"biocyc":[
"META:GLYCOLLATE"
],
"chebi":[
"CHEBI:24388",
"CHEBI:5475",
"CHEBI:17497",
"CHEBI:14348",
"CHEBI:24390",
"CHEBI:29805",
"CHEBI:42865"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/65f8bf08-1b83-49cd-8f44-8591a6b78f5f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/fadcee01-99f5-4203-9a94-43ad453f2124",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a241561-612f-4e82-99c8-d4ce30c862bf",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/8b8341da-ab0c-4974-87a5-7515166e2965"
],
"hmdb":[
"HMDB03035",
"HMDB00115"
],
"inchi_key":[
"AEMRFAOFKBGASW-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00160"
],
"metanetx.chemical":[
"MNXM222"
],
"reactome.compound":[
"389822"
],
"sabiork":[
"1953"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12347",
"cpd00139"
]
}
},
{
"id":"lald__D_c",
"name":"D-Lactaldehyde",
"compartment":"c",
"charge":0,
"formula":"C3H6O2",
"notes":{
"original_bigg_ids":[
"lald_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"lald__D"
],
"biocyc":[
"META:CPD-358"
],
"chebi":[
"CHEBI:11000",
"CHEBI:340",
"CHEBI:17167",
"CHEBI:18683"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/40a73f79-ca1a-42bb-a386-b7c5f7d72f1d"
],
"hmdb":[
"HMDB06949",
"HMDB06458"
],
"inchi_key":[
"BSABBBMNWQWLLU-GSVOUGTGSA-N"
],
"kegg.compound":[
"C00937"
],
"metanetx.chemical":[
"MNXM909"
],
"sabiork":[
"2191"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00693"
]
}
},
{
"id":"glyclt_p",
"name":"Glycolate C2H3O3",
"compartment":"p",
"charge":-1,
"formula":"C2H3O3",
"notes":{
"original_bigg_ids":[
"glyclt_p"
]
},
"annotation":{
"bigg.metabolite":[
"glyclt"
],
"biocyc":[
"META:GLYCOLLATE"
],
"chebi":[
"CHEBI:24388",
"CHEBI:5475",
"CHEBI:17497",
"CHEBI:14348",
"CHEBI:24390",
"CHEBI:29805",
"CHEBI:42865"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/65f8bf08-1b83-49cd-8f44-8591a6b78f5f",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/fadcee01-99f5-4203-9a94-43ad453f2124",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/9a241561-612f-4e82-99c8-d4ce30c862bf",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/8b8341da-ab0c-4974-87a5-7515166e2965"
],
"hmdb":[
"HMDB03035",
"HMDB00115"
],
"inchi_key":[
"AEMRFAOFKBGASW-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00160"
],
"metanetx.chemical":[
"MNXM222"
],
"reactome.compound":[
"389822"
],
"sabiork":[
"1953"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12347",
"cpd00139"
]
}
},
{
"id":"glcn_p",
"name":"D-Gluconate",
"compartment":"p",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"glcn_p"
]
},
"annotation":{
"bigg.metabolite":[
"glcn"
],
"biocyc":[
"META:GLUCONATE"
],
"chebi":[
"CHEBI:20983",
"CHEBI:20985",
"CHEBI:18391",
"CHEBI:20986",
"CHEBI:24265",
"CHEBI:24266",
"CHEBI:12955",
"CHEBI:33198",
"CHEBI:4157",
"CHEBI:42715"
],
"hmdb":[
"HMDB00625",
"HMDB03373"
],
"inchi_key":[
"RGHNJXZEOKUKBD-SQOUGZDYSA-M"
],
"kegg.compound":[
"C00257"
],
"metanetx.chemical":[
"MNXM341"
],
"sabiork":[
"23420",
"1998"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00222"
]
}
},
{
"id":"lcts_p",
"name":"Lactose C12H22O11",
"compartment":"p",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"lcts_p"
]
},
"annotation":{
"bigg.metabolite":[
"lcts"
],
"biocyc":[
"META:CPD-15971",
"META:CPD-15972"
],
"chebi":[
"CHEBI:14497",
"CHEBI:10296",
"CHEBI:10428",
"CHEBI:25005",
"CHEBI:27968",
"CHEBI:36218",
"CHEBI:22846",
"CHEBI:22760",
"CHEBI:10380",
"CHEBI:613009",
"CHEBI:35463",
"CHEBI:17716",
"CHEBI:43665",
"CHEBI:27755",
"CHEBI:22460",
"CHEBI:28577"
],
"hmdb":[
"HMDB41627"
],
"inchi_key":[
"GUBGYTABKSRVRQ-QKKXKWKRSA-N"
],
"kegg.compound":[
"C00243",
"C01970"
],
"kegg.drug":[
"D00046"
],
"kegg.glycan":[
"G10504"
],
"metanetx.chemical":[
"MNXM362"
],
"sabiork":[
"1376",
"104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03809",
"cpd00208",
"cpd01354"
]
}
},
{
"id":"2h3oppan_c",
"name":"2-Hydroxy-3-oxopropanoate",
"compartment":"c",
"charge":-1,
"formula":"C3H3O4",
"notes":{
"original_bigg_ids":[
"2h3oppan_c"
]
},
"annotation":{
"bigg.metabolite":[
"2h3oppan"
],
"biocyc":[
"META:TARTRONATE-S-ALD"
],
"chebi":[
"CHEBI:57978",
"CHEBI:11583",
"CHEBI:16992",
"CHEBI:19605",
"CHEBI:1123",
"CHEBI:15194"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8d90d1ea-105d-4bc4-aa70-509cf924dde0",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/41dfb598-597f-4cf0-9667-c2b6573aef5c"
],
"hmdb":[
"HMDB06781",
"HMDB06938"
],
"inchi_key":[
"QWBAFPFNGRFSFB-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01146"
],
"metanetx.chemical":[
"MNXM475"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00843"
]
}
},
{
"id":"lgt__S_c",
"name":"(R)-S-Lactoylglutathione",
"compartment":"c",
"charge":-1,
"formula":"C13H20N3O8S",
"notes":{
"original_bigg_ids":[
"lgt_S_c"
]
},
"annotation":{
"bigg.metabolite":[
"lgt__S"
],
"biocyc":[
"META:S-LACTOYL-GLUTATHIONE"
],
"chebi":[
"CHEBI:57474",
"CHEBI:355",
"CHEBI:18678",
"CHEBI:11014",
"CHEBI:15694"
],
"hmdb":[
"HMDB01066",
"HMDB62624"
],
"inchi_key":[
"VDYDCVUWILIYQF-CSMHCCOUSA-M"
],
"kegg.compound":[
"C03451"
],
"metanetx.chemical":[
"MNXM1253"
],
"reactome.compound":[
"5694130"
],
"sabiork":[
"24624",
"3008"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02182"
]
}
},
{
"id":"4mop_c",
"name":"4-Methyl-2-oxopentanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O3",
"notes":{
"original_bigg_ids":[
"4mop_c"
]
},
"annotation":{
"bigg.metabolite":[
"4mop"
],
"biocyc":[
"META:2K-4CH3-PENTANOATE"
],
"chebi":[
"CHEBI:1891",
"CHEBI:12020",
"CHEBI:20438",
"CHEBI:48430",
"CHEBI:41619",
"CHEBI:17865"
],
"hmdb":[
"HMDB00695",
"HMDB00762"
],
"inchi_key":[
"BKAJNAXTPSGJCU-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00233"
],
"metanetx.chemical":[
"MNXM404"
],
"sabiork":[
"1985"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00200"
]
}
},
{
"id":"trnagly_c",
"name":"TRNA(Gly)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnagly_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnagly"
],
"biocyc":[
"META:GLY-tRNAs"
],
"chebi":[
"CHEBI:10681",
"CHEBI:15177",
"CHEBI:29176"
],
"kegg.compound":[
"C01642"
],
"metanetx.chemical":[
"MNXM90340"
],
"reactome.compound":[
"379766",
"379770"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11913",
"cpd27116"
]
}
},
{
"id":"5dh4dglc_c",
"name":"5-Dehydro-4-deoxy-D-glucarate",
"compartment":"c",
"charge":-2,
"formula":"C6H6O7",
"notes":{
"original_bigg_ids":[
"5dh4dglc_c"
]
},
"annotation":{
"bigg.metabolite":[
"5dh4dglc"
],
"biocyc":[
"META:5-KETO-4-DEOXY-D-GLUCARATE"
],
"chebi":[
"CHEBI:35453",
"CHEBI:16369",
"CHEBI:12117",
"CHEBI:20561",
"CHEBI:35454",
"CHEBI:42815",
"CHEBI:42819",
"CHEBI:2048",
"CHEBI:43704"
],
"inchi_key":[
"QUURPCHWPQNNGL-ZAFYKAAXSA-L"
],
"kegg.compound":[
"C00679"
],
"metanetx.chemical":[
"MNXM854"
],
"sabiork":[
"5177"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00515"
]
}
},
{
"id":"leutrna_c",
"name":"L-Leucyl-tRNA(Leu)",
"compartment":"c",
"charge":1,
"formula":"C6H12NOR",
"notes":{
"original_bigg_ids":[
"leutrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"leutrna"
],
"chebi":[
"CHEBI:16624",
"CHEBI:13133",
"CHEBI:6262",
"CHEBI:13134"
],
"kegg.compound":[
"C02047"
],
"metanetx.chemical":[
"MNXM697"
],
"reactome.compound":[
"379773",
"379757"
],
"sabiork":[
"3869"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12003"
]
}
},
{
"id":"glytrna_c",
"name":"Glycyl-tRNA(Gly)",
"compartment":"c",
"charge":1,
"formula":"C2H4NOR",
"notes":{
"original_bigg_ids":[
"glytrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"glytrna"
],
"chebi":[
"CHEBI:29156",
"CHEBI:14363",
"CHEBI:5503"
],
"kegg.compound":[
"C02412"
],
"metanetx.chemical":[
"MNXM89763"
],
"reactome.compound":[
"379781",
"379784"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12100"
]
}
},
{
"id":"trnaleu_c",
"name":"TRNA(Leu)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaleu_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaleu"
],
"biocyc":[
"META:LEU-tRNAs"
],
"chebi":[
"CHEBI:10684",
"CHEBI:29169",
"CHEBI:15180"
],
"kegg.compound":[
"C01645"
],
"metanetx.chemical":[
"MNXM90880"
],
"reactome.compound":[
"379788",
"379771"
],
"sabiork":[
"3850"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11916",
"cpd27383"
]
}
},
{
"id":"gly_p",
"name":"Glycine",
"compartment":"p",
"charge":0,
"formula":"C2H5NO2",
"notes":{
"original_bigg_ids":[
"gly_p"
]
},
"annotation":{
"bigg.metabolite":[
"gly"
],
"biocyc":[
"META:GLY"
],
"chebi":[
"CHEBI:32508",
"CHEBI:32507",
"CHEBI:15428",
"CHEBI:42964",
"CHEBI:14344",
"CHEBI:24368",
"CHEBI:10792",
"CHEBI:5460",
"CHEBI:57305"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/19441357-44af-48e1-b5ac-0e48c8dcbb87",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/870d7ca5-6659-40eb-8b5d-858bd29cddaa"
],
"hmdb":[
"HMDB00123"
],
"inchi_key":[
"DHMQDGOQFOQNFH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00037"
],
"kegg.drug":[
"D00011"
],
"metanetx.chemical":[
"MNXM29"
],
"reactome.compound":[
"29424",
"193446",
"113545",
"159549",
"266029"
],
"sabiork":[
"66"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00033"
]
}
},
{
"id":"murein5p5p5p_p",
"name":"Three linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-6,
"formula":"C120H186N24O63",
"notes":{
"original_bigg_ids":[
"murein5p5p5p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5p5p5p"
],
"inchi_key":[
"FOZGDVCGOFWZKF-SSRSPRHQSA-G"
],
"metanetx.chemical":[
"MNXM7807"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15512"
]
}
},
{
"id":"leu__L_p",
"name":"L-Leucine",
"compartment":"p",
"charge":0,
"formula":"C6H13NO2",
"notes":{
"original_bigg_ids":[
"leu_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"leu__L"
],
"biocyc":[
"META:LEU"
],
"chebi":[
"CHEBI:32620",
"CHEBI:25017",
"CHEBI:43695",
"CHEBI:21348",
"CHEBI:13131",
"CHEBI:43733",
"CHEBI:43646",
"CHEBI:43814",
"CHEBI:6260",
"CHEBI:32628",
"CHEBI:32627",
"CHEBI:10866",
"CHEBI:57427",
"CHEBI:32619",
"CHEBI:15603"
],
"hmdb":[
"HMDB00687",
"HMDB62203"
],
"inchi_key":[
"ROHFNLRQFUQHCH-YFKPBYRVSA-N"
],
"kegg.compound":[
"C16439",
"C00123"
],
"kegg.drug":[
"D00030"
],
"lipidmaps":[
"LMFA01100048"
],
"metanetx.chemical":[
"MNXM140"
],
"reactome.compound":[
"29588",
"113580",
"351964"
],
"sabiork":[
"21059",
"69"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00107",
"cpd15143"
]
}
},
{
"id":"murein4px4p_p",
"name":"Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C74H112N14O39",
"notes":{
"original_bigg_ids":[
"murein4px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4px4p"
],
"metanetx.chemical":[
"MNXM5316"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15506"
]
}
},
{
"id":"gmhep1p_c",
"name":"D-Glycero-D-manno-heptose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C7H13O10P",
"notes":{
"original_bigg_ids":[
"gmhep1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmhep1p"
],
"biocyc":[
"META:D-BETA-D-HEPTOSE-1-P"
],
"chebi":[
"CHEBI:21031",
"CHEBI:60002",
"CHEBI:28137",
"CHEBI:61593",
"CHEBI:4189"
],
"inchi_key":[
"KMEJCSKJXSBBAN-QTNLNCNHSA-L"
],
"kegg.compound":[
"C07838"
],
"metanetx.chemical":[
"MNXM1661"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd04920"
]
}
},
{
"id":"gmhep17bp_c",
"name":"D-Glycero-D-manno-heptose 1,7-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C7H12O13P2",
"notes":{
"original_bigg_ids":[
"gmhep17bp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmhep17bp"
],
"chebi":[
"CHEBI:59957",
"CHEBI:4188"
],
"inchi_key":[
"LMTGTTLGDUACSJ-NNPWBXLPSA-J"
],
"metanetx.chemical":[
"MNXM48518"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29677"
]
}
},
{
"id":"lipa_p",
"name":"KDO(2)-lipid (A)",
"compartment":"p",
"charge":-6,
"formula":"C110H196N2O39P2",
"notes":{
"original_bigg_ids":[
"lipa_p"
]
},
"annotation":{
"bigg.metabolite":[
"lipa"
],
"chebi":[
"CHEBI:27963",
"CHEBI:4476",
"CHEBI:23656",
"CHEBI:58540"
],
"inchi_key":[
"DIXUKJUHGLIZGU-OIPVZEHTSA-H"
],
"kegg.compound":[
"C06026"
],
"lipidmaps":[
"LMSL02000001"
],
"metanetx.chemical":[
"MNXM946"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03587"
]
}
},
{
"id":"gmhep7p_c",
"name":"D-Glycero-D-manno-heptose 7-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C7H13O10P",
"notes":{
"original_bigg_ids":[
"gmhep7p_c"
]
},
"annotation":{
"bigg.metabolite":[
"gmhep7p"
],
"biocyc":[
"META:D-ALPHABETA-D-HEPTOSE-7-PHOSPHATE",
"META:CPD-12543"
],
"chebi":[
"CHEBI:28723",
"CHEBI:4190",
"CHEBI:59955",
"CHEBI:60202",
"CHEBI:21032",
"CHEBI:60204"
],
"inchi_key":[
"SDADNVAZGVDAIM-ZUHYCWGWSA-L"
],
"kegg.compound":[
"C07836",
"C19882"
],
"metanetx.chemical":[
"MNXM722761"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21122",
"cpd26805",
"cpd04918"
]
}
},
{
"id":"murein4px4px4p_p",
"name":"Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala) & tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)",
"compartment":"p",
"charge":-6,
"formula":"C111H167N21O58",
"notes":{
"original_bigg_ids":[
"murein4px4px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4px4px4p"
],
"metanetx.chemical":[
"MNXM6451"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15508"
]
}
},
{
"id":"lipidAds_c",
"name":"Lipid A Disaccharide",
"compartment":"c",
"charge":-2,
"formula":"C68H127N2O20P",
"notes":{
"original_bigg_ids":[
"lipidAds_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidAds"
],
"biocyc":[
"META:BISOHMYR-GLC"
],
"chebi":[
"CHEBI:18380",
"CHEBI:11415",
"CHEBI:11414",
"CHEBI:19293",
"CHEBI:58466",
"CHEBI:862"
],
"inchi_key":[
"HLDJGHAAKRKPAV-QDORLFPLSA-L"
],
"kegg.compound":[
"C04932"
],
"metanetx.chemical":[
"MNXM1569"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03002"
]
}
},
{
"id":"murein5p4p_p",
"name":"Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C77H119N15O41",
"notes":{
"original_bigg_ids":[
"murein5p4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5p4p"
],
"inchi_key":[
"YJNGRCZHKAYCMA-VZNOAHCOSA-E"
],
"metanetx.chemical":[
"MNXM5971"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15510"
]
}
},
{
"id":"xmp_c",
"name":"Xanthosine 5'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C10H11N4O9P",
"notes":{
"original_bigg_ids":[
"xmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"xmp"
],
"biocyc":[
"META:XANTHOSINE-5-PHOSPHATE"
],
"chebi":[
"CHEBI:10938",
"CHEBI:57464",
"CHEBI:27328",
"CHEBI:15324",
"CHEBI:10067",
"CHEBI:15652"
],
"hmdb":[
"HMDB01554",
"HMDB62755"
],
"inchi_key":[
"DCTLYFZHFGENCW-UUOKFMHZSA-L"
],
"kegg.compound":[
"C00655"
],
"metanetx.chemical":[
"MNXM298"
],
"reactome.compound":[
"111584"
],
"sabiork":[
"1686"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00497"
]
}
},
{
"id":"lipidX_c",
"name":"2,3-Bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C34H64NO12P",
"notes":{
"original_bigg_ids":[
"lipidX_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidX"
],
"biocyc":[
"META:BISOHMYR-GLUCOSAMINYL-1P"
],
"chebi":[
"CHEBI:16942",
"CHEBI:57957",
"CHEBI:19303",
"CHEBI:11413",
"CHEBI:870"
],
"inchi_key":[
"HEHQDWUWJVPREQ-XQJZMFRCSA-L"
],
"kegg.compound":[
"C04824"
],
"lipidmaps":[
"LMSL01020001"
],
"metanetx.chemical":[
"MNXM1839"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29679",
"cpd02930"
]
}
},
{
"id":"gmp_p",
"name":"GMP C10H12N5O8P",
"compartment":"p",
"charge":-2,
"formula":"C10H12N5O8P",
"notes":{
"original_bigg_ids":[
"gmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"gmp"
],
"biocyc":[
"META:GMP"
],
"chebi":[
"CHEBI:24449",
"CHEBI:47450",
"CHEBI:58115",
"CHEBI:17345",
"CHEBI:29058",
"CHEBI:13341",
"CHEBI:42979",
"CHEBI:40119",
"CHEBI:42615",
"CHEBI:14381",
"CHEBI:24450",
"CHEBI:42892",
"CHEBI:5228",
"CHEBI:42831",
"CHEBI:42887",
"CHEBI:42647"
],
"hmdb":[
"HMDB01397"
],
"inchi_key":[
"RQFCJASXJCIDSX-UUOKFMHZSA-L"
],
"kegg.compound":[
"C00144"
],
"metanetx.chemical":[
"MNXM113"
],
"sabiork":[
"1309"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00126"
]
}
},
{
"id":"murein4p4p_p",
"name":"Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C74H114N14O40",
"notes":{
"original_bigg_ids":[
"murein4p4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4p4p"
],
"biocyc":[
"META:CPD0-2269"
],
"inchi_key":[
"VTZDBMVDVOTCFD-UHFFFAOYSA-G"
],
"metanetx.chemical":[
"MNXM88347"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15505"
]
}
},
{
"id":"u23ga_c",
"name":"UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine",
"compartment":"c",
"charge":-2,
"formula":"C43H75N3O20P2",
"notes":{
"original_bigg_ids":[
"u23ga_c"
]
},
"annotation":{
"bigg.metabolite":[
"u23ga"
],
"biocyc":[
"META:OH-MYRISTOYL"
],
"chebi":[
"CHEBI:78847",
"CHEBI:82845"
],
"inchi_key":[
"KOJCFMYSTWNMQW-RUAJDYCTSA-L"
],
"kegg.compound":[
"C04652"
],
"metanetx.chemical":[
"MNXM1199"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02835"
]
}
},
{
"id":"murein5p3p_p",
"name":"Two linked disacharide pentapeptide and tripeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C74H114N14O40",
"notes":{
"original_bigg_ids":[
"murein5p3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5p3p"
],
"inchi_key":[
"SBOXLYQXPDGZLN-UHFFFAOYSA-G"
],
"metanetx.chemical":[
"MNXM5972"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15509"
]
}
},
{
"id":"murein4p3p_p",
"name":"Two linked disacharide tetrapeptide and tripeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C71H109N13O39",
"notes":{
"original_bigg_ids":[
"murein4p3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4p3p"
],
"inchi_key":[
"AKLORNSFZCNZDU-UHFFFAOYSA-H"
],
"metanetx.chemical":[
"MNXM88346"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15504"
]
}
},
{
"id":"murein3px4p_p",
"name":"Two disacharide linked murein units, tripeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C71H107N13O38",
"notes":{
"original_bigg_ids":[
"murein3px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein3px4p"
],
"biocyc":[
"META:CPD0-2273"
],
"inchi_key":[
"LOVDDQLBOGPFKC-UHFFFAOYSA-H"
],
"metanetx.chemical":[
"MNXM88341"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15503"
]
}
},
{
"id":"gdpfuc_c",
"name":"GDP-L-fucose",
"compartment":"c",
"charge":-2,
"formula":"C16H23N5O15P2",
"notes":{
"original_bigg_ids":[
"gdpfuc_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdpfuc"
],
"biocyc":[
"META:CPD-13118",
"META:GUANOSINE_DIPHOSPHATE_FUCOSE"
],
"chebi":[
"CHEBI:13335",
"CHEBI:57984",
"CHEBI:13332",
"CHEBI:17009",
"CHEBI:57273",
"CHEBI:5221",
"CHEBI:21162"
],
"hmdb":[
"HMDB01095"
],
"inchi_key":[
"LQEBEXMHBLQMDB-JGQUBWHWSA-L"
],
"kegg.compound":[
"C00325"
],
"kegg.glycan":[
"G10615"
],
"metanetx.chemical":[
"MNXM193"
],
"reactome.compound":[
"742368",
"205683"
],
"sabiork":[
"1562"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23744",
"cpd27127",
"cpd00272"
]
}
},
{
"id":"ser__L_p",
"name":"L-Serine",
"compartment":"p",
"charge":0,
"formula":"C3H7NO3",
"notes":{
"original_bigg_ids":[
"ser_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"ser__L"
],
"biocyc":[
"META:SER",
"META:Serines"
],
"chebi":[
"CHEBI:32845",
"CHEBI:17822",
"CHEBI:26648",
"CHEBI:45440",
"CHEBI:21387",
"CHEBI:32837",
"CHEBI:13167",
"CHEBI:45451",
"CHEBI:32836",
"CHEBI:15081",
"CHEBI:45590",
"CHEBI:35243",
"CHEBI:32846",
"CHEBI:17115",
"CHEBI:45597",
"CHEBI:33384",
"CHEBI:45677",
"CHEBI:6301",
"CHEBI:9116"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/207ebcd7-f859-4b01-8a69-9b99fb380595"
],
"hmdb":[
"HMDB00589",
"HMDB00187",
"HMDB62263"
],
"inchi_key":[
"MTCFGRXMJLQNBG-REOHCLBHSA-N"
],
"kegg.compound":[
"C00716",
"C00065"
],
"kegg.drug":[
"D00016"
],
"lipidmaps":[
"LMFA01100045"
],
"metanetx.chemical":[
"MNXM53"
],
"reactome.compound":[
"352002",
"379732",
"8932979",
"200736"
],
"sabiork":[
"2140",
"75"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28171",
"cpd00054",
"cpd30743"
]
}
},
{
"id":"inost_c",
"name":"Myo-Inositol",
"compartment":"c",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"inost_c"
]
},
"annotation":{
"bigg.metabolite":[
"inost"
],
"biocyc":[
"META:CPD-8052",
"META:MYO-INOSITOL"
],
"chebi":[
"CHEBI:4200",
"CHEBI:12826",
"CHEBI:17268",
"CHEBI:27372",
"CHEBI:43559",
"CHEBI:25451",
"CHEBI:19183",
"CHEBI:24848",
"CHEBI:10601",
"CHEBI:52772",
"CHEBI:12831"
],
"hmdb":[
"HMDB02256",
"HMDB00211",
"HMDB34220"
],
"inchi_key":[
"CDAISMWEOUEBRE-GPIVLXJGSA-N"
],
"kegg.compound":[
"C00137",
"C19891"
],
"kegg.drug":[
"D08079"
],
"metanetx.chemical":[
"MNXM127"
],
"reactome.compound":[
"426910",
"429130"
],
"sabiork":[
"5010",
"25454"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21131",
"cpd00121"
]
}
},
{
"id":"1ddecg3p_p",
"name":"1-dodecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C15H29O7P1",
"notes":{
"original_bigg_ids":[
"1ddecg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"1ddecg3p"
],
"biocyc":[
"META:CPD0-2200"
],
"chebi":[
"CHEBI:72682",
"CHEBI:62840"
],
"hmdb":[
"HMDB62319"
],
"inchi_key":[
"STTKJLVEXMKLNA-CQSZACIVSA-L"
],
"lipidmaps":[
"LMGP10050015"
],
"metanetx.chemical":[
"MNXM4232"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15325"
],
"slm":[
"000000650"
]
}
},
{
"id":"inost_p",
"name":"Myo-Inositol",
"compartment":"p",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"inost_p"
]
},
"annotation":{
"bigg.metabolite":[
"inost"
],
"biocyc":[
"META:CPD-8052",
"META:MYO-INOSITOL"
],
"chebi":[
"CHEBI:4200",
"CHEBI:12826",
"CHEBI:17268",
"CHEBI:27372",
"CHEBI:43559",
"CHEBI:25451",
"CHEBI:19183",
"CHEBI:24848",
"CHEBI:10601",
"CHEBI:52772",
"CHEBI:12831"
],
"hmdb":[
"HMDB02256",
"HMDB00211",
"HMDB34220"
],
"inchi_key":[
"CDAISMWEOUEBRE-GPIVLXJGSA-N"
],
"kegg.compound":[
"C00137",
"C19891"
],
"kegg.drug":[
"D08079"
],
"metanetx.chemical":[
"MNXM127"
],
"reactome.compound":[
"426910",
"429130"
],
"sabiork":[
"5010",
"25454"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd21131",
"cpd00121"
]
}
},
{
"id":"murein4px4p4p_p",
"name":"Three disacharide linked murein units (tetrapeptide crosslinked tetrapeptide (A2pm->D-ala), one uncrosslinked tetrapaptide) (middle of chain)",
"compartment":"p",
"charge":-6,
"formula":"C111H169N21O59",
"notes":{
"original_bigg_ids":[
"murein4px4p4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein4px4p4p"
],
"biocyc":[
"META:CPD0-2266"
],
"inchi_key":[
"NPJMJVATSCHTAI-UHFFFAOYSA-F"
],
"metanetx.chemical":[
"MNXM87122"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15507"
]
}
},
{
"id":"5mdru1p_c",
"name":"5-Methylthio-5-deoxy-D-ribulose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O7PS",
"notes":{
"original_bigg_ids":[
"5mdru1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mdru1p"
],
"biocyc":[
"META:CPD-1063"
],
"chebi":[
"CHEBI:20615",
"CHEBI:44141",
"CHEBI:58548",
"CHEBI:2100",
"CHEBI:28096",
"CHEBI:12768"
],
"hmdb":[
"HMDB62647",
"HMDB01299"
],
"inchi_key":[
"CNSJRYUMVMWNMC-RITPCOANSA-L"
],
"kegg.compound":[
"C04582"
],
"metanetx.chemical":[
"MNXM522"
],
"reactome.compound":[
"1237107"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02791"
]
}
},
{
"id":"1tdecg3p_p",
"name":"1-tetradecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C17H33O7P1",
"notes":{
"original_bigg_ids":[
"1tdecg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"1tdecg3p"
],
"biocyc":[
"META:CPD-18379"
],
"chebi":[
"CHEBI:62833",
"CHEBI:72683"
],
"hmdb":[
"HMDB62321"
],
"inchi_key":[
"FAZBDRGXCKPVJU-MRXNPFEDSA-L"
],
"lipidmaps":[
"LMGP10050007"
],
"metanetx.chemical":[
"MNXM3426"
],
"reactome.compound":[
"8878649"
],
"sabiork":[
"26679"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15331"
],
"slm":[
"000000647"
]
}
},
{
"id":"2mecdp_c",
"name":"2-C-methyl-D-erythritol 2,4-cyclodiphosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H10O9P2",
"notes":{
"original_bigg_ids":[
"2mecdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mecdp"
],
"biocyc":[
"META:2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE"
],
"chebi":[
"CHEBI:1029",
"CHEBI:11481",
"CHEBI:58483",
"CHEBI:11482",
"CHEBI:18425"
],
"inchi_key":[
"SFRQRNJMIIUYDI-UHNVWZDZSA-L"
],
"kegg.compound":[
"C11453"
],
"metanetx.chemical":[
"MNXM1168"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08301"
]
}
},
{
"id":"frdp_c",
"name":"Farnesyl diphosphate",
"compartment":"c",
"charge":-3,
"formula":"C15H25O7P2",
"notes":{
"original_bigg_ids":[
"frdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"frdp"
],
"biocyc":[
"META:FARNESYL-PP"
],
"chebi":[
"CHEBI:50277",
"CHEBI:19789",
"CHEBI:24016",
"CHEBI:12874",
"CHEBI:12854",
"CHEBI:10700",
"CHEBI:42496",
"CHEBI:175763",
"CHEBI:11488",
"CHEBI:11491",
"CHEBI:17407",
"CHEBI:14231"
],
"hmdb":[
"HMDB04201",
"HMDB00961"
],
"inchi_key":[
"VWFJDQUYCIWHTN-YFVJMOTDSA-K"
],
"kegg.compound":[
"C00448"
],
"lipidmaps":[
"LMPR0103010002"
],
"metanetx.chemical":[
"MNXM34"
],
"reactome.compound":[
"191385",
"2162257",
"4419987"
],
"sabiork":[
"5095"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00350"
]
}
},
{
"id":"grxrd_c",
"name":"Glutaredoxin (reduced)",
"compartment":"c",
"charge":0,
"formula":"XH2",
"notes":{
"original_bigg_ids":[
"grxrd_c"
]
},
"annotation":{
"bigg.metabolite":[
"grxrd"
],
"metanetx.chemical":[
"MNXM90719"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15481"
]
}
},
{
"id":"1tdec7eg3p_p",
"name":"1-tetradec-7-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C17H31O7P1",
"notes":{
"original_bigg_ids":[
"1tdec7eg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"1tdec7eg3p"
],
"metanetx.chemical":[
"MNXM91053"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15330"
]
}
},
{
"id":"gthox_c",
"name":"Oxidized glutathione",
"compartment":"c",
"charge":-2,
"formula":"C20H30N6O12S2",
"notes":{
"original_bigg_ids":[
"gthox_c"
]
},
"annotation":{
"bigg.metabolite":[
"gthox"
],
"biocyc":[
"META:OXIDIZED-GLUTATHIONE"
],
"chebi":[
"CHEBI:42832",
"CHEBI:14328",
"CHEBI:17858",
"CHEBI:24336",
"CHEBI:7840",
"CHEBI:58297",
"CHEBI:14720"
],
"hmdb":[
"HMDB03337"
],
"inchi_key":[
"YPZRWBKMTBYPTK-BJDJZHNGSA-L"
],
"kegg.compound":[
"C00127"
],
"kegg.drug":[
"D00031"
],
"metanetx.chemical":[
"MNXM151"
],
"reactome.compound":[
"1655882",
"111745",
"3341331"
],
"sabiork":[
"1939"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00111"
]
}
},
{
"id":"melib_p",
"name":"Melibiose C12H22O11",
"compartment":"p",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"melib_p"
]
},
"annotation":{
"bigg.metabolite":[
"melib"
],
"biocyc":[
"META:MELIBIOSE"
],
"chebi":[
"CHEBI:61827"
],
"inchi_key":[
"DLRVVLDZNNYCBX-ZZFZYMBESA-N"
],
"kegg.glycan":[
"G00835"
],
"metanetx.chemical":[
"MNXM8340"
],
"sbo":"SBO:0000247"
}
},
{
"id":"1hdecg3p_p",
"name":"1-hexadecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C19H37O7P1",
"notes":{
"original_bigg_ids":[
"1hdecg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"1hdecg3p"
],
"metanetx.chemical":[
"MNXM90586"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15327"
]
}
},
{
"id":"met__D_p",
"name":"D-Methionine",
"compartment":"p",
"charge":0,
"formula":"C5H10NO2S",
"notes":{
"original_bigg_ids":[
"met_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"met__D"
],
"biocyc":[
"META:CPD-218"
],
"chebi":[
"CHEBI:57932",
"CHEBI:13005",
"CHEBI:44071",
"CHEBI:21065",
"CHEBI:4215",
"CHEBI:16867",
"CHEBI:32638",
"CHEBI:32637"
],
"inchi_key":[
"FFEARJCKVFRZRR-SCSAIBSYSA-N"
],
"kegg.compound":[
"C00855"
],
"metanetx.chemical":[
"MNXM1275"
],
"sabiork":[
"2171"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00637"
]
}
},
{
"id":"grxox_c",
"name":"Glutaredoxin (oxidized)",
"compartment":"c",
"charge":0,
"formula":"X",
"notes":{
"original_bigg_ids":[
"grxox_c"
]
},
"annotation":{
"bigg.metabolite":[
"grxox"
],
"metanetx.chemical":[
"MNXM90831"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15480"
]
}
},
{
"id":"1hdec9eg3p_p",
"name":"1-hexadec-9-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C19H35O7P1",
"notes":{
"original_bigg_ids":[
"1hdec9eg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"1hdec9eg3p"
],
"metanetx.chemical":[
"MNXM91047"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15326"
]
}
},
{
"id":"gsn_c",
"name":"Guanosine",
"compartment":"c",
"charge":0,
"formula":"C10H13N5O5",
"notes":{
"original_bigg_ids":[
"gsn_c"
]
},
"annotation":{
"bigg.metabolite":[
"gsn"
],
"biocyc":[
"META:GUANOSINE"
],
"chebi":[
"CHEBI:14375",
"CHEBI:16750",
"CHEBI:42853",
"CHEBI:24444",
"CHEBI:42847",
"CHEBI:471737",
"CHEBI:42840",
"CHEBI:5564"
],
"hmdb":[
"HMDB00133"
],
"inchi_key":[
"NYHBQMYGNKIUIF-UUOKFMHZSA-N"
],
"kegg.compound":[
"C00387"
],
"metanetx.chemical":[
"MNXM401"
],
"sabiork":[
"1872"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00311"
]
}
},
{
"id":"met__D_c",
"name":"D-Methionine",
"compartment":"c",
"charge":0,
"formula":"C5H10NO2S",
"notes":{
"original_bigg_ids":[
"met_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"met__D"
],
"biocyc":[
"META:CPD-218"
],
"chebi":[
"CHEBI:57932",
"CHEBI:13005",
"CHEBI:44071",
"CHEBI:21065",
"CHEBI:4215",
"CHEBI:16867",
"CHEBI:32638",
"CHEBI:32637"
],
"inchi_key":[
"FFEARJCKVFRZRR-SCSAIBSYSA-N"
],
"kegg.compound":[
"C00855"
],
"metanetx.chemical":[
"MNXM1275"
],
"sabiork":[
"2171"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00637"
]
}
},
{
"id":"1odecg3p_p",
"name":"1-octadecanoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C21H41O7P1",
"notes":{
"original_bigg_ids":[
"1odecg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"1odecg3p"
],
"biocyc":[
"META:CPD0-2113"
],
"chebi":[
"CHEBI:74850",
"CHEBI:74565"
],
"hmdb":[
"HMDB07854"
],
"inchi_key":[
"LAYXSTYJRSVXIH-HXUWFJFHSA-L"
],
"lipidmaps":[
"LMGP10050005"
],
"metanetx.chemical":[
"MNXM32950"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15329"
],
"slm":[
"000000640"
]
}
},
{
"id":"metsox_S__L_c",
"name":"L-Methionine Sulfoxide",
"compartment":"c",
"charge":0,
"formula":"C5H11NO3S",
"notes":{
"original_bigg_ids":[
"metsox_S_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"metsox_S__L"
],
"biocyc":[
"META:L-Methionine-sulfoxides"
],
"chebi":[
"CHEBI:6272",
"CHEBI:17016",
"CHEBI:13142",
"CHEBI:21361"
],
"inchi_key":[
"QEFRNWWLZKMPFJ-YGVKFDHGSA-N"
],
"kegg.compound":[
"C02989"
],
"metanetx.chemical":[
"MNXM2246"
],
"reactome.compound":[
"5676943"
],
"sabiork":[
"2611"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01914",
"cpd15498",
"cpd29319"
]
}
},
{
"id":"gtspmd_c",
"name":"Glutathionylspermidine",
"compartment":"c",
"charge":2,
"formula":"C17H36N6O5S",
"notes":{
"original_bigg_ids":[
"gtspmd_c"
]
},
"annotation":{
"bigg.metabolite":[
"gtspmd"
],
"biocyc":[
"META:GLUTATHIONYLSPERMIDINE"
],
"chebi":[
"CHEBI:16613",
"CHEBI:24341",
"CHEBI:12624",
"CHEBI:57835",
"CHEBI:46146",
"CHEBI:5438",
"CHEBI:14329"
],
"inchi_key":[
"NEDQLXHBVHSKNV-STQMWFEESA-P"
],
"kegg.compound":[
"C05730"
],
"metanetx.chemical":[
"MNXM1329"
],
"sabiork":[
"8098"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03411"
]
}
},
{
"id":"1odec11eg3p_p",
"name":"1-octadec-11-enoyl-sn-glycerol 3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C21H39O7P1",
"notes":{
"original_bigg_ids":[
"1odec11eg3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"1odec11eg3p"
],
"metanetx.chemical":[
"MNXM91049"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15328"
]
}
},
{
"id":"spmd_c",
"name":"Spermidine",
"compartment":"c",
"charge":3,
"formula":"C7H22N3",
"notes":{
"original_bigg_ids":[
"spmd_c"
]
},
"annotation":{
"bigg.metabolite":[
"spmd"
],
"biocyc":[
"META:SPERMIDINE"
],
"chebi":[
"CHEBI:57834",
"CHEBI:15097",
"CHEBI:26732",
"CHEBI:26733",
"CHEBI:9218",
"CHEBI:45647",
"CHEBI:15095",
"CHEBI:16610"
],
"hmdb":[
"HMDB01257"
],
"inchi_key":[
"ATHGHQPFGPMSJY-UHFFFAOYSA-Q"
],
"kegg.compound":[
"C00315"
],
"metanetx.chemical":[
"MNXM124"
],
"reactome.compound":[
"204635",
"141324"
],
"sabiork":[
"3088"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00264"
]
}
},
{
"id":"metsox_R__L_c",
"name":"L-methionine-R-sulfoxide",
"compartment":"c",
"charge":0,
"formula":"C5H11NO3S",
"notes":{
"original_bigg_ids":[
"metsox_R_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"metsox_R__L"
],
"biocyc":[
"META:CPD-8990"
],
"chebi":[
"CHEBI:49032",
"CHEBI:58773"
],
"inchi_key":[
"QEFRNWWLZKMPFJ-ZXPFJRLXSA-N"
],
"kegg.compound":[
"C15998"
],
"metanetx.chemical":[
"MNXM2245"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14720",
"cpd15497"
]
}
},
{
"id":"1agpe120_p",
"name":"1-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0)",
"compartment":"p",
"charge":0,
"formula":"C17H36NO7P1",
"notes":{
"original_bigg_ids":[
"1agpe120_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpe120"
],
"biocyc":[
"META:CPD0-2148"
],
"inchi_key":[
"IZDRGPDUDLWAGR-UHFFFAOYSA-N"
],
"lipidmaps":[
"LMGP02050005"
],
"metanetx.chemical":[
"MNXM32692"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26432"
],
"slm":[
"000030164"
]
}
},
{
"id":"5mthf_c",
"name":"5-Methyltetrahydrofolate",
"compartment":"c",
"charge":-1,
"formula":"C20H24N7O6",
"notes":{
"original_bigg_ids":[
"5mthf_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mthf"
],
"biocyc":[
"META:5-METHYL-THF"
],
"chebi":[
"CHEBI:18608",
"CHEBI:12146",
"CHEBI:136009",
"CHEBI:2097",
"CHEBI:20612",
"CHEBI:15641"
],
"hmdb":[
"HMDB01396"
],
"inchi_key":[
"ZNOVTXRBGFNYRX-STQMWFEESA-L"
],
"kegg.compound":[
"C00440"
],
"kegg.drug":[
"D09353"
],
"metanetx.chemical":[
"MNXM318"
],
"reactome.compound":[
"200709",
"200665"
],
"sabiork":[
"2051"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00345"
]
}
},
{
"id":"metsox_S__L_p",
"name":"L-Methionine Sulfoxide",
"compartment":"p",
"charge":0,
"formula":"C5H11NO3S",
"notes":{
"original_bigg_ids":[
"metsox_S_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"metsox_S__L"
],
"biocyc":[
"META:L-Methionine-sulfoxides"
],
"chebi":[
"CHEBI:6272",
"CHEBI:17016",
"CHEBI:13142",
"CHEBI:21361"
],
"inchi_key":[
"QEFRNWWLZKMPFJ-YGVKFDHGSA-N"
],
"kegg.compound":[
"C02989"
],
"metanetx.chemical":[
"MNXM2246"
],
"reactome.compound":[
"5676943"
],
"sabiork":[
"2611"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01914",
"cpd15498",
"cpd29319"
]
}
},
{
"id":"gdptp_c",
"name":"Guanosine 3'-diphosphate 5'-triphosphate",
"compartment":"c",
"charge":-7,
"formula":"C10H11N5O20P5",
"notes":{
"original_bigg_ids":[
"gdptp_c"
]
},
"annotation":{
"bigg.metabolite":[
"gdptp"
],
"biocyc":[
"META:GDP-TP"
],
"chebi":[
"CHEBI:14382",
"CHEBI:5566",
"CHEBI:24446",
"CHEBI:14378",
"CHEBI:71477",
"CHEBI:60028",
"CHEBI:16690"
],
"hmdb":[
"HMDB60480"
],
"inchi_key":[
"KCPMACXZAITQAX-UUOKFMHZSA-H"
],
"kegg.compound":[
"C04494"
],
"metanetx.chemical":[
"MNXM1561"
],
"sabiork":[
"1817"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02740"
]
}
},
{
"id":"xtp_c",
"name":"XTP",
"compartment":"c",
"charge":-4,
"formula":"C10H11N4O15P3",
"notes":{
"original_bigg_ids":[
"xtp_c"
]
},
"annotation":{
"bigg.metabolite":[
"xtp"
],
"biocyc":[
"META:XTP"
],
"chebi":[
"CHEBI:61314",
"CHEBI:10049",
"CHEBI:59885"
],
"hmdb":[
"HMDB00293"
],
"inchi_key":[
"CAEFEWVYEZABLA-UUOKFMHZSA-J"
],
"kegg.compound":[
"C00700"
],
"metanetx.chemical":[
"MNXM1860"
],
"reactome.compound":[
"2509848"
],
"sabiork":[
"1876"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00530"
]
}
},
{
"id":"1agpe140_p",
"name":"1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0)",
"compartment":"p",
"charge":0,
"formula":"C19H40NO7P1",
"notes":{
"original_bigg_ids":[
"1agpe140_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpe140"
],
"biocyc":[
"META:CPD0-2147"
],
"chebi":[
"CHEBI:84299",
"CHEBI:85215"
],
"hmdb":[
"HMDB11500"
],
"inchi_key":[
"RPXHXZNGZBHSMJ-GOSISDBHSA-N"
],
"lipidmaps":[
"LMGP02050003"
],
"metanetx.chemical":[
"MNXM32693"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26431"
],
"slm":[
"000030177"
]
}
},
{
"id":"gtp_p",
"name":"GTP C10H12N5O14P3",
"compartment":"p",
"charge":-4,
"formula":"C10H12N5O14P3",
"notes":{
"original_bigg_ids":[
"gtp_p"
]
},
"annotation":{
"bigg.metabolite":[
"gtp"
],
"biocyc":[
"META:GTP"
],
"chebi":[
"CHEBI:37565",
"CHEBI:15996",
"CHEBI:13342",
"CHEBI:57600",
"CHEBI:5234",
"CHEBI:42934",
"CHEBI:24451"
],
"hmdb":[
"HMDB01273"
],
"inchi_key":[
"XKMLYUALXHKNFT-UUOKFMHZSA-J"
],
"kegg.compound":[
"C00044"
],
"metanetx.chemical":[
"MNXM51"
],
"reactome.compound":[
"113573",
"29438"
],
"sabiork":[
"1282"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00038"
]
}
},
{
"id":"metsox_R__L_p",
"name":"L-methionine-R-sulfoxide",
"compartment":"p",
"charge":0,
"formula":"C5H11NO3S",
"notes":{
"original_bigg_ids":[
"metsox_R_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"metsox_R__L"
],
"biocyc":[
"META:CPD-8990"
],
"chebi":[
"CHEBI:49032",
"CHEBI:58773"
],
"inchi_key":[
"QEFRNWWLZKMPFJ-ZXPFJRLXSA-N"
],
"kegg.compound":[
"C15998"
],
"metanetx.chemical":[
"MNXM2245"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14720",
"cpd15497"
]
}
},
{
"id":"1agpe141_p",
"name":"1-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1)",
"compartment":"p",
"charge":0,
"formula":"C19H38NO7P1",
"notes":{
"original_bigg_ids":[
"1agpe141_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpe141"
],
"metanetx.chemical":[
"MNXM6599"
],
"sbo":"SBO:0000247"
}
},
{
"id":"trnamet_c",
"name":"TRNA(Met)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnamet_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnamet"
],
"biocyc":[
"META:Elongation-tRNAMet"
],
"chebi":[
"CHEBI:15182",
"CHEBI:10686",
"CHEBI:29173"
],
"kegg.compound":[
"C01647"
],
"metanetx.chemical":[
"MNXM90882"
],
"reactome.compound":[
"5603445",
"5603441",
"379741",
"379742"
],
"sabiork":[
"3849"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11918"
]
}
},
{
"id":"gua_c",
"name":"Guanine",
"compartment":"c",
"charge":0,
"formula":"C5H5N5O",
"notes":{
"original_bigg_ids":[
"gua_c"
]
},
"annotation":{
"bigg.metabolite":[
"gua"
],
"biocyc":[
"META:GUANINE"
],
"chebi":[
"CHEBI:16235",
"CHEBI:14371",
"CHEBI:42948",
"CHEBI:14372",
"CHEBI:24443",
"CHEBI:5563"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/b5208daa-3750-4745-b4ed-179fb9d4fcfd"
],
"hmdb":[
"HMDB00132"
],
"inchi_key":[
"UYTPUPDQBNUYGX-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00242"
],
"metanetx.chemical":[
"MNXM259"
],
"reactome.compound":[
"83956"
],
"sabiork":[
"59"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00207"
]
}
},
{
"id":"1agpe160_p",
"name":"1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0)",
"compartment":"p",
"charge":0,
"formula":"C21H44NO7P1",
"notes":{
"original_bigg_ids":[
"1agpe160_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpe160"
],
"biocyc":[
"META:CPD-8353"
],
"chebi":[
"CHEBI:73134",
"CHEBI:73004"
],
"hmdb":[
"HMDB11503"
],
"inchi_key":[
"YVYMBNSKXOXSKW-HXUWFJFHSA-N"
],
"lipidmaps":[
"LMGP02050002"
],
"metanetx.chemical":[
"MNXM32511"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25195"
],
"slm":[
"000000654"
]
}
},
{
"id":"gua_p",
"name":"Guanine",
"compartment":"p",
"charge":0,
"formula":"C5H5N5O",
"notes":{
"original_bigg_ids":[
"gua_p"
]
},
"annotation":{
"bigg.metabolite":[
"gua"
],
"biocyc":[
"META:GUANINE"
],
"chebi":[
"CHEBI:16235",
"CHEBI:14371",
"CHEBI:42948",
"CHEBI:14372",
"CHEBI:24443",
"CHEBI:5563"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/b5208daa-3750-4745-b4ed-179fb9d4fcfd"
],
"hmdb":[
"HMDB00132"
],
"inchi_key":[
"UYTPUPDQBNUYGX-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00242"
],
"metanetx.chemical":[
"MNXM259"
],
"reactome.compound":[
"83956"
],
"sabiork":[
"59"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00207"
]
}
},
{
"id":"met__L_p",
"name":"L-Methionine",
"compartment":"p",
"charge":0,
"formula":"C5H11NO2S",
"notes":{
"original_bigg_ids":[
"met_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"met__L"
],
"biocyc":[
"META:MET"
],
"chebi":[
"CHEBI:32644",
"CHEBI:32631",
"CHEBI:21360",
"CHEBI:6271",
"CHEBI:14590",
"CHEBI:16811",
"CHEBI:25229",
"CHEBI:32632",
"CHEBI:6829",
"CHEBI:57844",
"CHEBI:32646",
"CHEBI:64558",
"CHEBI:16643",
"CHEBI:13141",
"CHEBI:43990"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/44a61812-39ff-48f9-bf09-8398e8723d5e"
],
"hmdb":[
"HMDB00696",
"HMDB33951"
],
"inchi_key":[
"FFEARJCKVFRZRR-BYPYZUCNSA-N"
],
"kegg.compound":[
"C01733",
"C00073"
],
"kegg.drug":[
"D04984",
"D04983",
"D00019"
],
"metanetx.chemical":[
"MNXM61"
],
"reactome.compound":[
"379705",
"1130765",
"174390"
],
"sabiork":[
"77",
"2315"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00060",
"cpd30746"
]
}
},
{
"id":"mg2_p",
"name":"Magnesium",
"compartment":"p",
"charge":2,
"formula":"Mg",
"notes":{
"original_bigg_ids":[
"mg2_p"
]
},
"annotation":{
"bigg.metabolite":[
"mg2"
],
"biocyc":[
"META:MG+2"
],
"chebi":[
"CHEBI:6635",
"CHEBI:18420",
"CHEBI:13379",
"CHEBI:39127",
"CHEBI:25112",
"CHEBI:49736"
],
"hmdb":[
"HMDB00547"
],
"inchi_key":[
"JLVVSXFLKOJNIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00305"
],
"metanetx.chemical":[
"MNXM653"
],
"reactome.compound":[
"29926",
"114632",
"5336432",
"109496"
],
"sabiork":[
"1327"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00254"
]
}
},
{
"id":"1agpe161_p",
"name":"1-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1)",
"compartment":"p",
"charge":0,
"formula":"C21H42NO7P1",
"notes":{
"original_bigg_ids":[
"1agpe161_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpe161"
],
"metanetx.chemical":[
"MNXM6601"
],
"sbo":"SBO:0000247"
}
},
{
"id":"h2o2_p",
"name":"Hydrogen peroxide",
"compartment":"p",
"charge":0,
"formula":"H2O2",
"notes":{
"original_bigg_ids":[
"h2o2_p"
]
},
"annotation":{
"bigg.metabolite":[
"h2o2"
],
"biocyc":[
"META:HYDROGEN-PEROXIDE"
],
"chebi":[
"CHEBI:29192",
"CHEBI:44785",
"CHEBI:13355",
"CHEBI:13354",
"CHEBI:29370",
"CHEBI:24637",
"CHEBI:44812",
"CHEBI:5586",
"CHEBI:25940",
"CHEBI:44782",
"CHEBI:16240"
],
"hmdb":[
"HMDB03125",
"HMDB06491"
],
"inchi_key":[
"MHAJPDPJQMAIIY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00027"
],
"kegg.drug":[
"D00008"
],
"metanetx.chemical":[
"MNXM22"
],
"reactome.compound":[
"1614617",
"29408",
"351629",
"189481",
"113575"
],
"sabiork":[
"1909"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00025"
]
}
},
{
"id":"1agpe180_p",
"name":"1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0)",
"compartment":"p",
"charge":0,
"formula":"C23H48NO7P1",
"notes":{
"original_bigg_ids":[
"1agpe180_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpe180"
],
"biocyc":[
"META:CPD0-2152"
],
"chebi":[
"CHEBI:75036",
"CHEBI:83047"
],
"hmdb":[
"HMDB11130"
],
"inchi_key":[
"BBYWOYAFBUOUFP-JOCHJYFZSA-N"
],
"kegg.compound":[
"C21484"
],
"lipidmaps":[
"LMGP02050001"
],
"metanetx.chemical":[
"MNXM722840"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26433"
],
"slm":[
"000030172"
]
}
},
{
"id":"h2s_p",
"name":"Hydrogen sulfide",
"compartment":"p",
"charge":0,
"formula":"H2S",
"notes":{
"original_bigg_ids":[
"h2s_p"
]
},
"annotation":{
"bigg.metabolite":[
"h2s"
],
"biocyc":[
"META:CPD-846",
"META:CPD-7046",
"META:HS"
],
"chebi":[
"CHEBI:14414",
"CHEBI:43058",
"CHEBI:5787",
"CHEBI:13356",
"CHEBI:30488",
"CHEBI:24639",
"CHEBI:29919",
"CHEBI:16136",
"CHEBI:15138",
"CHEBI:45489"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6fca0a43-b0f0-41dd-a454-c7880342d6be",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/83aab241-d065-45ef-a799-98fdad5bcf04",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/0b237b94-a6df-4792-8866-246b2230eef0",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/6715c2d9-35cb-48df-aa0b-611368e2fb0a"
],
"hmdb":[
"HMDB00598",
"HMDB03276"
],
"inchi_key":[
"RWSOTUBLDIXVET-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00283"
],
"metanetx.chemical":[
"MNXM89582"
],
"reactome.compound":[
"1663154",
"1614532",
"1655881"
],
"sabiork":[
"2007"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd24697",
"cpd00239"
]
}
},
{
"id":"mi1p__D_c",
"name":"1D-myo-Inositol 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"mi1p_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"mi1p__D"
],
"biocyc":[
"META:D-MYO-INOSITOL-1-MONOPHOSPHATE"
],
"chebi":[
"CHEBI:58433",
"CHEBI:18297",
"CHEBI:11354",
"CHEBI:12895",
"CHEBI:43432",
"CHEBI:11220",
"CHEBI:818",
"CHEBI:19207",
"CHEBI:12828"
],
"inchi_key":[
"INAPMGSXUVUWAF-UOTPTPDRSA-L"
],
"kegg.compound":[
"C01177"
],
"metanetx.chemical":[
"MNXM646"
],
"reactome.compound":[
"870330"
],
"sabiork":[
"5422"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00867"
]
}
},
{
"id":"1agpe181_p",
"name":"1-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1)",
"compartment":"p",
"charge":0,
"formula":"C23H46NO7P1",
"notes":{
"original_bigg_ids":[
"1agpe181_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpe181"
],
"metanetx.chemical":[
"MNXM9584"
],
"sbo":"SBO:0000247"
}
},
{
"id":"minohp_p",
"name":"Myo-Inositol hexakisphosphate",
"compartment":"p",
"charge":-12,
"formula":"C6H6O24P6",
"notes":{
"original_bigg_ids":[
"minohp_p"
]
},
"annotation":{
"bigg.metabolite":[
"minohp"
],
"biocyc":[
"META:MI-HEXAKISPHOSPHATE"
],
"chebi":[
"CHEBI:19200",
"CHEBI:17401",
"CHEBI:11366",
"CHEBI:10603",
"CHEBI:12829",
"CHEBI:58130",
"CHEBI:12832"
],
"hmdb":[
"HMDB03502",
"HMDB60271"
],
"inchi_key":[
"IMQLKJBTEOYOSI-GPIVLXJGSA-B"
],
"kegg.compound":[
"C01204"
],
"metanetx.chemical":[
"MNXM491"
],
"reactome.compound":[
"2024018",
"1629770",
"2023929"
],
"sabiork":[
"5443"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00885"
]
}
},
{
"id":"murein3p3p_p",
"name":"Two linked disacharide tripeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C68H104N12O38",
"notes":{
"original_bigg_ids":[
"murein3p3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein3p3p"
],
"inchi_key":[
"QKZNHGKXDALVQW-UHFFFAOYSA-I"
],
"metanetx.chemical":[
"MNXM88348"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15501"
]
}
},
{
"id":"h2_p",
"name":"Hydrogen",
"compartment":"p",
"charge":0,
"formula":"H2",
"notes":{
"original_bigg_ids":[
"h2_p"
]
},
"annotation":{
"bigg.metabolite":[
"h2"
],
"biocyc":[
"META:HYDROGEN-MOLECULE"
],
"chebi":[
"CHEBI:18276",
"CHEBI:29298",
"CHEBI:29299",
"CHEBI:13350",
"CHEBI:29294",
"CHEBI:25363",
"CHEBI:5785"
],
"hmdb":[
"HMDB01362"
],
"inchi_key":[
"UFHFLCQGNIYNRP-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00282"
],
"metanetx.chemical":[
"MNXM195"
],
"reactome.compound":[
"113555"
],
"sabiork":[
"5030"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11640"
]
}
},
{
"id":"1agpg120_p",
"name":"1-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0)",
"compartment":"p",
"charge":-1,
"formula":"C18H36O9P1",
"notes":{
"original_bigg_ids":[
"1agpg120_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpg120"
],
"biocyc":[
"META:CPD0-2144"
],
"inchi_key":[
"IACXMECMZISNLR-UHFFFAOYSA-M"
],
"lipidmaps":[
"LMGP04050011"
],
"metanetx.chemical":[
"MNXM32695"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26430"
],
"slm":[
"000043110"
]
}
},
{
"id":"aacoa_c",
"name":"Acetoacetyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C25H36N7O18P3S",
"notes":{
"original_bigg_ids":[
"aacoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"aacoa"
],
"biocyc":[
"META:ACETOACETYL-COA"
],
"chebi":[
"CHEBI:22173",
"CHEBI:15345",
"CHEBI:2392",
"CHEBI:13706",
"CHEBI:11756",
"CHEBI:41333",
"CHEBI:57286"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e8a0c5c5-e9b1-4f85-94c1-d3d04866d6c9"
],
"hmdb":[
"HMDB01484",
"HMDB11665"
],
"inchi_key":[
"OJFDKHTZOUZBOS-CITAKDKDSA-J"
],
"kegg.compound":[
"C00332"
],
"lipidmaps":[
"LMFA07050030"
],
"metanetx.chemical":[
"MNXM133"
],
"reactome.compound":[
"191293",
"73871"
],
"sabiork":[
"2019"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00279"
],
"slm":[
"000000298"
]
}
},
{
"id":"murein3px3p_p",
"name":"Two disacharide linked murein units, tripeptide crosslinked tripeptide (A2pm->A2pm) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C68H102N12O37",
"notes":{
"original_bigg_ids":[
"murein3px3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein3px3p"
],
"biocyc":[
"META:CPD0-2277"
],
"inchi_key":[
"IYFHCENFVZTZLO-UHFFFAOYSA-G"
],
"metanetx.chemical":[
"MNXM88342"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15502"
]
}
},
{
"id":"1agpg140_p",
"name":"1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0)",
"compartment":"p",
"charge":-1,
"formula":"C20H40O9P1",
"notes":{
"original_bigg_ids":[
"1agpg140_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpg140"
],
"biocyc":[
"META:CPD0-2143"
],
"chebi":[
"CHEBI:72826",
"CHEBI:73092"
],
"inchi_key":[
"LUTDZDAPSDZVAL-RBUKOAKNSA-M"
],
"lipidmaps":[
"LMGP04050012"
],
"metanetx.chemical":[
"MNXM6603"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26429"
],
"slm":[
"000000844"
]
}
},
{
"id":"mmcoa__S_c",
"name":"(S)-Methylmalonyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C25H35N7O19P3S",
"notes":{
"original_bigg_ids":[
"mmcoa_S_c"
]
},
"annotation":{
"bigg.metabolite":[
"mmcoa__S"
],
"biocyc":[
"META:D-METHYL-MALONYL-COA"
],
"chebi":[
"CHEBI:43874",
"CHEBI:18742",
"CHEBI:57327",
"CHEBI:384",
"CHEBI:11038",
"CHEBI:15466",
"CHEBI:11068"
],
"hmdb":[
"HMDB02310"
],
"inchi_key":[
"MZFOKIKEPGUZEN-IBNUZSNCSA-I"
],
"kegg.compound":[
"C00683"
],
"lipidmaps":[
"LMFA07050164"
],
"metanetx.chemical":[
"MNXM89955"
],
"reactome.compound":[
"71019"
],
"sabiork":[
"5180"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29701",
"cpd00519"
]
}
},
{
"id":"3ohcoa_c",
"name":"3-Oxohexanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C27H40N7O18P3S",
"notes":{
"original_bigg_ids":[
"3ohcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ohcoa"
],
"biocyc":[
"META:K-HEXANOYL-COA"
],
"chebi":[
"CHEBI:27648",
"CHEBI:1641",
"CHEBI:62418",
"CHEBI:20172"
],
"hmdb":[
"HMDB62372",
"HMDB03943"
],
"inchi_key":[
"NFOYYXQAVVYWKV-HDRQGHTBSA-J"
],
"kegg.compound":[
"C05269"
],
"lipidmaps":[
"LMFA07050018",
"LMFA07050242"
],
"metanetx.chemical":[
"MNXM717"
],
"reactome.compound":[
"77320"
],
"sabiork":[
"2746"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03123"
],
"slm":[
"000001031"
]
}
},
{
"id":"1agpg141_p",
"name":"1-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1)",
"compartment":"p",
"charge":-1,
"formula":"C20H38O9P1",
"notes":{
"original_bigg_ids":[
"1agpg141_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpg141"
],
"metanetx.chemical":[
"MNXM6604"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3oocoa_c",
"name":"3-Oxooctanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C29H44N7O18P3S",
"notes":{
"original_bigg_ids":[
"3oocoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3oocoa"
],
"biocyc":[
"META:CPD0-2106"
],
"chebi":[
"CHEBI:20175",
"CHEBI:28264",
"CHEBI:62619",
"CHEBI:1645"
],
"inchi_key":[
"WPIVBCGRGVNDDT-CECATXLMSA-J"
],
"kegg.compound":[
"C05267"
],
"lipidmaps":[
"LMFA07050249"
],
"metanetx.chemical":[
"MNXM706"
],
"reactome.compound":[
"77328"
],
"sabiork":[
"2744"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03121"
],
"slm":[
"000001026"
]
}
},
{
"id":"1agpg160_p",
"name":"1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0)",
"compartment":"p",
"charge":-1,
"formula":"C22H44O9P1",
"notes":{
"original_bigg_ids":[
"1agpg160_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpg160"
],
"biocyc":[
"META:CPD0-2162"
],
"chebi":[
"CHEBI:72825",
"CHEBI:73093",
"CHEBI:75158",
"CHEBI:75376"
],
"inchi_key":[
"BVJSKAUUFXBDOB-LEWJYISDSA-M"
],
"lipidmaps":[
"LMGP04050008"
],
"metanetx.chemical":[
"MNXM6605"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26434"
],
"slm":[
"000000686"
]
}
},
{
"id":"3odcoa_c",
"name":"3-Oxodecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C31H48N7O18P3S",
"notes":{
"original_bigg_ids":[
"3odcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3odcoa"
],
"biocyc":[
"META:CPD0-2123"
],
"chebi":[
"CHEBI:1633",
"CHEBI:28528",
"CHEBI:20166",
"CHEBI:62548"
],
"hmdb":[
"HMDB03939",
"HMDB06349"
],
"inchi_key":[
"AZCVXMAPLHSIKY-HSJNEKGZSA-J"
],
"kegg.compound":[
"C05265"
],
"lipidmaps":[
"LMFA07050239"
],
"metanetx.chemical":[
"MNXM677"
],
"reactome.compound":[
"77339"
],
"sabiork":[
"21032",
"2742"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03119"
],
"slm":[
"000001028"
]
}
},
{
"id":"3oddcoa_c",
"name":"3-Oxododecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C33H52N7O18P3S",
"notes":{
"original_bigg_ids":[
"3oddcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3oddcoa"
],
"biocyc":[
"META:CPD0-2105"
],
"chebi":[
"CHEBI:1636",
"CHEBI:20169",
"CHEBI:62615",
"CHEBI:27868"
],
"hmdb":[
"HMDB62368",
"HMDB06350",
"HMDB03937"
],
"inchi_key":[
"HQANBZHVWIDNQZ-GMHMEAMDSA-J"
],
"kegg.compound":[
"C05263"
],
"lipidmaps":[
"LMFA07050013",
"LMFA07050247"
],
"metanetx.chemical":[
"MNXM705"
],
"reactome.compound":[
"77253"
],
"sabiork":[
"2740"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03117"
],
"slm":[
"000001024"
]
}
},
{
"id":"mmcoa__R_c",
"name":"(R)-Methylmalonyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C25H35N7O19P3S",
"notes":{
"original_bigg_ids":[
"mmcoa_R_c"
]
},
"annotation":{
"bigg.metabolite":[
"mmcoa__R"
],
"biocyc":[
"META:METHYL-MALONYL-COA"
],
"chebi":[
"CHEBI:57326",
"CHEBI:15465",
"CHEBI:313",
"CHEBI:18654",
"CHEBI:10976"
],
"hmdb":[
"HMDB02255"
],
"inchi_key":[
"MZFOKIKEPGUZEN-AGCMQPJKSA-I"
],
"kegg.compound":[
"C01213"
],
"lipidmaps":[
"LMFA07050152"
],
"metanetx.chemical":[
"MNXM608"
],
"reactome.compound":[
"71009"
],
"sabiork":[
"2266"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29702",
"cpd00891"
]
}
},
{
"id":"1agpg161_p",
"name":"1-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1)",
"compartment":"p",
"charge":-1,
"formula":"C22H42O9P1",
"notes":{
"original_bigg_ids":[
"1agpg161_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpg161"
],
"metanetx.chemical":[
"MNXM6606"
],
"sbo":"SBO:0000247"
}
},
{
"id":"mmet_p",
"name":"S-Methyl-L-methionine",
"compartment":"p",
"charge":1,
"formula":"C6H14NO2S",
"notes":{
"original_bigg_ids":[
"mmet_p"
]
},
"annotation":{
"bigg.metabolite":[
"mmet"
],
"biocyc":[
"META:CPD-397"
],
"chebi":[
"CHEBI:17728",
"CHEBI:58252",
"CHEBI:22057",
"CHEBI:12772",
"CHEBI:67050",
"CHEBI:8965"
],
"inchi_key":[
"YDBYJHTYSHBBAU-YFKPBYRVSA-O"
],
"kegg.compound":[
"C03172"
],
"metanetx.chemical":[
"MNXM1119"
],
"reactome.compound":[
"4789070"
],
"sabiork":[
"2689"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02027"
]
}
},
{
"id":"3otdcoa_c",
"name":"3-Oxotetradecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C35H56N7O18P3S",
"notes":{
"original_bigg_ids":[
"3otdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3otdcoa"
],
"biocyc":[
"META:CPD-10284"
],
"chebi":[
"CHEBI:62543",
"CHEBI:1654",
"CHEBI:20183",
"CHEBI:28726"
],
"hmdb":[
"HMDB03935",
"HMDB06527"
],
"inchi_key":[
"IQNFBGHLIVBNOU-QSGBVPJFSA-J"
],
"kegg.compound":[
"C05261"
],
"lipidmaps":[
"LMFA07050256"
],
"metanetx.chemical":[
"MNXM707"
],
"reactome.compound":[
"77269"
],
"sabiork":[
"2738"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12689"
],
"slm":[
"000001022"
]
}
},
{
"id":"1agpg180_p",
"name":"1-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0)",
"compartment":"p",
"charge":-1,
"formula":"C24H48O9P1",
"notes":{
"original_bigg_ids":[
"1agpg180_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpg180"
],
"biocyc":[
"META:CPD0-2140"
],
"chebi":[
"CHEBI:73091",
"CHEBI:72827"
],
"hmdb":[
"HMDB61697"
],
"inchi_key":[
"HFJVKBVEKQHVTO-XZOQPEGZSA-M"
],
"lipidmaps":[
"LMGP04050009"
],
"metanetx.chemical":[
"MNXM6607"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26428"
],
"slm":[
"000000689"
]
}
},
{
"id":"3ohdcoa_c",
"name":"3-Oxohexadecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C37H60N7O18P3S",
"notes":{
"original_bigg_ids":[
"3ohdcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ohdcoa"
],
"biocyc":[
"META:3-OXOPALMITOYL-COA"
],
"chebi":[
"CHEBI:1647",
"CHEBI:20176",
"CHEBI:57349",
"CHEBI:11875",
"CHEBI:15491"
],
"hmdb":[
"HMDB06402"
],
"inchi_key":[
"NQMPLXPCRJOSHL-BBECNAHFSA-J"
],
"kegg.compound":[
"C05259"
],
"lipidmaps":[
"LMFA07050250"
],
"metanetx.chemical":[
"MNXM738"
],
"reactome.compound":[
"77302"
],
"sabiork":[
"2736"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03114"
],
"slm":[
"000000869"
]
}
},
{
"id":"mn2_p",
"name":"Manganese",
"compartment":"p",
"charge":2,
"formula":"Mn",
"notes":{
"original_bigg_ids":[
"mn2_p"
]
},
"annotation":{
"bigg.metabolite":[
"mn2"
],
"biocyc":[
"META:MN+2"
],
"chebi":[
"CHEBI:21435",
"CHEBI:25156",
"CHEBI:29035",
"CHEBI:49749"
],
"hmdb":[
"HMDB01333"
],
"inchi_key":[
"WAEMQWOKJMHJLA-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19610"
],
"metanetx.chemical":[
"MNXM2255"
],
"reactome.compound":[
"29418",
"1981162"
],
"sabiork":[
"1279"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20863",
"cpd00030"
]
}
},
{
"id":"1agpg181_p",
"name":"1-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1)",
"compartment":"p",
"charge":-1,
"formula":"C24H46O9P1",
"notes":{
"original_bigg_ids":[
"1agpg181_p"
]
},
"annotation":{
"bigg.metabolite":[
"1agpg181"
],
"biocyc":[
"META:CPD-8365"
],
"chebi":[
"CHEBI:72828",
"CHEBI:72952"
],
"inchi_key":[
"FQQQKGAFQIIGLQ-SNZQZGEVSA-M"
],
"lipidmaps":[
"LMGP04050006"
],
"metanetx.chemical":[
"MNXM73868"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd25202"
],
"slm":[
"000000847"
]
}
},
{
"id":"mnl_p",
"name":"D-Mannitol",
"compartment":"p",
"charge":0,
"formula":"C6H14O6",
"notes":{
"original_bigg_ids":[
"mnl_p"
]
},
"annotation":{
"bigg.metabolite":[
"mnl"
],
"biocyc":[
"META:MANNITOL"
],
"chebi":[
"CHEBI:29864",
"CHEBI:6686",
"CHEBI:44192",
"CHEBI:21050",
"CHEBI:25163",
"CHEBI:130180",
"CHEBI:14574",
"CHEBI:12996",
"CHEBI:16899"
],
"hmdb":[
"HMDB00765",
"HMDB01363"
],
"inchi_key":[
"FBPFZTCFMRRESA-KVTDHHQDSA-N"
],
"kegg.compound":[
"C00392"
],
"kegg.drug":[
"D00062"
],
"metanetx.chemical":[
"MNXM615"
],
"sabiork":[
"2037",
"3932"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00314"
]
}
},
{
"id":"3ohodcoa_c",
"name":"3-Oxooctadecanoyl-CoA",
"compartment":"c",
"charge":-4,
"formula":"C39H64N7O18P3S",
"notes":{
"original_bigg_ids":[
"3oodcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ohodcoa"
],
"biocyc":[
"META:CPD-10260"
],
"chebi":[
"CHEBI:50571",
"CHEBI:71407"
],
"hmdb":[
"HMDB06498"
],
"inchi_key":[
"LGOGWHDPDVAUNY-LFZQUHGESA-J"
],
"kegg.compound":[
"C16216"
],
"lipidmaps":[
"LMFA07050248"
],
"metanetx.chemical":[
"MNXM513"
],
"reactome.compound":[
"548812"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14935"
],
"slm":[
"000000487"
]
}
},
{
"id":"apg120_c",
"name":"Acyl phosphatidylglycerol (n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C42H80O11P",
"notes":{
"original_bigg_ids":[
"apg120_c"
]
},
"annotation":{
"bigg.metabolite":[
"apg120"
],
"biocyc":[
"META:CPD0-2194"
],
"inchi_key":[
"AJCVDIXUOBZCPE-ZESVVUHVSA-M"
],
"metanetx.chemical":[
"MNXM40226"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26441"
]
}
},
{
"id":"3ophb_c",
"name":"3-Octaprenyl-4-hydroxybenzoate",
"compartment":"c",
"charge":-1,
"formula":"C47H69O3",
"notes":{
"original_bigg_ids":[
"3ophb_c"
]
},
"annotation":{
"bigg.metabolite":[
"3ophb"
],
"biocyc":[
"META:3-OCTAPRENYL-4-HYDROXYBENZOATE"
],
"chebi":[
"CHEBI:1617",
"CHEBI:50116"
],
"inchi_key":[
"UTIBHEBNILDQKX-LQOKPSQISA-M"
],
"kegg.compound":[
"C05809"
],
"metanetx.chemical":[
"MNXM2195"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03443"
]
}
},
{
"id":"lipidA_c",
"name":"2,3,2'3'-Tetrakis(beta-hydroxymyristoyl)-D-glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate",
"compartment":"c",
"charge":-4,
"formula":"C68H126N2O23P2",
"notes":{
"original_bigg_ids":[
"lipidA_c"
]
},
"annotation":{
"bigg.metabolite":[
"lipidA"
],
"biocyc":[
"META:LIPID-IV-A"
],
"chebi":[
"CHEBI:19294",
"CHEBI:11407",
"CHEBI:58603",
"CHEBI:19292",
"CHEBI:29056",
"CHEBI:863",
"CHEBI:28165"
],
"inchi_key":[
"KVJWZTLXIROHIL-QDORLFPLSA-J"
],
"kegg.compound":[
"C04919"
],
"lipidmaps":[
"LMSL01040001"
],
"metanetx.chemical":[
"MNXM1754"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02993"
]
}
},
{
"id":"apg140_c",
"name":"Acyl phosphatidylglycerol (n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C48H92O11P",
"notes":{
"original_bigg_ids":[
"apg140_c"
]
},
"annotation":{
"bigg.metabolite":[
"apg140"
],
"biocyc":[
"META:CPD0-2192"
],
"inchi_key":[
"HLSZVIULNVUBQI-YWPUXERESA-M"
],
"metanetx.chemical":[
"MNXM40227"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26440"
]
}
},
{
"id":"kdolipid4_c",
"name":"KDO-lipid IV(A)",
"compartment":"c",
"charge":-5,
"formula":"C76H137N2O30P2",
"notes":{
"original_bigg_ids":[
"kdolipid4_c"
]
},
"annotation":{
"bigg.metabolite":[
"kdolipid4"
],
"biocyc":[
"META:KDO-LIPID-IVA"
],
"chebi":[
"CHEBI:20009",
"CHEBI:27439",
"CHEBI:1496",
"CHEBI:60364"
],
"inchi_key":[
"GPNCBCJEDRRCDW-ACUQGRCXSA-I"
],
"kegg.compound":[
"C06024"
],
"kegg.glycan":[
"G11161"
],
"metanetx.chemical":[
"MNXM1206"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03585"
]
}
},
{
"id":"3hcinnm_p",
"name":"3-hydroxycinnamic acid",
"compartment":"p",
"charge":-1,
"formula":"C9H7O3",
"notes":{
"original_bigg_ids":[
"3hcinnm_p"
]
},
"annotation":{
"bigg.metabolite":[
"3hcinnm"
],
"biocyc":[
"META:CPD-10797"
],
"chebi":[
"CHEBI:47925",
"CHEBI:32357",
"CHEBI:47927",
"CHEBI:47928"
],
"hmdb":[
"HMDB62774",
"HMDB01713"
],
"inchi_key":[
"KKSDGJDHHZEWEP-SNAWJCMRSA-M"
],
"kegg.compound":[
"C12621"
],
"metanetx.chemical":[
"MNXM1799"
],
"sabiork":[
"27751",
"14652"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd09252"
]
}
},
{
"id":"apg141_c",
"name":"Acyl phosphatidylglycerol (n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C48H86O11P",
"notes":{
"original_bigg_ids":[
"apg141_c"
]
},
"annotation":{
"bigg.metabolite":[
"apg141"
],
"metanetx.chemical":[
"MNXM7019"
],
"sbo":"SBO:0000247"
}
},
{
"id":"hemeO_c",
"name":"Heme O C49H56FeN4O5",
"compartment":"c",
"charge":-2,
"formula":"C49H56FeN4O5",
"notes":{
"original_bigg_ids":[
"hemeO_c"
]
},
"annotation":{
"bigg.metabolite":[
"hemeO"
],
"biocyc":[
"META:CPD-17063",
"META:HEME_O"
],
"chebi":[
"CHEBI:24480",
"CHEBI:61719",
"CHEBI:36301",
"CHEBI:60530"
],
"hmdb":[
"HMDB01162"
],
"inchi_key":[
"FISPASSVCDRERW-ARQJTVBPSA-J"
],
"kegg.compound":[
"C15672"
],
"metanetx.chemical":[
"MNXM1278"
],
"reactome.compound":[
"2995328"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11313"
]
}
},
{
"id":"kphphhlipa_c",
"name":"Kdo-phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-11,
"formula":"C139H241N2O70P4",
"notes":{
"original_bigg_ids":[
"kphphhlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"kphphhlipa"
],
"biocyc":[
"META:CPD0-2257"
],
"inchi_key":[
"HKWVBDGTKAFRJF-UHFFFAOYSA-C"
],
"metanetx.chemical":[
"MNXM58984"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15492"
]
}
},
{
"id":"apg160_c",
"name":"Acyl phosphatidylglycerol (n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C54H104O11P",
"notes":{
"original_bigg_ids":[
"apg160_c"
]
},
"annotation":{
"bigg.metabolite":[
"apg160"
],
"biocyc":[
"META:CPD0-2197"
],
"inchi_key":[
"BSAFHIMUDGXOPA-OKPYTHRESA-M"
],
"metanetx.chemical":[
"MNXM40228"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26443"
]
}
},
{
"id":"mobd_p",
"name":"Molybdate",
"compartment":"p",
"charge":-2,
"formula":"MoO4",
"notes":{
"original_bigg_ids":[
"mobd_p"
]
},
"annotation":{
"bigg.metabolite":[
"mobd"
],
"biocyc":[
"META:CPD-3"
],
"chebi":[
"CHEBI:36263",
"CHEBI:25368",
"CHEBI:36264",
"CHEBI:25371",
"CHEBI:6967"
],
"hmdb":[
"HMDB12260"
],
"inchi_key":[
"MEFBJEMVZONFCJ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C06232"
],
"metanetx.chemical":[
"MNXM1026"
],
"reactome.compound":[
"947561"
],
"sabiork":[
"8470"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11574"
]
}
},
{
"id":"hhlipa_c",
"name":"Heptosyl-heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-6,
"formula":"C124H220N2O51P2",
"notes":{
"original_bigg_ids":[
"hhlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hhlipa"
],
"biocyc":[
"META:CPD0-930"
],
"chebi":[
"CHEBI:61507",
"CHEBI:61523"
],
"inchi_key":[
"HHPCMWTVGVTYIC-CFEULOSXSA-H"
],
"metanetx.chemical":[
"MNXM2582"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15484"
]
}
},
{
"id":"apg161_c",
"name":"Acyl phosphatidylglycerol (n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C54H98O11P",
"notes":{
"original_bigg_ids":[
"apg161_c"
]
},
"annotation":{
"bigg.metabolite":[
"apg161"
],
"metanetx.chemical":[
"MNXM7021"
],
"sbo":"SBO:0000247"
}
},
{
"id":"phhlipa_c",
"name":"Phospho-heptosyl-heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-8,
"formula":"C124H219N2O54P3",
"notes":{
"original_bigg_ids":[
"phhlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"phhlipa"
],
"biocyc":[
"META:CPD0-2240"
],
"inchi_key":[
"XNYUHCDJIRFEJF-LIOVHSHWSA-G"
],
"metanetx.chemical":[
"MNXM75132"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15549"
]
}
},
{
"id":"2dhp_c",
"name":"2-Dehydropantoate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O4",
"notes":{
"original_bigg_ids":[
"2dhp_c"
]
},
"annotation":{
"bigg.metabolite":[
"2dhp"
],
"biocyc":[
"META:2-DEHYDROPANTOATE"
],
"chebi":[
"CHEBI:1071",
"CHEBI:11561",
"CHEBI:19545",
"CHEBI:17094"
],
"inchi_key":[
"PKVVTUWHANFMQC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00966"
],
"metanetx.chemical":[
"MNXM959"
],
"sabiork":[
"5342"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00712"
]
}
},
{
"id":"apg180_c",
"name":"Acyl phosphatidylglycerol (n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C60H116O11P",
"notes":{
"original_bigg_ids":[
"apg180_c"
]
},
"annotation":{
"bigg.metabolite":[
"apg180"
],
"biocyc":[
"META:CPD0-2195"
],
"inchi_key":[
"WCMVNCVROQLVSH-JBQXKKLXSA-M"
],
"metanetx.chemical":[
"MNXM40229"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26442"
]
}
},
{
"id":"uaagmda_c",
"name":"Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-ala-D-glu-meso-2,6-diaminopimeloyl-D-ala-D-ala",
"compartment":"c",
"charge":-4,
"formula":"C95H152N8O28P2",
"notes":{
"original_bigg_ids":[
"uaagmda_c"
]
},
"annotation":{
"bigg.metabolite":[
"uaagmda"
],
"biocyc":[
"META:C6"
],
"chebi":[
"CHEBI:28138",
"CHEBI:61388",
"CHEBI:9870",
"CHEBI:27200"
],
"inchi_key":[
"OXJNZXDFVLDLEI-MBCYCBSHSA-J"
],
"kegg.compound":[
"C05898"
],
"kegg.glycan":[
"G10555"
],
"metanetx.chemical":[
"MNXM722781"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03495"
]
}
},
{
"id":"hphhlipa_c",
"name":"Heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-8,
"formula":"C131H231N2O60P3",
"notes":{
"original_bigg_ids":[
"hphhlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hphhlipa"
],
"biocyc":[
"META:CPD0-2238"
],
"inchi_key":[
"OCKKDDJUVZAABC-XSAOWLIJSA-G"
],
"metanetx.chemical":[
"MNXM56168"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15488"
]
}
},
{
"id":"phphhlipa_c",
"name":"Phospho-heptosyl-phospho-heptosyl-heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-10,
"formula":"C131H230N2O63P4",
"notes":{
"original_bigg_ids":[
"phphhlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"phphhlipa"
],
"biocyc":[
"META:CPD0-2239"
],
"inchi_key":[
"MVYTXVAKEAWEGM-WMKPBWIYSA-D"
],
"metanetx.chemical":[
"MNXM75133"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15550"
]
}
},
{
"id":"mso3_p",
"name":"Methanesulfonate",
"compartment":"p",
"charge":-1,
"formula":"CH3O3S",
"notes":{
"original_bigg_ids":[
"mso3_p"
]
},
"annotation":{
"bigg.metabolite":[
"mso3"
],
"biocyc":[
"META:CPD-3746"
],
"chebi":[
"CHEBI:6813",
"CHEBI:27376",
"CHEBI:25224"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/08e4702f-d7fe-43da-9a21-5771459eab73"
],
"inchi_key":[
"AFVFQIVMOAPDHO-UHFFFAOYSA-M"
],
"kegg.compound":[
"C11145"
],
"metanetx.chemical":[
"MNXM1485"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08023"
]
}
},
{
"id":"apg181_c",
"name":"Acyl phosphatidylglycerol (n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C60H110O11P",
"notes":{
"original_bigg_ids":[
"apg181_c"
]
},
"annotation":{
"bigg.metabolite":[
"apg181"
],
"metanetx.chemical":[
"MNXM7023"
],
"sbo":"SBO:0000247"
}
},
{
"id":"5mtr_c",
"name":"5-Methylthio-D-ribose",
"compartment":"c",
"charge":0,
"formula":"C6H12O4S",
"notes":{
"original_bigg_ids":[
"5mtr_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mtr"
],
"biocyc":[
"META:CPD-560"
],
"chebi":[
"CHEBI:16895",
"CHEBI:2101",
"CHEBI:78440",
"CHEBI:22007",
"CHEBI:57941",
"CHEBI:12148"
],
"inchi_key":[
"ACWASDPGAVYCNI-JKUQZMGJSA-N"
],
"kegg.compound":[
"C03089"
],
"metanetx.chemical":[
"MNXM1592"
],
"sabiork":[
"1638"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01981"
]
}
},
{
"id":"5mta_c",
"name":"5-Methylthioadenosine",
"compartment":"c",
"charge":0,
"formula":"C11H15N5O3S",
"notes":{
"original_bigg_ids":[
"5mta_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mta"
],
"biocyc":[
"META:5-METHYLTHIOADENOSINE"
],
"chebi":[
"CHEBI:1966",
"CHEBI:18175",
"CHEBI:12064",
"CHEBI:14605",
"CHEBI:20494",
"CHEBI:12055",
"CHEBI:20491",
"CHEBI:17509",
"CHEBI:44181",
"CHEBI:1986",
"CHEBI:12771"
],
"hmdb":[
"HMDB01173"
],
"inchi_key":[
"WUUGFSXJNOTRMR-IOSLPCCCSA-N"
],
"kegg.compound":[
"C00170"
],
"metanetx.chemical":[
"MNXM150"
],
"reactome.compound":[
"5279412",
"353106"
],
"sabiork":[
"1960"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00147"
]
}
},
{
"id":"hlipa_c",
"name":"Heptosyl-kdo2-lipidA",
"compartment":"c",
"charge":-6,
"formula":"C117H208N2O45P2",
"notes":{
"original_bigg_ids":[
"hlipa_c"
]
},
"annotation":{
"bigg.metabolite":[
"hlipa"
],
"biocyc":[
"META:CPD0-929"
],
"chebi":[
"CHEBI:61502",
"CHEBI:61528"
],
"inchi_key":[
"HPDZKCJEWNZSML-YOZKHJKSSA-H"
],
"metanetx.chemical":[
"MNXM2680"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15485"
]
}
},
{
"id":"4mhetz_c",
"name":"4-Methyl-5-(2-hydroxyethyl)-thiazole",
"compartment":"c",
"charge":0,
"formula":"C6H9NOS",
"notes":{
"original_bigg_ids":[
"4mhetz_c"
]
},
"annotation":{
"bigg.metabolite":[
"4mhetz"
],
"biocyc":[
"META:THZ"
],
"chebi":[
"CHEBI:46320",
"CHEBI:12021",
"CHEBI:17957",
"CHEBI:12086",
"CHEBI:20522",
"CHEBI:12022",
"CHEBI:2011"
],
"hmdb":[
"HMDB32985"
],
"inchi_key":[
"BKAWJIRCKVUVED-UHFFFAOYSA-N"
],
"kegg.compound":[
"C04294"
],
"metanetx.chemical":[
"MNXM962"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02636"
]
}
},
{
"id":"trnalys_c",
"name":"TRNA(Lys)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnalys_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnalys"
],
"biocyc":[
"META:LYS-tRNAs"
],
"chebi":[
"CHEBI:10685",
"CHEBI:29185",
"CHEBI:15181"
],
"kegg.compound":[
"C01646"
],
"metanetx.chemical":[
"MNXM90881"
],
"reactome.compound":[
"379747",
"379776"
],
"sabiork":[
"3845"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11917",
"cpd27388"
]
}
},
{
"id":"4mpetz_c",
"name":"4-Methyl-5-(2-phosphoethyl)-thiazole",
"compartment":"c",
"charge":-2,
"formula":"C6H8NO4PS",
"notes":{
"original_bigg_ids":[
"4mpetz_c"
]
},
"annotation":{
"bigg.metabolite":[
"4mpetz"
],
"biocyc":[
"META:THZ-P"
],
"chebi":[
"CHEBI:12024",
"CHEBI:58296",
"CHEBI:1892",
"CHEBI:12023",
"CHEBI:46182",
"CHEBI:17857",
"CHEBI:20439",
"CHEBI:30638"
],
"inchi_key":[
"OCYMERZCMYJQQO-UHFFFAOYSA-L"
],
"kegg.compound":[
"C04327"
],
"metanetx.chemical":[
"MNXM960"
],
"sabiork":[
"7237"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02654"
]
}
},
{
"id":"methf_c",
"name":"5,10-Methenyltetrahydrofolate",
"compartment":"c",
"charge":-1,
"formula":"C20H20N7O6",
"notes":{
"original_bigg_ids":[
"methf_c"
]
},
"annotation":{
"bigg.metabolite":[
"methf"
],
"biocyc":[
"META:5-10-METHENYL-THF"
],
"chebi":[
"CHEBI:12069",
"CHEBI:15638",
"CHEBI:12068",
"CHEBI:57455",
"CHEBI:1987"
],
"hmdb":[
"HMDB01354",
"HMDB62623"
],
"inchi_key":[
"MEANFMOQMXYMCT-OLZOCXBDSA-M"
],
"kegg.compound":[
"C00445"
],
"metanetx.chemical":[
"MNXM511"
],
"reactome.compound":[
"6801458"
],
"sabiork":[
"1338"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00347"
]
}
},
{
"id":"lystrna_c",
"name":"L-Lysine-tRNA (Lys)",
"compartment":"c",
"charge":2,
"formula":"C6H14N2OR",
"notes":{
"original_bigg_ids":[
"lystrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"lystrna"
],
"chebi":[
"CHEBI:6267",
"CHEBI:13138",
"CHEBI:13137",
"CHEBI:16047"
],
"kegg.compound":[
"C01931"
],
"metanetx.chemical":[
"MNXM89922"
],
"reactome.compound":[
"379795",
"379736"
],
"sabiork":[
"3865"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15249",
"cpd01326"
]
}
},
{
"id":"5mdr1p_c",
"name":"5-Methylthio-5-deoxy-D-ribose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O7PS",
"notes":{
"original_bigg_ids":[
"5mdr1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"5mdr1p"
],
"biocyc":[
"META:CPD-444"
],
"chebi":[
"CHEBI:20614",
"CHEBI:12769",
"CHEBI:12767",
"CHEBI:20616",
"CHEBI:30310",
"CHEBI:30311",
"CHEBI:58533",
"CHEBI:2102",
"CHEBI:27859",
"CHEBI:12770",
"CHEBI:30309"
],
"inchi_key":[
"JTFITTQBRJDSTL-KVTDHHQDSA-L"
],
"kegg.compound":[
"C04188"
],
"metanetx.chemical":[
"MNXM407"
],
"reactome.compound":[
"1237165"
],
"sabiork":[
"1642"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02574",
"cpd29669"
]
}
},
{
"id":"man6p_c",
"name":"D-Mannose 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"man6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"man6p"
],
"biocyc":[
"META:Mannose-6-phosphate",
"META:CPD-15980",
"META:CPD-15979"
],
"chebi":[
"CHEBI:58735",
"CHEBI:48042",
"CHEBI:48066",
"CHEBI:4211",
"CHEBI:13000",
"CHEBI:17369"
],
"inchi_key":[
"NBSCHQHZLSJFNQ-QTVWNMPRSA-L"
],
"kegg.compound":[
"C00275"
],
"metanetx.chemical":[
"MNXM427"
],
"reactome.compound":[
"532562"
],
"sabiork":[
"1323",
"24709"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00235"
]
}
},
{
"id":"xylu__L_c",
"name":"L-Xylulose",
"compartment":"c",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"xylu_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"xylu__L"
],
"biocyc":[
"META:L-XYLULOSE"
],
"chebi":[
"CHEBI:13190",
"CHEBI:17399",
"CHEBI:6326",
"CHEBI:27353",
"CHEBI:21425"
],
"hmdb":[
"HMDB00751",
"HMDB02245"
],
"inchi_key":[
"ZAQJHHRNXZUBTE-WVZVXSGGSA-N"
],
"kegg.compound":[
"C00312"
],
"metanetx.chemical":[
"MNXM1282"
],
"reactome.compound":[
"5660036"
],
"sabiork":[
"1505",
"23128"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00261"
]
}
},
{
"id":"hg2_p",
"name":"Mercury  charged 2  Hg",
"compartment":"p",
"charge":2,
"formula":"Hg",
"notes":{
"original_bigg_ids":[
"hg2_p"
]
},
"annotation":{
"bigg.metabolite":[
"hg2"
],
"biocyc":[
"META:HG+2"
],
"chebi":[
"CHEBI:25200",
"CHEBI:13370",
"CHEBI:25199",
"CHEBI:16793",
"CHEBI:49640",
"CHEBI:5714"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/79a26c21-7769-4377-9880-413b45e89afe"
],
"hmdb":[
"HMDB03625"
],
"inchi_key":[
"BQPIGGFYSBELGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00703"
],
"metanetx.chemical":[
"MNXM1562"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00531"
]
}
},
{
"id":"Nmtrp_c",
"name":"N-Methyltryptophan",
"compartment":"c",
"charge":0,
"formula":"C12H14N2O2",
"notes":{
"original_bigg_ids":[
"Nmtrp_c"
]
},
"annotation":{
"bigg.metabolite":[
"Nmtrp"
],
"biocyc":[
"META:CPD-392",
"META:N-METHYLTRYPTOPHAN"
],
"chebi":[
"CHEBI:86128",
"CHEBI:85908",
"CHEBI:21207",
"CHEBI:13058",
"CHEBI:57283",
"CHEBI:15334",
"CHEBI:6166"
],
"inchi_key":[
"CZCIKBSVHDNIDH-NSHDSACASA-N"
],
"kegg.compound":[
"C16831",
"C02983"
],
"metanetx.chemical":[
"MNXM3055"
],
"sabiork":[
"6406"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01911",
"cpd19198",
"cpd15389"
]
}
},
{
"id":"lyx__L_c",
"name":"L-Lyxose",
"compartment":"c",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"lyx_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"lyx__L"
],
"biocyc":[
"META:CPD-15867"
],
"chebi":[
"CHEBI:62321"
],
"inchi_key":[
"SRBFZHDQGSBBOR-AEQNFAKKSA-N"
],
"kegg.compound":[
"C01508"
],
"metanetx.chemical":[
"MNXM4641"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01067"
]
}
},
{
"id":"n2o_p",
"name":"Nitrous oxide",
"compartment":"p",
"charge":0,
"formula":"N2O",
"notes":{
"original_bigg_ids":[
"n2o_p"
]
},
"annotation":{
"bigg.metabolite":[
"n2o"
],
"biocyc":[
"META:NITROUS-OXIDE"
],
"chebi":[
"CHEBI:14661",
"CHEBI:25568",
"CHEBI:7598",
"CHEBI:17045",
"CHEBI:44250"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/27f4cd6e-d42f-484e-8813-ef9e60aa5bf0"
],
"hmdb":[
"HMDB35807"
],
"inchi_key":[
"GQPLMRYTRLFLPF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00887"
],
"kegg.drug":[
"D00102"
],
"metanetx.chemical":[
"MNXM579"
],
"sabiork":[
"2179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00659"
]
}
},
{
"id":"hg2_c",
"name":"Mercury  charged 2  Hg",
"compartment":"c",
"charge":2,
"formula":"Hg",
"notes":{
"original_bigg_ids":[
"hg2_c"
]
},
"annotation":{
"bigg.metabolite":[
"hg2"
],
"biocyc":[
"META:HG+2"
],
"chebi":[
"CHEBI:25200",
"CHEBI:13370",
"CHEBI:25199",
"CHEBI:16793",
"CHEBI:49640",
"CHEBI:5714"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/79a26c21-7769-4377-9880-413b45e89afe"
],
"hmdb":[
"HMDB03625"
],
"inchi_key":[
"BQPIGGFYSBELGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00703"
],
"metanetx.chemical":[
"MNXM1562"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00531"
]
}
},
{
"id":"lyx__L_p",
"name":"L-Lyxose",
"compartment":"p",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"lyx_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"lyx__L"
],
"biocyc":[
"META:CPD-15867"
],
"chebi":[
"CHEBI:62321"
],
"inchi_key":[
"SRBFZHDQGSBBOR-AEQNFAKKSA-N"
],
"kegg.compound":[
"C01508"
],
"metanetx.chemical":[
"MNXM4641"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01067"
]
}
},
{
"id":"histd_c",
"name":"L-Histidinol",
"compartment":"c",
"charge":1,
"formula":"C6H12N3O",
"notes":{
"original_bigg_ids":[
"histd_c"
]
},
"annotation":{
"bigg.metabolite":[
"histd"
],
"biocyc":[
"META:HISTIDINOL"
],
"chebi":[
"CHEBI:13118",
"CHEBI:57699",
"CHEBI:16255",
"CHEBI:6241",
"CHEBI:21326"
],
"hmdb":[
"HMDB03431"
],
"inchi_key":[
"ZQISRDCJNBUVMM-YFKPBYRVSA-O"
],
"kegg.compound":[
"C00860"
],
"metanetx.chemical":[
"MNXM1281"
],
"sabiork":[
"5283"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00641"
]
}
},
{
"id":"n2o_c",
"name":"Nitrous oxide",
"compartment":"c",
"charge":0,
"formula":"N2O",
"notes":{
"original_bigg_ids":[
"n2o_c"
]
},
"annotation":{
"bigg.metabolite":[
"n2o"
],
"biocyc":[
"META:NITROUS-OXIDE"
],
"chebi":[
"CHEBI:14661",
"CHEBI:25568",
"CHEBI:7598",
"CHEBI:17045",
"CHEBI:44250"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/27f4cd6e-d42f-484e-8813-ef9e60aa5bf0"
],
"hmdb":[
"HMDB35807"
],
"inchi_key":[
"GQPLMRYTRLFLPF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00887"
],
"kegg.drug":[
"D00102"
],
"metanetx.chemical":[
"MNXM579"
],
"sabiork":[
"2179"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00659"
]
}
},
{
"id":"lac__L_c",
"name":"L-Lactate",
"compartment":"c",
"charge":-1,
"formula":"C3H5O3",
"notes":{
"original_bigg_ids":[
"lac_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"lac__L"
],
"biocyc":[
"META:L-LACTATE"
],
"chebi":[
"CHEBI:11065",
"CHEBI:16651",
"CHEBI:422",
"CHEBI:18783",
"CHEBI:12411"
],
"hmdb":[
"HMDB62492",
"HMDB00190",
"HMDB03328"
],
"inchi_key":[
"JVTAAEKCZFNVCJ-REOHCLBHSA-M"
],
"kegg.compound":[
"C00186"
],
"metanetx.chemical":[
"MNXM179"
],
"reactome.compound":[
"373863",
"29708",
"6807616"
],
"sabiork":[
"1312"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00159"
]
}
},
{
"id":"nac_p",
"name":"Nicotinate",
"compartment":"p",
"charge":-1,
"formula":"C6H4NO2",
"notes":{
"original_bigg_ids":[
"nac_p"
]
},
"annotation":{
"bigg.metabolite":[
"nac"
],
"biocyc":[
"META:NIACINE"
],
"chebi":[
"CHEBI:7559",
"CHEBI:14650",
"CHEBI:32544",
"CHEBI:25538",
"CHEBI:25530",
"CHEBI:22851",
"CHEBI:44319",
"CHEBI:15940"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ed8ac75f-3a91-484c-9d21-d318ef0efef6",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ca85f0e1-e6b7-458b-8f88-d4ed6b580217"
],
"hmdb":[
"HMDB01488"
],
"inchi_key":[
"PVNIIMVLHYAWGP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00253"
],
"kegg.drug":[
"D00049"
],
"metanetx.chemical":[
"MNXM274"
],
"reactome.compound":[
"8869604",
"197230"
],
"sabiork":[
"1994"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00218"
]
}
},
{
"id":"hisp_c",
"name":"L-Histidinol phosphate",
"compartment":"c",
"charge":-1,
"formula":"C6H11N3O4P",
"notes":{
"original_bigg_ids":[
"hisp_c"
]
},
"annotation":{
"bigg.metabolite":[
"hisp"
],
"biocyc":[
"META:L-HISTIDINOL-P"
],
"chebi":[
"CHEBI:16996",
"CHEBI:43319",
"CHEBI:57980",
"CHEBI:6242",
"CHEBI:21327",
"CHEBI:13119"
],
"inchi_key":[
"CWNDERHTHMWBSI-YFKPBYRVSA-M"
],
"kegg.compound":[
"C01100"
],
"metanetx.chemical":[
"MNXM1482"
],
"sabiork":[
"1699"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00807"
]
}
},
{
"id":"lac__L_p",
"name":"L-Lactate",
"compartment":"p",
"charge":-1,
"formula":"C3H5O3",
"notes":{
"original_bigg_ids":[
"lac_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"lac__L"
],
"biocyc":[
"META:L-LACTATE"
],
"chebi":[
"CHEBI:11065",
"CHEBI:16651",
"CHEBI:422",
"CHEBI:18783",
"CHEBI:12411"
],
"hmdb":[
"HMDB62492",
"HMDB00190",
"HMDB03328"
],
"inchi_key":[
"JVTAAEKCZFNVCJ-REOHCLBHSA-M"
],
"kegg.compound":[
"C00186"
],
"metanetx.chemical":[
"MNXM179"
],
"reactome.compound":[
"373863",
"29708",
"6807616"
],
"sabiork":[
"1312"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00159"
]
}
},
{
"id":"histrna_c",
"name":"L-Histidyl-tRNA(His)",
"compartment":"c",
"charge":1,
"formula":"C6H8N3OR",
"notes":{
"original_bigg_ids":[
"histrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"histrna"
],
"chebi":[
"CHEBI:13120",
"CHEBI:6243",
"CHEBI:29155"
],
"kegg.compound":[
"C02988"
],
"metanetx.chemical":[
"MNXM89831"
],
"reactome.compound":[
"379786",
"379764"
],
"sabiork":[
"3862"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12228"
]
}
},
{
"id":"nac_c",
"name":"Nicotinate",
"compartment":"c",
"charge":-1,
"formula":"C6H4NO2",
"notes":{
"original_bigg_ids":[
"nac_c"
]
},
"annotation":{
"bigg.metabolite":[
"nac"
],
"biocyc":[
"META:NIACINE"
],
"chebi":[
"CHEBI:7559",
"CHEBI:14650",
"CHEBI:32544",
"CHEBI:25538",
"CHEBI:25530",
"CHEBI:22851",
"CHEBI:44319",
"CHEBI:15940"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ed8ac75f-3a91-484c-9d21-d318ef0efef6",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ca85f0e1-e6b7-458b-8f88-d4ed6b580217"
],
"hmdb":[
"HMDB01488"
],
"inchi_key":[
"PVNIIMVLHYAWGP-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00253"
],
"kegg.drug":[
"D00049"
],
"metanetx.chemical":[
"MNXM274"
],
"reactome.compound":[
"8869604",
"197230"
],
"sabiork":[
"1994"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00218"
]
}
},
{
"id":"trnahis_c",
"name":"TRNA(His)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnahis_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnahis"
],
"biocyc":[
"META:HIS-tRNAs"
],
"chebi":[
"CHEBI:15178",
"CHEBI:29178",
"CHEBI:10682"
],
"kegg.compound":[
"C01643"
],
"metanetx.chemical":[
"MNXM90878"
],
"reactome.compound":[
"379752",
"379758"
],
"sabiork":[
"3842"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27218",
"cpd11914"
]
}
},
{
"id":"mnl1p_c",
"name":"D-Mannitol 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H13O9P",
"notes":{
"original_bigg_ids":[
"mnl1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"mnl1p"
],
"biocyc":[
"META:MANNITOL-1P"
],
"chebi":[
"CHEBI:21051",
"CHEBI:16298",
"CHEBI:4205",
"CHEBI:12997",
"CHEBI:61381"
],
"hmdb":[
"HMDB01530"
],
"inchi_key":[
"GACTWZZMVMUKNG-KVTDHHQDSA-L"
],
"kegg.compound":[
"C00644"
],
"metanetx.chemical":[
"MNXM90126"
],
"sabiork":[
"24719",
"1343"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00491",
"cpd27436"
]
}
},
{
"id":"his__L_p",
"name":"L-Histidine",
"compartment":"p",
"charge":0,
"formula":"C6H9N3O2",
"notes":{
"original_bigg_ids":[
"his_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"his__L"
],
"biocyc":[
"META:HIS"
],
"chebi":[
"CHEBI:43239",
"CHEBI:32529",
"CHEBI:43048",
"CHEBI:5733",
"CHEBI:32530",
"CHEBI:27570",
"CHEBI:32531",
"CHEBI:43118",
"CHEBI:32513",
"CHEBI:15971",
"CHEBI:43190",
"CHEBI:21324",
"CHEBI:32512",
"CHEBI:32511",
"CHEBI:13117",
"CHEBI:43114",
"CHEBI:32510",
"CHEBI:6240",
"CHEBI:32532",
"CHEBI:57595",
"CHEBI:24598"
],
"hmdb":[
"HMDB00177",
"HMDB03412"
],
"inchi_key":[
"HNDVDQJCIGZPNO-YFKPBYRVSA-N"
],
"kegg.compound":[
"C00768",
"C00135"
],
"kegg.drug":[
"D00032"
],
"metanetx.chemical":[
"MNXM134"
],
"reactome.compound":[
"379695",
"29612"
],
"sabiork":[
"2151",
"81"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00119",
"cpd00572"
]
}
},
{
"id":"nmn_c",
"name":"NMN C11H14N2O8P",
"compartment":"c",
"charge":-1,
"formula":"C11H14N2O8P",
"notes":{
"original_bigg_ids":[
"nmn_c"
]
},
"annotation":{
"bigg.metabolite":[
"nmn"
],
"biocyc":[
"META:NICOTINAMIDE_NUCLEOTIDE"
],
"chebi":[
"CHEBI:14648",
"CHEBI:7557",
"CHEBI:14647",
"CHEBI:22850",
"CHEBI:16171",
"CHEBI:10433",
"CHEBI:13409",
"CHEBI:14649",
"CHEBI:18201",
"CHEBI:25522",
"CHEBI:12397",
"CHEBI:14646"
],
"hmdb":[
"HMDB00229",
"HMDB59645"
],
"inchi_key":[
"DAYLJWODMCOQEW-TURQNECASA-M"
],
"kegg.compound":[
"C00455"
],
"metanetx.chemical":[
"MNXM355"
],
"reactome.compound":[
"8869353",
"549282",
"8940067"
],
"sabiork":[
"3871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00355"
]
}
},
{
"id":"ncam_c",
"name":"Nicotinamide",
"compartment":"c",
"charge":0,
"formula":"C6H6N2O",
"notes":{
"original_bigg_ids":[
"ncam_c"
]
},
"annotation":{
"bigg.metabolite":[
"ncam"
],
"biocyc":[
"META:NIACINAMIDE"
],
"chebi":[
"CHEBI:14645",
"CHEBI:7556",
"CHEBI:25521",
"CHEBI:17154",
"CHEBI:44258"
],
"hmdb":[
"HMDB01406"
],
"inchi_key":[
"DFPAKSUCGFBDDF-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00153"
],
"kegg.drug":[
"D00036"
],
"metanetx.chemical":[
"MNXM216"
],
"reactome.compound":[
"197277",
"8870343"
],
"sabiork":[
"1949"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00133"
]
}
},
{
"id":"mal__D_p",
"name":"D-Malate",
"compartment":"p",
"charge":-2,
"formula":"C4H4O5",
"notes":{
"original_bigg_ids":[
"mal_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"mal__D"
],
"biocyc":[
"META:CPD-660"
],
"chebi":[
"CHEBI:44073",
"CHEBI:342",
"CHEBI:42060",
"CHEBI:30796",
"CHEBI:15588",
"CHEBI:18685",
"CHEBI:18686",
"CHEBI:11002"
],
"hmdb":[
"HMDB31518"
],
"inchi_key":[
"BJEPYKJPYRNKOW-UWTATZPHSA-L"
],
"kegg.compound":[
"C00497"
],
"metanetx.chemical":[
"MNXM1608"
],
"sabiork":[
"2062"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00386"
]
}
},
{
"id":"dnad_c",
"name":"Deamino-NAD+",
"compartment":"c",
"charge":-2,
"formula":"C21H24N6O15P2",
"notes":{
"original_bigg_ids":[
"dnad_c"
]
},
"annotation":{
"bigg.metabolite":[
"dnad"
],
"biocyc":[
"META:DEAMIDO-NAD"
],
"chebi":[
"CHEBI:14104",
"CHEBI:58437",
"CHEBI:14103",
"CHEBI:4340",
"CHEBI:14105",
"CHEBI:18304",
"CHEBI:23567"
],
"hmdb":[
"HMDB01179"
],
"inchi_key":[
"SENPVEZBRZQVST-HISDBWNOSA-L"
],
"kegg.compound":[
"C00857"
],
"metanetx.chemical":[
"MNXM309"
],
"reactome.compound":[
"8938090",
"200499",
"197256"
],
"sabiork":[
"1349"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00638"
]
}
},
{
"id":"ppbng_c",
"name":"Porphobilinogen",
"compartment":"c",
"charge":-1,
"formula":"C10H13N2O4",
"notes":{
"original_bigg_ids":[
"ppbng_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppbng"
],
"biocyc":[
"META:PORPHOBILINOGEN"
],
"chebi":[
"CHEBI:58126",
"CHEBI:8335",
"CHEBI:14867",
"CHEBI:26212",
"CHEBI:44832",
"CHEBI:17381"
],
"hmdb":[
"HMDB00245"
],
"inchi_key":[
"QSHWIQZFGQKFMA-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00931"
],
"metanetx.chemical":[
"MNXM554"
],
"reactome.compound":[
"189464"
],
"sabiork":[
"5324"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00689"
]
}
},
{
"id":"mal__D_c",
"name":"D-Malate",
"compartment":"c",
"charge":-2,
"formula":"C4H4O5",
"notes":{
"original_bigg_ids":[
"mal_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"mal__D"
],
"biocyc":[
"META:CPD-660"
],
"chebi":[
"CHEBI:44073",
"CHEBI:342",
"CHEBI:42060",
"CHEBI:30796",
"CHEBI:15588",
"CHEBI:18685",
"CHEBI:18686",
"CHEBI:11002"
],
"hmdb":[
"HMDB31518"
],
"inchi_key":[
"BJEPYKJPYRNKOW-UWTATZPHSA-L"
],
"kegg.compound":[
"C00497"
],
"metanetx.chemical":[
"MNXM1608"
],
"sabiork":[
"2062"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00386"
]
}
},
{
"id":"hmbil_c",
"name":"Hydroxymethylbilane",
"compartment":"c",
"charge":-8,
"formula":"C40H38N4O17",
"notes":{
"original_bigg_ids":[
"hmbil_c"
]
},
"annotation":{
"bigg.metabolite":[
"hmbil"
],
"biocyc":[
"META:HYDROXYMETHYLBILANE"
],
"chebi":[
"CHEBI:14423",
"CHEBI:5809",
"CHEBI:57845",
"CHEBI:16645",
"CHEBI:24716"
],
"hmdb":[
"HMDB01137"
],
"inchi_key":[
"WDFJYRZCZIUBPR-UHFFFAOYSA-F"
],
"kegg.compound":[
"C01024"
],
"metanetx.chemical":[
"MNXM547"
],
"reactome.compound":[
"189449"
],
"sabiork":[
"5362"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00755"
]
}
},
{
"id":"nicrnt_c",
"name":"Nicotinate D-ribonucleotide",
"compartment":"c",
"charge":-2,
"formula":"C11H12NO9P",
"notes":{
"original_bigg_ids":[
"nicrnt_c"
]
},
"annotation":{
"bigg.metabolite":[
"nicrnt"
],
"biocyc":[
"META:NICOTINATE_NUCLEOTIDE"
],
"chebi":[
"CHEBI:7561",
"CHEBI:25532",
"CHEBI:14652",
"CHEBI:15763",
"CHEBI:12398",
"CHEBI:14651",
"CHEBI:57502"
],
"hmdb":[
"HMDB59646"
],
"inchi_key":[
"JOUIQRNQJGXQDC-ZYUZMQFOSA-L"
],
"kegg.compound":[
"C01185"
],
"metanetx.chemical":[
"MNXM194"
],
"reactome.compound":[
"200492",
"8938083",
"197220"
],
"sabiork":[
"5427"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00873"
]
}
},
{
"id":"acmalt_c",
"name":"Acetyl-maltose",
"compartment":"c",
"charge":0,
"formula":"C14H24O12",
"notes":{
"original_bigg_ids":[
"acmalt_c"
]
},
"annotation":{
"bigg.metabolite":[
"acmalt"
],
"biocyc":[
"META:CPD-18529"
],
"inchi_key":[
"IJVLHLCOMOKFHH-DURRTVQMSA-N"
],
"kegg.compound":[
"C02130"
],
"kegg.glycan":[
"G10592"
],
"metanetx.chemical":[
"MNXM3135"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01441"
]
}
},
{
"id":"dudp_c",
"name":"DUDP C9H11N2O11P2",
"compartment":"c",
"charge":-3,
"formula":"C9H11N2O11P2",
"notes":{
"original_bigg_ids":[
"dudp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dudp"
],
"biocyc":[
"META:DUDP"
],
"chebi":[
"CHEBI:60471",
"CHEBI:19262",
"CHEBI:10531",
"CHEBI:28850"
],
"hmdb":[
"HMDB01000"
],
"inchi_key":[
"QHWZTVCCBMIIKE-SHYZEUOFSA-K"
],
"kegg.compound":[
"C01346"
],
"metanetx.chemical":[
"MNXM572"
],
"sabiork":[
"1714"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00978"
]
}
},
{
"id":"4ahmmp_c",
"name":"4-Amino-5-hydroxymethyl-2-methylpyrimidine",
"compartment":"c",
"charge":0,
"formula":"C6H9N3O",
"notes":{
"original_bigg_ids":[
"4ahmmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"4ahmmp"
],
"biocyc":[
"META:HMP"
],
"chebi":[
"CHEBI:43206",
"CHEBI:11957",
"CHEBI:1781",
"CHEBI:16892",
"CHEBI:20312"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05e806c1-5e9c-4cd7-b31a-1cff94880c8a"
],
"inchi_key":[
"VUTBELPREDJDDH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01279"
],
"metanetx.chemical":[
"MNXM874"
],
"sabiork":[
"5497"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00939"
]
}
},
{
"id":"maltpt_p",
"name":"Maltopentaose",
"compartment":"p",
"charge":0,
"formula":"C30H52O26",
"notes":{
"original_bigg_ids":[
"maltpt_p"
]
},
"annotation":{
"bigg.metabolite":[
"maltpt"
],
"biocyc":[
"META:MALTOPENTAOSE"
],
"chebi":[
"CHEBI:61952",
"CHEBI:62006"
],
"hmdb":[
"HMDB12254"
],
"inchi_key":[
"FTNIPWXXIGNQQF-DWTFCAFKSA-N"
],
"kegg.glycan":[
"G00343"
],
"metanetx.chemical":[
"MNXM1538"
],
"sabiork":[
"18865"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15495"
]
}
},
{
"id":"3hpppn_p",
"name":"3-(3-hydroxy-phenyl)propionate",
"compartment":"p",
"charge":-1,
"formula":"C9H9O3",
"notes":{
"original_bigg_ids":[
"3hpppn_p"
]
},
"annotation":{
"bigg.metabolite":[
"3hpppn"
],
"biocyc":[
"META:3-HYDROXYPHENYL-PROPIONATE"
],
"chebi":[
"CHEBI:57277",
"CHEBI:1427"
],
"hmdb":[
"HMDB00375"
],
"inchi_key":[
"QVWAEZJXDYOKEH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C11457"
],
"metanetx.chemical":[
"MNXM1634"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08304"
]
}
},
{
"id":"no_c",
"name":"Nitric oxide",
"compartment":"c",
"charge":0,
"formula":"NO",
"notes":{
"original_bigg_ids":[
"no_c"
]
},
"annotation":{
"bigg.metabolite":[
"no"
],
"biocyc":[
"META:NITRIC-OXIDE"
],
"chebi":[
"CHEBI:16480",
"CHEBI:25546",
"CHEBI:14657",
"CHEBI:44452",
"CHEBI:7583"
],
"hmdb":[
"HMDB03378"
],
"inchi_key":[
"MWUXSHHQAYIFBG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00533"
],
"kegg.drug":[
"D00074"
],
"metanetx.chemical":[
"MNXM228"
],
"sbo":"SBO:0000247"
}
},
{
"id":"malttr_p",
"name":"Maltotriose C18H32O16",
"compartment":"p",
"charge":0,
"formula":"C18H32O16",
"notes":{
"original_bigg_ids":[
"malttr_p"
]
},
"annotation":{
"bigg.metabolite":[
"malttr"
],
"biocyc":[
"META:MALTOTRIOSE"
],
"chebi":[
"CHEBI:61993",
"CHEBI:6672",
"CHEBI:25146",
"CHEBI:43937",
"CHEBI:27931"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/7d7cf31a-30a5-4368-8802-9269424379b6"
],
"hmdb":[
"HMDB01262"
],
"inchi_key":[
"FYGDTMLNYKFZSV-PXXRMHSHSA-N"
],
"kegg.compound":[
"C01835"
],
"metanetx.chemical":[
"MNXM468"
],
"reactome.compound":[
"191103"
],
"sabiork":[
"5832"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01262"
]
}
},
{
"id":"ni2_p",
"name":"Nickel",
"compartment":"p",
"charge":2,
"formula":"Ni",
"notes":{
"original_bigg_ids":[
"ni2_p"
]
},
"annotation":{
"bigg.metabolite":[
"ni2"
],
"biocyc":[
"META:NI+2"
],
"chebi":[
"CHEBI:25517",
"CHEBI:49785",
"CHEBI:49786"
],
"hmdb":[
"HMDB02457"
],
"inchi_key":[
"VEQPNABPJHWNSG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19609"
],
"metanetx.chemical":[
"MNXM3673"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20862"
]
}
},
{
"id":"hpyr_c",
"name":"Hydroxypyruvate",
"compartment":"c",
"charge":-1,
"formula":"C3H3O4",
"notes":{
"original_bigg_ids":[
"hpyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"hpyr"
],
"biocyc":[
"META:OH-PYR"
],
"chebi":[
"CHEBI:20083",
"CHEBI:39999",
"CHEBI:11837",
"CHEBI:30841",
"CHEBI:5813",
"CHEBI:17180",
"CHEBI:14425",
"CHEBI:20082"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/7db40782-1f6e-447d-aaf1-b17c4f9bd437",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/15496999-93c3-48e0-a69c-8e2ca0503508"
],
"hmdb":[
"HMDB01352"
],
"inchi_key":[
"HHDDCCUIIUWNGJ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00168"
],
"metanetx.chemical":[
"MNXM392"
],
"sabiork":[
"1959"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00145"
]
}
},
{
"id":"maltttr_p",
"name":"Maltotetraose",
"compartment":"p",
"charge":0,
"formula":"C24H42O21",
"notes":{
"original_bigg_ids":[
"maltttr_p"
]
},
"annotation":{
"bigg.metabolite":[
"maltttr"
],
"biocyc":[
"META:MALTOTETRAOSE",
"META:CPD0-2595",
"META:CPD-13205"
],
"chebi":[
"CHEBI:6671",
"CHEBI:61988",
"CHEBI:28460",
"CHEBI:62974",
"CHEBI:25145",
"CHEBI:44299"
],
"hmdb":[
"HMDB01296"
],
"inchi_key":[
"LUEWUZLMQUOBSB-ZLBHSGTGSA-N"
],
"kegg.compound":[
"C02013",
"C02052"
],
"kegg.glycan":[
"G00459"
],
"metanetx.chemical":[
"MNXM5663"
],
"sabiork":[
"5941",
"5966"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01376",
"cpd01399"
]
}
},
{
"id":"phom_c",
"name":"O-Phospho-L-homoserine",
"compartment":"c",
"charge":-2,
"formula":"C4H8NO6P",
"notes":{
"original_bigg_ids":[
"phom_c"
]
},
"annotation":{
"bigg.metabolite":[
"phom"
],
"biocyc":[
"META:O-PHOSPHO-L-HOMOSERINE"
],
"chebi":[
"CHEBI:21965",
"CHEBI:7691",
"CHEBI:15961",
"CHEBI:57590",
"CHEBI:12717",
"CHEBI:12693"
],
"hmdb":[
"HMDB03484",
"HMDB06495",
"HMDB62692"
],
"inchi_key":[
"FXDNYOANAXWZHG-VKHMYHEASA-L"
],
"kegg.compound":[
"C01102"
],
"metanetx.chemical":[
"MNXM1334"
],
"sabiork":[
"2246"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00809"
]
}
},
{
"id":"ni2_c",
"name":"Nickel",
"compartment":"c",
"charge":2,
"formula":"Ni",
"notes":{
"original_bigg_ids":[
"ni2_c"
]
},
"annotation":{
"bigg.metabolite":[
"ni2"
],
"biocyc":[
"META:NI+2"
],
"chebi":[
"CHEBI:25517",
"CHEBI:49785",
"CHEBI:49786"
],
"hmdb":[
"HMDB02457"
],
"inchi_key":[
"VEQPNABPJHWNSG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C19609"
],
"metanetx.chemical":[
"MNXM3673"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd20862"
]
}
},
{
"id":"malt_p",
"name":"Maltose C12H22O11",
"compartment":"p",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"malt_p"
]
},
"annotation":{
"bigg.metabolite":[
"malt"
],
"biocyc":[
"META:MALTOSE",
"META:ALPHA-MALTOSE"
],
"chebi":[
"CHEBI:6668",
"CHEBI:12340",
"CHEBI:43893",
"CHEBI:22463",
"CHEBI:10300",
"CHEBI:14568",
"CHEBI:18167",
"CHEBI:17306",
"CHEBI:25144"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/943ae27f-7875-4bcd-948d-1551ec9aa1ca"
],
"inchi_key":[
"GUBGYTABKSRVRQ-PICCSMPSSA-N"
],
"kegg.compound":[
"C00897",
"C00208"
],
"kegg.drug":[
"D00044"
],
"kegg.glycan":[
"G00275"
],
"metanetx.chemical":[
"MNXM165"
],
"reactome.compound":[
"188986",
"868706"
],
"sabiork":[
"5881",
"88",
"1669"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00665",
"cpd00179"
]
}
},
{
"id":"nmn_p",
"name":"NMN C11H14N2O8P",
"compartment":"p",
"charge":-1,
"formula":"C11H14N2O8P",
"notes":{
"original_bigg_ids":[
"nmn_p"
]
},
"annotation":{
"bigg.metabolite":[
"nmn"
],
"biocyc":[
"META:NICOTINAMIDE_NUCLEOTIDE"
],
"chebi":[
"CHEBI:14648",
"CHEBI:7557",
"CHEBI:14647",
"CHEBI:22850",
"CHEBI:16171",
"CHEBI:10433",
"CHEBI:13409",
"CHEBI:14649",
"CHEBI:18201",
"CHEBI:25522",
"CHEBI:12397",
"CHEBI:14646"
],
"hmdb":[
"HMDB00229",
"HMDB59645"
],
"inchi_key":[
"DAYLJWODMCOQEW-TURQNECASA-M"
],
"kegg.compound":[
"C00455"
],
"metanetx.chemical":[
"MNXM355"
],
"reactome.compound":[
"8869353",
"549282",
"8940067"
],
"sabiork":[
"3871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00355"
]
}
},
{
"id":"suchms_c",
"name":"O-Succinyl-L-homoserine",
"compartment":"c",
"charge":-1,
"formula":"C8H12NO6",
"notes":{
"original_bigg_ids":[
"suchms_c"
]
},
"annotation":{
"bigg.metabolite":[
"suchms"
],
"biocyc":[
"META:O-SUCCINYL-L-HOMOSERINE"
],
"chebi":[
"CHEBI:16160",
"CHEBI:12723",
"CHEBI:12699",
"CHEBI:57661",
"CHEBI:21975",
"CHEBI:7704"
],
"inchi_key":[
"GNISQJGXJIDKDJ-YFKPBYRVSA-M"
],
"kegg.compound":[
"C01118"
],
"metanetx.chemical":[
"MNXM820"
],
"sabiork":[
"2250"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00822"
]
}
},
{
"id":"malt6p_c",
"name":"Maltose 6'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C12H21O14P",
"notes":{
"original_bigg_ids":[
"malt6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"malt6p"
],
"biocyc":[
"META:CPD-1244",
"META:CPD-15982"
],
"chebi":[
"CHEBI:6669",
"CHEBI:25142",
"CHEBI:6670",
"CHEBI:14569",
"CHEBI:57478",
"CHEBI:111006",
"CHEBI:91177",
"CHEBI:15703"
],
"inchi_key":[
"ITPHOIFCAFNCLL-ASMJPISFSA-L"
],
"kegg.compound":[
"C02995"
],
"kegg.glycan":[
"G10519"
],
"metanetx.chemical":[
"MNXM2394"
],
"sabiork":[
"6408"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01919"
]
}
},
{
"id":"imacp_c",
"name":"3-(Imidazol-4-yl)-2-oxopropyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H7N2O5P",
"notes":{
"original_bigg_ids":[
"imacp_c"
]
},
"annotation":{
"bigg.metabolite":[
"imacp"
],
"biocyc":[
"META:IMIDAZOLE-ACETOL-P"
],
"chebi":[
"CHEBI:57766",
"CHEBI:1437",
"CHEBI:16426",
"CHEBI:19941",
"CHEBI:11736"
],
"hmdb":[
"HMDB12236"
],
"inchi_key":[
"YCFFMSOLUMRAMD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01267"
],
"metanetx.chemical":[
"MNXM1456"
],
"sabiork":[
"5486"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00930"
]
}
},
{
"id":"quln_c",
"name":"Quinolinate",
"compartment":"c",
"charge":-2,
"formula":"C7H3NO4",
"notes":{
"original_bigg_ids":[
"quln_c"
]
},
"annotation":{
"bigg.metabolite":[
"quln"
],
"biocyc":[
"META:QUINOLINATE"
],
"chebi":[
"CHEBI:14975",
"CHEBI:29959",
"CHEBI:46832",
"CHEBI:44529",
"CHEBI:8663",
"CHEBI:46828",
"CHEBI:46833",
"CHEBI:26418",
"CHEBI:132942",
"CHEBI:26417",
"CHEBI:16675"
],
"hmdb":[
"HMDB00232"
],
"inchi_key":[
"GJAWHXHKYYXBSV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C03722"
],
"metanetx.chemical":[
"MNXM555"
],
"reactome.compound":[
"197238"
],
"sabiork":[
"6817"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02333"
]
}
},
{
"id":"hxan_c",
"name":"Hypoxanthine",
"compartment":"c",
"charge":0,
"formula":"C5H4N4O",
"notes":{
"original_bigg_ids":[
"hxan_c"
]
},
"annotation":{
"bigg.metabolite":[
"hxan"
],
"biocyc":[
"META:HYPOXANTHINE"
],
"chebi":[
"CHEBI:14431",
"CHEBI:43237",
"CHEBI:5841",
"CHEBI:17368",
"CHEBI:24762"
],
"hmdb":[
"HMDB00157"
],
"inchi_key":[
"FDGQSTZJBFJUBT-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00262"
],
"metanetx.chemical":[
"MNXM213"
],
"reactome.compound":[
"113599"
],
"sabiork":[
"5528",
"1321"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00226"
]
}
},
{
"id":"mal__L_p",
"name":"L-Malate",
"compartment":"p",
"charge":-2,
"formula":"C4H4O5",
"notes":{
"original_bigg_ids":[
"mal_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"mal__L"
],
"biocyc":[
"META:MAL"
],
"chebi":[
"CHEBI:15589",
"CHEBI:30797",
"CHEBI:423",
"CHEBI:18784",
"CHEBI:18785",
"CHEBI:13140",
"CHEBI:11066"
],
"hmdb":[
"HMDB00156"
],
"inchi_key":[
"BJEPYKJPYRNKOW-REOHCLBHSA-L"
],
"kegg.compound":[
"C00149"
],
"metanetx.chemical":[
"MNXM98"
],
"reactome.compound":[
"198498",
"113544"
],
"sabiork":[
"1918"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00130"
]
}
},
{
"id":"no2_c",
"name":"Nitrite",
"compartment":"c",
"charge":-1,
"formula":"NO2",
"notes":{
"original_bigg_ids":[
"no2_c"
]
},
"annotation":{
"bigg.metabolite":[
"no2"
],
"biocyc":[
"META:NITRITE"
],
"chebi":[
"CHEBI:16301",
"CHEBI:14658",
"CHEBI:7585",
"CHEBI:44396",
"CHEBI:25567"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/84af9b8c-5f58-4093-85cb-964ba8ed40b7"
],
"hmdb":[
"HMDB02786"
],
"inchi_key":[
"IOVCWXUNBOPUCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00088"
],
"metanetx.chemical":[
"MNXM107"
],
"reactome.compound":[
"1222379"
],
"sabiork":[
"3058"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00075"
]
}
},
{
"id":"no2_p",
"name":"Nitrite",
"compartment":"p",
"charge":-1,
"formula":"NO2",
"notes":{
"original_bigg_ids":[
"no2_p"
]
},
"annotation":{
"bigg.metabolite":[
"no2"
],
"biocyc":[
"META:NITRITE"
],
"chebi":[
"CHEBI:16301",
"CHEBI:14658",
"CHEBI:7585",
"CHEBI:44396",
"CHEBI:25567"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/84af9b8c-5f58-4093-85cb-964ba8ed40b7"
],
"hmdb":[
"HMDB02786"
],
"inchi_key":[
"IOVCWXUNBOPUCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00088"
],
"metanetx.chemical":[
"MNXM107"
],
"reactome.compound":[
"1222379"
],
"sabiork":[
"3058"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00075"
]
}
},
{
"id":"man6p_p",
"name":"D-Mannose 6-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"man6p_p"
]
},
"annotation":{
"bigg.metabolite":[
"man6p"
],
"biocyc":[
"META:Mannose-6-phosphate",
"META:CPD-15980",
"META:CPD-15979"
],
"chebi":[
"CHEBI:58735",
"CHEBI:48042",
"CHEBI:48066",
"CHEBI:4211",
"CHEBI:13000",
"CHEBI:17369"
],
"inchi_key":[
"NBSCHQHZLSJFNQ-QTVWNMPRSA-L"
],
"kegg.compound":[
"C00275"
],
"metanetx.chemical":[
"MNXM427"
],
"reactome.compound":[
"532562"
],
"sabiork":[
"1323",
"24709"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00235"
]
}
},
{
"id":"no3_p",
"name":"Nitrate",
"compartment":"p",
"charge":-1,
"formula":"NO3",
"notes":{
"original_bigg_ids":[
"no3_p"
]
},
"annotation":{
"bigg.metabolite":[
"no3"
],
"biocyc":[
"META:NITRATE",
"META:CPD-15028"
],
"chebi":[
"CHEBI:44487",
"CHEBI:14654",
"CHEBI:71263",
"CHEBI:7580",
"CHEBI:17632",
"CHEBI:48107",
"CHEBI:25545"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/706be27f-b4cf-4022-b2ef-04cec5197ca5"
],
"hmdb":[
"HMDB02878",
"HMDB01853"
],
"inchi_key":[
"NHNBFGGVMKEFGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00244"
],
"kegg.drug":[
"D02313"
],
"metanetx.chemical":[
"MNXM207"
],
"sabiork":[
"1988"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00209"
]
}
},
{
"id":"manglyc_p",
"name":"2(alpha-D-Mannosyl)-D-glycerate",
"compartment":"p",
"charge":-1,
"formula":"C9H15O9",
"notes":{
"original_bigg_ids":[
"manglyc_p"
]
},
"annotation":{
"bigg.metabolite":[
"manglyc"
],
"biocyc":[
"META:2-O-ALPHA-MANNOSYL-D-GLYCERATE"
],
"chebi":[
"CHEBI:11403",
"CHEBI:57541",
"CHEBI:851",
"CHEBI:15847"
],
"inchi_key":[
"DDXCFDOPXBPUJC-SAYMMRJXSA-M"
],
"kegg.compound":[
"C11544"
],
"metanetx.chemical":[
"MNXM1624"
],
"sabiork":[
"13606"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08374"
]
}
},
{
"id":"no3_c",
"name":"Nitrate",
"compartment":"c",
"charge":-1,
"formula":"NO3",
"notes":{
"original_bigg_ids":[
"no3_c"
]
},
"annotation":{
"bigg.metabolite":[
"no3"
],
"biocyc":[
"META:NITRATE",
"META:CPD-15028"
],
"chebi":[
"CHEBI:44487",
"CHEBI:14654",
"CHEBI:71263",
"CHEBI:7580",
"CHEBI:17632",
"CHEBI:48107",
"CHEBI:25545"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/706be27f-b4cf-4022-b2ef-04cec5197ca5"
],
"hmdb":[
"HMDB02878",
"HMDB01853"
],
"inchi_key":[
"NHNBFGGVMKEFGY-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00244"
],
"kegg.drug":[
"D02313"
],
"metanetx.chemical":[
"MNXM207"
],
"sabiork":[
"1988"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00209"
]
}
},
{
"id":"pe140_p",
"name":"Phosphatidylethanolamine (ditetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":0,
"formula":"C33H66N1O8P1",
"notes":{
"original_bigg_ids":[
"pe140_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe140"
],
"biocyc":[
"META:CPD-17087"
],
"hmdb":[
"HMDB08821",
"HMDB05313"
],
"lipidmaps":[
"LMGP02010352"
],
"metanetx.chemical":[
"MNXM2859"
],
"sbo":"SBO:0000247",
"slm":[
"000034918"
]
}
},
{
"id":"man_p",
"name":"D-Mannose",
"compartment":"p",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"man_p"
]
},
"annotation":{
"bigg.metabolite":[
"man"
],
"biocyc":[
"META:D-mannopyranose"
],
"chebi":[
"CHEBI:4208",
"CHEBI:37684",
"CHEBI:14575",
"CHEBI:16024",
"CHEBI:21057",
"CHEBI:33930",
"CHEBI:12999"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c5f931e8-e7f7-4b73-bed6-48662796fe18"
],
"hmdb":[
"HMDB00169"
],
"inchi_key":[
"WQZGKKKJIJFFOK-QTVWNMPRSA-N"
],
"kegg.compound":[
"C00159"
],
"metanetx.chemical":[
"MNXM182"
],
"reactome.compound":[
"964752",
"6799594",
"429579"
],
"sabiork":[
"1656"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00138",
"cpd27437"
]
}
},
{
"id":"pe141_p",
"name":"Phosphatidylethanolamine (ditetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":0,
"formula":"C33H62N1O8P1",
"notes":{
"original_bigg_ids":[
"pe141_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe141"
],
"metanetx.chemical":[
"MNXM3693"
],
"sbo":"SBO:0000247"
}
},
{
"id":"no_p",
"name":"Nitric oxide",
"compartment":"p",
"charge":0,
"formula":"NO",
"notes":{
"original_bigg_ids":[
"no_p"
]
},
"annotation":{
"bigg.metabolite":[
"no"
],
"biocyc":[
"META:NITRIC-OXIDE"
],
"chebi":[
"CHEBI:16480",
"CHEBI:25546",
"CHEBI:14657",
"CHEBI:44452",
"CHEBI:7583"
],
"hmdb":[
"HMDB03378"
],
"inchi_key":[
"MWUXSHHQAYIFBG-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00533"
],
"kegg.drug":[
"D00074"
],
"metanetx.chemical":[
"MNXM228"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2mcacn_c",
"name":"Cis-2-Methylaconitate",
"compartment":"c",
"charge":-3,
"formula":"C7H5O6",
"notes":{
"original_bigg_ids":[
"2mcacn_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mcacn"
],
"biocyc":[
"META:CPD-1136"
],
"chebi":[
"CHEBI:57872",
"CHEBI:11084",
"CHEBI:18819",
"CHEBI:456",
"CHEBI:16717"
],
"hmdb":[
"HMDB06357"
],
"inchi_key":[
"NUZLRKBHOBPTQV-ARJAWSKDSA-K"
],
"kegg.compound":[
"C04225"
],
"metanetx.chemical":[
"MNXM1792"
],
"sabiork":[
"7166"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02597"
]
}
},
{
"id":"sbzcoa_c",
"name":"O-Succinylbenzoyl-CoA",
"compartment":"c",
"charge":-5,
"formula":"C32H39N7O20P3S",
"notes":{
"original_bigg_ids":[
"sbzcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"sbzcoa"
],
"biocyc":[
"META:CPD-6972"
],
"chebi":[
"CHEBI:15509",
"CHEBI:12700",
"CHEBI:57364",
"CHEBI:12836",
"CHEBI:19779",
"CHEBI:1279"
],
"inchi_key":[
"AVOVYFCDODUXLY-HSJNEKGZSA-I"
],
"kegg.compound":[
"C03160"
],
"metanetx.chemical":[
"MNXM1132"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02021"
]
}
},
{
"id":"pe180_p",
"name":"Phosphatidylethanolamine (dioctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":0,
"formula":"C41H82N1O8P1",
"notes":{
"original_bigg_ids":[
"pe180_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe180"
],
"biocyc":[
"META:CPD-12818"
],
"chebi":[
"CHEBI:47765",
"CHEBI:44886",
"CHEBI:39934",
"CHEBI:47766"
],
"hmdb":[
"HMDB05327",
"HMDB08991"
],
"inchi_key":[
"LVNGJLRDBYCPGB-LDLOPFEMSA-N"
],
"lipidmaps":[
"LMGP02010097"
],
"metanetx.chemical":[
"MNXM31536"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15533",
"cpd23596"
],
"slm":[
"000034913"
]
}
},
{
"id":"2mcit_c",
"name":"2-Methylcitrate",
"compartment":"c",
"charge":-3,
"formula":"C7H7O7",
"notes":{
"original_bigg_ids":[
"2mcit_c"
]
},
"annotation":{
"bigg.metabolite":[
"2mcit"
],
"biocyc":[
"META:CPD-622"
],
"chebi":[
"CHEBI:30836",
"CHEBI:10860",
"CHEBI:19696",
"CHEBI:30835",
"CHEBI:19695",
"CHEBI:50948",
"CHEBI:58853",
"CHEBI:19630",
"CHEBI:11618",
"CHEBI:11592",
"CHEBI:15598",
"CHEBI:1203"
],
"hmdb":[
"HMDB03610",
"HMDB00379"
],
"inchi_key":[
"YNOXCRMFGMSKIJ-NFNCENRGSA-K"
],
"kegg.compound":[
"C02225"
],
"lipidmaps":[
"LMFA01050442"
],
"metanetx.chemical":[
"MNXM90279"
],
"sabiork":[
"2387"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01501",
"cpd24620"
]
}
},
{
"id":"pe181_p",
"name":"Phosphatidylethanolamine (dioctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":0,
"formula":"C41H78N1O8P1",
"notes":{
"original_bigg_ids":[
"pe181_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe181"
],
"metanetx.chemical":[
"MNXM2150"
],
"sbo":"SBO:0000247"
}
},
{
"id":"xtsn_c",
"name":"Xanthosine",
"compartment":"c",
"charge":0,
"formula":"C10H12N4O6",
"notes":{
"original_bigg_ids":[
"xtsn_c"
]
},
"annotation":{
"bigg.metabolite":[
"xtsn"
],
"biocyc":[
"META:XANTHOSINE"
],
"chebi":[
"CHEBI:15323",
"CHEBI:27327",
"CHEBI:18107",
"CHEBI:10066"
],
"hmdb":[
"HMDB00299"
],
"inchi_key":[
"UBORTCNDUKBEOP-UUOKFMHZSA-N"
],
"kegg.compound":[
"C01762"
],
"metanetx.chemical":[
"MNXM687"
],
"sabiork":[
"1878"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01217"
]
}
},
{
"id":"micit_c",
"name":"Methylisocitrate",
"compartment":"c",
"charge":-3,
"formula":"C7H7O7",
"notes":{
"original_bigg_ids":[
"micit_c"
]
},
"annotation":{
"bigg.metabolite":[
"micit"
],
"biocyc":[
"META:CPD-618"
],
"chebi":[
"CHEBI:57429",
"CHEBI:189",
"CHEBI:18550",
"CHEBI:15607",
"CHEBI:10869"
],
"inchi_key":[
"HHKPKXCSHMJWCF-WVBDSBKLSA-K"
],
"kegg.compound":[
"C04593"
],
"lipidmaps":[
"LMFA01050444"
],
"metanetx.chemical":[
"MNXM1694"
],
"sabiork":[
"7424"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02799"
]
}
},
{
"id":"xmp_p",
"name":"Xanthosine 5'-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C10H11N4O9P",
"notes":{
"original_bigg_ids":[
"xmp_p"
]
},
"annotation":{
"bigg.metabolite":[
"xmp"
],
"biocyc":[
"META:XANTHOSINE-5-PHOSPHATE"
],
"chebi":[
"CHEBI:10938",
"CHEBI:57464",
"CHEBI:27328",
"CHEBI:15324",
"CHEBI:10067",
"CHEBI:15652"
],
"hmdb":[
"HMDB01554",
"HMDB62755"
],
"inchi_key":[
"DCTLYFZHFGENCW-UUOKFMHZSA-L"
],
"kegg.compound":[
"C00655"
],
"metanetx.chemical":[
"MNXM298"
],
"reactome.compound":[
"111584"
],
"sabiork":[
"1686"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00497"
]
}
},
{
"id":"peamn_p",
"name":"Phenethylamine",
"compartment":"p",
"charge":1,
"formula":"C8H12N",
"notes":{
"original_bigg_ids":[
"peamn_p"
]
},
"annotation":{
"bigg.metabolite":[
"peamn"
],
"biocyc":[
"META:PHENYLETHYLAMINE"
],
"chebi":[
"CHEBI:8063",
"CHEBI:14782",
"CHEBI:50048",
"CHEBI:25965",
"CHEBI:18397",
"CHEBI:45001",
"CHEBI:225237"
],
"hmdb":[
"HMDB60276",
"HMDB12275"
],
"inchi_key":[
"BHHGXPLMPWCGHP-UHFFFAOYSA-O"
],
"kegg.compound":[
"C05332"
],
"metanetx.chemical":[
"MNXM660"
],
"reactome.compound":[
"500605"
],
"sabiork":[
"2769"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03161"
]
}
},
{
"id":"mercppyr_c",
"name":"Mercaptopyruvate",
"compartment":"c",
"charge":-1,
"formula":"C3H3O3S",
"notes":{
"original_bigg_ids":[
"mercppyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"mercppyr"
],
"biocyc":[
"META:3-MERCAPTO-PYRUVATE"
],
"chebi":[
"CHEBI:6767",
"CHEBI:16208",
"CHEBI:20103",
"CHEBI:14583",
"CHEBI:57678",
"CHEBI:11847",
"CHEBI:20104"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/867afe4f-221e-465f-b082-bf34bbb99022"
],
"hmdb":[
"HMDB01368"
],
"inchi_key":[
"OJOLFAIGOXZBCI-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00957"
],
"metanetx.chemical":[
"MNXM1214"
],
"sabiork":[
"2196"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00706"
]
}
},
{
"id":"tag6p__D_c",
"name":"D-Tagatose 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"tag6p_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"tag6p__D"
],
"biocyc":[
"META:TAGATOSE-6-PHOSPHATE"
],
"chebi":[
"CHEBI:4251",
"CHEBI:21097",
"CHEBI:17837",
"CHEBI:58695",
"CHEBI:13025"
],
"hmdb":[
"HMDB06873"
],
"inchi_key":[
"BGWGXPAPYGQALX-OEXCPVAWSA-L"
],
"kegg.compound":[
"C01097"
],
"metanetx.chemical":[
"MNXM795"
],
"sabiork":[
"1352"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00805"
]
}
},
{
"id":"xtsn_p",
"name":"Xanthosine",
"compartment":"p",
"charge":0,
"formula":"C10H12N4O6",
"notes":{
"original_bigg_ids":[
"xtsn_p"
]
},
"annotation":{
"bigg.metabolite":[
"xtsn"
],
"biocyc":[
"META:XANTHOSINE"
],
"chebi":[
"CHEBI:15323",
"CHEBI:27327",
"CHEBI:18107",
"CHEBI:10066"
],
"hmdb":[
"HMDB00299"
],
"inchi_key":[
"UBORTCNDUKBEOP-UUOKFMHZSA-N"
],
"kegg.compound":[
"C01762"
],
"metanetx.chemical":[
"MNXM687"
],
"sabiork":[
"1878"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01217"
]
}
},
{
"id":"murein5p5p_p",
"name":"Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C80H124N16O42",
"notes":{
"original_bigg_ids":[
"murein5p5p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5p5p"
],
"biocyc":[
"META:CPD0-2283"
],
"inchi_key":[
"WSONNHVKPYOZEY-UHFFFAOYSA-E"
],
"metanetx.chemical":[
"MNXM88345"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15511"
]
}
},
{
"id":"dimp_c",
"name":"DIMP C10H12N4O7P",
"compartment":"c",
"charge":-2,
"formula":"C10H11N4O7P",
"notes":{
"original_bigg_ids":[
"dimp_c"
]
},
"annotation":{
"bigg.metabolite":[
"dimp"
],
"biocyc":[
"META:DIMP"
],
"chebi":[
"CHEBI:41998",
"CHEBI:43389",
"CHEBI:61194",
"CHEBI:19250",
"CHEBI:43315",
"CHEBI:44500",
"CHEBI:837",
"CHEBI:43384",
"CHEBI:43377",
"CHEBI:28806"
],
"hmdb":[
"HMDB06555"
],
"inchi_key":[
"PHNGFPPXDJJADG-RRKCRQDMSA-L"
],
"kegg.compound":[
"C06196"
],
"metanetx.chemical":[
"MNXM1922"
],
"reactome.compound":[
"109330",
"2509805"
],
"sabiork":[
"1858"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03704"
]
}
},
{
"id":"tagdp__D_c",
"name":"D-Tagatose 1,6-biphosphate",
"compartment":"c",
"charge":-4,
"formula":"C6H10O12P2",
"notes":{
"original_bigg_ids":[
"tagdp_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"tagdp__D"
],
"biocyc":[
"META:TAGATOSE-1-6-DIPHOSPHATE"
],
"chebi":[
"CHEBI:13024",
"CHEBI:58694",
"CHEBI:16743",
"CHEBI:4250",
"CHEBI:21096"
],
"hmdb":[
"HMDB06872"
],
"inchi_key":[
"RNBGYGVWRKECFJ-OEXCPVAWSA-J"
],
"kegg.compound":[
"C03785"
],
"metanetx.chemical":[
"MNXM1324"
],
"sabiork":[
"1514"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02371",
"cpd29681"
]
}
},
{
"id":"murein5px3p_p",
"name":"Two disacharide linked murein units, pentapeptide corsslinked tripeptide (A2pm->A2pm) (middle of chain)",
"compartment":"p",
"charge":-4,
"formula":"C74H112N14O39",
"notes":{
"original_bigg_ids":[
"murein5px3p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5px3p"
],
"metanetx.chemical":[
"MNXM5970"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15513"
]
}
},
{
"id":"3php_c",
"name":"3-Phosphohydroxypyruvate",
"compartment":"c",
"charge":-3,
"formula":"C3H2O7P",
"notes":{
"original_bigg_ids":[
"3php_c"
]
},
"annotation":{
"bigg.metabolite":[
"3php"
],
"biocyc":[
"META:3-P-HYDROXYPYRUVATE"
],
"chebi":[
"CHEBI:11883",
"CHEBI:11884",
"CHEBI:18110",
"CHEBI:1661",
"CHEBI:20192",
"CHEBI:20191",
"CHEBI:30933"
],
"hmdb":[
"HMDB60175",
"HMDB01024"
],
"inchi_key":[
"LFLUCDOSQPJJBE-UHFFFAOYSA-K"
],
"kegg.compound":[
"C03232"
],
"metanetx.chemical":[
"MNXM541"
],
"reactome.compound":[
"977329"
],
"sabiork":[
"2712"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02069"
]
}
},
{
"id":"ump_p",
"name":"UMP C9H11N2O9P",
"compartment":"p",
"charge":-2,
"formula":"C9H11N2O9P",
"notes":{
"original_bigg_ids":[
"ump_p"
]
},
"annotation":{
"bigg.metabolite":[
"ump"
],
"biocyc":[
"META:UMP"
],
"chebi":[
"CHEBI:47721",
"CHEBI:9849",
"CHEBI:27231",
"CHEBI:46382",
"CHEBI:16695",
"CHEBI:13509",
"CHEBI:13508",
"CHEBI:46385",
"CHEBI:57865",
"CHEBI:46362"
],
"hmdb":[
"HMDB00288"
],
"inchi_key":[
"DJJCXFVJDGTHFX-XVFCMESISA-L"
],
"kegg.compound":[
"C00105"
],
"metanetx.chemical":[
"MNXM80"
],
"reactome.compound":[
"735698",
"109402"
],
"sabiork":[
"1300",
"25061"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00091"
]
}
},
{
"id":"murein5px4px4p_p",
"name":"Three disacharide linked murein units (pentapeptide crosslinked tetrapeptide (A2pm->D-ala) tetrapeptide corsslinked tetrapeptide (A2pm->D-ala)) (middle of chain)",
"compartment":"p",
"charge":-6,
"formula":"C114H172N22O59",
"notes":{
"original_bigg_ids":[
"murein5px4px4p_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein5px4px4p"
],
"biocyc":[
"META:CPD0-2296"
],
"inchi_key":[
"UVVIMBIDZMDRCG-UHFFFAOYSA-D"
],
"metanetx.chemical":[
"MNXM87121"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15515"
]
}
},
{
"id":"thymd_c",
"name":"Thymidine C10H14N2O5",
"compartment":"c",
"charge":0,
"formula":"C10H14N2O5",
"notes":{
"original_bigg_ids":[
"thymd_c"
]
},
"annotation":{
"bigg.metabolite":[
"thymd"
],
"biocyc":[
"META:THYMIDINE"
],
"chebi":[
"CHEBI:45834",
"CHEBI:45917",
"CHEBI:17748",
"CHEBI:9579",
"CHEBI:45918",
"CHEBI:19273",
"CHEBI:45782",
"CHEBI:15244",
"CHEBI:53527"
],
"hmdb":[
"HMDB00273"
],
"inchi_key":[
"IQFYYKKMVGJFEH-XLPZGREQSA-N"
],
"kegg.compound":[
"C00214"
],
"metanetx.chemical":[
"MNXM420"
],
"reactome.compound":[
"83928"
],
"sabiork":[
"1315"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00184"
]
}
},
{
"id":"2pglyc_c",
"name":"2-Phosphoglycolate",
"compartment":"c",
"charge":-3,
"formula":"C2H2O6P",
"notes":{
"original_bigg_ids":[
"2pglyc_c"
]
},
"annotation":{
"bigg.metabolite":[
"2pglyc"
],
"biocyc":[
"META:CPD-67"
],
"chebi":[
"CHEBI:1268",
"CHEBI:19764",
"CHEBI:19763",
"CHEBI:11652",
"CHEBI:44849",
"CHEBI:17150",
"CHEBI:58033"
],
"hmdb":[
"HMDB60148",
"HMDB00816"
],
"inchi_key":[
"ASCFNMCAHFUBCO-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00988"
],
"metanetx.chemical":[
"MNXM2074"
],
"sabiork":[
"1350"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00727"
]
}
},
{
"id":"sucgsa_c",
"name":"N2-Succinyl-L-glutamate 5-semialdehyde",
"compartment":"c",
"charge":-2,
"formula":"C9H11NO6",
"notes":{
"original_bigg_ids":[
"sucgsa_c"
]
},
"annotation":{
"bigg.metabolite":[
"sucgsa"
],
"biocyc":[
"META:CPD-822"
],
"chebi":[
"CHEBI:7374",
"CHEBI:21820",
"CHEBI:58520",
"CHEBI:27657"
],
"hmdb":[
"HMDB01180"
],
"inchi_key":[
"XTOKIEIBKARFSZ-LURJTMIESA-L"
],
"kegg.compound":[
"C05932"
],
"metanetx.chemical":[
"MNXM1763"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03526"
]
}
},
{
"id":"pgp120_c",
"name":"Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)",
"compartment":"c",
"charge":-3,
"formula":"C30H57O13P2",
"notes":{
"original_bigg_ids":[
"pgp120_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp120"
],
"metanetx.chemical":[
"MNXM5266"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pgp120_p",
"name":"Phosphatidylglycerophosphate (didodecanoyl, n-C12:0)",
"compartment":"p",
"charge":-3,
"formula":"C30H57O13P2",
"notes":{
"original_bigg_ids":[
"pgp120_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp120"
],
"metanetx.chemical":[
"MNXM5266"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pgp140_p",
"name":"Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)",
"compartment":"p",
"charge":-3,
"formula":"C34H65O13P2",
"notes":{
"original_bigg_ids":[
"pgp140_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp140"
],
"metanetx.chemical":[
"MNXM5272"
],
"sbo":"SBO:0000247"
}
},
{
"id":"thymd_p",
"name":"Thymidine C10H14N2O5",
"compartment":"p",
"charge":0,
"formula":"C10H14N2O5",
"notes":{
"original_bigg_ids":[
"thymd_p"
]
},
"annotation":{
"bigg.metabolite":[
"thymd"
],
"biocyc":[
"META:THYMIDINE"
],
"chebi":[
"CHEBI:45834",
"CHEBI:45917",
"CHEBI:17748",
"CHEBI:9579",
"CHEBI:45918",
"CHEBI:19273",
"CHEBI:45782",
"CHEBI:15244",
"CHEBI:53527"
],
"hmdb":[
"HMDB00273"
],
"inchi_key":[
"IQFYYKKMVGJFEH-XLPZGREQSA-N"
],
"kegg.compound":[
"C00214"
],
"metanetx.chemical":[
"MNXM420"
],
"reactome.compound":[
"83928"
],
"sabiork":[
"1315"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00184"
]
}
},
{
"id":"didp_c",
"name":"DIDP; 2'-deoxyinosine-5'-diphosphate(3-)",
"compartment":"c",
"charge":-3,
"formula":"C10H11N4O10P2",
"notes":{
"original_bigg_ids":[
"didp_c"
]
},
"annotation":{
"bigg.metabolite":[
"didp"
],
"biocyc":[
"META:CPD0-2231"
],
"chebi":[
"CHEBI:10498",
"CHEBI:19249",
"CHEBI:28823",
"CHEBI:62286"
],
"hmdb":[
"HMDB03536"
],
"inchi_key":[
"BKUSIKGSPSFQAC-RRKCRQDMSA-K"
],
"kegg.compound":[
"C01344"
],
"metanetx.chemical":[
"MNXM2174"
],
"reactome.compound":[
"2509796"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00976"
]
}
},
{
"id":"xdp_c",
"name":"XDP",
"compartment":"c",
"charge":-3,
"formula":"C10H11N4O12P2",
"notes":{
"original_bigg_ids":[
"xdp_c"
]
},
"annotation":{
"bigg.metabolite":[
"xdp"
],
"biocyc":[
"META:XDP"
],
"chebi":[
"CHEBI:10048",
"CHEBI:59884"
],
"inchi_key":[
"YMOPVQQBWLGDOD-UUOKFMHZSA-K"
],
"kegg.compound":[
"C01337"
],
"metanetx.chemical":[
"MNXM4133"
],
"sabiork":[
"2271"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00972"
]
}
},
{
"id":"2shchc_c",
"name":"2-Succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate",
"compartment":"c",
"charge":-2,
"formula":"C11H10O6",
"notes":{
"original_bigg_ids":[
"2shchc_c"
]
},
"annotation":{
"bigg.metabolite":[
"2shchc"
],
"biocyc":[
"META:CPD-9923"
],
"chebi":[
"CHEBI:39564",
"CHEBI:58689"
],
"inchi_key":[
"QJYRAJSESKVEAE-PSASIEDQSA-L"
],
"kegg.compound":[
"C05817"
],
"metanetx.chemical":[
"MNXM1249"
],
"sabiork":[
"8173"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03451"
]
}
},
{
"id":"o2s_p",
"name":"Superoxide anion",
"compartment":"p",
"charge":-1,
"formula":"O2",
"notes":{
"original_bigg_ids":[
"o2s_p"
]
},
"annotation":{
"bigg.metabolite":[
"o2s"
],
"biocyc":[
"META:SUPER-OXIDE"
],
"chebi":[
"CHEBI:25935",
"CHEBI:30492",
"CHEBI:7710",
"CHEBI:18421",
"CHEBI:15143",
"CHEBI:26839"
],
"hmdb":[
"HMDB02168"
],
"inchi_key":[
"OUUQCZGPVNCOIJ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00704"
],
"metanetx.chemical":[
"MNXM330"
],
"reactome.compound":[
"1222461",
"1475048",
"1470070"
],
"sabiork":[
"5191"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pgp140_c",
"name":"Phosphatidylglycerophosphate (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"charge":-3,
"formula":"C34H65O13P2",
"notes":{
"original_bigg_ids":[
"pgp140_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp140"
],
"metanetx.chemical":[
"MNXM5272"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ohpb_c",
"name":"2-Oxo-3-hydroxy-4-phosphobutanoate",
"compartment":"c",
"charge":-3,
"formula":"C4H4O8P",
"notes":{
"original_bigg_ids":[
"ohpb_c"
]
},
"annotation":{
"bigg.metabolite":[
"ohpb"
],
"biocyc":[
"META:3OH-4P-OH-ALPHA-KETOBUTYRATE"
],
"chebi":[
"CHEBI:19731",
"CHEBI:58538",
"CHEBI:1240",
"CHEBI:27951"
],
"hmdb":[
"HMDB06801"
],
"inchi_key":[
"MZJFVXDTNBHTKZ-UWTATZPHSA-K"
],
"kegg.compound":[
"C06054"
],
"metanetx.chemical":[
"MNXM1514"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03606"
]
}
},
{
"id":"dscl_c",
"name":"Dihydrosirohydrochlorin",
"compartment":"c",
"charge":-7,
"formula":"C42H41N4O16",
"notes":{
"original_bigg_ids":[
"dscl_c"
]
},
"annotation":{
"bigg.metabolite":[
"dscl"
],
"biocyc":[
"META:DIHYDROSIROHYDROCHLORIN"
],
"chebi":[
"CHEBI:58827",
"CHEBI:50602",
"CHEBI:14870",
"CHEBI:8370"
],
"inchi_key":[
"OQIIYZQTTMKFAU-ZNLOQLQNSA-G"
],
"kegg.compound":[
"C02463"
],
"metanetx.chemical":[
"MNXM672"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01620"
]
}
},
{
"id":"2omph_c",
"name":"2-Octaprenyl-6-methoxyphenol",
"compartment":"c",
"charge":0,
"formula":"C47H72O2",
"notes":{
"original_bigg_ids":[
"2omph_c"
]
},
"annotation":{
"bigg.metabolite":[
"2omph"
],
"biocyc":[
"META:2-OCTAPRENYL-6-METHOXYPHENOL"
],
"chebi":[
"CHEBI:1235"
],
"inchi_key":[
"MYNOBJRQIKYBRD-MGHGRUFNSA-N"
],
"kegg.compound":[
"C05812"
],
"metanetx.chemical":[
"MNXM1707"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03446"
]
}
},
{
"id":"pgp141_p",
"name":"Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)",
"compartment":"p",
"charge":-3,
"formula":"C34H61O13P2",
"notes":{
"original_bigg_ids":[
"pgp141_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp141"
],
"metanetx.chemical":[
"MNXM5271"
],
"sbo":"SBO:0000247"
}
},
{
"id":"scl_c",
"name":"Sirohydrochlorin",
"compartment":"c",
"charge":-7,
"formula":"C42H39N4O16",
"notes":{
"original_bigg_ids":[
"scl_c"
]
},
"annotation":{
"bigg.metabolite":[
"scl"
],
"biocyc":[
"META:SIROHYDROCHLORIN"
],
"chebi":[
"CHEBI:58351",
"CHEBI:9167",
"CHEBI:18023",
"CHEBI:15090",
"CHEBI:26691"
],
"inchi_key":[
"KWIZRXMMFRBUML-AHGFGAHVSA-F"
],
"kegg.compound":[
"C05778"
],
"metanetx.chemical":[
"MNXM863"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03426"
]
}
},
{
"id":"pgp141_c",
"name":"Phosphatidylglycerophosphate (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"charge":-3,
"formula":"C34H61O13P2",
"notes":{
"original_bigg_ids":[
"pgp141_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp141"
],
"metanetx.chemical":[
"MNXM5271"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pgp160_c",
"name":"Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"charge":-3,
"formula":"C38H73O13P2",
"notes":{
"original_bigg_ids":[
"pgp160_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp160"
],
"biocyc":[
"META:CPD-12821"
],
"hmdb":[
"HMDB13472"
],
"inchi_key":[
"ONJBJMDJKLHMEK-MPQUPPDSSA-K"
],
"metanetx.chemical":[
"MNXM32180"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15545",
"cpd23599"
],
"slm":[
"000475616"
]
}
},
{
"id":"2ombzl_c",
"name":"2-Octaprenyl-6-methoxy-1,4-benzoquinol",
"compartment":"c",
"charge":0,
"formula":"C47H72O3",
"notes":{
"original_bigg_ids":[
"2ombzl_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ombzl"
],
"biocyc":[
"META:OCTAPRENYL-METHOXY-BENZOQUINONE"
],
"chebi":[
"CHEBI:60655"
],
"inchi_key":[
"CZFRMASEEPTBAQ-MYCGWMCTSA-N"
],
"metanetx.chemical":[
"MNXM90444"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15359"
]
}
},
{
"id":"2ommbl_c",
"name":"2-Octaprenyl-3-methyl-6-methoxy- 1,4-benzoquinol",
"compartment":"c",
"charge":0,
"formula":"C48H74O3",
"notes":{
"original_bigg_ids":[
"2ommbl_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ommbl"
],
"biocyc":[
"META:OCTAPRENYL-METHYL-METHOXY-BENZQ"
],
"chebi":[
"CHEBI:60656"
],
"hmdb":[
"HMDB11661"
],
"inchi_key":[
"HDSGDGSLNMIMKU-KFSSTAEESA-N"
],
"metanetx.chemical":[
"MNXM1899"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15361"
]
}
},
{
"id":"skm_c",
"name":"Shikimate",
"compartment":"c",
"charge":-1,
"formula":"C7H9O5",
"notes":{
"original_bigg_ids":[
"skm_c"
]
},
"annotation":{
"bigg.metabolite":[
"skm"
],
"biocyc":[
"META:SHIKIMATE"
],
"chebi":[
"CHEBI:15083",
"CHEBI:26664",
"CHEBI:9133",
"CHEBI:45740",
"CHEBI:26662",
"CHEBI:16119",
"CHEBI:26663",
"CHEBI:36208"
],
"hmdb":[
"HMDB03070"
],
"inchi_key":[
"JXOHGGNKMLTUBP-HSUXUTPPSA-M"
],
"kegg.compound":[
"C00493"
],
"metanetx.chemical":[
"MNXM602"
],
"reactome.compound":[
"964932"
],
"sabiork":[
"5117"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00383"
]
}
},
{
"id":"orot5p_c",
"name":"Orotidine 5'-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C10H10N2O11P",
"notes":{
"original_bigg_ids":[
"orot5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"orot5p"
],
"biocyc":[
"META:OROTIDINE-5-PHOSPHATE"
],
"chebi":[
"CHEBI:57538",
"CHEBI:15842",
"CHEBI:14699",
"CHEBI:7788",
"CHEBI:25723"
],
"hmdb":[
"HMDB00218"
],
"inchi_key":[
"KYOBSHFOBAOFBF-XVFCMESISA-K"
],
"kegg.compound":[
"C01103"
],
"metanetx.chemical":[
"MNXM519"
],
"reactome.compound":[
"111629"
],
"sabiork":[
"1700"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00810"
]
}
},
{
"id":"2oph_c",
"name":"2-Octaprenylphenol",
"compartment":"c",
"charge":0,
"formula":"C46H70O",
"notes":{
"original_bigg_ids":[
"2oph_c"
]
},
"annotation":{
"bigg.metabolite":[
"2oph"
],
"biocyc":[
"META:2-OCTAPRENYLPHENOL"
],
"chebi":[
"CHEBI:40407",
"CHEBI:1236",
"CHEBI:40398"
],
"inchi_key":[
"VUNQJPPPTJIREN-CMAXTTDKSA-N"
],
"kegg.compound":[
"C05810"
],
"metanetx.chemical":[
"MNXM1886"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03444"
]
}
},
{
"id":"orot_p",
"name":"Orotate C5H3N2O4",
"compartment":"p",
"charge":-1,
"formula":"C5H3N2O4",
"notes":{
"original_bigg_ids":[
"orot_p"
]
},
"annotation":{
"bigg.metabolite":[
"orot"
],
"biocyc":[
"META:OROTATE"
],
"chebi":[
"CHEBI:14698",
"CHEBI:7787",
"CHEBI:16742",
"CHEBI:25720",
"CHEBI:44781",
"CHEBI:30839",
"CHEBI:25719"
],
"hmdb":[
"HMDB00226"
],
"inchi_key":[
"PXQPEWDEAKTCGB-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00295"
],
"kegg.drug":[
"D00055"
],
"metanetx.chemical":[
"MNXM235"
],
"reactome.compound":[
"76632"
],
"sabiork":[
"2009"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00247"
]
}
},
{
"id":"oaa_p",
"name":"Oxaloacetate",
"compartment":"p",
"charge":-2,
"formula":"C4H2O5",
"notes":{
"original_bigg_ids":[
"oaa_p"
]
},
"annotation":{
"bigg.metabolite":[
"oaa"
],
"biocyc":[
"META:OXALACETIC_ACID"
],
"chebi":[
"CHEBI:25731",
"CHEBI:24959",
"CHEBI:12820",
"CHEBI:16452",
"CHEBI:30744",
"CHEBI:14703",
"CHEBI:24958",
"CHEBI:7812",
"CHEBI:25734",
"CHEBI:29049"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/133a11f3-81b0-4384-837e-1ccdd0a2a645",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/40afaad4-431a-4e3c-b4c7-020dbe4bdd2a",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/be7c543c-40bd-4698-9821-22f2e65c38f3"
],
"hmdb":[
"HMDB00223"
],
"inchi_key":[
"KHPXUQMNIQBQEV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00036"
],
"lipidmaps":[
"LMFA01170120"
],
"metanetx.chemical":[
"MNXM46"
],
"reactome.compound":[
"6810070",
"113587",
"76213"
],
"sabiork":[
"1915"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00032"
]
}
},
{
"id":"oxur_c",
"name":"Oxalureate",
"compartment":"c",
"charge":-1,
"formula":"C3H3N2O4",
"notes":{
"original_bigg_ids":[
"oxur_c"
]
},
"annotation":{
"bigg.metabolite":[
"oxur"
],
"biocyc":[
"META:CPD-389"
],
"chebi":[
"CHEBI:57824",
"CHEBI:25736",
"CHEBI:14706",
"CHEBI:25737",
"CHEBI:16582",
"CHEBI:7816"
],
"inchi_key":[
"UWBHMRBRLOJJAA-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00802"
],
"metanetx.chemical":[
"MNXM1088"
],
"sabiork":[
"1877"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00596"
]
}
},
{
"id":"pgp160_p",
"name":"Phosphatidylglycerophosphate (dihexadecanoyl, n-C16:0)",
"compartment":"p",
"charge":-3,
"formula":"C38H73O13P2",
"notes":{
"original_bigg_ids":[
"pgp160_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp160"
],
"biocyc":[
"META:CPD-12821"
],
"hmdb":[
"HMDB13472"
],
"inchi_key":[
"ONJBJMDJKLHMEK-MPQUPPDSSA-K"
],
"metanetx.chemical":[
"MNXM32180"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15545",
"cpd23599"
],
"slm":[
"000475616"
]
}
},
{
"id":"pgp161_c",
"name":"Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)",
"compartment":"c",
"charge":-3,
"formula":"C38H69O13P2",
"notes":{
"original_bigg_ids":[
"pgp161_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp161"
],
"biocyc":[
"META:CPD0-2230"
],
"inchi_key":[
"PTJJTQQVMKSSOK-WXUKJITCSA-K"
],
"metanetx.chemical":[
"MNXM75103"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15546",
"cpd26451"
]
}
},
{
"id":"pgp161_p",
"name":"Phosphatidylglycerophosphate (dihexadec-9-enoyl, n-C16:1)",
"compartment":"p",
"charge":-3,
"formula":"C38H69O13P2",
"notes":{
"original_bigg_ids":[
"pgp161_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp161"
],
"biocyc":[
"META:CPD0-2230"
],
"inchi_key":[
"PTJJTQQVMKSSOK-WXUKJITCSA-K"
],
"metanetx.chemical":[
"MNXM75103"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15546",
"cpd26451"
]
}
},
{
"id":"pgp180_p",
"name":"Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)",
"compartment":"p",
"charge":-3,
"formula":"C42H81O13P2",
"notes":{
"original_bigg_ids":[
"pgp180_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp180"
],
"biocyc":[
"META:CPD-12820"
],
"hmdb":[
"HMDB13504"
],
"inchi_key":[
"UZNYMWWMHBZMLI-IOLBBIBUSA-K"
],
"metanetx.chemical":[
"MNXM75104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23598",
"cpd15547"
],
"slm":[
"000475620"
]
}
},
{
"id":"pgp180_c",
"name":"Phosphatidylglycerophosphate (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"charge":-3,
"formula":"C42H81O13P2",
"notes":{
"original_bigg_ids":[
"pgp180_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp180"
],
"biocyc":[
"META:CPD-12820"
],
"hmdb":[
"HMDB13504"
],
"inchi_key":[
"UZNYMWWMHBZMLI-IOLBBIBUSA-K"
],
"metanetx.chemical":[
"MNXM75104"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23598",
"cpd15547"
],
"slm":[
"000475620"
]
}
},
{
"id":"pgp181_p",
"name":"Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)",
"compartment":"p",
"charge":-3,
"formula":"C42H77O13P2",
"notes":{
"original_bigg_ids":[
"pgp181_p"
]
},
"annotation":{
"bigg.metabolite":[
"pgp181"
],
"metanetx.chemical":[
"MNXM5269"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pgp181_c",
"name":"Phosphatidylglycerophosphate (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"charge":-3,
"formula":"C42H77O13P2",
"notes":{
"original_bigg_ids":[
"pgp181_c"
]
},
"annotation":{
"bigg.metabolite":[
"pgp181"
],
"metanetx.chemical":[
"MNXM5269"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ssaltpp_c",
"name":"Succinate semialdehyde-thiamin diphosphate anion",
"compartment":"c",
"charge":-3,
"formula":"C16H21N4O10P2S",
"notes":{
"original_bigg_ids":[
"ssaltpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"ssaltpp"
],
"metanetx.chemical":[
"MNXM92663"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03450"
]
}
},
{
"id":"skm_p",
"name":"Shikimate",
"compartment":"p",
"charge":-1,
"formula":"C7H9O5",
"notes":{
"original_bigg_ids":[
"skm_p"
]
},
"annotation":{
"bigg.metabolite":[
"skm"
],
"biocyc":[
"META:SHIKIMATE"
],
"chebi":[
"CHEBI:15083",
"CHEBI:26664",
"CHEBI:9133",
"CHEBI:45740",
"CHEBI:26662",
"CHEBI:16119",
"CHEBI:26663",
"CHEBI:36208"
],
"hmdb":[
"HMDB03070"
],
"inchi_key":[
"JXOHGGNKMLTUBP-HSUXUTPPSA-M"
],
"kegg.compound":[
"C00493"
],
"metanetx.chemical":[
"MNXM602"
],
"reactome.compound":[
"964932"
],
"sabiork":[
"5117"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00383"
]
}
},
{
"id":"pacald_c",
"name":"Phenylacetaldehyde",
"compartment":"c",
"charge":0,
"formula":"C8H8O",
"notes":{
"original_bigg_ids":[
"pacald_c"
]
},
"annotation":{
"bigg.metabolite":[
"pacald"
],
"biocyc":[
"META:PHENYLACETALDEHYDE"
],
"chebi":[
"CHEBI:14778",
"CHEBI:25972",
"CHEBI:43163",
"CHEBI:16424",
"CHEBI:8084"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1df960d5-0487-483b-a8ec-1ffa54a9d8d8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8d55d5ff-00d5-4473-a3f5-d51d063d721a"
],
"hmdb":[
"HMDB06236"
],
"inchi_key":[
"DTUQWGWMVIHBKE-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00601"
],
"metanetx.chemical":[
"MNXM473"
],
"reactome.compound":[
"500607"
],
"sabiork":[
"2112"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00464"
]
}
},
{
"id":"pacald_p",
"name":"Phenylacetaldehyde",
"compartment":"p",
"charge":0,
"formula":"C8H8O",
"notes":{
"original_bigg_ids":[
"pacald_p"
]
},
"annotation":{
"bigg.metabolite":[
"pacald"
],
"biocyc":[
"META:PHENYLACETALDEHYDE"
],
"chebi":[
"CHEBI:14778",
"CHEBI:25972",
"CHEBI:43163",
"CHEBI:16424",
"CHEBI:8084"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1df960d5-0487-483b-a8ec-1ffa54a9d8d8",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8d55d5ff-00d5-4473-a3f5-d51d063d721a"
],
"hmdb":[
"HMDB06236"
],
"inchi_key":[
"DTUQWGWMVIHBKE-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00601"
],
"metanetx.chemical":[
"MNXM473"
],
"reactome.compound":[
"500607"
],
"sabiork":[
"2112"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00464"
]
}
},
{
"id":"pheme_p",
"name":"Protoheme C34H30FeN4O4",
"compartment":"p",
"charge":-2,
"formula":"C34H30FeN4O4",
"notes":{
"original_bigg_ids":[
"pheme_p"
]
},
"annotation":{
"bigg.metabolite":[
"pheme"
],
"biocyc":[
"META:PROTOHEME"
],
"chebi":[
"CHEBI:60344",
"CHEBI:26355",
"CHEBI:17627",
"CHEBI:5651",
"CHEBI:14957"
],
"inchi_key":[
"KABFMIBPWCXCRK-RGGAHWMASA-J"
],
"kegg.compound":[
"C00032"
],
"metanetx.chemical":[
"MNXM249"
],
"reactome.compound":[
"917877",
"71185",
"189444"
],
"sbo":"SBO:0000247"
}
},
{
"id":"so2_p",
"name":"Sulfur dioxide",
"compartment":"p",
"charge":0,
"formula":"O2S",
"notes":{
"original_bigg_ids":[
"so2_p"
]
},
"annotation":{
"bigg.metabolite":[
"so2"
],
"biocyc":[
"META:SULFUR-DIOXIDE"
],
"chebi":[
"CHEBI:45789",
"CHEBI:18422",
"CHEBI:9351",
"CHEBI:8992"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/739d918d-f0e0-4b19-900c-7abb204b45c0"
],
"hmdb":[
"HMDB34834"
],
"inchi_key":[
"RAHZWNYVWXNFOC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C09306"
],
"kegg.drug":[
"D05961"
],
"metanetx.chemical":[
"MNXM4835"
],
"sabiork":[
"2804"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd06201"
]
}
},
{
"id":"phpyr_c",
"name":"Phenylpyruvate",
"compartment":"c",
"charge":-1,
"formula":"C9H7O3",
"notes":{
"original_bigg_ids":[
"phpyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"phpyr"
],
"biocyc":[
"META:PHENYL-PYRUVATE"
],
"chebi":[
"CHEBI:14784",
"CHEBI:26007",
"CHEBI:18005",
"CHEBI:12821"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/1a2c1780-502b-43c6-8d45-759953ea5e07"
],
"hmdb":[
"HMDB00205",
"HMDB31629",
"HMDB01237"
],
"inchi_key":[
"BTNMPGBKDVTSJY-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00166"
],
"metanetx.chemical":[
"MNXM162242"
],
"sabiork":[
"1957"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00143"
]
}
},
{
"id":"pnto__R_c",
"name":"(R)-Pantothenate",
"compartment":"c",
"charge":-1,
"formula":"C9H16NO5",
"notes":{
"original_bigg_ids":[
"pnto_R_c"
]
},
"annotation":{
"bigg.metabolite":[
"pnto__R"
],
"biocyc":[
"META:PANTOTHENATE"
],
"chebi":[
"CHEBI:29032",
"CHEBI:44679",
"CHEBI:25846",
"CHEBI:16454",
"CHEBI:18700",
"CHEBI:11008",
"CHEBI:18701",
"CHEBI:46905",
"CHEBI:14739",
"CHEBI:7916"
],
"hmdb":[
"HMDB00210",
"HMDB62717"
],
"inchi_key":[
"GHOKWGTUZJEAQD-ZETCQYMHSA-M"
],
"kegg.compound":[
"C00864"
],
"kegg.drug":[
"D07413"
],
"metanetx.chemical":[
"MNXM364"
],
"reactome.compound":[
"199192",
"196820"
],
"sabiork":[
"5286"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00644"
]
}
},
{
"id":"so4_p",
"name":"Sulfate",
"compartment":"p",
"charge":-2,
"formula":"O4S",
"notes":{
"original_bigg_ids":[
"so4_p"
]
},
"annotation":{
"bigg.metabolite":[
"so4"
],
"biocyc":[
"META:SULFATE",
"META:HSO4"
],
"chebi":[
"CHEBI:15135",
"CHEBI:45693",
"CHEBI:29199",
"CHEBI:9335",
"CHEBI:16189",
"CHEBI:45687",
"CHEBI:26836",
"CHEBI:45696"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/cf4fcd19-f2cb-4d92-aa67-323762e3b269"
],
"hmdb":[
"HMDB01448"
],
"inchi_key":[
"QAOWNCQODCNURD-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00059"
],
"kegg.drug":[
"D05963"
],
"metanetx.chemical":[
"MNXM58"
],
"reactome.compound":[
"174375",
"1606845",
"1609649",
"1614584",
"427648"
],
"sabiork":[
"1759"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29301",
"cpd00048"
]
}
},
{
"id":"pant__R_c",
"name":"(R)-Pantoate",
"compartment":"c",
"charge":-1,
"formula":"C6H11O4",
"notes":{
"original_bigg_ids":[
"pant_R_c"
]
},
"annotation":{
"bigg.metabolite":[
"pant__R"
],
"biocyc":[
"META:L-PANTOATE"
],
"chebi":[
"CHEBI:18696",
"CHEBI:350",
"CHEBI:18695",
"CHEBI:15980",
"CHEBI:18697",
"CHEBI:44662",
"CHEBI:11006",
"CHEBI:14737"
],
"inchi_key":[
"OTOIIPJYVQJATP-BYPYZUCNSA-M"
],
"kegg.compound":[
"C00522"
],
"metanetx.chemical":[
"MNXM593"
],
"sabiork":[
"21325",
"5130"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00408"
]
}
},
{
"id":"phetrna_c",
"name":"L-Phenylalanyl-tRNA(Phe)",
"compartment":"c",
"charge":1,
"formula":"C9H10NOR",
"notes":{
"original_bigg_ids":[
"phetrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"phetrna"
],
"chebi":[
"CHEBI:29153",
"CHEBI:13152",
"CHEBI:6283"
],
"kegg.compound":[
"C03511"
],
"metanetx.chemical":[
"MNXM89802"
],
"reactome.compound":[
"379789",
"379792"
],
"sabiork":[
"3867"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12335"
]
}
},
{
"id":"N1aspmd_c",
"name":"N1-Acetylspermidine",
"compartment":"c",
"charge":2,
"formula":"C9H23N3O",
"notes":{
"original_bigg_ids":[
"N1aspmd_c"
]
},
"annotation":{
"bigg.metabolite":[
"N1aspmd"
],
"biocyc":[
"META:CPD-568"
],
"chebi":[
"CHEBI:12625",
"CHEBI:58324",
"CHEBI:21798",
"CHEBI:17927",
"CHEBI:7356"
],
"hmdb":[
"HMDB01276"
],
"inchi_key":[
"MQTAVJHICJWXBR-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00612"
],
"metanetx.chemical":[
"MNXM501"
],
"reactome.compound":[
"353555",
"141349"
],
"sabiork":[
"5158"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00470"
]
}
},
{
"id":"trnaphe_c",
"name":"TRNA(Phe)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaphe_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaphe"
],
"biocyc":[
"META:PHE-tRNAs"
],
"chebi":[
"CHEBI:29184",
"CHEBI:15183",
"CHEBI:10687"
],
"kegg.compound":[
"C01648"
],
"metanetx.chemical":[
"MNXM90753"
],
"reactome.compound":[
"379767",
"379760"
],
"sabiork":[
"3847"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11919",
"cpd27782"
]
}
},
{
"id":"ugmda_c",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine",
"compartment":"c",
"charge":-4,
"formula":"C41H61N9O28P2",
"notes":{
"original_bigg_ids":[
"ugmda_c"
]
},
"annotation":{
"bigg.metabolite":[
"ugmda"
],
"biocyc":[
"META:C1"
],
"chebi":[
"CHEBI:61386",
"CHEBI:13462",
"CHEBI:9833",
"CHEBI:18199",
"CHEBI:22126"
],
"inchi_key":[
"IMWOXEZVYQDRDF-MCZXNMLPSA-J"
],
"kegg.compound":[
"C04882"
],
"metanetx.chemical":[
"MNXM1954"
],
"sabiork":[
"7645"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02932",
"cpd02968"
]
}
},
{
"id":"phe__L_p",
"name":"L-Phenylalanine",
"compartment":"p",
"charge":0,
"formula":"C9H11NO2",
"notes":{
"original_bigg_ids":[
"phe_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"phe__L"
],
"biocyc":[
"META:PHE"
],
"chebi":[
"CHEBI:21370",
"CHEBI:32505",
"CHEBI:13151",
"CHEBI:32504",
"CHEBI:32486",
"CHEBI:44885",
"CHEBI:58095",
"CHEBI:45079",
"CHEBI:28044",
"CHEBI:6282",
"CHEBI:32487",
"CHEBI:8089",
"CHEBI:76052",
"CHEBI:17295",
"CHEBI:25984",
"CHEBI:44851"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/447fdbbc-919c-4e8d-aed3-c0533f3e6047",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/c1b55d6f-7946-4f39-9dc6-ac0f47865b8b"
],
"hmdb":[
"HMDB00159",
"HMDB00612"
],
"inchi_key":[
"COLNVLDHVKWLRT-QMMMGPOBSA-N"
],
"kegg.compound":[
"C00079",
"C02057"
],
"kegg.drug":[
"D00021"
],
"metanetx.chemical":[
"MNXM97"
],
"reactome.compound":[
"29502",
"379701",
"351993"
],
"sabiork":[
"2365",
"83"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00066",
"cpd01400"
]
}
},
{
"id":"n8aspmd_c",
"name":"N8-Acetylspermidine",
"compartment":"c",
"charge":2,
"formula":"C9H23N3O",
"notes":{
"original_bigg_ids":[
"n8aspmd_c"
]
},
"annotation":{
"bigg.metabolite":[
"n8aspmd"
],
"biocyc":[
"META:CPD-3462"
],
"chebi":[
"CHEBI:58535",
"CHEBI:21900",
"CHEBI:27911",
"CHEBI:7420"
],
"hmdb":[
"HMDB60288",
"HMDB02189"
],
"inchi_key":[
"FONIWJIDLJEJTL-UHFFFAOYSA-P"
],
"kegg.compound":[
"C01029"
],
"metanetx.chemical":[
"MNXM1679"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00758"
]
}
},
{
"id":"4r5au_c",
"name":"4-(1-D-Ribitylamino)-5-aminouracil",
"compartment":"c",
"charge":0,
"formula":"C9H16N4O6",
"notes":{
"original_bigg_ids":[
"4r5au_c"
]
},
"annotation":{
"bigg.metabolite":[
"4r5au"
],
"biocyc":[
"META:AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE"
],
"chebi":[
"CHEBI:20283",
"CHEBI:11929",
"CHEBI:57573",
"CHEBI:1761",
"CHEBI:15934",
"CHEBI:52403"
],
"inchi_key":[
"XKQZIXVJVUPORE-RPDRRWSUSA-N"
],
"kegg.compound":[
"C04732"
],
"metanetx.chemical":[
"MNXM791"
],
"sabiork":[
"7525"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29668",
"cpd02882"
]
}
},
{
"id":"uagmda_c",
"name":"Undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine",
"compartment":"c",
"charge":-4,
"formula":"C87H139N7O23P2",
"notes":{
"original_bigg_ids":[
"uagmda_c"
]
},
"annotation":{
"bigg.metabolite":[
"uagmda"
],
"biocyc":[
"META:C5"
],
"chebi":[
"CHEBI:61387",
"CHEBI:61543"
],
"inchi_key":[
"PNWZQTONLRRPST-KLDRQJOASA-J"
],
"kegg.compound":[
"C05897"
],
"kegg.glycan":[
"G10556"
],
"metanetx.chemical":[
"MNXM2264"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03494"
]
}
},
{
"id":"spmd_p",
"name":"Spermidine",
"compartment":"p",
"charge":3,
"formula":"C7H22N3",
"notes":{
"original_bigg_ids":[
"spmd_p"
]
},
"annotation":{
"bigg.metabolite":[
"spmd"
],
"biocyc":[
"META:SPERMIDINE"
],
"chebi":[
"CHEBI:57834",
"CHEBI:15097",
"CHEBI:26732",
"CHEBI:26733",
"CHEBI:9218",
"CHEBI:45647",
"CHEBI:15095",
"CHEBI:16610"
],
"hmdb":[
"HMDB01257"
],
"inchi_key":[
"ATHGHQPFGPMSJY-UHFFFAOYSA-Q"
],
"kegg.compound":[
"C00315"
],
"metanetx.chemical":[
"MNXM124"
],
"reactome.compound":[
"204635",
"141324"
],
"sabiork":[
"3088"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00264"
]
}
},
{
"id":"pdx5p_c",
"name":"Pyridoxine 5'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C8H10NO6P",
"notes":{
"original_bigg_ids":[
"pdx5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"pdx5p"
],
"biocyc":[
"META:PYRIDOXINE-5P"
],
"chebi":[
"CHEBI:26430",
"CHEBI:28803",
"CHEBI:45202",
"CHEBI:58589",
"CHEBI:8672"
],
"hmdb":[
"HMDB01319"
],
"inchi_key":[
"WHOMFKWHIQZTHY-UHFFFAOYSA-L"
],
"kegg.compound":[
"C00627"
],
"metanetx.chemical":[
"MNXM454"
],
"reactome.compound":[
"964952"
],
"sabiork":[
"1684"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00478"
]
}
},
{
"id":"pydxn_c",
"name":"Pyridoxine",
"compartment":"c",
"charge":0,
"formula":"C8H11NO3",
"notes":{
"original_bigg_ids":[
"pydxn_c"
]
},
"annotation":{
"bigg.metabolite":[
"pydxn"
],
"biocyc":[
"META:PYRIDOXINE"
],
"chebi":[
"CHEBI:14981",
"CHEBI:26429",
"CHEBI:16709",
"CHEBI:8671"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/344a84bd-2fbd-4e3b-903e-556786d111e2"
],
"hmdb":[
"HMDB02075",
"HMDB00239"
],
"inchi_key":[
"LXNHXLLTXMVWPM-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00314"
],
"kegg.drug":[
"D08454"
],
"metanetx.chemical":[
"MNXM419"
],
"reactome.compound":[
"965053"
],
"sabiork":[
"2015"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00263"
]
}
},
{
"id":"4ppan_c",
"name":"D-4'-Phosphopantothenate",
"compartment":"c",
"charge":-3,
"formula":"C9H15NO8P",
"notes":{
"original_bigg_ids":[
"4ppan_c"
]
},
"annotation":{
"bigg.metabolite":[
"4ppan"
],
"biocyc":[
"META:4-P-PANTOTHENATE"
],
"chebi":[
"CHEBI:20891",
"CHEBI:15905",
"CHEBI:4082",
"CHEBI:12886",
"CHEBI:18702",
"CHEBI:10986"
],
"hmdb":[
"HMDB01016",
"HMDB62700"
],
"inchi_key":[
"XHFVGHPGDLDEQO-ZETCQYMHSA-K"
],
"kegg.compound":[
"C03492"
],
"metanetx.chemical":[
"MNXM415"
],
"reactome.compound":[
"196786"
],
"sabiork":[
"6663"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02201"
]
}
},
{
"id":"sucbz_c",
"name":"O-Succinylbenzoate",
"compartment":"c",
"charge":-2,
"formula":"C11H8O5",
"notes":{
"original_bigg_ids":[
"sucbz_c"
]
},
"annotation":{
"bigg.metabolite":[
"sucbz"
],
"biocyc":[
"META:O-SUCCINYLBENZOATE"
],
"chebi":[
"CHEBI:44788",
"CHEBI:37026",
"CHEBI:44787",
"CHEBI:18325",
"CHEBI:12835",
"CHEBI:1278",
"CHEBI:19778"
],
"inchi_key":[
"YIVWQNVQRXFZJB-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02730"
],
"metanetx.chemical":[
"MNXM1212"
],
"sabiork":[
"2510"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01772"
]
}
},
{
"id":"pnto__R_p",
"name":"(R)-Pantothenate",
"compartment":"p",
"charge":-1,
"formula":"C9H16NO5",
"notes":{
"original_bigg_ids":[
"pnto_R_p"
]
},
"annotation":{
"bigg.metabolite":[
"pnto__R"
],
"biocyc":[
"META:PANTOTHENATE"
],
"chebi":[
"CHEBI:29032",
"CHEBI:44679",
"CHEBI:25846",
"CHEBI:16454",
"CHEBI:18700",
"CHEBI:11008",
"CHEBI:18701",
"CHEBI:46905",
"CHEBI:14739",
"CHEBI:7916"
],
"hmdb":[
"HMDB00210",
"HMDB62717"
],
"inchi_key":[
"GHOKWGTUZJEAQD-ZETCQYMHSA-M"
],
"kegg.compound":[
"C00864"
],
"kegg.drug":[
"D07413"
],
"metanetx.chemical":[
"MNXM364"
],
"reactome.compound":[
"199192",
"196820"
],
"sabiork":[
"5286"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00644"
]
}
},
{
"id":"pe120_p",
"name":"Phosphatidylethanolamine (didodecanoyl, n-C12:0)",
"compartment":"p",
"charge":0,
"formula":"C29H58N1O8P1",
"notes":{
"original_bigg_ids":[
"pe120_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe120"
],
"biocyc":[
"META:CPD-17088"
],
"lipidmaps":[
"LMGP02010098"
],
"metanetx.chemical":[
"MNXM2858"
],
"sbo":"SBO:0000247",
"slm":[
"000034904"
]
}
},
{
"id":"sucr_p",
"name":"Sucrose C12H22O11",
"compartment":"p",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"sucr_p"
]
},
"annotation":{
"bigg.metabolite":[
"sucr"
],
"biocyc":[
"META:SUCROSE"
],
"chebi":[
"CHEBI:9314",
"CHEBI:15128",
"CHEBI:17992",
"CHEBI:45795",
"CHEBI:26812"
],
"hmdb":[
"HMDB00258"
],
"inchi_key":[
"CZMRCDWAGMRECN-UGDNZRGBSA-N"
],
"kegg.compound":[
"C00089"
],
"kegg.drug":[
"D00025"
],
"kegg.glycan":[
"G00370"
],
"metanetx.chemical":[
"MNXM167"
],
"reactome.compound":[
"188980"
],
"sabiork":[
"1294"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00076"
]
}
},
{
"id":"ppap_c",
"name":"Propanoyl phosphate",
"compartment":"c",
"charge":-2,
"formula":"C3H5O5P",
"notes":{
"original_bigg_ids":[
"ppap_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppap"
],
"biocyc":[
"META:PROPIONYL-P"
],
"chebi":[
"CHEBI:58933",
"CHEBI:8478"
],
"inchi_key":[
"FMNMEQSRDWIBFO-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02876"
],
"metanetx.chemical":[
"MNXM1499"
],
"sabiork":[
"1724"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01844"
]
}
},
{
"id":"sulfac_p",
"name":"Sulfoacetate",
"compartment":"p",
"charge":-2,
"formula":"C2H2O5S",
"notes":{
"original_bigg_ids":[
"sulfac_p"
]
},
"annotation":{
"bigg.metabolite":[
"sulfac"
],
"biocyc":[
"META:CPD-10246"
],
"chebi":[
"CHEBI:34987",
"CHEBI:49876",
"CHEBI:58824",
"CHEBI:50519"
],
"inchi_key":[
"AGGIJOLULBJGTQ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C14179"
],
"metanetx.chemical":[
"MNXM1949"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd09878"
]
}
},
{
"id":"ppal_p",
"name":"Propanal",
"compartment":"p",
"charge":0,
"formula":"C3H6O",
"notes":{
"original_bigg_ids":[
"ppal_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppal"
],
"biocyc":[
"META:CPD-665"
],
"chebi":[
"CHEBI:45052",
"CHEBI:26281",
"CHEBI:17153",
"CHEBI:41359",
"CHEBI:8468",
"CHEBI:14898"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/de9fac76-182f-497b-8590-df8d5d8e2580",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/deea3c6f-bf3e-49db-ad6d-a405caf96fdd"
],
"hmdb":[
"HMDB03366"
],
"inchi_key":[
"NBBJYMSMWIIQGU-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00479"
],
"metanetx.chemical":[
"MNXM821"
],
"sabiork":[
"2056"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00371"
]
}
},
{
"id":"ppa_p",
"name":"Propionate (n-C3:0)",
"compartment":"p",
"charge":-1,
"formula":"C3H5O2",
"notes":{
"original_bigg_ids":[
"ppa_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppa"
],
"metanetx.chemical":[
"MNXM162260"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tartr__L_p",
"name":"L-tartrate",
"compartment":"p",
"charge":-2,
"formula":"C4H4O6",
"notes":{
"original_bigg_ids":[
"tartr_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"tartr__L"
],
"biocyc":[
"META:TARTRATE"
],
"chebi":[
"CHEBI:15193",
"CHEBI:10961",
"CHEBI:30924",
"CHEBI:35397",
"CHEBI:35398",
"CHEBI:358",
"CHEBI:45866",
"CHEBI:18711",
"CHEBI:15671",
"CHEBI:26849",
"CHEBI:11018",
"CHEBI:18710"
],
"hmdb":[
"HMDB00956"
],
"inchi_key":[
"FEWJPZIEWOKRBE-JCYAYHJZSA-L"
],
"kegg.compound":[
"C00898"
],
"kegg.drug":[
"D00103"
],
"metanetx.chemical":[
"MNXM816"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00666"
]
}
},
{
"id":"pan4p_c",
"name":"Pantetheine 4'-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C11H21N2O7PS",
"notes":{
"original_bigg_ids":[
"pan4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"pan4p"
],
"biocyc":[
"META:PHOSPHOPANTOTHEINE-GROUP",
"META:PANTETHEINE-P"
],
"chebi":[
"CHEBI:14738",
"CHEBI:11916",
"CHEBI:14736",
"CHEBI:7914",
"CHEBI:45012",
"CHEBI:14825",
"CHEBI:47942",
"CHEBI:14735",
"CHEBI:4222",
"CHEBI:29890",
"CHEBI:61723",
"CHEBI:16858",
"CHEBI:25844"
],
"hmdb":[
"HMDB01416"
],
"inchi_key":[
"JDMUPRLRUUMCTL-VIFPVBQESA-L"
],
"kegg.compound":[
"C01134"
],
"metanetx.chemical":[
"MNXM373"
],
"reactome.compound":[
"196767",
"8939005",
"6809358"
],
"sabiork":[
"3034"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd27792",
"cpd00834"
]
}
},
{
"id":"copre3_c",
"name":"Cobalt-precorrin 3",
"compartment":"c",
"charge":-7,
"formula":"C43H41CoN4O16",
"notes":{
"original_bigg_ids":[
"codscl3_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre3"
],
"biocyc":[
"META:CPD-9040"
],
"chebi":[
"CHEBI:3791",
"CHEBI:60060"
],
"inchi_key":[
"FKTVLCPLZMVWHD-LPFAUARPSA-E"
],
"kegg.compound":[
"C11539"
],
"metanetx.chemical":[
"MNXM92204"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08369"
]
}
},
{
"id":"taur_p",
"name":"Taurine C2H7NO3S",
"compartment":"p",
"charge":0,
"formula":"C2H7NO3S",
"notes":{
"original_bigg_ids":[
"taur_p"
]
},
"annotation":{
"bigg.metabolite":[
"taur"
],
"biocyc":[
"META:TAURINE"
],
"chebi":[
"CHEBI:32970",
"CHEBI:507393",
"CHEBI:9406",
"CHEBI:26852",
"CHEBI:15891",
"CHEBI:15195",
"CHEBI:45877"
],
"hmdb":[
"HMDB00251"
],
"inchi_key":[
"XOAAWQZATWQOTB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00245"
],
"kegg.drug":[
"D00047"
],
"metanetx.chemical":[
"MNXM282"
],
"reactome.compound":[
"193463",
"194069",
"159420"
],
"sabiork":[
"1989"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00210"
]
}
},
{
"id":"4ppcys_c",
"name":"N-((R)-4-Phosphopantothenoyl)-L-cysteine",
"compartment":"c",
"charge":-3,
"formula":"C12H20N2O9PS",
"notes":{
"original_bigg_ids":[
"4ppcys_c"
]
},
"annotation":{
"bigg.metabolite":[
"4ppcys"
],
"biocyc":[
"META:R-4-PHOSPHOPANTOTHENOYL-L-CYSTEINE"
],
"chebi":[
"CHEBI:15769",
"CHEBI:12438",
"CHEBI:10987",
"CHEBI:57507",
"CHEBI:59458",
"CHEBI:328",
"CHEBI:21461"
],
"hmdb":[
"HMDB01117"
],
"inchi_key":[
"XQYALQVLCNHCFT-CBAPKCEASA-K"
],
"kegg.compound":[
"C04352"
],
"metanetx.chemical":[
"MNXM483"
],
"reactome.compound":[
"196834"
],
"sabiork":[
"7255"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02666"
]
}
},
{
"id":"thmmp_c",
"name":"Thiamin monophosphate",
"compartment":"c",
"charge":-1,
"formula":"C12H16N4O4PS",
"notes":{
"original_bigg_ids":[
"thmmp_c"
]
},
"annotation":{
"bigg.metabolite":[
"thmmp"
],
"biocyc":[
"META:THIAMINE-P"
],
"chebi":[
"CHEBI:9533",
"CHEBI:37574",
"CHEBI:15230",
"CHEBI:46189",
"CHEBI:26945",
"CHEBI:37575",
"CHEBI:15231"
],
"hmdb":[
"HMDB02666"
],
"inchi_key":[
"HZSAJDVWZRBGIF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01081"
],
"metanetx.chemical":[
"MNXM662"
],
"sabiork":[
"1698"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00793"
]
}
},
{
"id":"r1p_c",
"name":"Alpha-D-Ribose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"r1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"r1p"
],
"biocyc":[
"META:RIBOSE-1P"
],
"chebi":[
"CHEBI:16300",
"CHEBI:12330",
"CHEBI:45482",
"CHEBI:22412",
"CHEBI:10269",
"CHEBI:57720",
"CHEBI:45429",
"CHEBI:12329"
],
"hmdb":[
"HMDB01489"
],
"inchi_key":[
"YXJDFQJKERBOBM-TXICZTDVSA-L"
],
"kegg.compound":[
"C00620"
],
"metanetx.chemical":[
"MNXM295"
],
"reactome.compound":[
"112016"
],
"sabiork":[
"1651",
"1337"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00475"
]
}
},
{
"id":"copre4_c",
"name":"Cobalt-precorrin 4",
"compartment":"c",
"charge":-6,
"formula":"C44H44CoN4O16",
"notes":{
"original_bigg_ids":[
"codscl4_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre4"
],
"biocyc":[
"META:CPD-9041"
],
"chebi":[
"CHEBI:3792",
"CHEBI:60061"
],
"inchi_key":[
"VHHGJROBFDFFAE-QTESGACZSA-F"
],
"kegg.compound":[
"C11540"
],
"metanetx.chemical":[
"MNXM2361"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08370"
]
}
},
{
"id":"codscl5a_c",
"name":"Cobalt-precorrin-5a",
"compartment":"c",
"charge":-6,
"formula":"C45H46CoN4O16",
"notes":{
"original_bigg_ids":[
"codscl5a_c"
]
},
"annotation":{
"bigg.metabolite":[
"codscl5a"
],
"biocyc":[
"META:CPD-9042"
],
"chebi":[
"CHEBI:60062",
"CHEBI:52488"
],
"inchi_key":[
"FMPRUTAGAUSVOA-IBAGIMPYSA-E"
],
"kegg.compound":[
"C16242"
],
"metanetx.chemical":[
"MNXM2508"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19177"
]
}
},
{
"id":"34hpp_c",
"name":"3-(4-Hydroxyphenyl)pyruvate",
"compartment":"c",
"charge":-1,
"formula":"C9H7O4",
"notes":{
"original_bigg_ids":[
"34hpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"34hpp"
],
"biocyc":[
"META:P-HYDROXY-PHENYLPYRUVATE"
],
"chebi":[
"CHEBI:36242",
"CHEBI:20425",
"CHEBI:20426",
"CHEBI:12016",
"CHEBI:15999",
"CHEBI:11725",
"CHEBI:594665",
"CHEBI:11727",
"CHEBI:42422",
"CHEBI:1431"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/f2e806ef-76ea-4ddf-bf89-db7737caa79b"
],
"hmdb":[
"HMDB00707"
],
"inchi_key":[
"KKADPXVIOXHVKN-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01179"
],
"metanetx.chemical":[
"MNXM153"
],
"reactome.compound":[
"31365"
],
"sabiork":[
"5423"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00868"
]
}
},
{
"id":"dtdp4aaddg_c",
"name":"DTDP-4-acetamido-4,6-dideoxy-D-galactose",
"compartment":"c",
"charge":-2,
"formula":"C18H27N3O15P2",
"notes":{
"original_bigg_ids":[
"dtdp4aaddg_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdp4aaddg"
],
"biocyc":[
"META:TDP-FUC4NAC"
],
"chebi":[
"CHEBI:68493",
"CHEBI:61661",
"CHEBI:61562",
"CHEBI:68518"
],
"hmdb":[
"HMDB12222"
],
"inchi_key":[
"YHXQWYBLXUELDA-ZCVKINLTSA-L"
],
"kegg.compound":[
"C20415"
],
"metanetx.chemical":[
"MNXM3015"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15454"
]
}
},
{
"id":"pphn_c",
"name":"Prephenate",
"compartment":"c",
"charge":-2,
"formula":"C10H8O6",
"notes":{
"original_bigg_ids":[
"pphn_c"
]
},
"annotation":{
"bigg.metabolite":[
"pphn"
],
"biocyc":[
"META:PREPHENATE"
],
"chebi":[
"CHEBI:8399",
"CHEBI:29934",
"CHEBI:45028",
"CHEBI:84387",
"CHEBI:57852",
"CHEBI:26257",
"CHEBI:26256",
"CHEBI:16666",
"CHEBI:14884"
],
"hmdb":[
"HMDB12283"
],
"inchi_key":[
"FPWMCUPFBRFMLH-XGAOUMNUSA-L"
],
"kegg.compound":[
"C00254"
],
"metanetx.chemical":[
"MNXM503"
],
"sabiork":[
"1995"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00219"
]
}
},
{
"id":"codscl5b_c",
"name":"Cobalt-precorrin-5b",
"compartment":"c",
"charge":-7,
"formula":"C43H43CoN4O16",
"notes":{
"original_bigg_ids":[
"codscl5b_c"
]
},
"annotation":{
"bigg.metabolite":[
"codscl5b"
],
"biocyc":[
"META:CPD-9047"
],
"chebi":[
"CHEBI:60063",
"CHEBI:52489"
],
"inchi_key":[
"XHLLHKIBBMZXKO-NXQAVURYSA-D"
],
"kegg.compound":[
"C16243"
],
"metanetx.chemical":[
"MNXM47439"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14960"
]
}
},
{
"id":"copre6_c",
"name":"Cobalt-precorrin 6",
"compartment":"c",
"charge":-7,
"formula":"C44H45CoN4O16",
"notes":{
"original_bigg_ids":[
"codscl6a_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre6"
],
"inchi_key":[
"DFFFCFUPOVLDTP-IICGDJHVSA-N"
],
"kegg.compound":[
"C11542"
],
"metanetx.chemical":[
"MNXM91523"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08372"
]
}
},
{
"id":"dtdp4addg_c",
"name":"DTDP-4-amino-4,6-dideoxy-D-galactose",
"compartment":"c",
"charge":-1,
"formula":"C16H26N3O14P2",
"notes":{
"original_bigg_ids":[
"dtdp4addg_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdp4addg"
],
"biocyc":[
"META:TDP-D-FUCOSAMINE"
],
"chebi":[
"CHEBI:23539",
"CHEBI:10507",
"CHEBI:68492",
"CHEBI:68516",
"CHEBI:15972",
"CHEBI:57596",
"CHEBI:14078"
],
"inchi_key":[
"UIVJXHWSIFBBCY-WDQPOOCWSA-M"
],
"kegg.compound":[
"C04346"
],
"metanetx.chemical":[
"MNXM114295"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd24124",
"cpd02661"
]
}
},
{
"id":"codhpre6_c",
"name":"Cobalt-dihydro-precorrin 6",
"compartment":"c",
"charge":-7,
"formula":"C44H47CoN4O16",
"notes":{
"original_bigg_ids":[
"codscl6b_c"
]
},
"annotation":{
"bigg.metabolite":[
"codhpre6"
],
"biocyc":[
"META:CPD-9044"
],
"chebi":[
"CHEBI:72780",
"CHEBI:3789"
],
"inchi_key":[
"RFBIUXAOZAPWCC-RDKWKEIWSA-E"
],
"kegg.compound":[
"C11543"
],
"metanetx.chemical":[
"MNXM2653"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08373"
]
}
},
{
"id":"pppn_c",
"name":"Phenylpropanoate",
"compartment":"c",
"charge":-1,
"formula":"C9H9O2",
"notes":{
"original_bigg_ids":[
"pppn_c"
]
},
"annotation":{
"bigg.metabolite":[
"pppn"
],
"biocyc":[
"META:3-PHENYLPROPIONATE"
],
"chebi":[
"CHEBI:20187",
"CHEBI:20186",
"CHEBI:51057",
"CHEBI:8103",
"CHEBI:26005",
"CHEBI:28631",
"CHEBI:26002",
"CHEBI:43112"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/30aa6284-bd6a-41ed-b40d-bdbb4fb60d5f",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/515e549e-edf3-4c3e-b898-1f1754d887f6"
],
"hmdb":[
"HMDB00764"
],
"inchi_key":[
"XMIIGOLPHOKFCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05629"
],
"metanetx.chemical":[
"MNXM1403"
],
"sabiork":[
"20964"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03343"
]
}
},
{
"id":"pppn_p",
"name":"Phenylpropanoate",
"compartment":"p",
"charge":-1,
"formula":"C9H9O2",
"notes":{
"original_bigg_ids":[
"pppn_p"
]
},
"annotation":{
"bigg.metabolite":[
"pppn"
],
"biocyc":[
"META:3-PHENYLPROPIONATE"
],
"chebi":[
"CHEBI:20187",
"CHEBI:20186",
"CHEBI:51057",
"CHEBI:8103",
"CHEBI:26005",
"CHEBI:28631",
"CHEBI:26002",
"CHEBI:43112"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/30aa6284-bd6a-41ed-b40d-bdbb4fb60d5f",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/515e549e-edf3-4c3e-b898-1f1754d887f6"
],
"hmdb":[
"HMDB00764"
],
"inchi_key":[
"XMIIGOLPHOKFCH-UHFFFAOYSA-M"
],
"kegg.compound":[
"C05629"
],
"metanetx.chemical":[
"MNXM1403"
],
"sabiork":[
"20964"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03343"
]
}
},
{
"id":"dtdp4d6dg_c",
"name":"DTDP-4-dehydro-6-deoxy-D-glucose",
"compartment":"c",
"charge":-2,
"formula":"C16H22N2O15P2",
"notes":{
"original_bigg_ids":[
"dtdp4d6dg_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdp4d6dg"
],
"biocyc":[
"META:DTDP-DEOH-DEOXY-GLUCOSE"
],
"chebi":[
"CHEBI:14081",
"CHEBI:62829",
"CHEBI:10510",
"CHEBI:57649",
"CHEBI:16128",
"CHEBI:23542"
],
"hmdb":[
"HMDB60081"
],
"inchi_key":[
"PSXWNITXWWECNY-UCBTUHGZSA-L"
],
"kegg.compound":[
"C11907"
],
"metanetx.chemical":[
"MNXM451"
],
"sabiork":[
"1563"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00521"
]
}
},
{
"id":"ppt_p",
"name":"Phosphonate",
"compartment":"p",
"charge":-2,
"formula":"HO3P",
"notes":{
"original_bigg_ids":[
"ppt_p"
]
},
"annotation":{
"bigg.metabolite":[
"ppt"
],
"biocyc":[
"META:PHOSPHONATE",
"META:CPD-12755",
"META:CPD-12756",
"META:X-PHOSPHATE-GROUP"
],
"chebi":[
"CHEBI:29196",
"CHEBI:33462",
"CHEBI:44976",
"CHEBI:26066",
"CHEBI:26081",
"CHEBI:29197",
"CHEBI:16215",
"CHEBI:8154",
"CHEBI:29258",
"CHEBI:39856",
"CHEBI:14820",
"CHEBI:29259",
"CHEBI:45064",
"CHEBI:26067",
"CHEBI:36361",
"CHEBI:45060"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/476ae429-68f2-4547-b4ce-baad8ab3bc26",
"5882df9c-dae1-4d80-a40e-db4724271456/compound/cc4b0b2a-ff3d-4f32-bb67-58801f122f27",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fce7e49c-1b66-4eb2-b13a-154386e984fa"
],
"hmdb":[
"HMDB01443"
],
"inchi_key":[
"ABLZXFCXXLZCGV-UHFFFAOYSA-L"
],
"kegg.compound":[
"C06701"
],
"metanetx.chemical":[
"MNXM1683"
],
"sabiork":[
"2905"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28344",
"cpd04099"
]
}
},
{
"id":"codscl7_c",
"name":"Cobalt-precorrin-7",
"compartment":"c",
"charge":-7,
"formula":"C45H49CoN4O16",
"notes":{
"original_bigg_ids":[
"codscl7_c"
]
},
"annotation":{
"bigg.metabolite":[
"codscl7"
],
"biocyc":[
"META:CPD-9048"
],
"chebi":[
"CHEBI:70791",
"CHEBI:52490"
],
"inchi_key":[
"GPKQHTAVLDBECX-HDPLZVLRSA-F"
],
"kegg.compound":[
"C16244"
],
"metanetx.chemical":[
"MNXM47444"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14961"
]
}
},
{
"id":"dtdp4d6dm_c",
"name":"DTDP-4-dehydro-6-deoxy-L-mannose",
"compartment":"c",
"charge":-2,
"formula":"C16H22N2O15P2",
"notes":{
"original_bigg_ids":[
"dtdp4d6dm_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdp4d6dm"
],
"biocyc":[
"META:DTDP-DEOH-DEOXY-MANNOSE"
],
"chebi":[
"CHEBI:10511",
"CHEBI:15744",
"CHEBI:14082",
"CHEBI:45868",
"CHEBI:23543",
"CHEBI:57494",
"CHEBI:62830"
],
"inchi_key":[
"PSXWNITXWWECNY-LPVGZGSHSA-L"
],
"kegg.compound":[
"C00688"
],
"metanetx.chemical":[
"MNXM2371"
],
"sabiork":[
"1564"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08300",
"cpd00522"
]
}
},
{
"id":"codscl8x_c",
"name":"Cobalt-precorrin-8x",
"compartment":"c",
"charge":-6,
"formula":"C45H52CoN4O14",
"notes":{
"original_bigg_ids":[
"codscl8x_c"
]
},
"annotation":{
"bigg.metabolite":[
"codscl8x"
],
"biocyc":[
"META:CPD-9045"
],
"chebi":[
"CHEBI:3795",
"CHEBI:70792"
],
"inchi_key":[
"DPVDDBUQBNNVPO-WTEINHRPSA-F"
],
"kegg.compound":[
"C11545"
],
"metanetx.chemical":[
"MNXM145761"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08375"
]
}
},
{
"id":"cobya_c",
"name":"Cobyrinate",
"compartment":"c",
"charge":-6,
"formula":"C45H52CoN4O14",
"notes":{
"original_bigg_ids":[
"cobn_c"
]
},
"annotation":{
"bigg.metabolite":[
"cobya"
],
"biocyc":[
"META:CPD-9049"
],
"chebi":[
"CHEBI:58894",
"CHEBI:52499"
],
"inchi_key":[
"ZRAQEEAQQLYOBK-OKJGWHJPSA-F"
],
"kegg.compound":[
"C05773"
],
"metanetx.chemical":[
"MNXM92210"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fpram_c",
"name":"2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine",
"compartment":"c",
"charge":-1,
"formula":"C8H15N3O8P",
"notes":{
"original_bigg_ids":[
"fpram_c"
]
},
"annotation":{
"bigg.metabolite":[
"fpram"
],
"chebi":[
"CHEBI:18413",
"CHEBI:58478",
"CHEBI:971",
"CHEBI:11474"
],
"hmdb":[
"HMDB06211"
],
"inchi_key":[
"PMCOGCVKOAOZQM-ZRTZXPPTSA-M"
],
"metanetx.chemical":[
"MNXM479745"
],
"reactome.compound":[
"111369"
],
"sbo":"SBO:0000247"
}
},
{
"id":"thm_c",
"name":"Thiamin",
"compartment":"c",
"charge":1,
"formula":"C12H17N4OS",
"notes":{
"original_bigg_ids":[
"thm_c"
]
},
"annotation":{
"bigg.metabolite":[
"thm"
],
"chebi":[
"CHEBI:33283"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d00080d5-971d-4e5f-973a-226a589d76df"
],
"inchi_key":[
"MYVIATVLJGTBFV-UHFFFAOYSA-M"
],
"kegg.drug":[
"D08580"
],
"metanetx.chemical":[
"MNXM161565"
],
"sabiork":[
"2032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00305"
]
}
},
{
"id":"prbamp_c",
"name":"1-(5-Phosphoribosyl)-AMP",
"compartment":"c",
"charge":-4,
"formula":"C15H19N5O14P2",
"notes":{
"original_bigg_ids":[
"prbamp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prbamp"
],
"biocyc":[
"META:PHOSPHORIBOSYL-AMP"
],
"chebi":[
"CHEBI:7354",
"CHEBI:11195",
"CHEBI:37522",
"CHEBI:59457",
"CHEBI:18374",
"CHEBI:8166",
"CHEBI:20628"
],
"hmdb":[
"HMDB12276"
],
"inchi_key":[
"RTQMRTSPTLIIHM-KEOHHSTQSA-J"
],
"kegg.compound":[
"C02741"
],
"metanetx.chemical":[
"MNXM1515"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01777"
]
}
},
{
"id":"cob2nda_c",
"name":"Cob-II-yrinate-a-c-diamide",
"compartment":"c",
"charge":-4,
"formula":"C45H56CoN6O12",
"notes":{
"original_bigg_ids":[
"cob2nda_c"
]
},
"annotation":{
"bigg.metabolite":[
"cob2nda"
],
"metanetx.chemical":[
"MNXM148164"
],
"sbo":"SBO:0000247"
}
},
{
"id":"thm_p",
"name":"Thiamin",
"compartment":"p",
"charge":1,
"formula":"C12H17N4OS",
"notes":{
"original_bigg_ids":[
"thm_p"
]
},
"annotation":{
"bigg.metabolite":[
"thm"
],
"chebi":[
"CHEBI:33283"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d00080d5-971d-4e5f-973a-226a589d76df"
],
"inchi_key":[
"MYVIATVLJGTBFV-UHFFFAOYSA-M"
],
"kegg.drug":[
"D08580"
],
"metanetx.chemical":[
"MNXM161565"
],
"sabiork":[
"2032"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00305"
]
}
},
{
"id":"cob1nda_c",
"name":"Cob-I-yrinate-a-c-diamide",
"compartment":"c",
"charge":-5,
"formula":"C45H56CoN6O12",
"notes":{
"original_bigg_ids":[
"cob1nda_c"
]
},
"annotation":{
"bigg.metabolite":[
"cob1nda"
],
"metanetx.chemical":[
"MNXM147452"
],
"sbo":"SBO:0000247"
}
},
{
"id":"prfp_c",
"name":"1-(5-Phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide",
"compartment":"c",
"charge":-4,
"formula":"C15H21N5O15P2",
"notes":{
"original_bigg_ids":[
"prfp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prfp"
],
"biocyc":[
"META:PHOSPHORIBOSYL-FORMIMINO-AICAR-P"
],
"chebi":[
"CHEBI:11194",
"CHEBI:75912",
"CHEBI:58435",
"CHEBI:2020",
"CHEBI:20528",
"CHEBI:18302"
],
"hmdb":[
"HMDB12277"
],
"inchi_key":[
"QOUSHGMTBIIAHR-KEOHHSTQSA-J"
],
"kegg.compound":[
"C04896"
],
"metanetx.chemical":[
"MNXM1397"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02979"
]
}
},
{
"id":"thrtrna_c",
"name":"L-Threonyl-tRNA(Thr)",
"compartment":"c",
"charge":1,
"formula":"C4H8NO2R",
"notes":{
"original_bigg_ids":[
"thrtrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"thrtrna"
],
"chebi":[
"CHEBI:6309",
"CHEBI:29163",
"CHEBI:13176"
],
"kegg.compound":[
"C02992"
],
"metanetx.chemical":[
"MNXM89895"
],
"reactome.compound":[
"379783",
"379779"
],
"sabiork":[
"3804"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12229"
]
}
},
{
"id":"progly_p",
"name":"L-Prolinylglycine",
"compartment":"p",
"charge":0,
"formula":"C7H12N2O3",
"notes":{
"original_bigg_ids":[
"progly_p"
]
},
"annotation":{
"bigg.metabolite":[
"progly"
],
"biocyc":[
"META:CPD0-2182"
],
"chebi":[
"CHEBI:61696",
"CHEBI:61695",
"CHEBI:73594"
],
"inchi_key":[
"RNKSNIBMTUYWSH-YFKPBYRVSA-N"
],
"metanetx.chemical":[
"MNXM7481"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15551"
]
}
},
{
"id":"adcob1nda_c",
"name":"Adenosyl-cobyrinate-a-c-diamide",
"compartment":"c",
"charge":-4,
"formula":"C55H68CoN11O15",
"notes":{
"original_bigg_ids":[
"adcob1nda_c"
]
},
"annotation":{
"bigg.metabolite":[
"adcob1nda"
],
"metanetx.chemical":[
"MNXM147427"
],
"sbo":"SBO:0000247"
}
},
{
"id":"trnathr_c",
"name":"TRNA(Thr)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnathr_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnathr"
],
"biocyc":[
"META:THR-tRNAs"
],
"chebi":[
"CHEBI:29180",
"CHEBI:10690",
"CHEBI:15187"
],
"kegg.compound":[
"C01651"
],
"metanetx.chemical":[
"MNXM90883"
],
"reactome.compound":[
"379791",
"379749"
],
"sabiork":[
"3803"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11922",
"cpd28225"
]
}
},
{
"id":"adcobn_c",
"name":"Adenosylcobyric-acid",
"compartment":"c",
"charge":0,
"formula":"C55H76CoN15O11",
"notes":{
"original_bigg_ids":[
"adcobn_c"
]
},
"annotation":{
"bigg.metabolite":[
"adcobn"
],
"metanetx.chemical":[
"MNXM148036"
],
"sbo":"SBO:0000247"
}
},
{
"id":"thrp_c",
"name":"L-Threonine O-3-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C4H8NO6P",
"notes":{
"original_bigg_ids":[
"thrp_c"
]
},
"annotation":{
"bigg.metabolite":[
"thrp"
],
"biocyc":[
"META:L-THREONINE-O-3-PHOSPHATE"
],
"chebi":[
"CHEBI:58675",
"CHEBI:45955",
"CHEBI:37525",
"CHEBI:31757",
"CHEBI:21967"
],
"hmdb":[
"HMDB11185"
],
"inchi_key":[
"USRGIUJOYOXOQJ-GBXIJSLDSA-L"
],
"kegg.compound":[
"C12147"
],
"metanetx.chemical":[
"MNXM1492"
],
"sabiork":[
"14183"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08928"
]
}
},
{
"id":"trnapro_c",
"name":"TRNA(Pro)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnapro_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnapro"
],
"biocyc":[
"META:PRO-tRNAs"
],
"chebi":[
"CHEBI:15184",
"CHEBI:29177",
"CHEBI:10688"
],
"kegg.compound":[
"C01649"
],
"metanetx.chemical":[
"MNXM90667"
],
"reactome.compound":[
"379768",
"379775"
],
"sabiork":[
"3843"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11920"
]
}
},
{
"id":"thym_c",
"name":"Thymine C5H6N2O2",
"compartment":"c",
"charge":0,
"formula":"C5H6N2O2",
"notes":{
"original_bigg_ids":[
"thym_c"
]
},
"annotation":{
"bigg.metabolite":[
"thym"
],
"biocyc":[
"META:THYMINE"
],
"chebi":[
"CHEBI:15247",
"CHEBI:27004",
"CHEBI:46017",
"CHEBI:9580",
"CHEBI:17821"
],
"hmdb":[
"HMDB00262"
],
"inchi_key":[
"RWQNBRDOKXIBIV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00178"
],
"metanetx.chemical":[
"MNXM386"
],
"reactome.compound":[
"83960"
],
"sabiork":[
"60"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00151"
]
}
},
{
"id":"protrna_c",
"name":"L-Prolyl-tRNA(Pro)",
"compartment":"c",
"charge":1,
"formula":"C5H8NOR",
"notes":{
"original_bigg_ids":[
"protrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"protrna"
],
"chebi":[
"CHEBI:6287",
"CHEBI:13155",
"CHEBI:29154"
],
"kegg.compound":[
"C02702"
],
"metanetx.chemical":[
"MNXM247"
],
"reactome.compound":[
"379746",
"379745"
],
"sabiork":[
"3863"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12164"
]
}
},
{
"id":"pro__L_p",
"name":"L-Proline",
"compartment":"p",
"charge":0,
"formula":"C5H9NO2",
"notes":{
"original_bigg_ids":[
"pro_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"pro__L"
],
"biocyc":[
"META:PRO"
],
"chebi":[
"CHEBI:26271",
"CHEBI:60039",
"CHEBI:45100",
"CHEBI:13154",
"CHEBI:184637",
"CHEBI:17203",
"CHEBI:21373",
"CHEBI:32862",
"CHEBI:32872",
"CHEBI:45040",
"CHEBI:32871",
"CHEBI:6286",
"CHEBI:32864",
"CHEBI:42067",
"CHEBI:45159",
"CHEBI:58054"
],
"hmdb":[
"HMDB00162"
],
"inchi_key":[
"ONIBWKKTOPOVIA-BYPYZUCNSA-N"
],
"kegg.compound":[
"C00148",
"C16435"
],
"kegg.drug":[
"D00035"
],
"metanetx.chemical":[
"MNXM114"
],
"reactome.compound":[
"352033",
"379717",
"113538"
],
"sabiork":[
"25536",
"82"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00129",
"cpd15140"
]
}
},
{
"id":"applp_c",
"name":"D-1-Aminopropan-2-ol O-phosphate",
"compartment":"c",
"charge":-1,
"formula":"C3H9NO4P",
"notes":{
"original_bigg_ids":[
"appp_c"
]
},
"annotation":{
"bigg.metabolite":[
"applp"
],
"biocyc":[
"META:R-1-AMINOPROPAN-2-YL-PHOSPHATE"
],
"chebi":[
"CHEBI:58563",
"CHEBI:4076",
"CHEBI:20886",
"CHEBI:28390"
],
"inchi_key":[
"YBOLZUJJGUZUDC-GSVOUGTGSA-M"
],
"kegg.compound":[
"C04122"
],
"metanetx.chemical":[
"MNXM1697"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02547"
]
}
},
{
"id":"thym_p",
"name":"Thymine C5H6N2O2",
"compartment":"p",
"charge":0,
"formula":"C5H6N2O2",
"notes":{
"original_bigg_ids":[
"thym_p"
]
},
"annotation":{
"bigg.metabolite":[
"thym"
],
"biocyc":[
"META:THYMINE"
],
"chebi":[
"CHEBI:15247",
"CHEBI:27004",
"CHEBI:46017",
"CHEBI:9580",
"CHEBI:17821"
],
"hmdb":[
"HMDB00262"
],
"inchi_key":[
"RWQNBRDOKXIBIV-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00178"
],
"metanetx.chemical":[
"MNXM386"
],
"reactome.compound":[
"83960"
],
"sabiork":[
"60"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00151"
]
}
},
{
"id":"5prdmbz_c",
"name":"N1-(5-Phospho-alpha-D-ribosyl)-5,6-dimethylbenzimidazole",
"compartment":"c",
"charge":-2,
"formula":"C14H17N2O7P",
"notes":{
"original_bigg_ids":[
"5prdmbz_c"
]
},
"annotation":{
"bigg.metabolite":[
"5prdmbz"
],
"biocyc":[
"META:ALPHA-RIBAZOLE-5-P"
],
"chebi":[
"CHEBI:45256",
"CHEBI:12622",
"CHEBI:45218",
"CHEBI:16837",
"CHEBI:45255",
"CHEBI:7355",
"CHEBI:30599",
"CHEBI:57918",
"CHEBI:21797"
],
"hmdb":[
"HMDB03882"
],
"inchi_key":[
"ZMRGXEJKZPRBPJ-SYQHCUMBSA-L"
],
"kegg.compound":[
"C04778"
],
"metanetx.chemical":[
"MNXM1224"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02904"
]
}
},
{
"id":"psclys_p",
"name":"Psicoselysine",
"compartment":"p",
"charge":1,
"formula":"C12H25N2O7",
"notes":{
"original_bigg_ids":[
"psclys_p"
]
},
"annotation":{
"bigg.metabolite":[
"psclys"
],
"biocyc":[
"META:PSICOSELYSINE"
],
"chebi":[
"CHEBI:61403",
"CHEBI:61425"
],
"inchi_key":[
"BFSYFTQDGRDJNV-CDEVMZEPSA-O"
],
"metanetx.chemical":[
"MNXM6409"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15559"
]
}
},
{
"id":"tmao_p",
"name":"Trimethylamine N-oxide",
"compartment":"p",
"charge":0,
"formula":"C3H9NO",
"notes":{
"original_bigg_ids":[
"tmao_p"
]
},
"annotation":{
"bigg.metabolite":[
"tmao"
],
"biocyc":[
"META:TRIMETHYLAMINE-N-O"
],
"chebi":[
"CHEBI:15724",
"CHEBI:15262",
"CHEBI:27126",
"CHEBI:9733",
"CHEBI:15263"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c203aa4e-eb3d-491f-80bc-2b014da6482f"
],
"hmdb":[
"HMDB00925"
],
"inchi_key":[
"UYPYRKYUKCHHIB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C01104"
],
"metanetx.chemical":[
"MNXM437"
],
"reactome.compound":[
"140963"
],
"sabiork":[
"5388"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00811"
]
}
},
{
"id":"skm5p_c",
"name":"Shikimate 5-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C7H8O8P",
"notes":{
"original_bigg_ids":[
"skm5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"skm5p"
],
"biocyc":[
"META:SHIKIMATE-5P"
],
"chebi":[
"CHEBI:11886",
"CHEBI:15084",
"CHEBI:17052",
"CHEBI:9134",
"CHEBI:145989",
"CHEBI:20195"
],
"inchi_key":[
"QYOJSKGCWNAKGW-PBXRRBTRSA-K"
],
"kegg.compound":[
"C03175"
],
"metanetx.chemical":[
"MNXM1265"
],
"reactome.compound":[
"964859"
],
"sabiork":[
"1736"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02030"
]
}
},
{
"id":"adocblp_c",
"name":"Adenosylcobalamin-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C72H99CoN18O20P2",
"notes":{
"original_bigg_ids":[
"adocblp_c"
]
},
"annotation":{
"bigg.metabolite":[
"adocblp"
],
"metanetx.chemical":[
"MNXM148035"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tma_p",
"name":"Trimethylamine",
"compartment":"p",
"charge":1,
"formula":"C3H10N",
"notes":{
"original_bigg_ids":[
"tma_p"
]
},
"annotation":{
"bigg.metabolite":[
"tma"
],
"biocyc":[
"META:TRIMETHYLAMINE"
],
"chebi":[
"CHEBI:9732",
"CHEBI:18139",
"CHEBI:15261",
"CHEBI:58389",
"CHEBI:27127",
"CHEBI:27125"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3311ee4e-2800-486b-9556-983f5d367c23"
],
"hmdb":[
"HMDB00906"
],
"inchi_key":[
"GETQZCLCWQTVFV-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00565"
],
"metanetx.chemical":[
"MNXM352"
],
"reactome.compound":[
"30373"
],
"sabiork":[
"2096"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00441"
]
}
},
{
"id":"dmbzid_c",
"name":"5,6-Dimethylbenzimidazole",
"compartment":"c",
"charge":0,
"formula":"C9H10N2",
"notes":{
"original_bigg_ids":[
"dmbzid_c"
]
},
"annotation":{
"bigg.metabolite":[
"dmbzid"
],
"biocyc":[
"META:DIMETHYLBENZIMIDAZOLE"
],
"chebi":[
"CHEBI:14172",
"CHEBI:20516",
"CHEBI:4620",
"CHEBI:15890",
"CHEBI:42126"
],
"hmdb":[
"HMDB03701"
],
"inchi_key":[
"LJUQGASMPRMWIW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C03114"
],
"metanetx.chemical":[
"MNXM1531"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01997"
]
}
},
{
"id":"ps120_c",
"name":"Phosphatidylserine (didodecanoyl, n-C12:0)",
"compartment":"c",
"charge":-1,
"formula":"C30H57N1O10P1",
"notes":{
"original_bigg_ids":[
"ps120_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps120"
],
"metanetx.chemical":[
"MNXM7659"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2tpr3dpcoa_c",
"name":"2'-(5''-triphosphoribosyl)-3'-dephospho-CoA",
"compartment":"c",
"charge":-6,
"formula":"C26H40N7O26P5S",
"notes":{
"original_bigg_ids":[
"2tpr3dpcoa_c"
]
},
"annotation":{
"bigg.metabolite":[
"2tpr3dpcoa"
],
"biocyc":[
"META:2-5-TRIPHOSPHORIBOSYL-3-DEPHOSPHO-"
],
"chebi":[
"CHEBI:11392",
"CHEBI:61378"
],
"inchi_key":[
"NFWZJXFBUKDGOX-HWCXJHOSSA-H"
],
"kegg.compound":[
"C19771"
],
"lipidmaps":[
"LMFA07050169"
],
"metanetx.chemical":[
"MNXM2769"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15364"
]
}
},
{
"id":"ps140_c",
"name":"Phosphatidylserine (ditetradecanoyl, n-C14:0)",
"compartment":"c",
"charge":-1,
"formula":"C34H65N1O10P1",
"notes":{
"original_bigg_ids":[
"ps140_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps140"
],
"metanetx.chemical":[
"MNXM7665"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ps141_c",
"name":"Phosphatidylserine (ditetradec-7-enoyl, n-C14:1)",
"compartment":"c",
"charge":-1,
"formula":"C34H61N1O10P1",
"notes":{
"original_bigg_ids":[
"ps141_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps141"
],
"metanetx.chemical":[
"MNXM7664"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ps160_c",
"name":"Phosphatidylserine (dihexadecanoyl, n-C16:0)",
"compartment":"c",
"charge":-1,
"formula":"C38H73N1O10P1",
"notes":{
"original_bigg_ids":[
"ps160_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps160"
],
"biocyc":[
"META:CPD-12817"
],
"chebi":[
"CHEBI:84523",
"CHEBI:111515"
],
"hmdb":[
"HMDB00614"
],
"inchi_key":[
"KLFKZIQAIPDJCW-GPOMZPHUSA-M"
],
"lipidmaps":[
"LMGP03010029"
],
"metanetx.chemical":[
"MNXM32181"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd23595",
"cpd15555"
],
"slm":[
"000005400"
]
}
},
{
"id":"remnant1_c",
"name":"Residual-atoms-of-reaction-DMBZIDSYN",
"compartment":"c",
"charge":0,
"formula":"C4H2N2O3",
"notes":{
"original_bigg_ids":[
"remnant1_c"
]
},
"annotation":{
"bigg.metabolite":[
"remnant1"
],
"metanetx.chemical":[
"MNXM147606"
],
"sbo":"SBO:0000247"
}
},
{
"id":"app_c",
"name":"R-1-Amino-2-propanol",
"compartment":"c",
"charge":0,
"formula":"C3H9NO",
"notes":{
"original_bigg_ids":[
"app_c"
]
},
"annotation":{
"bigg.metabolite":[
"app"
],
"metanetx.chemical":[
"MNXM149174"
],
"sbo":"SBO:0000247"
}
},
{
"id":"remnant1_e",
"name":"Residual-atoms-of-reaction-DMBZIDSYN",
"compartment":"e",
"charge":0,
"formula":"C4H2N2O3",
"notes":{
"original_bigg_ids":[
"remnant1_e"
]
},
"annotation":{
"bigg.metabolite":[
"remnant1"
],
"metanetx.chemical":[
"MNXM147606"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tre6p_c",
"name":"Alpha,alpha'-Trehalose 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C12H21O14P",
"notes":{
"original_bigg_ids":[
"tre6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"tre6p"
],
"biocyc":[
"META:TREHALOSE-6P"
],
"chebi":[
"CHEBI:12285",
"CHEBI:18283",
"CHEBI:15252",
"CHEBI:10201",
"CHEBI:22364",
"CHEBI:58429"
],
"hmdb":[
"HMDB01124"
],
"inchi_key":[
"LABSPYBHMPDTEL-LIZSDCNHSA-L"
],
"kegg.compound":[
"C00689"
],
"kegg.glycan":[
"G09795"
],
"metanetx.chemical":[
"MNXM448"
],
"reactome.compound":[
"868701"
],
"sabiork":[
"1613"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00523"
]
}
},
{
"id":"remnant1_p",
"name":"Residual-atoms-of-reaction-DMBZIDSYN",
"compartment":"p",
"charge":0,
"formula":"C4H2N2O3",
"notes":{
"original_bigg_ids":[
"remnant1_p"
]
},
"annotation":{
"bigg.metabolite":[
"remnant1"
],
"metanetx.chemical":[
"MNXM147606"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ps161_c",
"name":"Phosphatidylserine (dihexadec-9-enoyl, n-C16:1)",
"compartment":"c",
"charge":-1,
"formula":"C38H69N1O10P1",
"notes":{
"original_bigg_ids":[
"ps161_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps161"
],
"metanetx.chemical":[
"MNXM7660"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ps180_c",
"name":"Phosphatidylserine (dioctadecanoyl, n-C18:0)",
"compartment":"c",
"charge":-1,
"formula":"C42H81N1O10P1",
"notes":{
"original_bigg_ids":[
"ps180_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps180"
],
"biocyc":[
"META:CPD-12816"
],
"chebi":[
"CHEBI:84519"
],
"hmdb":[
"HMDB12378"
],
"inchi_key":[
"TZCPCKNHXULUIY-RGULYWFUSA-M"
],
"lipidmaps":[
"LMGP03010036"
],
"metanetx.chemical":[
"MNXM75116"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15557",
"cpd23594"
],
"slm":[
"000005403"
]
}
},
{
"id":"tre_c",
"name":"Trehalose",
"compartment":"c",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"tre_c"
]
},
"annotation":{
"bigg.metabolite":[
"tre"
],
"biocyc":[
"META:CPD-15990",
"META:TREHALOSE"
],
"chebi":[
"CHEBI:46211",
"CHEBI:12284",
"CHEBI:12281",
"CHEBI:15251",
"CHEBI:22365",
"CHEBI:10202",
"CHEBI:12287",
"CHEBI:16551",
"CHEBI:27082"
],
"hmdb":[
"HMDB00975"
],
"inchi_key":[
"HDTRYLNUVZCQOY-LIZSDCNHSA-N"
],
"kegg.compound":[
"C01083"
],
"kegg.glycan":[
"G00293"
],
"metanetx.chemical":[
"MNXM198"
],
"reactome.compound":[
"868614",
"189078"
],
"sabiork":[
"91"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00794"
]
}
},
{
"id":"ps181_c",
"name":"Phosphatidylserine (dioctadec-11-enoyl, n-C18:1)",
"compartment":"c",
"charge":-1,
"formula":"C42H77N1O10P1",
"notes":{
"original_bigg_ids":[
"ps181_c"
]
},
"annotation":{
"bigg.metabolite":[
"ps181"
],
"metanetx.chemical":[
"MNXM7662"
],
"sbo":"SBO:0000247"
}
},
{
"id":"colipa20Oag_e",
"name":"O-antigen-x20-core-oligosaccharide-lipid-A",
"compartment":"e",
"charge":-11,
"formula":"C656H1103N2O440P4",
"notes":{
"original_bigg_ids":[
"colipa20Oag_e"
]
},
"annotation":{
"bigg.metabolite":[
"colipa20Oag"
],
"metanetx.chemical":[
"MNXM147525"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tre_p",
"name":"Trehalose",
"compartment":"p",
"charge":0,
"formula":"C12H22O11",
"notes":{
"original_bigg_ids":[
"tre_p"
]
},
"annotation":{
"bigg.metabolite":[
"tre"
],
"biocyc":[
"META:CPD-15990",
"META:TREHALOSE"
],
"chebi":[
"CHEBI:46211",
"CHEBI:12284",
"CHEBI:12281",
"CHEBI:15251",
"CHEBI:22365",
"CHEBI:10202",
"CHEBI:12287",
"CHEBI:16551",
"CHEBI:27082"
],
"hmdb":[
"HMDB00975"
],
"inchi_key":[
"HDTRYLNUVZCQOY-LIZSDCNHSA-N"
],
"kegg.compound":[
"C01083"
],
"kegg.glycan":[
"G00293"
],
"metanetx.chemical":[
"MNXM198"
],
"reactome.compound":[
"868614",
"189078"
],
"sabiork":[
"91"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00794"
]
}
},
{
"id":"pser__L_c",
"name":"O-Phospho-L-serine",
"compartment":"c",
"charge":-2,
"formula":"C3H6NO6P",
"notes":{
"original_bigg_ids":[
"pser_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"pser__L"
],
"biocyc":[
"META:3-P-SERINE"
],
"chebi":[
"CHEBI:57524",
"CHEBI:12718",
"CHEBI:15811",
"CHEBI:21966",
"CHEBI:7692"
],
"hmdb":[
"HMDB00272"
],
"inchi_key":[
"BZQFBWGGLXLEPQ-REOHCLBHSA-L"
],
"kegg.compound":[
"C01005"
],
"metanetx.chemical":[
"MNXM379"
],
"reactome.compound":[
"936706"
],
"sabiork":[
"2212"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00738"
]
}
},
{
"id":"trnatrp_c",
"name":"TRNA(Trp)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnatrp_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnatrp"
],
"biocyc":[
"META:TRP-tRNAs"
],
"chebi":[
"CHEBI:10691",
"CHEBI:15188",
"CHEBI:29181"
],
"kegg.compound":[
"C01652"
],
"metanetx.chemical":[
"MNXM90755"
],
"reactome.compound":[
"379774",
"379763"
],
"sabiork":[
"3839"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28239",
"cpd11923"
]
}
},
{
"id":"pser__L_p",
"name":"O-Phospho-L-serine",
"compartment":"p",
"charge":-2,
"formula":"C3H6NO6P",
"notes":{
"original_bigg_ids":[
"pser_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"pser__L"
],
"biocyc":[
"META:3-P-SERINE"
],
"chebi":[
"CHEBI:57524",
"CHEBI:12718",
"CHEBI:15811",
"CHEBI:21966",
"CHEBI:7692"
],
"hmdb":[
"HMDB00272"
],
"inchi_key":[
"BZQFBWGGLXLEPQ-REOHCLBHSA-L"
],
"kegg.compound":[
"C01005"
],
"metanetx.chemical":[
"MNXM379"
],
"reactome.compound":[
"936706"
],
"sabiork":[
"2212"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00738"
]
}
},
{
"id":"trptrna_c",
"name":"L-Tryptophanyl-tRNA(Trp)",
"compartment":"c",
"charge":1,
"formula":"C11H11N2OR",
"notes":{
"original_bigg_ids":[
"trptrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"trptrna"
],
"chebi":[
"CHEBI:6312",
"CHEBI:13179",
"CHEBI:29159"
],
"kegg.compound":[
"C03512"
],
"metanetx.chemical":[
"MNXM89804"
],
"reactome.compound":[
"379765",
"379759"
],
"sabiork":[
"3859"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12336"
]
}
},
{
"id":"thrp_p",
"name":"L-Threonine O-3-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C4H8NO6P",
"notes":{
"original_bigg_ids":[
"thrp_p"
]
},
"annotation":{
"bigg.metabolite":[
"thrp"
],
"biocyc":[
"META:L-THREONINE-O-3-PHOSPHATE"
],
"chebi":[
"CHEBI:58675",
"CHEBI:45955",
"CHEBI:37525",
"CHEBI:31757",
"CHEBI:21967"
],
"hmdb":[
"HMDB11185"
],
"inchi_key":[
"USRGIUJOYOXOQJ-GBXIJSLDSA-L"
],
"kegg.compound":[
"C12147"
],
"metanetx.chemical":[
"MNXM1492"
],
"sabiork":[
"14183"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08928"
]
}
},
{
"id":"trp__L_p",
"name":"L-Tryptophan",
"compartment":"p",
"charge":0,
"formula":"C11H12N2O2",
"notes":{
"original_bigg_ids":[
"trp_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"trp__L"
],
"biocyc":[
"META:TRP"
],
"chebi":[
"CHEBI:13178",
"CHEBI:27163",
"CHEBI:6310",
"CHEBI:9769",
"CHEBI:32728",
"CHEBI:16828",
"CHEBI:27897",
"CHEBI:21407",
"CHEBI:64554",
"CHEBI:46125",
"CHEBI:57912",
"CHEBI:32704",
"CHEBI:46086",
"CHEBI:45988",
"CHEBI:184633",
"CHEBI:46225",
"CHEBI:32727",
"CHEBI:32702"
],
"hmdb":[
"HMDB00929",
"HMDB30396"
],
"inchi_key":[
"QIVBCDIJIAJPQS-VIFPVBQESA-N"
],
"kegg.compound":[
"C00806",
"C00078"
],
"kegg.drug":[
"D00020"
],
"metanetx.chemical":[
"MNXM94"
],
"reactome.compound":[
"379709",
"352006",
"29500"
],
"sabiork":[
"2164",
"85"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19007",
"cpd00065"
]
}
},
{
"id":"thr__L_p",
"name":"L-Threonine",
"compartment":"p",
"charge":0,
"formula":"C4H9NO3",
"notes":{
"original_bigg_ids":[
"thr_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"thr__L"
],
"biocyc":[
"META:THR"
],
"chebi":[
"CHEBI:16857",
"CHEBI:42083",
"CHEBI:32822",
"CHEBI:45843",
"CHEBI:57926",
"CHEBI:21403",
"CHEBI:32833",
"CHEBI:32820",
"CHEBI:13175",
"CHEBI:6308",
"CHEBI:45983",
"CHEBI:32832",
"CHEBI:26986"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b570a573-71c2-4661-a517-6ac1b121dc59"
],
"hmdb":[
"HMDB00167"
],
"inchi_key":[
"AYFVYJQAPQTCCC-GBXIJSLDSA-N"
],
"kegg.compound":[
"C00188"
],
"kegg.drug":[
"D00041"
],
"metanetx.chemical":[
"MNXM142"
],
"reactome.compound":[
"352000",
"351990",
"379706"
],
"sabiork":[
"76",
"27463"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00161"
]
}
},
{
"id":"ptrc_p",
"name":"Putrescine",
"compartment":"p",
"charge":2,
"formula":"C4H14N2",
"notes":{
"original_bigg_ids":[
"ptrc_p"
]
},
"annotation":{
"bigg.metabolite":[
"ptrc"
],
"biocyc":[
"META:PUTRESCINE"
],
"chebi":[
"CHEBI:8650",
"CHEBI:17148",
"CHEBI:45092",
"CHEBI:26405",
"CHEBI:14972",
"CHEBI:326268"
],
"hmdb":[
"HMDB01414",
"HMDB60243"
],
"inchi_key":[
"KIDHWZJUCRJVML-UHFFFAOYSA-P"
],
"kegg.compound":[
"C00134"
],
"metanetx.chemical":[
"MNXM118"
],
"reactome.compound":[
"29610",
"141350"
],
"sabiork":[
"1941"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00118",
"cpd12215"
]
}
},
{
"id":"colipa20Oag_p",
"name":"O-antigen-x20-core-oligosaccharide-lipid-A",
"compartment":"p",
"charge":-11,
"formula":"C656H1103N2O440P4",
"notes":{
"original_bigg_ids":[
"colipa20Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"colipa20Oag"
],
"metanetx.chemical":[
"MNXM147525"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tungs_c",
"name":"Tungstate",
"compartment":"c",
"charge":-2,
"formula":"O4W1",
"notes":{
"original_bigg_ids":[
"tungs_c"
]
},
"annotation":{
"bigg.metabolite":[
"tungs"
],
"biocyc":[
"META:TUNGSTATE"
],
"chebi":[
"CHEBI:36271",
"CHEBI:30518",
"CHEBI:36272",
"CHEBI:46497",
"CHEBI:46502"
],
"inchi_key":[
"PBYZMCDFOULPGH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C20679"
],
"metanetx.chemical":[
"MNXM88308"
],
"sabiork":[
"18862"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15574"
]
}
},
{
"id":"udcdp20Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-20x",
"compartment":"p",
"charge":-2,
"formula":"C535H890O347P2",
"notes":{
"original_bigg_ids":[
"udcdp20Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp20Oag"
],
"metanetx.chemical":[
"MNXM148547"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udcdpgalrmnmanabe_c",
"name":"Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose",
"compartment":"c",
"charge":-2,
"formula":"C79H130O24P2",
"notes":{
"original_bigg_ids":[
"udcdpgalrmnmanabe_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcdpgalrmnmanabe"
],
"sbo":"SBO:0000247"
}
},
{
"id":"xan_c",
"name":"Xanthine",
"compartment":"c",
"charge":0,
"formula":"C5H4N4O2",
"notes":{
"original_bigg_ids":[
"xan_c"
]
},
"annotation":{
"bigg.metabolite":[
"xan"
],
"biocyc":[
"META:XANTHINE"
],
"chebi":[
"CHEBI:15318",
"CHEBI:10059",
"CHEBI:46377",
"CHEBI:48517",
"CHEBI:17712",
"CHEBI:27317"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3cf4dbf8-ae84-49e6-b294-b5138cb94f75"
],
"hmdb":[
"HMDB00292"
],
"inchi_key":[
"LRFVTYWOQMYALW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00385"
],
"metanetx.chemical":[
"MNXM174"
],
"reactome.compound":[
"30064"
],
"sabiork":[
"1871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00309"
]
}
},
{
"id":"tungs_p",
"name":"Tungstate",
"compartment":"p",
"charge":-2,
"formula":"O4W1",
"notes":{
"original_bigg_ids":[
"tungs_p"
]
},
"annotation":{
"bigg.metabolite":[
"tungs"
],
"biocyc":[
"META:TUNGSTATE"
],
"chebi":[
"CHEBI:36271",
"CHEBI:30518",
"CHEBI:36272",
"CHEBI:46497",
"CHEBI:46502"
],
"inchi_key":[
"PBYZMCDFOULPGH-UHFFFAOYSA-N"
],
"kegg.compound":[
"C20679"
],
"metanetx.chemical":[
"MNXM88308"
],
"sabiork":[
"18862"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15574"
]
}
},
{
"id":"pydx_c",
"name":"Pyridoxal",
"compartment":"c",
"charge":0,
"formula":"C8H9NO3",
"notes":{
"original_bigg_ids":[
"pydx_c"
]
},
"annotation":{
"bigg.metabolite":[
"pydx"
],
"biocyc":[
"META:PYRIDOXAL"
],
"chebi":[
"CHEBI:45112",
"CHEBI:131530",
"CHEBI:14976",
"CHEBI:26423",
"CHEBI:17310",
"CHEBI:8667"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/049709c3-768e-468f-b435-40e990942002"
],
"hmdb":[
"HMDB01545"
],
"inchi_key":[
"RADKZDMFGJYCBB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00250"
],
"metanetx.chemical":[
"MNXM311"
],
"reactome.compound":[
"965131"
],
"sabiork":[
"1991"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00215"
]
}
},
{
"id":"udcdpgalrmnmanabe_p",
"name":"Undecaprenyl-diphosphate-galactose-rhamnose-mannose-abequose",
"compartment":"p",
"charge":-2,
"formula":"C79H130O24P2",
"notes":{
"original_bigg_ids":[
"udcdpgalrmnmanabe_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdpgalrmnmanabe"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tym_p",
"name":"Tyramine",
"compartment":"p",
"charge":1,
"formula":"C8H12NO",
"notes":{
"original_bigg_ids":[
"tym_p"
]
},
"annotation":{
"bigg.metabolite":[
"tym"
],
"biocyc":[
"META:TYRAMINE"
],
"chebi":[
"CHEBI:15760",
"CHEBI:327995",
"CHEBI:9799",
"CHEBI:15276",
"CHEBI:27174"
],
"hmdb":[
"HMDB62629",
"HMDB00306"
],
"inchi_key":[
"DZGWFCGJZKJUFP-UHFFFAOYSA-O"
],
"kegg.compound":[
"C00483"
],
"metanetx.chemical":[
"MNXM603"
],
"reactome.compound":[
"500606",
"5696181"
],
"sabiork":[
"5113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00374"
]
}
},
{
"id":"udcdpgal_c",
"name":"Undecaprenyl-diphosphate-galactose",
"compartment":"c",
"charge":-2,
"formula":"C61H100O12P2",
"notes":{
"original_bigg_ids":[
"udcdpgal_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcdpgal"
],
"metanetx.chemical":[
"MNXM147330"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29727"
]
}
},
{
"id":"pyr_p",
"name":"Pyruvate",
"compartment":"p",
"charge":-1,
"formula":"C3H3O3",
"notes":{
"original_bigg_ids":[
"pyr_p"
]
},
"annotation":{
"bigg.metabolite":[
"pyr"
],
"biocyc":[
"META:PYRUVATE"
],
"chebi":[
"CHEBI:26462",
"CHEBI:26466",
"CHEBI:8685",
"CHEBI:32816",
"CHEBI:45253",
"CHEBI:14987",
"CHEBI:15361"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/ccc99777-54dc-42d4-a97e-009b780d3905",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/dc01020e-8c7e-4087-9f56-cf8c962b7437"
],
"hmdb":[
"HMDB00243"
],
"inchi_key":[
"LCTONWCANYUPML-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00022"
],
"lipidmaps":[
"LMFA01060077"
],
"metanetx.chemical":[
"MNXM23"
],
"reactome.compound":[
"1130930",
"5357717",
"113557",
"29398",
"389680"
],
"sabiork":[
"33"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00020"
]
}
},
{
"id":"tyr__L_p",
"name":"L-Tyrosine",
"compartment":"p",
"charge":0,
"formula":"C9H11NO3",
"notes":{
"original_bigg_ids":[
"tyr_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"tyr__L"
],
"biocyc":[
"META:TYR"
],
"chebi":[
"CHEBI:6313",
"CHEBI:21411",
"CHEBI:46070",
"CHEBI:9800",
"CHEBI:32786",
"CHEBI:15277",
"CHEBI:32761",
"CHEBI:32784",
"CHEBI:46161",
"CHEBI:13181",
"CHEBI:32760",
"CHEBI:58315",
"CHEBI:32762",
"CHEBI:27176",
"CHEBI:17895",
"CHEBI:18186",
"CHEBI:32785"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/974bd9b7-53fb-48cd-aaf3-6bd3196c0365"
],
"hmdb":[
"HMDB00647",
"HMDB00158"
],
"inchi_key":[
"OUYCCCASQSFEME-QMMMGPOBSA-N"
],
"kegg.compound":[
"C00082",
"C01536"
],
"kegg.drug":[
"D00022"
],
"metanetx.chemical":[
"MNXM76"
],
"reactome.compound":[
"379710",
"5668567",
"352030",
"29506"
],
"sabiork":[
"84",
"2291"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd30745",
"cpd00069"
]
}
},
{
"id":"o2s_c",
"name":"Superoxide anion",
"compartment":"c",
"charge":-1,
"formula":"O2",
"notes":{
"original_bigg_ids":[
"o2s_c"
]
},
"annotation":{
"bigg.metabolite":[
"o2s"
],
"biocyc":[
"META:SUPER-OXIDE"
],
"chebi":[
"CHEBI:25935",
"CHEBI:30492",
"CHEBI:7710",
"CHEBI:18421",
"CHEBI:15143",
"CHEBI:26839"
],
"hmdb":[
"HMDB02168"
],
"inchi_key":[
"OUUQCZGPVNCOIJ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00704"
],
"metanetx.chemical":[
"MNXM330"
],
"reactome.compound":[
"1222461",
"1475048",
"1470070"
],
"sabiork":[
"5191"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udcdpgalrmn_c",
"name":"Undecaprenyl-diphosphate-galactose-rhamnose",
"compartment":"c",
"charge":-2,
"formula":"C67H110O16P2",
"notes":{
"original_bigg_ids":[
"udcdpgalrmn_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcdpgalrmn"
],
"metanetx.chemical":[
"MNXM723013"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tyrp_p",
"name":"Phosphotyrosine",
"compartment":"p",
"charge":-2,
"formula":"C9H10NO6P",
"notes":{
"original_bigg_ids":[
"tyrp_p"
]
},
"annotation":{
"bigg.metabolite":[
"tyrp"
],
"biocyc":[
"META:CPD-3728"
],
"chebi":[
"CHEBI:45080",
"CHEBI:45209",
"CHEBI:45158",
"CHEBI:62338",
"CHEBI:45187",
"CHEBI:21991",
"CHEBI:8171",
"CHEBI:37788"
],
"hmdb":[
"HMDB06049"
],
"inchi_key":[
"DCWXELXMIBXGTH-QMMMGPOBSA-L"
],
"kegg.compound":[
"C06501"
],
"metanetx.chemical":[
"MNXM3323"
],
"sabiork":[
"2897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03912"
]
}
},
{
"id":"udcdpgalrmnman_c",
"name":"Undecaprenyl-diphosphate-galactose-rhamnose-mannose",
"compartment":"c",
"charge":-2,
"formula":"C73H120O21P2",
"notes":{
"original_bigg_ids":[
"udcdpgalrmnman_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcdpgalrmnman"
],
"metanetx.chemical":[
"MNXM723014"
],
"sbo":"SBO:0000247"
}
},
{
"id":"rib__D_p",
"name":"D-Ribose",
"compartment":"p",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"rib_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"rib__D"
],
"biocyc":[
"META:D-Ribofuranose",
"META:D-Ribopyranose"
],
"chebi":[
"CHEBI:13011",
"CHEBI:16988",
"CHEBI:46999",
"CHEBI:47013",
"CHEBI:47006",
"CHEBI:4233",
"CHEBI:21078"
],
"hmdb":[
"HMDB00283"
],
"inchi_key":[
"HMFHBZSHGGEWLO-SOOFDHNKSA-N"
],
"kegg.compound":[
"C21057",
"C00121"
],
"metanetx.chemical":[
"MNXM242"
],
"sabiork":[
"1653"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00105"
]
}
},
{
"id":"r5p_p",
"name":"Alpha-D-Ribose 5-phosphate",
"compartment":"p",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"r5p_p"
]
},
"annotation":{
"bigg.metabolite":[
"r5p"
],
"biocyc":[
"META:CPD-15318"
],
"chebi":[
"CHEBI:18189",
"CHEBI:22413",
"CHEBI:12331",
"CHEBI:10270"
],
"inchi_key":[
"KTVPXOYAKDPRHY-AIHAYLRMSA-L"
],
"kegg.compound":[
"C03736"
],
"metanetx.chemical":[
"MNXM15900"
],
"sabiork":[
"1473"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19028"
]
}
},
{
"id":"tyrtrna_c",
"name":"L-Tyrosyl-tRNA(Tyr)",
"compartment":"c",
"charge":1,
"formula":"C9H10NO2R",
"notes":{
"original_bigg_ids":[
"tyrtrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"tyrtrna"
],
"chebi":[
"CHEBI:13185",
"CHEBI:6318",
"CHEBI:29161"
],
"kegg.compound":[
"C02839"
],
"metanetx.chemical":[
"MNXM89822"
],
"reactome.compound":[
"379755",
"379785"
],
"sabiork":[
"3851"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12194"
]
}
},
{
"id":"dmlz_c",
"name":"6,7-Dimethyl-8-(1-D-ribityl)lumazine",
"compartment":"c",
"charge":0,
"formula":"C13H18N4O6",
"notes":{
"original_bigg_ids":[
"dmlz_c"
]
},
"annotation":{
"bigg.metabolite":[
"dmlz"
],
"biocyc":[
"META:DIMETHYL-D-RIBITYL-LUMAZINE"
],
"chebi":[
"CHEBI:20682",
"CHEBI:58201",
"CHEBI:17601",
"CHEBI:2154",
"CHEBI:12185"
],
"hmdb":[
"HMDB03826"
],
"inchi_key":[
"SXDXRJZUAJBNFL-XKSSXDPKSA-M"
],
"kegg.compound":[
"C04332"
],
"metanetx.chemical":[
"MNXM1313"
],
"sabiork":[
"7240"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02656"
]
}
},
{
"id":"cdpabeq_c",
"name":"CDP-abequose",
"compartment":"c",
"charge":-2,
"formula":"C15H23N3O14P2",
"notes":{
"original_bigg_ids":[
"cdpabeq_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpabeq"
],
"biocyc":[
"META:CDP-ABEQUOSE"
],
"chebi":[
"CHEBI:13266",
"CHEBI:3266",
"CHEBI:57619",
"CHEBI:16049",
"CHEBI:70784",
"CHEBI:20865",
"CHEBI:70799"
],
"inchi_key":[
"JHEDABDMLBOYRG-YGBYUOMUSA-L"
],
"kegg.compound":[
"C01788"
],
"metanetx.chemical":[
"MNXM4515"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01233"
]
}
},
{
"id":"trnatyr_c",
"name":"TRNA(Tyr)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnatyr_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnatyr"
],
"biocyc":[
"META:TYR-tRNAs"
],
"chebi":[
"CHEBI:10692",
"CHEBI:15189",
"CHEBI:29182"
],
"kegg.compound":[
"C00787"
],
"metanetx.chemical":[
"MNXM90668"
],
"reactome.compound":[
"379756",
"379743"
],
"sabiork":[
"3838"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11751"
]
}
},
{
"id":"ru5p__L_c",
"name":"L-Ribulose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"ru5p_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"ru5p__L"
],
"biocyc":[
"META:L-RIBULOSE-5-P"
],
"chebi":[
"CHEBI:21383",
"CHEBI:13164",
"CHEBI:6296",
"CHEBI:58226",
"CHEBI:17666"
],
"inchi_key":[
"FNZLKVNUWIIPSJ-CRCLSJGQSA-L"
],
"kegg.compound":[
"C01101"
],
"metanetx.chemical":[
"MNXM901"
],
"sabiork":[
"1353"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00808"
]
}
},
{
"id":"u3hga_c",
"name":"UDP-3-O-(3-hydroxytetradecanoyl)-D-glucosamine",
"compartment":"c",
"charge":-1,
"formula":"C29H50N3O18P2",
"notes":{
"original_bigg_ids":[
"u3hga_c"
]
},
"annotation":{
"bigg.metabolite":[
"u3hga"
],
"biocyc":[
"META:UDP-OHMYR-GLUCOSAMINE"
],
"chebi":[
"CHEBI:27392",
"CHEBI:58510",
"CHEBI:71573",
"CHEBI:71619",
"CHEBI:9807",
"CHEBI:22095"
],
"inchi_key":[
"ZFPNNOXCEDQJQS-SSVOXRMNSA-M"
],
"kegg.compound":[
"C06022"
],
"metanetx.chemical":[
"MNXM2036"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03584"
]
}
},
{
"id":"xu5p__D_c",
"name":"D-Xylulose 5-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C5H9O8P",
"notes":{
"original_bigg_ids":[
"xu5p_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"xu5p__D"
],
"biocyc":[
"META:XYLULOSE-5-PHOSPHATE"
],
"chebi":[
"CHEBI:13036",
"CHEBI:27354",
"CHEBI:4269",
"CHEBI:16332",
"CHEBI:57737",
"CHEBI:21121"
],
"hmdb":[
"HMDB06212",
"HMDB00868"
],
"inchi_key":[
"FNZLKVNUWIIPSJ-RFZPGFLSSA-L"
],
"kegg.compound":[
"C00231"
],
"metanetx.chemical":[
"MNXM186"
],
"reactome.compound":[
"29790"
],
"sabiork":[
"1317"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00198"
]
}
},
{
"id":"uamag_c",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate",
"compartment":"c",
"charge":-4,
"formula":"C28H39N5O23P2",
"notes":{
"original_bigg_ids":[
"uamag_c"
]
},
"annotation":{
"bigg.metabolite":[
"uamag"
],
"biocyc":[
"META:UDP-AA-GLUTAMATE"
],
"chebi":[
"CHEBI:16970",
"CHEBI:13461",
"CHEBI:13482",
"CHEBI:9832",
"CHEBI:46143",
"CHEBI:22125",
"CHEBI:57968",
"CHEBI:83900"
],
"inchi_key":[
"OJZCATPXPWFLHF-HPUCEMLMSA-J"
],
"kegg.compound":[
"C00692"
],
"metanetx.chemical":[
"MNXM955"
],
"sabiork":[
"5185"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00525"
]
}
},
{
"id":"dtdprmn_c",
"name":"DTDP-L-rhamnose",
"compartment":"c",
"charge":-2,
"formula":"C16H24N2O15P2",
"notes":{
"original_bigg_ids":[
"dtdprmn_c"
]
},
"annotation":{
"bigg.metabolite":[
"dtdprmn"
],
"biocyc":[
"META:DTDP-RHAMNOSE"
],
"chebi":[
"CHEBI:15774",
"CHEBI:23547",
"CHEBI:46114",
"CHEBI:61119",
"CHEBI:35452",
"CHEBI:10518",
"CHEBI:14083",
"CHEBI:57510"
],
"hmdb":[
"HMDB06354"
],
"inchi_key":[
"ZOSQFDVXNQFKBY-CGAXJHMRSA-L"
],
"kegg.compound":[
"C03319"
],
"metanetx.chemical":[
"MNXM899"
],
"sabiork":[
"1579"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02113"
]
}
},
{
"id":"ugmd_c",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate",
"compartment":"c",
"charge":-4,
"formula":"C35H51N7O26P2",
"notes":{
"original_bigg_ids":[
"ugmd_c"
]
},
"annotation":{
"bigg.metabolite":[
"ugmd"
],
"chebi":[
"CHEBI:9831",
"CHEBI:28639",
"CHEBI:13463",
"CHEBI:22124",
"CHEBI:58582",
"CHEBI:13460",
"CHEBI:13481",
"CHEBI:30905"
],
"inchi_key":[
"QUHLBZKCGUXHGP-AJVQVANPSA-J"
],
"metanetx.chemical":[
"MNXM162592"
],
"sabiork":[
"7640"
],
"sbo":"SBO:0000247"
}
},
{
"id":"rmn_c",
"name":"L-Rhamnose",
"compartment":"c",
"charge":0,
"formula":"C6H12O5",
"notes":{
"original_bigg_ids":[
"rmn_c"
]
},
"annotation":{
"bigg.metabolite":[
"rmn"
],
"biocyc":[
"META:CPD-15405",
"META:L-rhamnopyranose",
"META:L-rhamnose"
],
"chebi":[
"CHEBI:45427",
"CHEBI:62346",
"CHEBI:6292",
"CHEBI:57622",
"CHEBI:21378",
"CHEBI:26546",
"CHEBI:16055",
"CHEBI:62345",
"CHEBI:13160"
],
"hmdb":[
"HMDB00849"
],
"inchi_key":[
"PNNNRSAQSRJVSB-BXKVDMCESA-N"
],
"kegg.compound":[
"C00507"
],
"metanetx.chemical":[
"MNXM2967"
],
"sabiork":[
"1595"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00396",
"cpd27379"
]
}
},
{
"id":"udcdp2Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-2x",
"compartment":"p",
"charge":-2,
"formula":"C103H170O41P2",
"notes":{
"original_bigg_ids":[
"udcdp2Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp2Oag"
],
"metanetx.chemical":[
"MNXM148548"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpacgal_p",
"name":"UDP-N-acetyl-D-galactosamine",
"compartment":"p",
"charge":-2,
"formula":"C17H25N3O17P2",
"notes":{
"original_bigg_ids":[
"udpacgal_p"
]
},
"annotation":{
"bigg.metabolite":[
"udpacgal"
],
"biocyc":[
"META:UDP-N-ACETYL-GALACTOSAMINE"
],
"chebi":[
"CHEBI:16650",
"CHEBI:13455",
"CHEBI:57847",
"CHEBI:22112",
"CHEBI:13470",
"CHEBI:9820"
],
"inchi_key":[
"LFTYTUAZOPRMMI-LDDHHVEYSA-L"
],
"kegg.compound":[
"C00203"
],
"kegg.glycan":[
"G10611"
],
"metanetx.chemical":[
"MNXM162233"
],
"reactome.compound":[
"735700"
],
"sabiork":[
"1972"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00175"
]
}
},
{
"id":"udcdp3Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-3x",
"compartment":"p",
"charge":-2,
"formula":"C127H210O58P2",
"notes":{
"original_bigg_ids":[
"udcdp3Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp3Oag"
],
"metanetx.chemical":[
"MNXM148549"
],
"sbo":"SBO:0000247"
}
},
{
"id":"rml_c",
"name":"L-Rhamnulose",
"compartment":"c",
"charge":0,
"formula":"C6H12O5",
"notes":{
"original_bigg_ids":[
"rml_c"
]
},
"annotation":{
"bigg.metabolite":[
"rml"
],
"biocyc":[
"META:CPD-16566"
],
"chebi":[
"CHEBI:6293",
"CHEBI:13161",
"CHEBI:17897",
"CHEBI:21380",
"CHEBI:58316"
],
"hmdb":[
"HMDB10207"
],
"inchi_key":[
"QZNPNKJXABGCRC-FUTKDDECSA-N"
],
"kegg.compound":[
"C00861"
],
"metanetx.chemical":[
"MNXM1750"
],
"sabiork":[
"1598"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00642"
]
}
},
{
"id":"uacgam_p",
"name":"UDP-N-acetyl-D-glucosamine",
"compartment":"p",
"charge":-2,
"formula":"C17H25N3O17P2",
"notes":{
"original_bigg_ids":[
"uacgam_p"
]
},
"annotation":{
"bigg.metabolite":[
"uacgam"
],
"biocyc":[
"META:UDP-N-ACETYL-D-GLUCOSAMINE"
],
"chebi":[
"CHEBI:13473",
"CHEBI:22115",
"CHEBI:9823",
"CHEBI:13475",
"CHEBI:13456",
"CHEBI:13476",
"CHEBI:46243",
"CHEBI:57705",
"CHEBI:46287",
"CHEBI:16264"
],
"hmdb":[
"HMDB00290",
"HMDB62760"
],
"inchi_key":[
"LFTYTUAZOPRMMI-CFRASDGPSA-L"
],
"kegg.compound":[
"C00043"
],
"kegg.glycan":[
"G10610"
],
"lipidmaps":[
"LMSL01010002"
],
"metanetx.chemical":[
"MNXM47"
],
"reactome.compound":[
"162756",
"914003",
"3499326"
],
"sabiork":[
"1925"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00037"
]
}
},
{
"id":"rml1p_c",
"name":"L-Rhamnulose 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O8P",
"notes":{
"original_bigg_ids":[
"rml1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"rml1p"
],
"biocyc":[
"META:RHAMNULOSE-1P"
],
"chebi":[
"CHEBI:58313",
"CHEBI:17892",
"CHEBI:6294",
"CHEBI:13162",
"CHEBI:21381"
],
"inchi_key":[
"KNYGWWDTPGSEPD-OTWZMJIISA-L"
],
"kegg.compound":[
"C01131"
],
"metanetx.chemical":[
"MNXM1675"
],
"sabiork":[
"1599"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00831"
]
}
},
{
"id":"udcdp4Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-4x",
"compartment":"p",
"charge":-2,
"formula":"C151H250O75P2",
"notes":{
"original_bigg_ids":[
"udcdp4Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp4Oag"
],
"metanetx.chemical":[
"MNXM148550"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udcdp5Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-5x",
"compartment":"p",
"charge":-2,
"formula":"C175H290O92P2",
"notes":{
"original_bigg_ids":[
"udcdp5Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp5Oag"
],
"metanetx.chemical":[
"MNXM148551"
],
"sbo":"SBO:0000247"
}
},
{
"id":"rmn_p",
"name":"L-Rhamnose",
"compartment":"p",
"charge":0,
"formula":"C6H12O5",
"notes":{
"original_bigg_ids":[
"rmn_p"
]
},
"annotation":{
"bigg.metabolite":[
"rmn"
],
"biocyc":[
"META:CPD-15405",
"META:L-rhamnopyranose",
"META:L-rhamnose"
],
"chebi":[
"CHEBI:45427",
"CHEBI:62346",
"CHEBI:6292",
"CHEBI:57622",
"CHEBI:21378",
"CHEBI:26546",
"CHEBI:16055",
"CHEBI:62345",
"CHEBI:13160"
],
"hmdb":[
"HMDB00849"
],
"inchi_key":[
"PNNNRSAQSRJVSB-BXKVDMCESA-N"
],
"kegg.compound":[
"C00507"
],
"metanetx.chemical":[
"MNXM2967"
],
"sabiork":[
"1595"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00396",
"cpd27379"
]
}
},
{
"id":"uacmam_c",
"name":"UDP-N-acetyl-D-mannosamine",
"compartment":"c",
"charge":-2,
"formula":"C17H25N3O17P2",
"notes":{
"original_bigg_ids":[
"uacmam_c"
]
},
"annotation":{
"bigg.metabolite":[
"uacmam"
],
"biocyc":[
"META:UDP-MANNAC"
],
"chebi":[
"CHEBI:13474",
"CHEBI:22116",
"CHEBI:57715",
"CHEBI:13457",
"CHEBI:68678",
"CHEBI:68623",
"CHEBI:9824",
"CHEBI:16287"
],
"hmdb":[
"HMDB13112"
],
"inchi_key":[
"LFTYTUAZOPRMMI-ZYQOOJPVSA-L"
],
"kegg.compound":[
"C01170"
],
"kegg.glycan":[
"G11112"
],
"metanetx.chemical":[
"MNXM722740"
],
"sabiork":[
"2263"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00861"
]
}
},
{
"id":"s7p_c",
"name":"Sedoheptulose 7-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C7H13O10P",
"notes":{
"original_bigg_ids":[
"s7p_c"
]
},
"annotation":{
"bigg.metabolite":[
"s7p"
],
"biocyc":[
"META:D-SEDOHEPTULOSE-7-P"
],
"chebi":[
"CHEBI:4244",
"CHEBI:15073",
"CHEBI:15721",
"CHEBI:26621",
"CHEBI:9083",
"CHEBI:15074",
"CHEBI:57483"
],
"hmdb":[
"HMDB01068",
"HMDB62754"
],
"inchi_key":[
"JDTUMPKOJBQPKX-GBNDHIKLSA-L"
],
"kegg.compound":[
"C05382"
],
"metanetx.chemical":[
"MNXM271"
],
"reactome.compound":[
"29882"
],
"sabiork":[
"1618",
"1325"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00238"
]
}
},
{
"id":"udcdp6Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-6x",
"compartment":"p",
"charge":-2,
"formula":"C199H330O109P2",
"notes":{
"original_bigg_ids":[
"udcdp6Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp6Oag"
],
"metanetx.chemical":[
"MNXM148552"
],
"sbo":"SBO:0000247"
}
},
{
"id":"u3aga_c",
"name":"UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine",
"compartment":"c",
"charge":-2,
"formula":"C31H51N3O19P2",
"notes":{
"original_bigg_ids":[
"u3aga_c"
]
},
"annotation":{
"bigg.metabolite":[
"u3aga"
],
"biocyc":[
"META:UDP-OHMYR-ACETYLGLUCOSAMINE"
],
"chebi":[
"CHEBI:61537",
"CHEBI:61494"
],
"inchi_key":[
"TZSJGZGYQDNRRX-MPLCHSTDSA-L"
],
"kegg.compound":[
"C04738"
],
"metanetx.chemical":[
"MNXM2157"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02886"
]
}
},
{
"id":"udcdp7Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-7x",
"compartment":"p",
"charge":-2,
"formula":"C223H370O126P2",
"notes":{
"original_bigg_ids":[
"udcdp7Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp7Oag"
],
"metanetx.chemical":[
"MNXM148553"
],
"sbo":"SBO:0000247"
}
},
{
"id":"sucorn_c",
"name":"N2-Succinyl-L-ornithine",
"compartment":"c",
"charge":-1,
"formula":"C9H15N2O5",
"notes":{
"original_bigg_ids":[
"sucorn_c"
]
},
"annotation":{
"bigg.metabolite":[
"sucorn"
],
"biocyc":[
"META:N2-SUCCINYLORNITHINE"
],
"chebi":[
"CHEBI:21822",
"CHEBI:58514",
"CHEBI:27574",
"CHEBI:7375",
"CHEBI:45896"
],
"hmdb":[
"HMDB01199"
],
"inchi_key":[
"VWXQFHJBQHTHMK-LURJTMIESA-M"
],
"kegg.compound":[
"C03415"
],
"metanetx.chemical":[
"MNXM1152"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02160"
]
}
},
{
"id":"uaccg_c",
"name":"UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine",
"compartment":"c",
"charge":-3,
"formula":"C20H26N3O19P2",
"notes":{
"original_bigg_ids":[
"uaccg_c"
]
},
"annotation":{
"bigg.metabolite":[
"uaccg"
],
"biocyc":[
"META:UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE"
],
"chebi":[
"CHEBI:68507",
"CHEBI:16435",
"CHEBI:22110",
"CHEBI:13467",
"CHEBI:13466",
"CHEBI:68483",
"CHEBI:57771",
"CHEBI:9818"
],
"inchi_key":[
"BEGZZYPUNCJHKP-DBYWSUQTSA-K"
],
"kegg.compound":[
"C04631"
],
"metanetx.chemical":[
"MNXM1688"
],
"sabiork":[
"7450"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02820"
]
}
},
{
"id":"sarcs_c",
"name":"Sarcosine C3H7NO2",
"compartment":"c",
"charge":0,
"formula":"C3H7NO2",
"notes":{
"original_bigg_ids":[
"sarcs_c"
]
},
"annotation":{
"bigg.metabolite":[
"sarcs"
],
"biocyc":[
"META:SARCOSINE"
],
"chebi":[
"CHEBI:46915",
"CHEBI:45614",
"CHEBI:45531",
"CHEBI:57433",
"CHEBI:21765",
"CHEBI:45381",
"CHEBI:45442",
"CHEBI:12609",
"CHEBI:9029",
"CHEBI:10876",
"CHEBI:15065",
"CHEBI:15611",
"CHEBI:46842"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/27b2c2ad-5547-4da6-b399-abb5483b5499",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/e63c98cd-666c-419b-ac72-d6ffddb140b3"
],
"hmdb":[
"HMDB00271"
],
"inchi_key":[
"FSYKKLYZXJSNPZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00213"
],
"metanetx.chemical":[
"MNXM300"
],
"reactome.compound":[
"6797917",
"5359017"
],
"sabiork":[
"1976"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00183"
]
}
},
{
"id":"udcdp8Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-8x",
"compartment":"p",
"charge":-2,
"formula":"C247H410O143P2",
"notes":{
"original_bigg_ids":[
"udcdp8Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp8Oag"
],
"metanetx.chemical":[
"MNXM148554"
],
"sbo":"SBO:0000247"
}
},
{
"id":"uama_c",
"name":"UDP-N-acetylmuramoyl-L-alanine",
"compartment":"c",
"charge":-3,
"formula":"C23H33N4O20P2",
"notes":{
"original_bigg_ids":[
"uama_c"
]
},
"annotation":{
"bigg.metabolite":[
"uama"
],
"biocyc":[
"META:CPD0-1456"
],
"chebi":[
"CHEBI:22123",
"CHEBI:57953",
"CHEBI:13478",
"CHEBI:84726",
"CHEBI:9830",
"CHEBI:83898",
"CHEBI:16932",
"CHEBI:13459"
],
"inchi_key":[
"NTMMCWJNQNKACG-KBKUWGQMSA-K"
],
"kegg.compound":[
"C01212"
],
"metanetx.chemical":[
"MNXM1953"
],
"sabiork":[
"2265"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29609",
"cpd00890"
]
}
},
{
"id":"udcdp9Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-9x",
"compartment":"p",
"charge":-2,
"formula":"C271H450O160P2",
"notes":{
"original_bigg_ids":[
"udcdp9Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp9Oag"
],
"metanetx.chemical":[
"MNXM148555"
],
"sbo":"SBO:0000247"
}
},
{
"id":"sbt6p_c",
"name":"D-Sorbitol 6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H13O9P",
"notes":{
"original_bigg_ids":[
"sbt6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"sbt6p"
],
"biocyc":[
"META:D-SORBITOL-6-P"
],
"chebi":[
"CHEBI:21093",
"CHEBI:60084",
"CHEBI:4247",
"CHEBI:17044",
"CHEBI:17116",
"CHEBI:13021",
"CHEBI:45426",
"CHEBI:15094",
"CHEBI:9202"
],
"inchi_key":[
"GACTWZZMVMUKNG-SLPGGIOYSA-L"
],
"kegg.compound":[
"C01096"
],
"metanetx.chemical":[
"MNXM393"
],
"sabiork":[
"1696"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00804"
]
}
},
{
"id":"sbt__D_p",
"name":"D-Sorbitol",
"compartment":"p",
"charge":0,
"formula":"C6H14O6",
"notes":{
"original_bigg_ids":[
"sbt_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"sbt__D"
],
"biocyc":[
"META:SORBITOL"
],
"chebi":[
"CHEBI:33796",
"CHEBI:21091",
"CHEBI:9201",
"CHEBI:17220",
"CHEBI:17924",
"CHEBI:26724",
"CHEBI:15093",
"CHEBI:26726",
"CHEBI:30911",
"CHEBI:12954",
"CHEBI:45559",
"CHEBI:4246",
"CHEBI:33795",
"CHEBI:13020"
],
"hmdb":[
"HMDB00247"
],
"inchi_key":[
"FBPFZTCFMRRESA-JGWLITMVSA-N"
],
"kegg.compound":[
"C00794"
],
"kegg.drug":[
"D00096"
],
"metanetx.chemical":[
"MNXM469"
],
"reactome.compound":[
"5652213"
],
"sabiork":[
"2148",
"2156"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00588"
]
}
},
{
"id":"udcdp10Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-10x",
"compartment":"p",
"charge":-2,
"formula":"C295H490O177P2",
"notes":{
"original_bigg_ids":[
"udcdp10Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp10Oag"
],
"metanetx.chemical":[
"MNXM148537"
],
"sbo":"SBO:0000247"
}
},
{
"id":"uamr_c",
"name":"UDP-N-acetylmuramate",
"compartment":"c",
"charge":-3,
"formula":"C20H28N3O19P2",
"notes":{
"original_bigg_ids":[
"uamr_c"
]
},
"annotation":{
"bigg.metabolite":[
"uamr"
],
"biocyc":[
"META:UDP-N-ACETYLMURAMATE"
],
"chebi":[
"CHEBI:70757",
"CHEBI:9827",
"CHEBI:22120",
"CHEBI:58309",
"CHEBI:13477",
"CHEBI:70765",
"CHEBI:13458",
"CHEBI:17882"
],
"inchi_key":[
"NQBRVZNDBBMBLJ-MQTLHLSBSA-K"
],
"kegg.compound":[
"C01050"
],
"metanetx.chemical":[
"MNXM722733"
],
"sabiork":[
"2230"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00773"
]
}
},
{
"id":"udcdp11Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-11x",
"compartment":"p",
"charge":-2,
"formula":"C319H530O194P2",
"notes":{
"original_bigg_ids":[
"udcdp11Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp11Oag"
],
"metanetx.chemical":[
"MNXM148538"
],
"sbo":"SBO:0000247"
}
},
{
"id":"sl26da_c",
"name":"N-Succinyl-LL-2,6-diaminoheptanedioate",
"compartment":"c",
"charge":-2,
"formula":"C11H16N2O7",
"notes":{
"original_bigg_ids":[
"sl26da_c"
]
},
"annotation":{
"bigg.metabolite":[
"sl26da"
],
"biocyc":[
"META:N-SUCCINYLLL-2-6-DIAMINOPIMELATE"
],
"chebi":[
"CHEBI:21791",
"CHEBI:21792",
"CHEBI:7342",
"CHEBI:58087",
"CHEBI:12617",
"CHEBI:12618",
"CHEBI:17279"
],
"hmdb":[
"HMDB12267"
],
"inchi_key":[
"GLXUWZBUPATPBR-BQBZGAKWSA-L"
],
"kegg.compound":[
"C04421"
],
"metanetx.chemical":[
"MNXM1488"
],
"sabiork":[
"7300"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02698"
]
}
},
{
"id":"udpgal_c",
"name":"UDPgalactose",
"compartment":"c",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpgal_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpgal"
],
"biocyc":[
"META:CPD-14553"
],
"chebi":[
"CHEBI:22100",
"CHEBI:9811",
"CHEBI:18307",
"CHEBI:42751",
"CHEBI:13495",
"CHEBI:66914",
"CHEBI:67119",
"CHEBI:13487",
"CHEBI:58439"
],
"hmdb":[
"HMDB62573",
"HMDB00302"
],
"inchi_key":[
"HSCJRCZFDFQWRP-ABVWGUQPSA-L"
],
"kegg.compound":[
"C00052"
],
"kegg.glycan":[
"G10609"
],
"metanetx.chemical":[
"MNXM89795"
],
"reactome.compound":[
"735682",
"29452"
],
"sabiork":[
"1283",
"3919"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00043",
"cpd30770"
]
}
},
{
"id":"sl2a6o_c",
"name":"N-Succinyl-2-L-amino-6-oxoheptanedioate",
"compartment":"c",
"charge":-3,
"formula":"C11H12NO8",
"notes":{
"original_bigg_ids":[
"sl2a6o_c"
]
},
"annotation":{
"bigg.metabolite":[
"sl2a6o"
],
"biocyc":[
"META:N-SUCCINYL-2-AMINO-6-KETOPIMELATE"
],
"chebi":[
"CHEBI:21790",
"CHEBI:35266",
"CHEBI:15685",
"CHEBI:10967",
"CHEBI:12616",
"CHEBI:7340",
"CHEBI:21789"
],
"hmdb":[
"HMDB12266"
],
"inchi_key":[
"SDVXSCSNVVZWDD-LURJTMIESA-K"
],
"kegg.compound":[
"C04462"
],
"metanetx.chemical":[
"MNXM1563"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02724"
]
}
},
{
"id":"udcdp12Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-12x",
"compartment":"p",
"charge":-2,
"formula":"C343H570O211P2",
"notes":{
"original_bigg_ids":[
"udcdp12Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp12Oag"
],
"metanetx.chemical":[
"MNXM148539"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpgal_p",
"name":"UDPgalactose",
"compartment":"p",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpgal_p"
]
},
"annotation":{
"bigg.metabolite":[
"udpgal"
],
"biocyc":[
"META:CPD-14553"
],
"chebi":[
"CHEBI:22100",
"CHEBI:9811",
"CHEBI:18307",
"CHEBI:42751",
"CHEBI:13495",
"CHEBI:66914",
"CHEBI:67119",
"CHEBI:13487",
"CHEBI:58439"
],
"hmdb":[
"HMDB62573",
"HMDB00302"
],
"inchi_key":[
"HSCJRCZFDFQWRP-ABVWGUQPSA-L"
],
"kegg.compound":[
"C00052"
],
"kegg.glycan":[
"G10609"
],
"metanetx.chemical":[
"MNXM89795"
],
"reactome.compound":[
"735682",
"29452"
],
"sabiork":[
"1283",
"3919"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00043",
"cpd30770"
]
}
},
{
"id":"udcdp13Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-13x",
"compartment":"p",
"charge":-2,
"formula":"C367H610O228P2",
"notes":{
"original_bigg_ids":[
"udcdp13Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp13Oag"
],
"metanetx.chemical":[
"MNXM148540"
],
"sbo":"SBO:0000247"
}
},
{
"id":"selnp_c",
"name":"Selenophosphate",
"compartment":"c",
"charge":-1,
"formula":"H2O3PSe",
"notes":{
"original_bigg_ids":[
"selnp_c"
]
},
"annotation":{
"bigg.metabolite":[
"selnp"
],
"biocyc":[
"META:SEPO3"
],
"chebi":[
"CHEBI:9101",
"CHEBI:15078",
"CHEBI:64331",
"CHEBI:16144",
"CHEBI:58618",
"CHEBI:29269"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/2375fd0c-e578-4771-9d3f-030d6dc30c7c"
],
"hmdb":[
"HMDB06407",
"HMDB03840"
],
"inchi_key":[
"JRPHGDYSKGJTKZ-UHFFFAOYSA-K"
],
"kegg.compound":[
"C05172"
],
"metanetx.chemical":[
"MNXM1339"
],
"reactome.compound":[
"5357690"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03078"
]
}
},
{
"id":"udpglcur_c",
"name":"UDP-D-glucuronate",
"compartment":"c",
"charge":-3,
"formula":"C15H19N2O18P2",
"notes":{
"original_bigg_ids":[
"udpglcur_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpglcur"
],
"biocyc":[
"META:UDP-GLUCURONATE"
],
"chebi":[
"CHEBI:46309",
"CHEBI:13489",
"CHEBI:13506",
"CHEBI:22104",
"CHEBI:58052",
"CHEBI:9846",
"CHEBI:17200"
],
"hmdb":[
"HMDB01384",
"HMDB00935"
],
"inchi_key":[
"HDYANYHVCAPMJV-LXQIFKJMSA-K"
],
"kegg.compound":[
"C00167"
],
"kegg.glycan":[
"G10612"
],
"metanetx.chemical":[
"MNXM87"
],
"reactome.compound":[
"174384",
"158601",
"1889970"
],
"sabiork":[
"22782",
"3916"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00144"
]
}
},
{
"id":"udcdp14Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-14x",
"compartment":"p",
"charge":-2,
"formula":"C391H650O245P2",
"notes":{
"original_bigg_ids":[
"udcdp14Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp14Oag"
],
"metanetx.chemical":[
"MNXM148541"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpLa4o_c",
"name":"UDP-4-keto-pyranose",
"compartment":"c",
"charge":-2,
"formula":"C14H18N2O16P2",
"notes":{
"original_bigg_ids":[
"udpLa4o_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpLa4o"
],
"biocyc":[
"META:5-BETA-L-THREO-PENTAPYRANOSYL-4-ULOSE-"
],
"chebi":[
"CHEBI:58710",
"CHEBI:47028"
],
"inchi_key":[
"URJZIQLTPCJVMW-QNSCKLTRSA-L"
],
"kegg.compound":[
"C16155"
],
"metanetx.chemical":[
"MNXM1505"
],
"sabiork":[
"28100"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14876",
"cpd15578"
]
}
},
{
"id":"udcdp15Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-15x",
"compartment":"p",
"charge":-2,
"formula":"C415H690O262P2",
"notes":{
"original_bigg_ids":[
"udcdp15Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp15Oag"
],
"metanetx.chemical":[
"MNXM148542"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpglcur_p",
"name":"UDP-D-glucuronate",
"compartment":"p",
"charge":-3,
"formula":"C15H19N2O18P2",
"notes":{
"original_bigg_ids":[
"udpglcur_p"
]
},
"annotation":{
"bigg.metabolite":[
"udpglcur"
],
"biocyc":[
"META:UDP-GLUCURONATE"
],
"chebi":[
"CHEBI:46309",
"CHEBI:13489",
"CHEBI:13506",
"CHEBI:22104",
"CHEBI:58052",
"CHEBI:9846",
"CHEBI:17200"
],
"hmdb":[
"HMDB01384",
"HMDB00935"
],
"inchi_key":[
"HDYANYHVCAPMJV-LXQIFKJMSA-K"
],
"kegg.compound":[
"C00167"
],
"kegg.glycan":[
"G10612"
],
"metanetx.chemical":[
"MNXM87"
],
"reactome.compound":[
"174384",
"158601",
"1889970"
],
"sabiork":[
"22782",
"3916"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00144"
]
}
},
{
"id":"udcdp16Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-16x",
"compartment":"p",
"charge":-2,
"formula":"C439H730O279P2",
"notes":{
"original_bigg_ids":[
"udcdp16Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp16Oag"
],
"metanetx.chemical":[
"MNXM148543"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpg_p",
"name":"UDPglucose",
"compartment":"p",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpg_p"
]
},
"annotation":{
"bigg.metabolite":[
"udpg"
],
"biocyc":[
"META:CPD-12575"
],
"chebi":[
"CHEBI:13505",
"CHEBI:52249",
"CHEBI:9845",
"CHEBI:46228",
"CHEBI:46229",
"CHEBI:58367",
"CHEBI:13498",
"CHEBI:28532",
"CHEBI:42885",
"CHEBI:27234",
"CHEBI:18066",
"CHEBI:9895",
"CHEBI:58885",
"CHEBI:22103"
],
"hmdb":[
"HMDB60079"
],
"inchi_key":[
"HSCJRCZFDFQWRP-RDKQLNKOSA-L"
],
"kegg.compound":[
"C00029"
],
"kegg.glycan":[
"G10608"
],
"metanetx.chemical":[
"MNXM722710"
],
"reactome.compound":[
"173594",
"744227",
"29410"
],
"sabiork":[
"3918",
"1277"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00026",
"cpd28293"
]
}
},
{
"id":"udcdp17Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-17x",
"compartment":"p",
"charge":-2,
"formula":"C463H770O296P2",
"notes":{
"original_bigg_ids":[
"udcdp17Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp17Oag"
],
"metanetx.chemical":[
"MNXM148544"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udcdp18Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-18x",
"compartment":"p",
"charge":-2,
"formula":"C487H810O313P2",
"notes":{
"original_bigg_ids":[
"udcdp18Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp18Oag"
],
"metanetx.chemical":[
"MNXM148545"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpLa4n_c",
"name":"Uridine 5''-diphospho-{beta}-4-deoxy-4-amino-L-arabinose",
"compartment":"c",
"charge":-1,
"formula":"C14H22N3O15P2",
"notes":{
"original_bigg_ids":[
"udpLa4n_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpLa4n"
],
"biocyc":[
"META:UDP-4-AMINO-4-DEOXY-L-ARABINOSE"
],
"chebi":[
"CHEBI:58708",
"CHEBI:47025"
],
"inchi_key":[
"GWBAKYBSWHQNMQ-IAZOVDBXSA-M"
],
"kegg.compound":[
"C16153"
],
"metanetx.chemical":[
"MNXM1786"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14874"
]
}
},
{
"id":"udcdp19Oag_p",
"name":"Undecaprenyl-diphosphate-O-antigene-19x",
"compartment":"p",
"charge":-2,
"formula":"C511H850O330P2",
"notes":{
"original_bigg_ids":[
"udcdp19Oag_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcdp19Oag"
],
"metanetx.chemical":[
"MNXM148546"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpLa4fn_c",
"name":"Uridine 5''-diphospho-{beta}-4-deoxy-4-formamido-L-arabinose",
"compartment":"c",
"charge":-2,
"formula":"C15H21N3O16P2",
"notes":{
"original_bigg_ids":[
"udpLa4fn_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpLa4fn"
],
"biocyc":[
"META:UDP-L-ARA4-FORMYL-N"
],
"chebi":[
"CHEBI:47027",
"CHEBI:58709"
],
"inchi_key":[
"QGYFHZBDXXNYAX-RTXATJJPSA-L"
],
"kegg.compound":[
"C16154"
],
"metanetx.chemical":[
"MNXM1390"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd14875"
]
}
},
{
"id":"cdpglc_c",
"name":"CDP-glucose",
"compartment":"c",
"charge":-2,
"formula":"C15H23N3O16P2",
"notes":{
"original_bigg_ids":[
"cdpglc_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdpglc"
],
"biocyc":[
"META:CDP-D-GLUCOSE"
],
"chebi":[
"CHEBI:3271",
"CHEBI:28942",
"CHEBI:13264",
"CHEBI:20870"
],
"hmdb":[
"HMDB03369"
],
"kegg.compound":[
"C00501"
],
"metanetx.chemical":[
"MNXM45895"
],
"sabiork":[
"3920"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00390"
]
}
},
{
"id":"sertrna_sec_c",
"name":"L-Seryl-tRNA(Sec)",
"compartment":"c",
"charge":1,
"formula":"C3H6NO2R",
"notes":{
"original_bigg_ids":[
"sertrna_sec__c"
]
},
"annotation":{
"bigg.metabolite":[
"sertrna_sec"
],
"chebi":[
"CHEBI:13170",
"CHEBI:74589"
],
"kegg.compound":[
"C06481"
],
"metanetx.chemical":[
"MNXM90476"
],
"reactome.compound":[
"5357730",
"5603447"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15565"
]
}
},
{
"id":"uLa4n_c",
"name":"Undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose",
"compartment":"c",
"charge":0,
"formula":"C60H100N1O7P1",
"notes":{
"original_bigg_ids":[
"uLa4n_c"
]
},
"annotation":{
"bigg.metabolite":[
"uLa4n"
],
"metanetx.chemical":[
"MNXM90891"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15576"
]
}
},
{
"id":"sectrna_c",
"name":"L-Selenocysteinyl-tRNA(Sec)",
"compartment":"c",
"charge":1,
"formula":"C3H6NOSeR",
"notes":{
"original_bigg_ids":[
"sectrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"sectrna"
],
"kegg.compound":[
"C06482"
],
"metanetx.chemical":[
"MNXM91632"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15563"
]
}
},
{
"id":"cdp4dh6doglc_c",
"name":"CDP-4-dehydro-6-deoxy-D-glucose",
"compartment":"c",
"charge":-2,
"formula":"C15H21N3O15P2",
"notes":{
"original_bigg_ids":[
"cdp4dh6doglc_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdp4dh6doglc"
],
"biocyc":[
"META:CPD-658"
],
"chebi":[
"CHEBI:20863",
"CHEBI:13262",
"CHEBI:3264",
"CHEBI:17494",
"CHEBI:58166"
],
"inchi_key":[
"PUBYMNIINUUJLL-JOCQNMFKSA-L"
],
"kegg.compound":[
"C01219"
],
"metanetx.chemical":[
"MNXM1370"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00897"
]
}
},
{
"id":"um4p_c",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine",
"compartment":"c",
"charge":-4,
"formula":"C38H56N8O27P2",
"notes":{
"original_bigg_ids":[
"um4p_c"
]
},
"annotation":{
"bigg.metabolite":[
"um4p"
],
"metanetx.chemical":[
"MNXM147329"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15579"
]
}
},
{
"id":"cdp4dh36ddglc_c",
"name":"CDP-4-dehydro-3-6-dideoxy-D-glucose",
"compartment":"c",
"charge":-2,
"formula":"C15H21N3O14P2",
"notes":{
"original_bigg_ids":[
"cdp4dh36ddglc_c"
]
},
"annotation":{
"bigg.metabolite":[
"cdp4dh36ddglc"
],
"metanetx.chemical":[
"MNXM148139"
],
"sbo":"SBO:0000247"
}
},
{
"id":"seln_c",
"name":"Selenide",
"compartment":"c",
"charge":-1,
"formula":"HSe",
"notes":{
"original_bigg_ids":[
"seln_c"
]
},
"annotation":{
"bigg.metabolite":[
"seln"
],
"biocyc":[
"META:SE-2",
"META:CPD-678"
],
"chebi":[
"CHEBI:9089",
"CHEBI:15076",
"CHEBI:24638",
"CHEBI:29317",
"CHEBI:30485",
"CHEBI:16503",
"CHEBI:47675"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/1e71e9cf-365f-47bc-a252-f0e75f597818"
],
"hmdb":[
"HMDB11110"
],
"inchi_key":[
"SPVXKVOXSXTJOY-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01528"
],
"metanetx.chemical":[
"MNXM92652"
],
"reactome.compound":[
"5357660"
],
"sabiork":[
"5640"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd28148",
"cpd01078"
]
}
},
{
"id":"uLa4fn_c",
"name":"Undecaprenyl phosphate-4-amino-4-formyl-L-arabinose",
"compartment":"c",
"charge":-1,
"formula":"C61H99N1O8P1",
"notes":{
"original_bigg_ids":[
"uLa4fn_c"
]
},
"annotation":{
"bigg.metabolite":[
"uLa4fn"
],
"biocyc":[
"META:CPD0-2153"
],
"inchi_key":[
"YYVYMEXYAGAGTM-MOVGJWTDSA-M"
],
"metanetx.chemical":[
"MNXM88505"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15575"
]
}
},
{
"id":"sertrna_c",
"name":"L-Seryl-tRNA(Ser)",
"compartment":"c",
"charge":1,
"formula":"C3H6NO2R",
"notes":{
"original_bigg_ids":[
"sertrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"sertrna"
],
"kegg.compound":[
"C02553"
],
"metanetx.chemical":[
"MNXM90842"
],
"sabiork":[
"3868"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12132"
]
}
},
{
"id":"salchs4_e",
"name":"Salmochelin-S4",
"compartment":"e",
"charge":0,
"formula":"C42H47N3O25",
"notes":{
"original_bigg_ids":[
"salchs4_e"
]
},
"annotation":{
"bigg.metabolite":[
"salchs4"
],
"metanetx.chemical":[
"MNXM145924"
],
"sbo":"SBO:0000247"
}
},
{
"id":"uppg3_c",
"name":"Uroporphyrinogen III",
"compartment":"c",
"charge":-8,
"formula":"C40H36N4O16",
"notes":{
"original_bigg_ids":[
"uppg3_c"
]
},
"annotation":{
"bigg.metabolite":[
"uppg3"
],
"biocyc":[
"META:UROPORPHYRINOGEN-III"
],
"chebi":[
"CHEBI:15437",
"CHEBI:15300",
"CHEBI:9905",
"CHEBI:27257",
"CHEBI:57308"
],
"hmdb":[
"HMDB01086"
],
"inchi_key":[
"HUHWZXWWOFSFKF-UHFFFAOYSA-F"
],
"kegg.compound":[
"C01051"
],
"metanetx.chemical":[
"MNXM414"
],
"reactome.compound":[
"189407"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00774"
]
}
},
{
"id":"salchs4fe_e",
"name":"Salmochelin-S4-Fe-III",
"compartment":"e",
"charge":3,
"formula":"C42FeH47N3O25",
"notes":{
"original_bigg_ids":[
"salchs4fe_e"
]
},
"annotation":{
"bigg.metabolite":[
"salchs4fe"
],
"metanetx.chemical":[
"MNXM146231"
],
"sbo":"SBO:0000247"
}
},
{
"id":"trnaser_c",
"name":"TRNA(Ser)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaser_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaser"
],
"biocyc":[
"META:SER-tRNAs"
],
"chebi":[
"CHEBI:15186",
"CHEBI:29179",
"CHEBI:10689"
],
"kegg.compound":[
"C01650"
],
"metanetx.chemical":[
"MNXM91028"
],
"reactome.compound":[
"379761",
"379762"
],
"sabiork":[
"3848"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11921",
"cpd28152"
]
}
},
{
"id":"ura_p",
"name":"Uracil",
"compartment":"p",
"charge":0,
"formula":"C4H4N2O2",
"notes":{
"original_bigg_ids":[
"ura_p"
]
},
"annotation":{
"bigg.metabolite":[
"ura"
],
"biocyc":[
"META:URACIL"
],
"chebi":[
"CHEBI:27210",
"CHEBI:43254",
"CHEBI:15288",
"CHEBI:46375",
"CHEBI:17568",
"CHEBI:9882"
],
"hmdb":[
"HMDB00300"
],
"inchi_key":[
"ISAKRJDGNUQOIC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00106"
],
"kegg.drug":[
"D00027",
"D09776"
],
"metanetx.chemical":[
"MNXM158"
],
"reactome.compound":[
"83962"
],
"sabiork":[
"61"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00092"
]
}
},
{
"id":"trnasecys_c",
"name":"TRNA(SeCys)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnasecys_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnasecys"
],
"metanetx.chemical":[
"MNXM93990"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15573"
]
}
},
{
"id":"salchs4fe_p",
"name":"Salmochelin-S4-Fe-III",
"compartment":"p",
"charge":3,
"formula":"C42FeH47N3O25",
"notes":{
"original_bigg_ids":[
"salchs4fe_p"
]
},
"annotation":{
"bigg.metabolite":[
"salchs4fe"
],
"metanetx.chemical":[
"MNXM146231"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs4fe_c",
"name":"Salmochelin-S4-Fe-III",
"compartment":"c",
"charge":3,
"formula":"C42FeH47N3O25",
"notes":{
"original_bigg_ids":[
"salchs4fe_c"
]
},
"annotation":{
"bigg.metabolite":[
"salchs4fe"
],
"metanetx.chemical":[
"MNXM146231"
],
"sbo":"SBO:0000247"
}
},
{
"id":"urea_p",
"name":"Urea CH4N2O",
"compartment":"p",
"charge":0,
"formula":"CH4N2O",
"notes":{
"original_bigg_ids":[
"urea_p"
]
},
"annotation":{
"bigg.metabolite":[
"urea"
],
"biocyc":[
"META:UREA"
],
"chebi":[
"CHEBI:134711",
"CHEBI:15292",
"CHEBI:16199",
"CHEBI:32285",
"CHEBI:48376",
"CHEBI:9888",
"CHEBI:27218",
"CHEBI:46379"
],
"envipath":[
"5882df9c-dae1-4d80-a40e-db4724271456/compound/a4a8116a-0fc4-4ad8-b192-1387a253bac6",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/e1054e0b-a299-4b89-b470-455c007d2bc6",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/f410026a-1678-4d69-b6ac-505c7b9fe316"
],
"hmdb":[
"HMDB00294"
],
"inchi_key":[
"XSQUKJJJFZCRTK-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00086"
],
"kegg.drug":[
"D01749",
"D10496",
"D00023"
],
"metanetx.chemical":[
"MNXM117"
],
"reactome.compound":[
"374061",
"29514",
"432019"
],
"sabiork":[
"1798"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00073"
]
}
},
{
"id":"Sfglutth_c",
"name":"S-Formylglutathione",
"compartment":"c",
"charge":-1,
"formula":"C11H16N3O7S",
"notes":{
"original_bigg_ids":[
"Sfglutth_c"
]
},
"annotation":{
"bigg.metabolite":[
"Sfglutth"
],
"biocyc":[
"META:CPD-548"
],
"chebi":[
"CHEBI:12746",
"CHEBI:22044",
"CHEBI:16225",
"CHEBI:12764",
"CHEBI:57688",
"CHEBI:8956"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d4e9e4f7-3585-4e9c-92d7-3860ef127777"
],
"hmdb":[
"HMDB01550",
"HMDB62625"
],
"inchi_key":[
"FHXAGOICBFGEBF-BQBZGAKWSA-M"
],
"kegg.compound":[
"C01031"
],
"metanetx.chemical":[
"MNXM952"
],
"reactome.compound":[
"5693723",
"5692249"
],
"sabiork":[
"2220"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00759"
]
}
},
{
"id":"urate_c",
"name":"Urate C5H4N4O3",
"compartment":"c",
"charge":0,
"formula":"C5H4N4O3",
"notes":{
"original_bigg_ids":[
"urate_c"
]
},
"annotation":{
"bigg.metabolite":[
"urate"
],
"biocyc":[
"META:CPD-15332",
"META:URATE",
"META:CPD-15041"
],
"chebi":[
"CHEBI:27216",
"CHEBI:46817",
"CHEBI:46814",
"CHEBI:46826",
"CHEBI:49051",
"CHEBI:9885",
"CHEBI:17775",
"CHEBI:46818",
"CHEBI:15290",
"CHEBI:46821",
"CHEBI:46824",
"CHEBI:46825",
"CHEBI:27226",
"CHEBI:46820",
"CHEBI:46823",
"CHEBI:46822",
"CHEBI:46455",
"CHEBI:30848",
"CHEBI:46811"
],
"hmdb":[
"HMDB00289"
],
"inchi_key":[
"LEHOTFFKMJEONL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00366"
],
"metanetx.chemical":[
"MNXM441"
],
"reactome.compound":[
"429056",
"30034"
],
"sabiork":[
"1870"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00300"
]
}
},
{
"id":"sucglu_c",
"name":"N2-Succinyl-L-glutamate",
"compartment":"c",
"charge":-3,
"formula":"C9H10NO7",
"notes":{
"original_bigg_ids":[
"sucglu_c"
]
},
"annotation":{
"bigg.metabolite":[
"sucglu"
],
"biocyc":[
"META:N2-SUCCINYLGLUTAMATE"
],
"chebi":[
"CHEBI:48957",
"CHEBI:58763",
"CHEBI:7373",
"CHEBI:21821"
],
"inchi_key":[
"JCNBNOQGFSXOML-YFKPBYRVSA-K"
],
"kegg.compound":[
"C05931"
],
"metanetx.chemical":[
"MNXM1757"
],
"sabiork":[
"24572"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03525"
]
}
},
{
"id":"salchs4_p",
"name":"Salmochelin-S4",
"compartment":"p",
"charge":0,
"formula":"C42H47N3O25",
"notes":{
"original_bigg_ids":[
"salchs4_p"
]
},
"annotation":{
"bigg.metabolite":[
"salchs4"
],
"metanetx.chemical":[
"MNXM145924"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs4_c",
"name":"Salmochelin-S4",
"compartment":"c",
"charge":0,
"formula":"C42H47N3O25",
"notes":{
"original_bigg_ids":[
"salchs4_c"
]
},
"annotation":{
"bigg.metabolite":[
"salchs4"
],
"metanetx.chemical":[
"MNXM145924"
],
"sbo":"SBO:0000247"
}
},
{
"id":"valtrna_c",
"name":"L-Valyl-tRNA(Val)",
"compartment":"c",
"charge":1,
"formula":"C5H10NOR",
"notes":{
"original_bigg_ids":[
"valtrna_c"
]
},
"annotation":{
"bigg.metabolite":[
"valtrna"
],
"chebi":[
"CHEBI:13187",
"CHEBI:29164",
"CHEBI:6322"
],
"kegg.compound":[
"C02554"
],
"metanetx.chemical":[
"MNXM90110"
],
"reactome.compound":[
"379782",
"379790"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd12133"
]
}
},
{
"id":"trnaval_c",
"name":"TRNA(Val)",
"compartment":"c",
"charge":0,
"formula":"R",
"notes":{
"original_bigg_ids":[
"trnaval_c"
]
},
"annotation":{
"bigg.metabolite":[
"trnaval"
],
"biocyc":[
"META:VAL-tRNAs"
],
"chebi":[
"CHEBI:10694",
"CHEBI:15191",
"CHEBI:29183"
],
"kegg.compound":[
"C01653"
],
"metanetx.chemical":[
"MNXM90885"
],
"reactome.compound":[
"379735",
"379793"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd11924",
"cpd28318"
]
}
},
{
"id":"salchsx_c",
"name":"Salmochelin-SX",
"compartment":"c",
"charge":-1,
"formula":"C16H21NO11",
"notes":{
"original_bigg_ids":[
"salchsx_c"
]
},
"annotation":{
"bigg.metabolite":[
"salchsx"
],
"metanetx.chemical":[
"MNXM146623"
],
"sbo":"SBO:0000247"
}
},
{
"id":"val__L_p",
"name":"L-Valine",
"compartment":"p",
"charge":0,
"formula":"C5H11NO2",
"notes":{
"original_bigg_ids":[
"val_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"val__L"
],
"biocyc":[
"META:VAL"
],
"chebi":[
"CHEBI:32859",
"CHEBI:57762",
"CHEBI:13186",
"CHEBI:16414",
"CHEBI:6321",
"CHEBI:21417",
"CHEBI:46418",
"CHEBI:46282",
"CHEBI:32852",
"CHEBI:32851",
"CHEBI:87977",
"CHEBI:32860",
"CHEBI:27266",
"CHEBI:46376",
"CHEBI:46484"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b2ec1d47-f20f-4b19-9b15-ac1a3c2159c5",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/65a4c231-5232-4f08-93e2-007eb0537f0e"
],
"hmdb":[
"HMDB00883",
"HMDB34366"
],
"inchi_key":[
"KZSNJWFQEVHDMF-BYPYZUCNSA-N"
],
"kegg.compound":[
"C16436",
"C00183"
],
"kegg.drug":[
"D00039"
],
"lipidmaps":[
"LMFA01100046"
],
"metanetx.chemical":[
"MNXM199"
],
"reactome.compound":[
"113540",
"29702"
],
"sabiork":[
"68",
"23113"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd15141",
"cpd00156"
]
}
},
{
"id":"salchsx_e",
"name":"Salmochelin-SX",
"compartment":"e",
"charge":-1,
"formula":"C16H21NO11",
"notes":{
"original_bigg_ids":[
"salchsx_e"
]
},
"annotation":{
"bigg.metabolite":[
"salchsx"
],
"metanetx.chemical":[
"MNXM146623"
],
"sbo":"SBO:0000247"
}
},
{
"id":"xan_p",
"name":"Xanthine",
"compartment":"p",
"charge":0,
"formula":"C5H4N4O2",
"notes":{
"original_bigg_ids":[
"xan_p"
]
},
"annotation":{
"bigg.metabolite":[
"xan"
],
"biocyc":[
"META:XANTHINE"
],
"chebi":[
"CHEBI:15318",
"CHEBI:10059",
"CHEBI:46377",
"CHEBI:48517",
"CHEBI:17712",
"CHEBI:27317"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/3cf4dbf8-ae84-49e6-b294-b5138cb94f75"
],
"hmdb":[
"HMDB00292"
],
"inchi_key":[
"LRFVTYWOQMYALW-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00385"
],
"metanetx.chemical":[
"MNXM174"
],
"reactome.compound":[
"30064"
],
"sabiork":[
"1871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00309"
]
}
},
{
"id":"salchsx_p",
"name":"Salmochelin-SX",
"compartment":"p",
"charge":-1,
"formula":"C16H21NO11",
"notes":{
"original_bigg_ids":[
"salchsx_p"
]
},
"annotation":{
"bigg.metabolite":[
"salchsx"
],
"metanetx.chemical":[
"MNXM146623"
],
"sbo":"SBO:0000247"
}
},
{
"id":"xyl__D_c",
"name":"D-Xylose",
"compartment":"c",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"xyl_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"xyl__D"
],
"biocyc":[
"META:D-Xylopyranose"
],
"chebi":[
"CHEBI:65327",
"CHEBI:53455"
],
"hmdb":[
"HMDB00098",
"HMDB03763"
],
"inchi_key":[
"SRBFZHDQGSBBOR-IOVATXLUSA-N"
],
"kegg.compound":[
"C00181"
],
"kegg.drug":[
"D06346"
],
"metanetx.chemical":[
"MNXM348"
],
"reactome.compound":[
"2090063"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00154"
]
}
},
{
"id":"acanth_c",
"name":"N-Acetylanthranilate",
"compartment":"c",
"charge":-1,
"formula":"C9H8NO3",
"notes":{
"original_bigg_ids":[
"acanth_c"
]
},
"annotation":{
"bigg.metabolite":[
"acanth"
],
"biocyc":[
"META:N-ACETYLANTHRANILATE"
],
"chebi":[
"CHEBI:12465",
"CHEBI:16803",
"CHEBI:36555",
"CHEBI:7194",
"CHEBI:19414",
"CHEBI:21602",
"CHEBI:32578"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/685af208-3a2e-4b98-875d-0c9154d9272c"
],
"inchi_key":[
"QSACCXVHEVWNMX-UHFFFAOYSA-M"
],
"kegg.compound":[
"C06332"
],
"metanetx.chemical":[
"MNXM1939"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03773"
]
}
},
{
"id":"feroxBfe_e",
"name":"Ferrioxamine-B-fe",
"compartment":"e",
"charge":1,
"formula":"C25H45FeN6O8",
"notes":{
"original_bigg_ids":[
"feroxBfe_e"
]
},
"annotation":{
"bigg.metabolite":[
"feroxBfe"
],
"metanetx.chemical":[
"MNXM146391"
],
"sbo":"SBO:0000247"
}
},
{
"id":"xylu__D_c",
"name":"D-Xylulose",
"compartment":"c",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"xylu_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"xylu__D"
],
"biocyc":[
"META:D-XYLULOSE"
],
"chebi":[
"CHEBI:4268",
"CHEBI:13035",
"CHEBI:46514",
"CHEBI:21120",
"CHEBI:17140"
],
"hmdb":[
"HMDB01644",
"HMDB00654"
],
"inchi_key":[
"ZAQJHHRNXZUBTE-WUJLRWPWSA-N"
],
"kegg.compound":[
"C00310"
],
"metanetx.chemical":[
"MNXM597"
],
"reactome.compound":[
"5661281"
],
"sabiork":[
"1504"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00259"
]
}
},
{
"id":"feroxE_e",
"name":"Ferrioxamine-E",
"compartment":"e",
"charge":0,
"formula":"C27H45N6O9",
"notes":{
"original_bigg_ids":[
"feroxE_e"
]
},
"annotation":{
"bigg.metabolite":[
"feroxE"
],
"chebi":[
"CHEBI:60261"
],
"hmdb":[
"HMDB41894"
],
"inchi_key":[
"MZFKJKOHYACYNT-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM97708"
],
"sbo":"SBO:0000247"
}
},
{
"id":"galt1p_c",
"name":"Galactitol 1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H13O9P",
"notes":{
"original_bigg_ids":[
"galt1p_c"
]
},
"annotation":{
"bigg.metabolite":[
"galt1p"
],
"biocyc":[
"META:GALACTITOL-1-PHOSPHATE"
],
"chebi":[
"CHEBI:24140",
"CHEBI:60083",
"CHEBI:28663",
"CHEBI:5252",
"CHEBI:14287"
],
"inchi_key":[
"GACTWZZMVMUKNG-DPYQTVNSSA-L"
],
"kegg.compound":[
"C06311"
],
"metanetx.chemical":[
"MNXM1667"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03752"
]
}
},
{
"id":"xylu__L_p",
"name":"L-Xylulose",
"compartment":"p",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"xylu_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"xylu__L"
],
"biocyc":[
"META:L-XYLULOSE"
],
"chebi":[
"CHEBI:13190",
"CHEBI:17399",
"CHEBI:6326",
"CHEBI:27353",
"CHEBI:21425"
],
"hmdb":[
"HMDB00751",
"HMDB02245"
],
"inchi_key":[
"ZAQJHHRNXZUBTE-WVZVXSGGSA-N"
],
"kegg.compound":[
"C00312"
],
"metanetx.chemical":[
"MNXM1282"
],
"reactome.compound":[
"5660036"
],
"sabiork":[
"1505",
"23128"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00261"
]
}
},
{
"id":"fruur_c",
"name":"D-Fructuronate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"fruur_c"
]
},
"annotation":{
"bigg.metabolite":[
"fruur"
],
"biocyc":[
"META:FRUCTURONATE"
],
"chebi":[
"CHEBI:47950",
"CHEBI:59881",
"CHEBI:24113",
"CHEBI:16849",
"CHEBI:12927",
"CHEBI:20936",
"CHEBI:59863",
"CHEBI:20937",
"CHEBI:4126",
"CHEBI:24112"
],
"inchi_key":[
"PTCIWUZVDIQTOW-XDJBDKDSSA-M"
],
"kegg.compound":[
"C00905"
],
"metanetx.chemical":[
"MNXM1660"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00672",
"cpd27042"
]
}
},
{
"id":"feroxEfe_e",
"name":"Ferrioxamine-E-fe",
"compartment":"e",
"charge":0,
"formula":"C27H45FeN6O9",
"notes":{
"original_bigg_ids":[
"feroxEfe_e"
]
},
"annotation":{
"bigg.metabolite":[
"feroxEfe"
],
"metanetx.chemical":[
"MNXM146392"
],
"sbo":"SBO:0000247"
}
},
{
"id":"xyl__D_p",
"name":"D-Xylose",
"compartment":"p",
"charge":0,
"formula":"C5H10O5",
"notes":{
"original_bigg_ids":[
"xyl_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"xyl__D"
],
"biocyc":[
"META:D-Xylopyranose"
],
"chebi":[
"CHEBI:65327",
"CHEBI:53455"
],
"hmdb":[
"HMDB00098",
"HMDB03763"
],
"inchi_key":[
"SRBFZHDQGSBBOR-IOVATXLUSA-N"
],
"kegg.compound":[
"C00181"
],
"kegg.drug":[
"D06346"
],
"metanetx.chemical":[
"MNXM348"
],
"reactome.compound":[
"2090063"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00154"
]
}
},
{
"id":"tagur_c",
"name":"D-Tagaturonate",
"compartment":"c",
"charge":-1,
"formula":"C6H9O7",
"notes":{
"original_bigg_ids":[
"tagur_c"
]
},
"annotation":{
"bigg.metabolite":[
"tagur"
],
"biocyc":[
"META:D-TAGATURONATE"
],
"chebi":[
"CHEBI:58493",
"CHEBI:59451",
"CHEBI:17886",
"CHEBI:4252",
"CHEBI:21098",
"CHEBI:21099",
"CHEBI:13026"
],
"inchi_key":[
"IZSRJDGCGRAUAR-WDCZJNDASA-M"
],
"kegg.compound":[
"C00558"
],
"lipidmaps":[
"LMFA05000654"
],
"metanetx.chemical":[
"MNXM1423"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00437"
]
}
},
{
"id":"zn2_p",
"name":"Zinc",
"compartment":"p",
"charge":2,
"formula":"Zn",
"notes":{
"original_bigg_ids":[
"zn2_p"
]
},
"annotation":{
"bigg.metabolite":[
"zn2"
],
"biocyc":[
"META:ZN+2"
],
"chebi":[
"CHEBI:49982",
"CHEBI:49972",
"CHEBI:29105",
"CHEBI:27368",
"CHEBI:10113"
],
"hmdb":[
"HMDB01303"
],
"inchi_key":[
"PTFCDOFLOPIGGS-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00038"
],
"metanetx.chemical":[
"MNXM149"
],
"reactome.compound":[
"216667",
"437093",
"29426",
"216785",
"435350",
"442320",
"158417"
],
"sabiork":[
"1281"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00034"
]
}
},
{
"id":"mana_c",
"name":"D-Mannonate",
"compartment":"c",
"charge":-1,
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"mana_c"
]
},
"annotation":{
"bigg.metabolite":[
"mana"
],
"biocyc":[
"META:D-MANNONATE"
],
"chebi":[
"CHEBI:21053",
"CHEBI:4206",
"CHEBI:49545",
"CHEBI:33076",
"CHEBI:17767",
"CHEBI:58654",
"CHEBI:12998",
"CHEBI:21052"
],
"inchi_key":[
"RGHNJXZEOKUKBD-MBMOQRBOSA-M"
],
"kegg.compound":[
"C00514"
],
"metanetx.chemical":[
"MNXM1045"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00403"
]
}
},
{
"id":"feroxG_e",
"name":"Ferrioxamine-G",
"compartment":"e",
"charge":0,
"formula":"C27H46N6O10",
"notes":{
"original_bigg_ids":[
"feroxG_e"
]
},
"annotation":{
"bigg.metabolite":[
"feroxG"
],
"metanetx.chemical":[
"MNXM146393"
],
"sbo":"SBO:0000247"
}
},
{
"id":"2ameph_e",
"name":"2-Aminoethylphosphonate",
"compartment":"e",
"charge":-1,
"formula":"C2H7N1O3P1",
"notes":{
"original_bigg_ids":[
"AEP_e"
]
},
"annotation":{
"bigg.metabolite":[
"2ameph"
],
"biocyc":[
"META:CPD-1106"
],
"chebi":[
"CHEBI:10849",
"CHEBI:57418",
"CHEBI:172",
"CHEBI:19469",
"CHEBI:19470",
"CHEBI:15573"
],
"hmdb":[
"HMDB11747"
],
"inchi_key":[
"QQVDJLLNRSOCEL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C03557"
],
"metanetx.chemical":[
"MNXM1692"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02233"
]
}
},
{
"id":"feroxGfe_e",
"name":"Ferrioxamine-G-fe",
"compartment":"e",
"charge":0,
"formula":"C27H46FeN6O10",
"notes":{
"original_bigg_ids":[
"feroxGfe_e"
]
},
"annotation":{
"bigg.metabolite":[
"feroxGfe"
],
"metanetx.chemical":[
"MNXM146394"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tag__D_e",
"name":"D-Tagatose",
"compartment":"e",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"tag_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"tag__D"
],
"biocyc":[
"META:TAGATOSE"
],
"chebi":[
"CHEBI:4249",
"CHEBI:21095",
"CHEBI:16443",
"CHEBI:13023",
"CHEBI:47693"
],
"hmdb":[
"HMDB03418"
],
"inchi_key":[
"BJHIKXHVCXFQLS-PQLUHFTBSA-N"
],
"kegg.compound":[
"C00795"
],
"kegg.drug":[
"D09007"
],
"metanetx.chemical":[
"MNXM92401"
],
"sabiork":[
"1513"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00589"
]
}
},
{
"id":"2ameph_p",
"name":"2-Aminoethylphosphonate",
"compartment":"p",
"charge":-1,
"formula":"C2H7N1O3P1",
"notes":{
"original_bigg_ids":[
"AEP_p"
]
},
"annotation":{
"bigg.metabolite":[
"2ameph"
],
"biocyc":[
"META:CPD-1106"
],
"chebi":[
"CHEBI:10849",
"CHEBI:57418",
"CHEBI:172",
"CHEBI:19469",
"CHEBI:19470",
"CHEBI:15573"
],
"hmdb":[
"HMDB11747"
],
"inchi_key":[
"QQVDJLLNRSOCEL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C03557"
],
"metanetx.chemical":[
"MNXM1692"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02233"
]
}
},
{
"id":"tag__D_p",
"name":"D-Tagatose",
"compartment":"p",
"charge":0,
"formula":"C6H12O6",
"notes":{
"original_bigg_ids":[
"tag_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"tag__D"
],
"biocyc":[
"META:TAGATOSE"
],
"chebi":[
"CHEBI:4249",
"CHEBI:21095",
"CHEBI:16443",
"CHEBI:13023",
"CHEBI:47693"
],
"hmdb":[
"HMDB03418"
],
"inchi_key":[
"BJHIKXHVCXFQLS-PQLUHFTBSA-N"
],
"kegg.compound":[
"C00795"
],
"kegg.drug":[
"D09007"
],
"metanetx.chemical":[
"MNXM92401"
],
"sabiork":[
"1513"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00589"
]
}
},
{
"id":"2ameph_c",
"name":"2-Aminoethylphosphonate",
"compartment":"c",
"charge":-1,
"formula":"C2H7N1O3P1",
"notes":{
"original_bigg_ids":[
"AEP_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ameph"
],
"biocyc":[
"META:CPD-1106"
],
"chebi":[
"CHEBI:10849",
"CHEBI:57418",
"CHEBI:172",
"CHEBI:19469",
"CHEBI:19470",
"CHEBI:15573"
],
"hmdb":[
"HMDB11747"
],
"inchi_key":[
"QQVDJLLNRSOCEL-UHFFFAOYSA-N"
],
"kegg.compound":[
"C03557"
],
"metanetx.chemical":[
"MNXM1692"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02233"
]
}
},
{
"id":"tag1p__D_c",
"name":"D-Tagatose-1-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C6H11O9P",
"notes":{
"original_bigg_ids":[
"tag1p_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"tag1p__D"
],
"hmdb":[
"HMDB06328"
],
"metanetx.chemical":[
"MNXM11293"
],
"sbo":"SBO:0000247"
}
},
{
"id":"feroxBfe_c",
"name":"Ferrioxamine-B-fe",
"compartment":"c",
"charge":1,
"formula":"C25H45FeN6O8",
"notes":{
"original_bigg_ids":[
"feroxBfe_c"
]
},
"annotation":{
"bigg.metabolite":[
"feroxBfe"
],
"metanetx.chemical":[
"MNXM146391"
],
"sbo":"SBO:0000247"
}
},
{
"id":"Pald_c",
"name":"Phosphonoacetaldehyde",
"compartment":"c",
"charge":-2,
"formula":"C2H3O4P1",
"notes":{
"original_bigg_ids":[
"Pald_c"
]
},
"annotation":{
"bigg.metabolite":[
"Pald"
],
"biocyc":[
"META:CPD-551"
],
"chebi":[
"CHEBI:26070",
"CHEBI:14823",
"CHEBI:18124",
"CHEBI:45088",
"CHEBI:58383",
"CHEBI:8155",
"CHEBI:11653"
],
"inchi_key":[
"YEMKIGUKNDOZEG-UHFFFAOYSA-M"
],
"kegg.compound":[
"C03167"
],
"metanetx.chemical":[
"MNXM803"
],
"sabiork":[
"2686"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02024"
]
}
},
{
"id":"feroxBfe_p",
"name":"Ferrioxamine-B-fe",
"compartment":"p",
"charge":1,
"formula":"C25H45FeN6O8",
"notes":{
"original_bigg_ids":[
"feroxBfe_p"
]
},
"annotation":{
"bigg.metabolite":[
"feroxBfe"
],
"metanetx.chemical":[
"MNXM146391"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tet_p",
"name":"Tetrathionate",
"compartment":"p",
"charge":-2,
"formula":"O6S4",
"notes":{
"original_bigg_ids":[
"tet_p"
]
},
"annotation":{
"bigg.metabolite":[
"tet"
],
"biocyc":[
"META:CPD-14"
],
"chebi":[
"CHEBI:15226",
"CHEBI:9504",
"CHEBI:16853",
"CHEBI:33113"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/266b0c99-432b-40b4-81b9-490c07bb2eac"
],
"inchi_key":[
"HPQYKCJIWQFJMS-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02084"
],
"metanetx.chemical":[
"MNXM1781"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01414"
]
}
},
{
"id":"airs_c",
"name":"Aminoimidazole-riboside",
"compartment":"c",
"charge":0,
"formula":"C8H13N3O4",
"notes":{
"original_bigg_ids":[
"airs_c"
]
},
"annotation":{
"bigg.metabolite":[
"airs"
],
"metanetx.chemical":[
"MNXM147036"
],
"sbo":"SBO:0000247"
}
},
{
"id":"feroxEfe_p",
"name":"Ferrioxamine-E-fe",
"compartment":"p",
"charge":0,
"formula":"C27H45FeN6O9",
"notes":{
"original_bigg_ids":[
"feroxEfe_p"
]
},
"annotation":{
"bigg.metabolite":[
"feroxEfe"
],
"metanetx.chemical":[
"MNXM146392"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4hoxpac_e",
"name":"4 Hydroxyphenylacetic acid C8H8O3",
"compartment":"e",
"charge":-1,
"formula":"C8H7O3",
"notes":{
"original_bigg_ids":[
"4hoxpac_e"
]
},
"annotation":{
"bigg.metabolite":[
"4hoxpac"
],
"biocyc":[
"META:4-HYDROXYPHENYLACETATE"
],
"chebi":[
"CHEBI:1874",
"CHEBI:18101",
"CHEBI:12014",
"CHEBI:20419",
"CHEBI:48999",
"CHEBI:40091"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/21154a0c-6b4f-4118-b265-5cd134f03c97",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8284218f-7e7b-4fae-aff9-d167cc692982"
],
"hmdb":[
"HMDB00020"
],
"inchi_key":[
"XQXPVVBIMDBYFF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00642"
],
"metanetx.chemical":[
"MNXM485"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00489"
]
}
},
{
"id":"feroxEfe_c",
"name":"Ferrioxamine-E-fe",
"compartment":"c",
"charge":0,
"formula":"C27H45FeN6O9",
"notes":{
"original_bigg_ids":[
"feroxEfe_c"
]
},
"annotation":{
"bigg.metabolite":[
"feroxEfe"
],
"metanetx.chemical":[
"MNXM146392"
],
"sbo":"SBO:0000247"
}
},
{
"id":"airs_e",
"name":"Aminoimidazole-riboside",
"compartment":"e",
"charge":0,
"formula":"C8H13N3O4",
"notes":{
"original_bigg_ids":[
"airs_e"
]
},
"annotation":{
"bigg.metabolite":[
"airs"
],
"metanetx.chemical":[
"MNXM147036"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4hoxpac_p",
"name":"4 Hydroxyphenylacetic acid C8H8O3",
"compartment":"p",
"charge":-1,
"formula":"C8H7O3",
"notes":{
"original_bigg_ids":[
"4hoxpac_p"
]
},
"annotation":{
"bigg.metabolite":[
"4hoxpac"
],
"biocyc":[
"META:4-HYDROXYPHENYLACETATE"
],
"chebi":[
"CHEBI:1874",
"CHEBI:18101",
"CHEBI:12014",
"CHEBI:20419",
"CHEBI:48999",
"CHEBI:40091"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/21154a0c-6b4f-4118-b265-5cd134f03c97",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8284218f-7e7b-4fae-aff9-d167cc692982"
],
"hmdb":[
"HMDB00020"
],
"inchi_key":[
"XQXPVVBIMDBYFF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00642"
],
"metanetx.chemical":[
"MNXM485"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00489"
]
}
},
{
"id":"airs_p",
"name":"Aminoimidazole-riboside",
"compartment":"p",
"charge":0,
"formula":"C8H13N3O4",
"notes":{
"original_bigg_ids":[
"airs_p"
]
},
"annotation":{
"bigg.metabolite":[
"airs"
],
"metanetx.chemical":[
"MNXM147036"
],
"sbo":"SBO:0000247"
}
},
{
"id":"feroxGfe_c",
"name":"Ferrioxamine-G-fe",
"compartment":"c",
"charge":0,
"formula":"C27H46FeN6O10",
"notes":{
"original_bigg_ids":[
"feroxGfe_c"
]
},
"annotation":{
"bigg.metabolite":[
"feroxGfe"
],
"metanetx.chemical":[
"MNXM146394"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4hoxpac_c",
"name":"4 Hydroxyphenylacetic acid C8H8O3",
"compartment":"c",
"charge":-1,
"formula":"C8H7O3",
"notes":{
"original_bigg_ids":[
"4hoxpac_c"
]
},
"annotation":{
"bigg.metabolite":[
"4hoxpac"
],
"biocyc":[
"META:4-HYDROXYPHENYLACETATE"
],
"chebi":[
"CHEBI:1874",
"CHEBI:18101",
"CHEBI:12014",
"CHEBI:20419",
"CHEBI:48999",
"CHEBI:40091"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/21154a0c-6b4f-4118-b265-5cd134f03c97",
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/8284218f-7e7b-4fae-aff9-d167cc692982"
],
"hmdb":[
"HMDB00020"
],
"inchi_key":[
"XQXPVVBIMDBYFF-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00642"
],
"metanetx.chemical":[
"MNXM485"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00489"
]
}
},
{
"id":"feroxGfe_p",
"name":"Ferrioxamine-G-fe",
"compartment":"p",
"charge":0,
"formula":"C27H46FeN6O10",
"notes":{
"original_bigg_ids":[
"feroxGfe_p"
]
},
"annotation":{
"bigg.metabolite":[
"feroxGfe"
],
"metanetx.chemical":[
"MNXM146394"
],
"sbo":"SBO:0000247"
}
},
{
"id":"3pg_p",
"name":"3-Phospho-D-glycerate",
"compartment":"p",
"charge":-3,
"formula":"C3H4O7P",
"notes":{
"original_bigg_ids":[
"3pg_p"
]
},
"annotation":{
"bigg.metabolite":[
"3pg"
],
"biocyc":[
"META:G3P"
],
"chebi":[
"CHEBI:11879",
"CHEBI:11880",
"CHEBI:17794",
"CHEBI:21029",
"CHEBI:1657",
"CHEBI:58272",
"CHEBI:12987"
],
"hmdb":[
"HMDB60180"
],
"inchi_key":[
"OSJPPGNTCRNQQC-UWTATZPHSA-K"
],
"kegg.compound":[
"C00197"
],
"metanetx.chemical":[
"MNXM126"
],
"reactome.compound":[
"6799493",
"29728"
],
"sabiork":[
"21216"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00169"
]
}
},
{
"id":"2pg_p",
"name":"D-Glycerate 2-phosphate",
"compartment":"p",
"charge":-3,
"formula":"C3H4O7P",
"notes":{
"original_bigg_ids":[
"2pg_p"
]
},
"annotation":{
"bigg.metabolite":[
"2pg"
],
"biocyc":[
"META:2-PG"
],
"chebi":[
"CHEBI:39868",
"CHEBI:21028",
"CHEBI:58289",
"CHEBI:24344",
"CHEBI:12986",
"CHEBI:17835",
"CHEBI:11651",
"CHEBI:1267",
"CHEBI:88350"
],
"hmdb":[
"HMDB00362",
"HMDB62707",
"HMDB03391"
],
"inchi_key":[
"GXIURPTVHJPJLF-UWTATZPHSA-K"
],
"kegg.compound":[
"C00631"
],
"metanetx.chemical":[
"MNXM275"
],
"reactome.compound":[
"30485"
],
"sabiork":[
"31"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00482"
]
}
},
{
"id":"34dhpacet_c",
"name":"3-4-Dihydroxyphenylacetate",
"compartment":"c",
"charge":-1,
"formula":"C8H7O4",
"notes":{
"original_bigg_ids":[
"34dhpacet_c"
]
},
"annotation":{
"bigg.metabolite":[
"34dhpacet"
],
"biocyc":[
"META:CPD-782"
],
"chebi":[
"CHEBI:19889",
"CHEBI:11697",
"CHEBI:41941",
"CHEBI:41936",
"CHEBI:11696",
"CHEBI:1386",
"CHEBI:17612"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/d7441dee-c9b3-4f65-ba05-c652a8465767",
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/723664e4-e95c-4131-a94a-976a15bf65aa"
],
"hmdb":[
"HMDB01336"
],
"inchi_key":[
"CFFZDZCDUFSOFZ-UHFFFAOYSA-M"
],
"kegg.compound":[
"C01161"
],
"metanetx.chemical":[
"MNXM645"
],
"sabiork":[
"5413"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00854"
]
}
},
{
"id":"pep_p",
"name":"Phosphoenolpyruvate",
"compartment":"p",
"charge":-3,
"formula":"C3H2O6P",
"notes":{
"original_bigg_ids":[
"pep_p"
]
},
"annotation":{
"bigg.metabolite":[
"pep"
],
"biocyc":[
"META:PHOSPHO-ENOL-PYRUVATE"
],
"chebi":[
"CHEBI:18021",
"CHEBI:44894",
"CHEBI:26054",
"CHEBI:14812",
"CHEBI:26055",
"CHEBI:8147",
"CHEBI:58702",
"CHEBI:44897"
],
"hmdb":[
"HMDB00263"
],
"inchi_key":[
"DTBNBXWJWCWCIK-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00074"
],
"metanetx.chemical":[
"MNXM73"
],
"reactome.compound":[
"372364",
"29492"
],
"sabiork":[
"32"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00061"
]
}
},
{
"id":"feroxB_c",
"name":"Ferrioxamine-B",
"compartment":"c",
"charge":1,
"formula":"C25H45N6O8",
"notes":{
"original_bigg_ids":[
"feroxB_c"
]
},
"annotation":{
"bigg.metabolite":[
"feroxB"
],
"metanetx.chemical":[
"MNXM146390"
],
"sbo":"SBO:0000247"
}
},
{
"id":"5cmhmsa_c",
"name":"2-Hydroxy-5-carboxymethylmuconate-Semialdehyde",
"compartment":"c",
"charge":-2,
"formula":"C8H6O6",
"notes":{
"original_bigg_ids":[
"2h5cmmusa_c"
]
},
"annotation":{
"bigg.metabolite":[
"5cmhmsa"
],
"biocyc":[
"META:CPD-783"
],
"chebi":[
"CHEBI:11586",
"CHEBI:17142",
"CHEBI:58030",
"CHEBI:1129",
"CHEBI:12114",
"CHEBI:27029"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/147f8256-bb14-466d-9de3-40a57ec31a20"
],
"inchi_key":[
"NLXIEJRQAIHYPN-IOBHVTPZSA-L"
],
"kegg.compound":[
"C04642"
],
"lipidmaps":[
"LMFA01030989"
],
"metanetx.chemical":[
"MNXM1628"
],
"sabiork":[
"7459"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02828"
]
}
},
{
"id":"feroxE_c",
"name":"Ferrioxamine-E",
"compartment":"c",
"charge":0,
"formula":"C27H45N6O9",
"notes":{
"original_bigg_ids":[
"feroxE_c"
]
},
"annotation":{
"bigg.metabolite":[
"feroxE"
],
"chebi":[
"CHEBI:60261"
],
"hmdb":[
"HMDB41894"
],
"inchi_key":[
"MZFKJKOHYACYNT-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM97708"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pep_e",
"name":"Phosphoenolpyruvate",
"compartment":"e",
"charge":-3,
"formula":"C3H2O6P",
"notes":{
"original_bigg_ids":[
"pep_e"
]
},
"annotation":{
"bigg.metabolite":[
"pep"
],
"biocyc":[
"META:PHOSPHO-ENOL-PYRUVATE"
],
"chebi":[
"CHEBI:18021",
"CHEBI:44894",
"CHEBI:26054",
"CHEBI:14812",
"CHEBI:26055",
"CHEBI:8147",
"CHEBI:58702",
"CHEBI:44897"
],
"hmdb":[
"HMDB00263"
],
"inchi_key":[
"DTBNBXWJWCWCIK-UHFFFAOYSA-K"
],
"kegg.compound":[
"C00074"
],
"metanetx.chemical":[
"MNXM73"
],
"reactome.compound":[
"372364",
"29492"
],
"sabiork":[
"32"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00061"
]
}
},
{
"id":"5cmhm_c",
"name":"5-Carboxymethyl-2-hydroxymuconate",
"compartment":"c",
"charge":-3,
"formula":"C8H5O7",
"notes":{
"original_bigg_ids":[
"5cm2hmu_c"
]
},
"annotation":{
"bigg.metabolite":[
"5cmhm"
],
"biocyc":[
"META:CPD-784"
],
"chebi":[
"CHEBI:47961",
"CHEBI:2040",
"CHEBI:10741",
"CHEBI:47960",
"CHEBI:20554",
"CHEBI:27028",
"CHEBI:15376"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b37a553d-e501-45b6-ae9c-fe40d3222f5f"
],
"inchi_key":[
"HJIBROWPWNLWHX-IKENXXAYSA-K"
],
"kegg.compound":[
"C04186"
],
"metanetx.chemical":[
"MNXM1163"
],
"sabiork":[
"7139"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02572"
]
}
},
{
"id":"2pg_e",
"name":"D-Glycerate 2-phosphate",
"compartment":"e",
"charge":-3,
"formula":"C3H4O7P",
"notes":{
"original_bigg_ids":[
"2pg_e"
]
},
"annotation":{
"bigg.metabolite":[
"2pg"
],
"biocyc":[
"META:2-PG"
],
"chebi":[
"CHEBI:39868",
"CHEBI:21028",
"CHEBI:58289",
"CHEBI:24344",
"CHEBI:12986",
"CHEBI:17835",
"CHEBI:11651",
"CHEBI:1267",
"CHEBI:88350"
],
"hmdb":[
"HMDB00362",
"HMDB62707",
"HMDB03391"
],
"inchi_key":[
"GXIURPTVHJPJLF-UWTATZPHSA-K"
],
"kegg.compound":[
"C00631"
],
"metanetx.chemical":[
"MNXM275"
],
"reactome.compound":[
"30485"
],
"sabiork":[
"31"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00482"
]
}
},
{
"id":"3pg_e",
"name":"3-Phospho-D-glycerate",
"compartment":"e",
"charge":-3,
"formula":"C3H4O7P",
"notes":{
"original_bigg_ids":[
"3pg_e"
]
},
"annotation":{
"bigg.metabolite":[
"3pg"
],
"biocyc":[
"META:G3P"
],
"chebi":[
"CHEBI:11879",
"CHEBI:11880",
"CHEBI:17794",
"CHEBI:21029",
"CHEBI:1657",
"CHEBI:58272",
"CHEBI:12987"
],
"hmdb":[
"HMDB60180"
],
"inchi_key":[
"OSJPPGNTCRNQQC-UWTATZPHSA-K"
],
"kegg.compound":[
"C00197"
],
"metanetx.chemical":[
"MNXM126"
],
"reactome.compound":[
"6799493",
"29728"
],
"sabiork":[
"21216"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00169"
]
}
},
{
"id":"feroxG_c",
"name":"Ferrioxamine-G",
"compartment":"c",
"charge":0,
"formula":"C27H46N6O10",
"notes":{
"original_bigg_ids":[
"feroxG_c"
]
},
"annotation":{
"bigg.metabolite":[
"feroxG"
],
"metanetx.chemical":[
"MNXM146393"
],
"sbo":"SBO:0000247"
}
},
{
"id":"5cohe_c",
"name":"5-Carboxy-2-oxohept-3-enedioate",
"compartment":"c",
"charge":-3,
"formula":"C8H5O7",
"notes":{
"original_bigg_ids":[
"5c2o3ed_c"
]
},
"annotation":{
"bigg.metabolite":[
"5cohe"
],
"chebi":[
"CHEBI:23303"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/fb7e125e-d498-4dc0-a20d-f145694cddaa"
],
"kegg.compound":[
"C04052"
],
"metanetx.chemical":[
"MNXM46951"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02507"
]
}
},
{
"id":"feroxG_p",
"name":"Ferrioxamine-G",
"compartment":"p",
"charge":0,
"formula":"C27H46N6O10",
"notes":{
"original_bigg_ids":[
"feroxG_p"
]
},
"annotation":{
"bigg.metabolite":[
"feroxG"
],
"metanetx.chemical":[
"MNXM146393"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tartr__L_c",
"name":"L-tartrate",
"compartment":"c",
"charge":-2,
"formula":"C4H4O6",
"notes":{
"original_bigg_ids":[
"tartr_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"tartr__L"
],
"biocyc":[
"META:TARTRATE"
],
"chebi":[
"CHEBI:15193",
"CHEBI:10961",
"CHEBI:30924",
"CHEBI:35397",
"CHEBI:35398",
"CHEBI:358",
"CHEBI:45866",
"CHEBI:18711",
"CHEBI:15671",
"CHEBI:26849",
"CHEBI:11018",
"CHEBI:18710"
],
"hmdb":[
"HMDB00956"
],
"inchi_key":[
"FEWJPZIEWOKRBE-JCYAYHJZSA-L"
],
"kegg.compound":[
"C00898"
],
"kegg.drug":[
"D00103"
],
"metanetx.chemical":[
"MNXM816"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00666"
]
}
},
{
"id":"2hh24dd_c",
"name":"2-Hydroxyhepta-2-4-dienedioate",
"compartment":"c",
"charge":-2,
"formula":"C7H6O5",
"notes":{
"original_bigg_ids":[
"2hh24dd_c"
]
},
"annotation":{
"bigg.metabolite":[
"2hh24dd"
],
"metanetx.chemical":[
"MNXM146251"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udpgalfur_c",
"name":"UDP-D-galacto-1,4-furanose",
"compartment":"c",
"charge":-2,
"formula":"C15H22N2O17P2",
"notes":{
"original_bigg_ids":[
"udpgalfur_c"
]
},
"annotation":{
"bigg.metabolite":[
"udpgalfur"
],
"biocyc":[
"META:UDP-D-GALACTO-14-FURANOSE"
],
"chebi":[
"CHEBI:67118",
"CHEBI:66915"
],
"inchi_key":[
"ZQLQOXLUCGXKHS-SIAUPFDVSA-L"
],
"kegg.compound":[
"C03733"
],
"metanetx.chemical":[
"MNXM2158"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02338"
]
}
},
{
"id":"feroxE_p",
"name":"Ferrioxamine-E",
"compartment":"p",
"charge":0,
"formula":"C27H45N6O9",
"notes":{
"original_bigg_ids":[
"feroxE_p"
]
},
"annotation":{
"bigg.metabolite":[
"feroxE"
],
"chebi":[
"CHEBI:60261"
],
"hmdb":[
"HMDB41894"
],
"inchi_key":[
"MZFKJKOHYACYNT-UHFFFAOYSA-N"
],
"metanetx.chemical":[
"MNXM97708"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4h2kpi_c",
"name":"4-Hydroxy-2-ketopimelate",
"compartment":"c",
"charge":-2,
"formula":"C7H8O6",
"notes":{
"original_bigg_ids":[
"4h2kpi_c"
]
},
"annotation":{
"bigg.metabolite":[
"4h2kpi"
],
"chebi":[
"CHEBI:73036"
],
"envipath":[
"4fd7f3e0-dd25-43ac-9453-dda3e52396e4/compound/bb6a1240-2a3c-4bad-82e2-bfc0a2a03f75"
],
"inchi_key":[
"HNOAJOYERZTSNK-UHFFFAOYSA-L"
],
"kegg.compound":[
"C05601"
],
"lipidmaps":[
"LMFA01170052"
],
"metanetx.chemical":[
"MNXM1623"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03327"
]
}
},
{
"id":"feroxB_p",
"name":"Ferrioxamine-B",
"compartment":"p",
"charge":1,
"formula":"C25H45N6O8",
"notes":{
"original_bigg_ids":[
"feroxB_p"
]
},
"annotation":{
"bigg.metabolite":[
"feroxB"
],
"metanetx.chemical":[
"MNXM146390"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tet_e",
"name":"Tetrathionate",
"compartment":"e",
"charge":-2,
"formula":"O6S4",
"notes":{
"original_bigg_ids":[
"tet_e"
]
},
"annotation":{
"bigg.metabolite":[
"tet"
],
"biocyc":[
"META:CPD-14"
],
"chebi":[
"CHEBI:15226",
"CHEBI:9504",
"CHEBI:16853",
"CHEBI:33113"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/266b0c99-432b-40b4-81b9-490c07bb2eac"
],
"inchi_key":[
"HPQYKCJIWQFJMS-UHFFFAOYSA-L"
],
"kegg.compound":[
"C02084"
],
"metanetx.chemical":[
"MNXM1781"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01414"
]
}
},
{
"id":"ppoh_c",
"name":"1-Propanol",
"compartment":"c",
"charge":0,
"formula":"C3H8O1",
"notes":{
"original_bigg_ids":[
"ppoh_c"
]
},
"annotation":{
"bigg.metabolite":[
"ppoh"
],
"biocyc":[
"META:PROPANOL"
],
"chebi":[
"CHEBI:26278",
"CHEBI:44960",
"CHEBI:8472",
"CHEBI:28831"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/72f1dc7c-7d6f-44ab-8eb2-898c30996527"
],
"hmdb":[
"HMDB00820"
],
"inchi_key":[
"BDERNNFJNOPAEC-UHFFFAOYSA-N"
],
"kegg.compound":[
"C05979"
],
"lipidmaps":[
"LMFA05000101"
],
"metanetx.chemical":[
"MNXM6396"
],
"sabiork":[
"2834"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03559"
]
}
},
{
"id":"frmd_e",
"name":"Formamide",
"compartment":"e",
"charge":0,
"formula":"CH3NO",
"notes":{
"original_bigg_ids":[
"foam_e"
]
},
"annotation":{
"bigg.metabolite":[
"frmd"
],
"biocyc":[
"META:FORMAMIDE"
],
"chebi":[
"CHEBI:5143",
"CHEBI:14275",
"CHEBI:48431",
"CHEBI:16397",
"CHEBI:24078",
"CHEBI:40895"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c7e7aadf-6427-4fd4-9762-54825dd75237"
],
"hmdb":[
"HMDB01536"
],
"inchi_key":[
"ZHNUHDYFZUAESO-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00488"
],
"metanetx.chemical":[
"MNXM1231"
],
"sabiork":[
"2057"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00378"
]
}
},
{
"id":"drib_e",
"name":"Deoxyribose C5H10O4",
"compartment":"e",
"charge":0,
"formula":"C5H10O4",
"notes":{
"original_bigg_ids":[
"drib_e"
]
},
"annotation":{
"bigg.metabolite":[
"drib"
],
"chebi":[
"CHEBI:90761"
],
"hmdb":[
"HMDB03224"
],
"inchi_key":[
"PDWIQYODPROSQH-PYHARJCCSA-N"
],
"kegg.compound":[
"C01801"
],
"metanetx.chemical":[
"MNXM90412"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01242"
]
}
},
{
"id":"copre2_c",
"name":"Cobalt-precorrin-2",
"compartment":"c",
"charge":-7,
"formula":"C42H39CoN4O16",
"notes":{
"original_bigg_ids":[
"codscl2_c"
]
},
"annotation":{
"bigg.metabolite":[
"copre2"
],
"biocyc":[
"META:CPD-9039"
],
"chebi":[
"CHEBI:3790",
"CHEBI:60053"
],
"inchi_key":[
"BKIWSQUNFCJSOI-HZUOBFSFSA-E"
],
"metanetx.chemical":[
"MNXM1420"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd08368"
]
}
},
{
"id":"drib_c",
"name":"Deoxyribose C5H10O4",
"compartment":"c",
"charge":0,
"formula":"C5H10O4",
"notes":{
"original_bigg_ids":[
"drib_c"
]
},
"annotation":{
"bigg.metabolite":[
"drib"
],
"chebi":[
"CHEBI:90761"
],
"hmdb":[
"HMDB03224"
],
"inchi_key":[
"PDWIQYODPROSQH-PYHARJCCSA-N"
],
"kegg.compound":[
"C01801"
],
"metanetx.chemical":[
"MNXM90412"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01242"
]
}
},
{
"id":"frmd_p",
"name":"Formamide",
"compartment":"p",
"charge":0,
"formula":"CH3NO",
"notes":{
"original_bigg_ids":[
"foam_p"
]
},
"annotation":{
"bigg.metabolite":[
"frmd"
],
"biocyc":[
"META:FORMAMIDE"
],
"chebi":[
"CHEBI:5143",
"CHEBI:14275",
"CHEBI:48431",
"CHEBI:16397",
"CHEBI:24078",
"CHEBI:40895"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c7e7aadf-6427-4fd4-9762-54825dd75237"
],
"hmdb":[
"HMDB01536"
],
"inchi_key":[
"ZHNUHDYFZUAESO-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00488"
],
"metanetx.chemical":[
"MNXM1231"
],
"sabiork":[
"2057"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00378"
]
}
},
{
"id":"frmd_c",
"name":"Formamide",
"compartment":"c",
"charge":0,
"formula":"CH3NO",
"notes":{
"original_bigg_ids":[
"foam_c"
]
},
"annotation":{
"bigg.metabolite":[
"frmd"
],
"biocyc":[
"META:FORMAMIDE"
],
"chebi":[
"CHEBI:5143",
"CHEBI:14275",
"CHEBI:48431",
"CHEBI:16397",
"CHEBI:24078",
"CHEBI:40895"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c7e7aadf-6427-4fd4-9762-54825dd75237"
],
"hmdb":[
"HMDB01536"
],
"inchi_key":[
"ZHNUHDYFZUAESO-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00488"
],
"metanetx.chemical":[
"MNXM1231"
],
"sabiork":[
"2057"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00378"
]
}
},
{
"id":"tartr__D_e",
"name":"D-tartrate",
"compartment":"e",
"charge":-2,
"formula":"C4H4O6",
"notes":{
"original_bigg_ids":[
"tartr_D_e"
]
},
"annotation":{
"bigg.metabolite":[
"tartr__D"
],
"biocyc":[
"META:D-TARTRATE"
],
"chebi":[
"CHEBI:30927",
"CHEBI:18807",
"CHEBI:35399",
"CHEBI:15672",
"CHEBI:446",
"CHEBI:18806",
"CHEBI:45873",
"CHEBI:11077"
],
"hmdb":[
"HMDB29878"
],
"inchi_key":[
"FEWJPZIEWOKRBE-LWMBPPNESA-L"
],
"kegg.compound":[
"C02107"
],
"metanetx.chemical":[
"MNXM7948"
],
"sabiork":[
"3875"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19018"
]
}
},
{
"id":"tartr__D_p",
"name":"D-tartrate",
"compartment":"p",
"charge":-2,
"formula":"C4H4O6",
"notes":{
"original_bigg_ids":[
"tartr_D_p"
]
},
"annotation":{
"bigg.metabolite":[
"tartr__D"
],
"biocyc":[
"META:D-TARTRATE"
],
"chebi":[
"CHEBI:30927",
"CHEBI:18807",
"CHEBI:35399",
"CHEBI:15672",
"CHEBI:446",
"CHEBI:18806",
"CHEBI:45873",
"CHEBI:11077"
],
"hmdb":[
"HMDB29878"
],
"inchi_key":[
"FEWJPZIEWOKRBE-LWMBPPNESA-L"
],
"kegg.compound":[
"C02107"
],
"metanetx.chemical":[
"MNXM7948"
],
"sabiork":[
"3875"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19018"
]
}
},
{
"id":"tartr__D_c",
"name":"D-tartrate",
"compartment":"c",
"charge":-2,
"formula":"C4H4O6",
"notes":{
"original_bigg_ids":[
"tartr_D_c"
]
},
"annotation":{
"bigg.metabolite":[
"tartr__D"
],
"biocyc":[
"META:D-TARTRATE"
],
"chebi":[
"CHEBI:30927",
"CHEBI:18807",
"CHEBI:35399",
"CHEBI:15672",
"CHEBI:446",
"CHEBI:18806",
"CHEBI:45873",
"CHEBI:11077"
],
"hmdb":[
"HMDB29878"
],
"inchi_key":[
"FEWJPZIEWOKRBE-LWMBPPNESA-L"
],
"kegg.compound":[
"C02107"
],
"metanetx.chemical":[
"MNXM7948"
],
"sabiork":[
"3875"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd19018"
]
}
},
{
"id":"urcan_c",
"name":"Urocanate C6H5N2O2",
"compartment":"c",
"charge":-1,
"formula":"C6H5N2O2",
"notes":{
"original_bigg_ids":[
"urocan_c"
]
},
"annotation":{
"bigg.metabolite":[
"urcan"
],
"biocyc":[
"META:UROCANATE"
],
"chebi":[
"CHEBI:46392",
"CHEBI:17771",
"CHEBI:27247",
"CHEBI:30817",
"CHEBI:27248",
"CHEBI:9899",
"CHEBI:15298"
],
"hmdb":[
"HMDB02280",
"HMDB62562",
"HMDB00301"
],
"inchi_key":[
"LOIYMIARKYCTBW-OWOJBTEDSA-M"
],
"kegg.compound":[
"C00785"
],
"metanetx.chemical":[
"MNXM700"
],
"reactome.compound":[
"30721"
],
"sabiork":[
"5236"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00581"
]
}
},
{
"id":"nflgln_c",
"name":"N-Formimino-L-glutamate",
"compartment":"c",
"charge":-1,
"formula":"C6H9N2O4",
"notes":{
"original_bigg_ids":[
"nflgln_c"
]
},
"annotation":{
"bigg.metabolite":[
"nflgln"
],
"metanetx.chemical":[
"MNXM148372"
],
"sbo":"SBO:0000247"
}
},
{
"id":"4izp_c",
"name":"4-Imidazolone-5-propanoate",
"compartment":"c",
"charge":-1,
"formula":"C6H7N2O3",
"notes":{
"original_bigg_ids":[
"4iz5pp_c"
]
},
"annotation":{
"bigg.metabolite":[
"4izp"
],
"biocyc":[
"META:4-IMIDAZOLONE-5-PROPIONATE"
],
"chebi":[
"CHEBI:11730",
"CHEBI:27384",
"CHEBI:58508",
"CHEBI:57255",
"CHEBI:77893",
"CHEBI:11041",
"CHEBI:1886",
"CHEBI:20430",
"CHEBI:20431"
],
"hmdb":[
"HMDB01014",
"HMDB62719"
],
"inchi_key":[
"MYNHYKDPSRPBNZ-UHFFFAOYSA-N"
],
"kegg.compound":[
"C03680"
],
"metanetx.chemical":[
"MNXM90394"
],
"reactome.compound":[
"34979"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02311"
]
}
},
{
"id":"4abz_e",
"name":"4-Aminobenzoate",
"compartment":"e",
"charge":-1,
"formula":"C7H6NO2",
"notes":{
"original_bigg_ids":[
"4abz_e"
]
},
"annotation":{
"bigg.metabolite":[
"4abz"
],
"biocyc":[
"META:P-AMINO-BENZOATE"
],
"chebi":[
"CHEBI:30753",
"CHEBI:20314",
"CHEBI:44778",
"CHEBI:11959",
"CHEBI:113372",
"CHEBI:20315",
"CHEBI:17836",
"CHEBI:1783"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/a5ad09dc-a75c-4ad4-8917-a62ebefdc941"
],
"hmdb":[
"HMDB01392"
],
"inchi_key":[
"ALYNCZNDIQEVRV-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00568"
],
"kegg.drug":[
"D02456"
],
"metanetx.chemical":[
"MNXM421"
],
"sabiork":[
"2099"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00443"
]
}
},
{
"id":"feroxB_e",
"name":"Ferrioxamine-B",
"compartment":"e",
"charge":1,
"formula":"C25H45N6O8",
"notes":{
"original_bigg_ids":[
"feroxB_e"
]
},
"annotation":{
"bigg.metabolite":[
"feroxB"
],
"metanetx.chemical":[
"MNXM146390"
],
"sbo":"SBO:0000247"
}
},
{
"id":"drib_p",
"name":"Deoxyribose C5H10O4",
"compartment":"p",
"charge":0,
"formula":"C5H10O4",
"notes":{
"original_bigg_ids":[
"drib_p"
]
},
"annotation":{
"bigg.metabolite":[
"drib"
],
"chebi":[
"CHEBI:90761"
],
"hmdb":[
"HMDB03224"
],
"inchi_key":[
"PDWIQYODPROSQH-PYHARJCCSA-N"
],
"kegg.compound":[
"C01801"
],
"metanetx.chemical":[
"MNXM90412"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01242"
]
}
},
{
"id":"scys__L_c",
"name":"S-Sulfo-L-cysteine",
"compartment":"c",
"charge":-1,
"formula":"C3H6NO5S2",
"notes":{
"original_bigg_ids":[
"slcys_c"
]
},
"annotation":{
"bigg.metabolite":[
"scys__L"
],
"biocyc":[
"META:SULFO-CYSTEINE"
],
"chebi":[
"CHEBI:8974",
"CHEBI:22075",
"CHEBI:62225",
"CHEBI:27891"
],
"hmdb":[
"HMDB00731"
],
"inchi_key":[
"NOKPBJYHPHHWAN-REOHCLBHSA-M"
],
"kegg.compound":[
"C05824"
],
"metanetx.chemical":[
"MNXM2428"
],
"sabiork":[
"8181"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03456"
]
}
},
{
"id":"2ohed_c",
"name":"2-Oxohept-3-ene-1,7-dioate",
"compartment":"c",
"charge":-2,
"formula":"C7H6O5",
"notes":{
"original_bigg_ids":[
"2oh3d_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ohed"
],
"biocyc":[
"META:CPD-786"
],
"chebi":[
"CHEBI:48062",
"CHEBI:19750",
"CHEBI:48061",
"CHEBI:11639",
"CHEBI:1254",
"CHEBI:17205"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/933874f0-cb17-4921-9fd9-5fd206e7a405"
],
"inchi_key":[
"HYVSZVZMTYIHKF-IWQZZHSRSA-L"
],
"kegg.compound":[
"C03063"
],
"metanetx.chemical":[
"MNXM723698"
],
"sabiork":[
"6433"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01960"
]
}
},
{
"id":"2ins_c",
"name":"2-Inosose",
"compartment":"c",
"charge":0,
"formula":"C6H10O6",
"notes":{
"original_bigg_ids":[
"2ins_c"
]
},
"annotation":{
"bigg.metabolite":[
"2ins"
],
"biocyc":[
"META:CPD-14808"
],
"chebi":[
"CHEBI:17811",
"CHEBI:900",
"CHEBI:11435",
"CHEBI:19339"
],
"inchi_key":[
"VYEGBDHSGHXOGT-HYFGLKJPSA-N"
],
"kegg.compound":[
"C00691"
],
"metanetx.chemical":[
"MNXM676"
],
"sabiork":[
"5184"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00524"
]
}
},
{
"id":"msa_c",
"name":"Malonate semialdehyde",
"compartment":"c",
"charge":-1,
"formula":"C3H3O3",
"notes":{
"original_bigg_ids":[
"msa_c"
]
},
"annotation":{
"bigg.metabolite":[
"msa"
],
"biocyc":[
"META:MALONATE-S-ALD"
],
"chebi":[
"CHEBI:33190",
"CHEBI:1651",
"CHEBI:11877",
"CHEBI:14564",
"CHEBI:17960",
"CHEBI:20180"
],
"envipath":[
"650babc9-9d68-4b73-9332-11972ca26f7b/compound/4993e172-ccf2-4c55-8e5f-b8b3ae0cc087",
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b48fbbb9-d61e-40b0-a32a-971462faf58a"
],
"hmdb":[
"HMDB11666",
"HMDB11111"
],
"inchi_key":[
"OAKURXIZZOAYBC-UHFFFAOYSA-M"
],
"kegg.compound":[
"C00222"
],
"metanetx.chemical":[
"MNXM244"
],
"reactome.compound":[
"909783"
],
"sabiork":[
"1981"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00191"
]
}
},
{
"id":"chit6p_c",
"name":"Chitobiose-6-phosphate",
"compartment":"c",
"charge":-2,
"formula":"C16H27N2O14P",
"notes":{
"original_bigg_ids":[
"chit6p_c"
]
},
"annotation":{
"bigg.metabolite":[
"chit6p"
],
"biocyc":[
"META:DIACETYLCHITOBIOSE-6-PHOSPHATE"
],
"chebi":[
"CHEBI:64897",
"CHEBI:64883"
],
"inchi_key":[
"KYKNQNQCPWDNAK-CBTAGEKQSA-L"
],
"kegg.compound":[
"C21152"
],
"metanetx.chemical":[
"MNXM11353"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd26854"
]
}
},
{
"id":"d5kgp_c",
"name":"2-Deoxy-5-keto-D-gluconic acid 6-phosphate",
"compartment":"c",
"charge":-3,
"formula":"C6H8O9P",
"notes":{
"original_bigg_ids":[
"d5kgp_c"
]
},
"annotation":{
"bigg.metabolite":[
"d5kgp"
],
"biocyc":[
"META:CPD-645"
],
"chebi":[
"CHEBI:20751",
"CHEBI:1075",
"CHEBI:19551",
"CHEBI:57949",
"CHEBI:12229",
"CHEBI:2230",
"CHEBI:27685",
"CHEBI:16925",
"CHEBI:12116"
],
"inchi_key":[
"OLUPOJQIFXQXIT-CVYQJGLWSA-K"
],
"kegg.compound":[
"C06893"
],
"metanetx.chemical":[
"MNXM1806"
],
"sbo":"SBO:0000247"
}
},
{
"id":"d5kg_c",
"name":"2-Deoxy-5-keto-D-gluconic acid",
"compartment":"c",
"charge":-1,
"formula":"C6H9O6",
"notes":{
"original_bigg_ids":[
"d5kg_c"
]
},
"annotation":{
"bigg.metabolite":[
"d5kg"
],
"biocyc":[
"META:CPD-827"
],
"chebi":[
"CHEBI:16669",
"CHEBI:1074",
"CHEBI:20560",
"CHEBI:12115",
"CHEBI:27972",
"CHEBI:2047",
"CHEBI:19550"
],
"inchi_key":[
"UCYNJPYWOSFBAT-CVYQJGLWSA-M"
],
"kegg.compound":[
"C06892"
],
"metanetx.chemical":[
"MNXM1897"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02446",
"cpd04242"
]
}
},
{
"id":"24dhhed_c",
"name":"2,4-Dihydroxyhept-2-enedioate",
"compartment":"c",
"charge":-2,
"formula":"C7H8O6",
"notes":{
"original_bigg_ids":[
"24dhhed_c"
]
},
"annotation":{
"bigg.metabolite":[
"24dhhed"
],
"biocyc":[
"META:CPD-15125"
],
"chebi":[
"CHEBI:915",
"CHEBI:58936",
"CHEBI:73089"
],
"inchi_key":[
"APNIDHDQYISZAE-HYXAFXHYSA-L"
],
"kegg.compound":[
"C06201"
],
"lipidmaps":[
"LMFA01170062"
],
"metanetx.chemical":[
"MNXM722757"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03708"
]
}
},
{
"id":"dkdi_c",
"name":"D-2,3-Diketo 4-deoxy-epi-inositol",
"compartment":"c",
"charge":0,
"formula":"C6H8O5",
"notes":{
"original_bigg_ids":[
"dkdi_c"
]
},
"annotation":{
"bigg.metabolite":[
"dkdi"
],
"biocyc":[
"META:CPD-1133"
],
"chebi":[
"CHEBI:4077",
"CHEBI:58691",
"CHEBI:28446",
"CHEBI:20887"
],
"inchi_key":[
"SHFQRUVRUBHHRE-CJPQEGFPSA-N"
],
"kegg.compound":[
"C04287",
"C06891"
],
"metanetx.chemical":[
"MNXM114119"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02631",
"cpd19055"
]
}
},
{
"id":"rnam_e",
"name":"N Ribosylnicotinamide C11H15N2O5",
"compartment":"e",
"charge":1,
"formula":"C11H15N2O5",
"notes":{
"original_bigg_ids":[
"rnam_e"
]
},
"annotation":{
"bigg.metabolite":[
"rnam"
],
"biocyc":[
"META:NICOTINAMIDE_RIBOSE"
],
"chebi":[
"CHEBI:47589",
"CHEBI:21786",
"CHEBI:7337",
"CHEBI:12527",
"CHEBI:15927"
],
"hmdb":[
"HMDB00855"
],
"inchi_key":[
"JLEBZPBDRKPWTD-TURQNECASA-O"
],
"kegg.compound":[
"C03150"
],
"metanetx.chemical":[
"MNXM1115"
],
"reactome.compound":[
"8869377",
"8940077",
"8936514"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02016"
]
}
},
{
"id":"rnam_c",
"name":"N Ribosylnicotinamide C11H15N2O5",
"compartment":"c",
"charge":1,
"formula":"C11H15N2O5",
"notes":{
"original_bigg_ids":[
"rnam_c"
]
},
"annotation":{
"bigg.metabolite":[
"rnam"
],
"biocyc":[
"META:NICOTINAMIDE_RIBOSE"
],
"chebi":[
"CHEBI:47589",
"CHEBI:21786",
"CHEBI:7337",
"CHEBI:12527",
"CHEBI:15927"
],
"hmdb":[
"HMDB00855"
],
"inchi_key":[
"JLEBZPBDRKPWTD-TURQNECASA-O"
],
"kegg.compound":[
"C03150"
],
"metanetx.chemical":[
"MNXM1115"
],
"reactome.compound":[
"8869377",
"8940077",
"8936514"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02016"
]
}
},
{
"id":"udcpo5_c",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose-acetyl",
"compartment":"c",
"charge":-2,
"formula":"C81H134O25P2",
"notes":{
"original_bigg_ids":[
"udcpo5_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpo5"
],
"metanetx.chemical":[
"MNXM146456"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29731"
]
}
},
{
"id":"udcpo4_c",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose",
"compartment":"c",
"charge":-2,
"formula":"C79H132O24P2",
"notes":{
"original_bigg_ids":[
"udcpo4_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpo4"
],
"metanetx.chemical":[
"MNXM145572"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29730"
]
}
},
{
"id":"udcpgrm_c",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose",
"compartment":"c",
"charge":-2,
"formula":"C73H122O21P2",
"notes":{
"original_bigg_ids":[
"udcpgrm_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpgrm"
],
"metanetx.chemical":[
"MNXM147332"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29729"
]
}
},
{
"id":"udcpgr_c",
"name":"Undecaprenyl diphosphate galactose-rhamnose",
"compartment":"c",
"charge":-2,
"formula":"C67H112O16P2",
"notes":{
"original_bigg_ids":[
"udcpgr_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpgr"
],
"metanetx.chemical":[
"MNXM147331"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29728"
]
}
},
{
"id":"udcpg_c",
"name":"Undecaprenyl diphosphate galactose",
"compartment":"c",
"charge":-2,
"formula":"C61H102O12P2",
"notes":{
"original_bigg_ids":[
"udcpg_c"
]
},
"annotation":{
"bigg.metabolite":[
"udcpg"
],
"metanetx.chemical":[
"MNXM723012"
],
"sbo":"SBO:0000247"
}
},
{
"id":"tcb_c",
"name":"Tricarballylate",
"compartment":"c",
"charge":-3,
"formula":"C6H5O6",
"notes":{
"original_bigg_ids":[
"tcb_c"
]
},
"annotation":{
"bigg.metabolite":[
"tcb"
],
"biocyc":[
"META:CPD-3571"
],
"chebi":[
"CHEBI:62517",
"CHEBI:45969"
],
"hmdb":[
"HMDB31193"
],
"inchi_key":[
"KQTIIICEAUMSDG-UHFFFAOYSA-K"
],
"kegg.compound":[
"C19806"
],
"metanetx.chemical":[
"MNXM4854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16654"
]
}
},
{
"id":"chitob_p",
"name":"Chitobiose C16H28N2O11",
"compartment":"p",
"charge":0,
"formula":"C16H28N2O11",
"notes":{
"original_bigg_ids":[
"chitob_p"
]
},
"annotation":{
"bigg.metabolite":[
"chitob"
],
"biocyc":[
"META:CHITOBIOSE"
],
"chebi":[
"CHEBI:701011",
"CHEBI:3597",
"CHEBI:28681"
],
"hmdb":[
"HMDB62702"
],
"inchi_key":[
"CDOJPCSDOXYJJF-CBTAGEKQSA-N"
],
"kegg.compound":[
"C01674"
],
"kegg.glycan":[
"G10336"
],
"metanetx.chemical":[
"MNXM1680"
],
"sabiork":[
"5722"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01157"
]
}
},
{
"id":"rnam_p",
"name":"N Ribosylnicotinamide C11H15N2O5",
"compartment":"p",
"charge":1,
"formula":"C11H15N2O5",
"notes":{
"original_bigg_ids":[
"rnam_p"
]
},
"annotation":{
"bigg.metabolite":[
"rnam"
],
"biocyc":[
"META:NICOTINAMIDE_RIBOSE"
],
"chebi":[
"CHEBI:47589",
"CHEBI:21786",
"CHEBI:7337",
"CHEBI:12527",
"CHEBI:15927"
],
"hmdb":[
"HMDB00855"
],
"inchi_key":[
"JLEBZPBDRKPWTD-TURQNECASA-O"
],
"kegg.compound":[
"C03150"
],
"metanetx.chemical":[
"MNXM1115"
],
"reactome.compound":[
"8869377",
"8940077",
"8936514"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd02016"
]
}
},
{
"id":"udcpo5_p",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose-acetyl",
"compartment":"p",
"charge":-2,
"formula":"C81H134O25P2",
"notes":{
"original_bigg_ids":[
"udcpo5_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcpo5"
],
"metanetx.chemical":[
"MNXM146456"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29731"
]
}
},
{
"id":"udcpo5_e",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose-acetyl",
"compartment":"e",
"charge":-2,
"formula":"C81H134O25P2",
"notes":{
"original_bigg_ids":[
"udcpo5_e"
]
},
"annotation":{
"bigg.metabolite":[
"udcpo5"
],
"metanetx.chemical":[
"MNXM146456"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29731"
]
}
},
{
"id":"tcb_p",
"name":"Tricarballylate",
"compartment":"p",
"charge":-3,
"formula":"C6H5O6",
"notes":{
"original_bigg_ids":[
"tcb_p"
]
},
"annotation":{
"bigg.metabolite":[
"tcb"
],
"biocyc":[
"META:CPD-3571"
],
"chebi":[
"CHEBI:62517",
"CHEBI:45969"
],
"hmdb":[
"HMDB31193"
],
"inchi_key":[
"KQTIIICEAUMSDG-UHFFFAOYSA-K"
],
"kegg.compound":[
"C19806"
],
"metanetx.chemical":[
"MNXM4854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16654"
]
}
},
{
"id":"tcb_e",
"name":"Tricarballylate",
"compartment":"e",
"charge":-3,
"formula":"C6H5O6",
"notes":{
"original_bigg_ids":[
"tcb_e"
]
},
"annotation":{
"bigg.metabolite":[
"tcb"
],
"biocyc":[
"META:CPD-3571"
],
"chebi":[
"CHEBI:62517",
"CHEBI:45969"
],
"hmdb":[
"HMDB31193"
],
"inchi_key":[
"KQTIIICEAUMSDG-UHFFFAOYSA-K"
],
"kegg.compound":[
"C19806"
],
"metanetx.chemical":[
"MNXM4854"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd16654"
]
}
},
{
"id":"tton_p",
"name":"Trithionate",
"compartment":"p",
"charge":-2,
"formula":"H2O6S3",
"notes":{
"original_bigg_ids":[
"tton_p"
]
},
"annotation":{
"bigg.metabolite":[
"tton"
],
"biocyc":[
"META:CPD-552"
],
"chebi":[
"CHEBI:15267",
"CHEBI:15987",
"CHEBI:11095",
"CHEBI:27152",
"CHEBI:9749",
"CHEBI:33483",
"CHEBI:29210"
],
"inchi_key":[
"KRURGYOKPVLRHQ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01861"
],
"metanetx.chemical":[
"MNXM1871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01281"
]
}
},
{
"id":"tton_e",
"name":"Trithionate",
"compartment":"e",
"charge":-2,
"formula":"H2O6S3",
"notes":{
"original_bigg_ids":[
"tton_e"
]
},
"annotation":{
"bigg.metabolite":[
"tton"
],
"biocyc":[
"META:CPD-552"
],
"chebi":[
"CHEBI:15267",
"CHEBI:15987",
"CHEBI:11095",
"CHEBI:27152",
"CHEBI:9749",
"CHEBI:33483",
"CHEBI:29210"
],
"inchi_key":[
"KRURGYOKPVLRHQ-UHFFFAOYSA-L"
],
"kegg.compound":[
"C01861"
],
"metanetx.chemical":[
"MNXM1871"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd01281"
]
}
},
{
"id":"psd5p_c",
"name":"Pseudouridine 5  phosphate C9H11N2O9P",
"compartment":"c",
"charge":-2,
"formula":"C9H13N2O9P",
"notes":{
"original_bigg_ids":[
"psd5p_c"
]
},
"annotation":{
"bigg.metabolite":[
"psd5p"
],
"metanetx.chemical":[
"MNXM148492"
],
"sbo":"SBO:0000247"
}
},
{
"id":"peptido_ST_p",
"name":"Membrane murein mixture",
"compartment":"p",
"notes":{
"original_bigg_ids":[
"peptido_ST_p"
]
},
"annotation":{
"bigg.metabolite":[
"peptido_ST"
],
"metanetx.chemical":[
"MNXM147510"
],
"sbo":"SBO:0000247"
}
},
{
"id":"clpn2_ST_p",
"name":"Membrane cardiolipin mixture",
"compartment":"p",
"notes":{
"original_bigg_ids":[
"clpn2_ST_p"
]
},
"annotation":{
"bigg.metabolite":[
"clpn2_ST"
],
"metanetx.chemical":[
"MNXM147509"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pg2_ST_p",
"name":"Membrane phosphatidylglycerol mixture",
"compartment":"p",
"notes":{
"original_bigg_ids":[
"pg2_ST_p"
]
},
"annotation":{
"bigg.metabolite":[
"pg2_ST"
],
"metanetx.chemical":[
"MNXM147513"
],
"sbo":"SBO:0000247"
}
},
{
"id":"12dgr2_ST_p",
"name":"Membrane 1,2-diacylglycerol mixture",
"compartment":"p",
"notes":{
"original_bigg_ids":[
"12dgr2_ST_p"
]
},
"annotation":{
"bigg.metabolite":[
"12dgr2_ST"
],
"metanetx.chemical":[
"MNXM147508"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pe2_ST_p",
"name":"Membrane phosphatidylethanolamine mixture",
"compartment":"p",
"notes":{
"original_bigg_ids":[
"pe2_ST_p"
]
},
"annotation":{
"bigg.metabolite":[
"pe2_ST"
],
"metanetx.chemical":[
"MNXM147512"
],
"sbo":"SBO:0000247"
}
},
{
"id":"ps2_ST_p",
"name":"Membrane phosphatidylserine mixture",
"compartment":"p",
"notes":{
"original_bigg_ids":[
"ps2_ST_p"
]
},
"annotation":{
"bigg.metabolite":[
"ps2_ST"
],
"metanetx.chemical":[
"MNXM147514"
],
"sbo":"SBO:0000247"
}
},
{
"id":"colipaOA_e",
"name":"Membrane LPS mixture",
"compartment":"e",
"notes":{
"original_bigg_ids":[
"colipaOA_e"
]
},
"annotation":{
"bigg.metabolite":[
"colipaOA"
],
"metanetx.chemical":[
"MNXM147150"
],
"sbo":"SBO:0000247"
}
},
{
"id":"pa2_ST_p",
"name":"Membrane phosphatidate mixture",
"compartment":"p",
"notes":{
"original_bigg_ids":[
"pa2_ST_p"
]
},
"annotation":{
"bigg.metabolite":[
"pa2_ST"
],
"metanetx.chemical":[
"MNXM147511"
],
"sbo":"SBO:0000247"
}
},
{
"id":"OA_ST_p",
"name":"OA ST[p]",
"compartment":"p",
"notes":{
"original_bigg_ids":[
"OA_ST_p"
]
},
"annotation":{
"bigg.metabolite":[
"OA_ST"
],
"metanetx.chemical":[
"MNXM146598"
],
"sbo":"SBO:0000247"
}
},
{
"id":"udcpo4_p",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose",
"compartment":"p",
"charge":-2,
"formula":"C79H132O24P2",
"notes":{
"original_bigg_ids":[
"udcpo4_p"
]
},
"annotation":{
"bigg.metabolite":[
"udcpo4"
],
"metanetx.chemical":[
"MNXM145572"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29730"
]
}
},
{
"id":"udcpo4_e",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose",
"compartment":"e",
"charge":-2,
"formula":"C79H132O24P2",
"notes":{
"original_bigg_ids":[
"udcpo4_e"
]
},
"annotation":{
"bigg.metabolite":[
"udcpo4"
],
"metanetx.chemical":[
"MNXM145572"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd29730"
]
}
},
{
"id":"pydx_p",
"name":"Pyridoxal",
"compartment":"p",
"charge":0,
"formula":"C8H9NO3",
"notes":{
"original_bigg_ids":[
"pydx_p"
]
},
"annotation":{
"bigg.metabolite":[
"pydx"
],
"biocyc":[
"META:PYRIDOXAL"
],
"chebi":[
"CHEBI:45112",
"CHEBI:131530",
"CHEBI:14976",
"CHEBI:26423",
"CHEBI:17310",
"CHEBI:8667"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/049709c3-768e-468f-b435-40e990942002"
],
"hmdb":[
"HMDB01545"
],
"inchi_key":[
"RADKZDMFGJYCBB-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00250"
],
"metanetx.chemical":[
"MNXM311"
],
"reactome.compound":[
"965131"
],
"sabiork":[
"1991"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00215"
]
}
},
{
"id":"pydxn_p",
"name":"Pyridoxine",
"compartment":"p",
"charge":0,
"formula":"C8H11NO3",
"notes":{
"original_bigg_ids":[
"pydxn_p"
]
},
"annotation":{
"bigg.metabolite":[
"pydxn"
],
"biocyc":[
"META:PYRIDOXINE"
],
"chebi":[
"CHEBI:14981",
"CHEBI:26429",
"CHEBI:16709",
"CHEBI:8671"
],
"envipath":[
"32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/344a84bd-2fbd-4e3b-903e-556786d111e2"
],
"hmdb":[
"HMDB02075",
"HMDB00239"
],
"inchi_key":[
"LXNHXLLTXMVWPM-UHFFFAOYSA-N"
],
"kegg.compound":[
"C00314"
],
"kegg.drug":[
"D08454"
],
"metanetx.chemical":[
"MNXM419"
],
"reactome.compound":[
"965053"
],
"sabiork":[
"2015"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00263"
]
}
},
{
"id":"4hthr_p",
"name":"4-Hydroxy-L-threonine",
"compartment":"p",
"charge":0,
"formula":"C4H9NO4",
"notes":{
"original_bigg_ids":[
"4hthr_p"
]
},
"annotation":{
"bigg.metabolite":[
"4hthr"
],
"biocyc":[
"META:CPD0-2189"
],
"chebi":[
"CHEBI:60904",
"CHEBI:28330",
"CHEBI:20393",
"CHEBI:1853"
],
"inchi_key":[
"JBNUARFQOCGDRK-GBXIJSLDSA-N"
],
"kegg.compound":[
"C06056"
],
"metanetx.chemical":[
"MNXM1802"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03608"
]
}
},
{
"id":"4hthr_e",
"name":"4-Hydroxy-L-threonine",
"compartment":"e",
"charge":0,
"formula":"C4H9NO4",
"notes":{
"original_bigg_ids":[
"4hthr_e"
]
},
"annotation":{
"bigg.metabolite":[
"4hthr"
],
"biocyc":[
"META:CPD0-2189"
],
"chebi":[
"CHEBI:60904",
"CHEBI:28330",
"CHEBI:20393",
"CHEBI:1853"
],
"inchi_key":[
"JBNUARFQOCGDRK-GBXIJSLDSA-N"
],
"kegg.compound":[
"C06056"
],
"metanetx.chemical":[
"MNXM1802"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03608"
]
}
},
{
"id":"23dhbzs3_p",
"name":"2-3-dihydroxybenzoylserine trimer",
"compartment":"p",
"formula":"C30H29N3O16",
"notes":{
"original_bigg_ids":[
"23dhbzs3_p"
]
},
"annotation":{
"bigg.metabolite":[
"23dhbzs3"
],
"metanetx.chemical":[
"MNXM145882"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs2_p",
"name":"Salmochelin-S2",
"compartment":"p",
"formula":"C42H49N3O26",
"notes":{
"original_bigg_ids":[
"salchs2_p"
]
},
"annotation":{
"bigg.metabolite":[
"salchs2"
],
"metanetx.chemical":[
"MNXM146229"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs2fe_p",
"name":"Salmochelin-S2-Fe-III",
"compartment":"p",
"formula":"C42FeH49N3O26",
"notes":{
"original_bigg_ids":[
"salchs2fe_p"
]
},
"annotation":{
"bigg.metabolite":[
"salchs2fe"
],
"metanetx.chemical":[
"MNXM146230"
],
"sbo":"SBO:0000247"
}
},
{
"id":"23dhbzs3_e",
"name":"2-3-dihydroxybenzoylserine trimer",
"compartment":"e",
"formula":"C30H29N3O16",
"notes":{
"original_bigg_ids":[
"23dhbzs3_e"
]
},
"annotation":{
"bigg.metabolite":[
"23dhbzs3"
],
"metanetx.chemical":[
"MNXM145882"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fe3dhbzs3_e",
"name":"2-3-dihydroxybenzoylserine trimer-Fe-III",
"compartment":"e",
"formula":"C30FeH29N3O16",
"notes":{
"original_bigg_ids":[
"fe3dhbzs3_e"
]
},
"annotation":{
"bigg.metabolite":[
"fe3dhbzs3"
],
"metanetx.chemical":[
"MNXM146250"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fe3dhbzs3_p",
"name":"2-3-dihydroxybenzoylserine trimer-Fe-III",
"compartment":"p",
"formula":"C30FeH29N3O16",
"notes":{
"original_bigg_ids":[
"fe3dhbzs3_p"
]
},
"annotation":{
"bigg.metabolite":[
"fe3dhbzs3"
],
"metanetx.chemical":[
"MNXM146250"
],
"sbo":"SBO:0000247"
}
},
{
"id":"fe3dhbzs3_c",
"name":"2-3-dihydroxybenzoylserine trimer-Fe-III",
"compartment":"c",
"formula":"C30FeH29N3O16",
"notes":{
"original_bigg_ids":[
"fe3dhbzs3_c"
]
},
"annotation":{
"bigg.metabolite":[
"fe3dhbzs3"
],
"metanetx.chemical":[
"MNXM146250"
],
"sbo":"SBO:0000247"
}
},
{
"id":"23dhbzs3_c",
"name":"2-3-dihydroxybenzoylserine trimer",
"compartment":"c",
"formula":"C30H29N3O16",
"notes":{
"original_bigg_ids":[
"23dhbzs3_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhbzs3"
],
"metanetx.chemical":[
"MNXM145882"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs2_e",
"name":"Salmochelin-S2",
"compartment":"e",
"formula":"C42H49N3O26",
"notes":{
"original_bigg_ids":[
"salchs2_e"
]
},
"annotation":{
"bigg.metabolite":[
"salchs2"
],
"metanetx.chemical":[
"MNXM146229"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs2fe_e",
"name":"Salmochelin-S2-Fe-III",
"compartment":"e",
"formula":"C42FeH49N3O26",
"notes":{
"original_bigg_ids":[
"salchs2fe_e"
]
},
"annotation":{
"bigg.metabolite":[
"salchs2fe"
],
"metanetx.chemical":[
"MNXM146230"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs2fe_c",
"name":"Salmochelin-S2-Fe-III",
"compartment":"c",
"formula":"C42FeH49N3O26",
"notes":{
"original_bigg_ids":[
"salchs2fe_c"
]
},
"annotation":{
"bigg.metabolite":[
"salchs2fe"
],
"metanetx.chemical":[
"MNXM146230"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs2_c",
"name":"Salmochelin-S2",
"compartment":"c",
"formula":"C42H49N3O26",
"notes":{
"original_bigg_ids":[
"salchs2_c"
]
},
"annotation":{
"bigg.metabolite":[
"salchs2"
],
"metanetx.chemical":[
"MNXM146229"
],
"sbo":"SBO:0000247"
}
},
{
"id":"salchs1_c",
"name":"Salmochelin-S1",
"compartment":"c",
"formula":"C26H30N2O16",
"notes":{
"original_bigg_ids":[
"salchs1_c"
]
},
"annotation":{
"bigg.metabolite":[
"salchs1"
],
"metanetx.chemical":[
"MNXM148507"
],
"sbo":"SBO:0000247"
}
},
{
"id":"23dhbzs2_c",
"name":"2-3-dihydroxybenzoylserine dimer",
"compartment":"c",
"formula":"C20H20N2O11",
"notes":{
"original_bigg_ids":[
"23dhbzs2_c"
]
},
"annotation":{
"bigg.metabolite":[
"23dhbzs2"
],
"metanetx.chemical":[
"MNXM147716"
],
"sbo":"SBO:0000247"
}
},
{
"id":"entermg_c",
"name":"Enterobactin monoglycosylated",
"compartment":"c",
"formula":"C36H37N3O20",
"notes":{
"original_bigg_ids":[
"entermg_c"
]
},
"annotation":{
"bigg.metabolite":[
"entermg"
],
"metanetx.chemical":[
"MNXM148234"
],
"sbo":"SBO:0000247"
}
},
{
"id":"guln__L_p",
"name":"L-gulonate",
"compartment":"p",
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"guln_L_p"
]
},
"annotation":{
"bigg.metabolite":[
"guln__L"
],
"biocyc":[
"META:L-GULONATE"
],
"chebi":[
"CHEBI:13115",
"CHEBI:24462",
"CHEBI:21318",
"CHEBI:6235",
"CHEBI:16154",
"CHEBI:24461",
"CHEBI:21319"
],
"inchi_key":[
"RGHNJXZEOKUKBD-QTBDOELSSA-M"
],
"kegg.compound":[
"C00800"
],
"metanetx.chemical":[
"MNXM1927"
],
"reactome.compound":[
"5661268"
],
"sabiork":[
"2159",
"26258"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00594"
]
}
},
{
"id":"guln__L_e",
"name":"L-gulonate",
"compartment":"e",
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"guln_L_e"
]
},
"annotation":{
"bigg.metabolite":[
"guln__L"
],
"biocyc":[
"META:L-GULONATE"
],
"chebi":[
"CHEBI:13115",
"CHEBI:24462",
"CHEBI:21318",
"CHEBI:6235",
"CHEBI:16154",
"CHEBI:24461",
"CHEBI:21319"
],
"inchi_key":[
"RGHNJXZEOKUKBD-QTBDOELSSA-M"
],
"kegg.compound":[
"C00800"
],
"metanetx.chemical":[
"MNXM1927"
],
"reactome.compound":[
"5661268"
],
"sabiork":[
"2159",
"26258"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00594"
]
}
},
{
"id":"guln__L_c",
"name":"L-gulonate",
"compartment":"c",
"formula":"C6H11O7",
"notes":{
"original_bigg_ids":[
"guln_L_c"
]
},
"annotation":{
"bigg.metabolite":[
"guln__L"
],
"biocyc":[
"META:L-GULONATE"
],
"chebi":[
"CHEBI:13115",
"CHEBI:24462",
"CHEBI:21318",
"CHEBI:6235",
"CHEBI:16154",
"CHEBI:24461",
"CHEBI:21319"
],
"inchi_key":[
"RGHNJXZEOKUKBD-QTBDOELSSA-M"
],
"kegg.compound":[
"C00800"
],
"metanetx.chemical":[
"MNXM1927"
],
"reactome.compound":[
"5661268"
],
"sabiork":[
"2159",
"26258"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd00594"
]
}
},
{
"id":"dxyl_p",
"name":"1-deoxy-D-xylulose",
"compartment":"p",
"charge":0,
"formula":"C5H10O4",
"notes":{
"original_bigg_ids":[
"dxyl_p"
]
},
"annotation":{
"bigg.metabolite":[
"dxyl"
],
"biocyc":[
"META:CPD-1093"
],
"chebi":[
"CHEBI:19038",
"CHEBI:621",
"CHEBI:28354"
],
"hmdb":[
"HMDB01292"
],
"inchi_key":[
"IGUZJYCAXLYZEE-RFZPGFLSSA-N"
],
"kegg.compound":[
"C06257"
],
"metanetx.chemical":[
"MNXM2454"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03738"
]
}
},
{
"id":"dxyl_e",
"name":"1-deoxy-D-xylulose",
"compartment":"e",
"charge":0,
"formula":"C5H10O4",
"notes":{
"original_bigg_ids":[
"dxyl_e"
]
},
"annotation":{
"bigg.metabolite":[
"dxyl"
],
"biocyc":[
"META:CPD-1093"
],
"chebi":[
"CHEBI:19038",
"CHEBI:621",
"CHEBI:28354"
],
"hmdb":[
"HMDB01292"
],
"inchi_key":[
"IGUZJYCAXLYZEE-RFZPGFLSSA-N"
],
"kegg.compound":[
"C06257"
],
"metanetx.chemical":[
"MNXM2454"
],
"sbo":"SBO:0000247",
"seed.compound":[
"cpd03738"
]
}
},
{
"id":"murein_lpp_p",
"name":"Braun lipoprotein conjugated with murein",
"compartment":"p",
"formula":"C385H645N102O139S2",
"notes":{
"original_bigg_ids":[
"murein_lpp_p"
]
},
"annotation":{
"bigg.metabolite":[
"murein_lpp"
],
"metanetx.chemical":[
"MNXM148977"
],
"sbo":"SBO:0000247"
}
},
{
"id":"apolpp_p",
"name":"Braun apolipoprotein",
"compartment":"p",
"formula":"C292H498N87O98S2",
"notes":{
"original_bigg_ids":[
"apolpp_p"
]
},
"annotation":{
"bigg.metabolite":[
"apolpp"
],
"metanetx.chemical":[
"MNXM147441"
],
"sbo":"SBO:0000247"
}
},
{
"id":"lpp_sp_p",
"name":"Braun lipoprotein signal peptide",
"compartment":"p",
"formula":"C90H165N25O25S",
"notes":{
"original_bigg_ids":[
"lpp_sp_p"
]
},
"annotation":{
"bigg.metabolite":[
"lpp_sp"
],
"metanetx.chemical":[
"MNXM148978"
],
"sbo":"SBO:0000247"
}
},
{
"id":"diglyceride_prolpp_c",
"name":"Diglyceride Braun prolipoprotein",
"compartment":"c",
"formula":"C382H661N112O122S3",
"notes":{
"original_bigg_ids":[
"diglyceride_prolpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"diglyceride_prolpp"
],
"metanetx.chemical":[
"MNXM147466"
],
"sbo":"SBO:0000247"
}
},
{
"id":"glyceryl_prolpp_c",
"name":"Glyceryl Braun prolipoprotein",
"compartment":"c",
"formula":"C366H631N112O121S3",
"notes":{
"original_bigg_ids":[
"glyceryl_prolpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"glyceryl_prolpp"
],
"metanetx.chemical":[
"MNXM147477"
],
"sbo":"SBO:0000247"
}
},
{
"id":"prolpp_c",
"name":"Braun prolipoprotein",
"compartment":"c",
"formula":"C350H601N112O120S3",
"notes":{
"original_bigg_ids":[
"prolpp_c"
]
},
"annotation":{
"bigg.metabolite":[
"prolpp"
],
"metanetx.chemical":[
"MNXM148979"
],
"sbo":"SBO:0000247"
}
}
],
"reactions":[
{
"id":"3HAD180",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:0)",
"metabolites":{
"3hoctaACP_c":-1.0,
"h2o_c":1.0,
"toctd2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD180"
]
},
"annotation":{
"bigg.reaction":[
"3HAD180"
],
"ec-code":[
"4.2.1.61",
"4.2.1.-",
"2.3.1.-"
],
"kegg.reaction":[
"R07764"
],
"metanetx.reaction":[
"MNXR94883"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07979"
]
}
},
{
"id":"3HAD181",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C18:1)",
"metabolites":{
"3hcvac11eACP_c":-1.0,
"h2o_c":1.0,
"t3c11vaceACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0227 or STM1067",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD181"
]
},
"annotation":{
"bigg.reaction":[
"3HAD181"
],
"ec-code":[
"4.2.1.61"
],
"metanetx.reaction":[
"MNXR94884"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07980"
]
}
},
{
"id":"3HAD40",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C4:0)",
"metabolites":{
"3haACP_c":-1.0,
"but2eACP_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD40"
]
},
"annotation":{
"bigg.reaction":[
"3HAD40"
],
"ec-code":[
"4.2.1.58"
],
"metanetx.reaction":[
"MNXR94885"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07981"
]
}
},
{
"id":"3HAD60",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C6:0)",
"metabolites":{
"3hhexACP_c":-1.0,
"h2o_c":1.0,
"thex2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD60"
]
},
"annotation":{
"bigg.reaction":[
"3HAD60"
],
"ec-code":[
"2.3.1.85",
"4.2.1.58",
"2.3.1.86",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04954"
],
"metanetx.reaction":[
"MNXR94887"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05330"
]
}
},
{
"id":"3HAD80",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C8:0)",
"metabolites":{
"3hoctACP_c":-1.0,
"h2o_c":1.0,
"toct2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD80"
]
},
"annotation":{
"bigg.reaction":[
"3HAD80"
],
"biocyc":[
"META:4.2.1.59-RXN"
],
"ec-code":[
"2.3.1.85",
"4.2.1.58",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04537"
],
"metanetx.reaction":[
"MNXR94888"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05334"
]
}
},
{
"id":"3KGK",
"name":"3-keto-L-gulonate kinase",
"metabolites":{
"3dhguln_c":-1.0,
"3dhgulnp_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3674",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"3KGK"
]
},
"annotation":{
"bigg.reaction":[
"3KGK"
],
"biocyc":[
"META:RXN0-704"
],
"ec-code":[
"2.7.1.53"
],
"kegg.reaction":[
"R07127"
],
"metanetx.reaction":[
"MNXR94909"
],
"rhea":[
"28222",
"28223",
"28225",
"28224"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04930"
]
}
},
{
"id":"3NTD2pp",
"name":"3'-nucleotidase (UMP) (periplasm)",
"metabolites":{
"3ump_p":-1.0,
"h2o_p":-1.0,
"pi_p":1.0,
"uri_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4403",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"3NTD2pp"
]
},
"annotation":{
"bigg.reaction":[
"3NTD2pp"
],
"biocyc":[
"META:RXN-14115"
],
"ec-code":[
"3.1.3.6"
],
"kegg.reaction":[
"R01877"
],
"metanetx.reaction":[
"MNXR94932"
],
"rhea":[
"27891",
"27890",
"27892",
"27893"
],
"sabiork":[
"487"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01367"
]
}
},
{
"id":"3NTD4pp",
"name":"3'-nucleotidase (CMP) (periplasm)",
"metabolites":{
"3cmp_p":-1.0,
"cytd_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4403 or STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"3NTD4pp"
]
},
"annotation":{
"bigg.reaction":[
"3NTD4pp"
],
"biocyc":[
"META:RXN-14090"
],
"ec-code":[
"3.1.3.6"
],
"kegg.reaction":[
"R02370"
],
"metanetx.reaction":[
"MNXR94934"
],
"rhea":[
"27895",
"27897",
"27896",
"27894"
],
"sabiork":[
"508"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01704"
]
}
},
{
"id":"3NTD7pp",
"name":"3'-nucleotidase (AMP) (periplasm)",
"metabolites":{
"3amp_p":-1.0,
"adn_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4403 or STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"3NTD7pp"
]
},
"annotation":{
"bigg.reaction":[
"3NTD7pp"
],
"biocyc":[
"META:RXN-14126"
],
"ec-code":[
"3.1.3.6"
],
"kegg.reaction":[
"R01562"
],
"metanetx.reaction":[
"MNXR94935"
],
"rhea":[
"27901",
"27899",
"27898",
"27900"
],
"sabiork":[
"305"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01139"
]
}
},
{
"id":"3NTD9pp",
"name":"3'-nucleotidase (GMP) (periplasm)",
"metabolites":{
"3gmp_p":-1.0,
"gsn_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4403",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"3NTD9pp"
]
},
"annotation":{
"bigg.reaction":[
"3NTD9pp"
],
"biocyc":[
"META:RXN-14124"
],
"ec-code":[
"3.1.3.6"
],
"kegg.reaction":[
"R02148"
],
"metanetx.reaction":[
"MNXR94936"
],
"rhea":[
"27864",
"27865",
"27862",
"27863"
],
"sabiork":[
"309"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01549"
]
}
},
{
"id":"3OAR100",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C10:0)",
"metabolites":{
"3hdecACP_c":1.0,
"3odecACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR100"
]
},
"annotation":{
"bigg.reaction":[
"3OAR100"
],
"biocyc":[
"META:RXN-9528"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04534"
],
"metanetx.reaction":[
"MNXR94941"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05338"
]
}
},
{
"id":"3OAR120",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:0)",
"metabolites":{
"3hddecACP_c":1.0,
"3oddecACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR120"
]
},
"annotation":{
"bigg.reaction":[
"3OAR120"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04964"
],
"metanetx.reaction":[
"MNXR94942"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05340"
]
}
},
{
"id":"3OAR121",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C12:1)",
"metabolites":{
"3hcddec5eACP_c":1.0,
"3ocddec5eACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR121"
]
},
"annotation":{
"bigg.reaction":[
"3OAR121"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94943"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07987"
]
}
},
{
"id":"3OAR140",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:0)",
"metabolites":{
"3hmrsACP_c":1.0,
"3omrsACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR140"
]
},
"annotation":{
"bigg.reaction":[
"3OAR140"
],
"biocyc":[
"META:RXN-9536"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04566"
],
"metanetx.reaction":[
"MNXR94944"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05342"
]
}
},
{
"id":"3OAR141",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C14:1)",
"metabolites":{
"3hcmrs7eACP_c":1.0,
"3ocmrs7eACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR141"
]
},
"annotation":{
"bigg.reaction":[
"3OAR141"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94945"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07989"
]
}
},
{
"id":"3OAR160",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:0)",
"metabolites":{
"3hpalmACP_c":1.0,
"3opalmACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR160"
]
},
"annotation":{
"bigg.reaction":[
"3OAR160"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04543"
],
"metanetx.reaction":[
"MNXR94946"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05336"
]
}
},
{
"id":"3OAR161",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C16:1)",
"metabolites":{
"3hcpalm9eACP_c":1.0,
"3ocpalm9eACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR161"
]
},
"annotation":{
"bigg.reaction":[
"3OAR161"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94947"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07991"
]
}
},
{
"id":"23CAMPtex",
"name":"23cAMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"23camp_e":-1.0,
"23camp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"23CAMPtex"
]
},
"annotation":{
"bigg.reaction":[
"23CAMPtex"
],
"metanetx.reaction":[
"MNXR94718"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07925"
]
}
},
{
"id":"23CCMPtex",
"name":"23cCMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"23ccmp_e":-1.0,
"23ccmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"23CCMPtex"
]
},
"annotation":{
"bigg.reaction":[
"23CCMPtex"
],
"metanetx.reaction":[
"MNXR94720"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07926"
]
}
},
{
"id":"23CGMPtex",
"name":"23cGMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"23cgmp_e":-1.0,
"23cgmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"23CGMPtex"
]
},
"annotation":{
"bigg.reaction":[
"23CGMPtex"
],
"metanetx.reaction":[
"MNXR94721"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07927"
]
}
},
{
"id":"12DGR120tipp",
"name":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C12:0)",
"metabolites":{
"12dgr120_c":1.0,
"12dgr120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12DGR120tipp"
]
},
"annotation":{
"bigg.reaction":[
"12DGR120tipp"
],
"metanetx.reaction":[
"MNXR94675"
],
"sbo":"SBO:0000185"
}
},
{
"id":"12DGR140tipp",
"name":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:0)",
"metabolites":{
"12dgr140_c":1.0,
"12dgr140_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12DGR140tipp"
]
},
"annotation":{
"bigg.reaction":[
"12DGR140tipp"
],
"metanetx.reaction":[
"MNXR94676"
],
"sbo":"SBO:0000185"
}
},
{
"id":"12DGR141tipp",
"name":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C14:1)",
"metabolites":{
"12dgr141_c":1.0,
"12dgr141_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12DGR141tipp"
]
},
"annotation":{
"bigg.reaction":[
"12DGR141tipp"
],
"metanetx.reaction":[
"MNXR94677"
],
"sbo":"SBO:0000185"
}
},
{
"id":"12DGR160tipp",
"name":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:0)",
"metabolites":{
"12dgr160_c":1.0,
"12dgr160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12DGR160tipp"
]
},
"annotation":{
"bigg.reaction":[
"12DGR160tipp"
],
"metanetx.reaction":[
"MNXR94678"
],
"sbo":"SBO:0000185"
}
},
{
"id":"23CUMPtex",
"name":"23cUMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"23cump_e":-1.0,
"23cump_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"23CUMPtex"
]
},
"annotation":{
"bigg.reaction":[
"23CUMPtex"
],
"metanetx.reaction":[
"MNXR94726"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07928"
]
}
},
{
"id":"3OAR180",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:0)",
"metabolites":{
"3hoctaACP_c":1.0,
"3ooctdACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR180"
]
},
"annotation":{
"bigg.reaction":[
"3OAR180"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94948"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07992"
]
}
},
{
"id":"23DAPPAt2pp",
"name":"2,3-diaminopropionate transport in via proton symport",
"metabolites":{
"23dappa_c":1.0,
"23dappa_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"23DAPPAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"23DAPPAt2pp"
],
"metanetx.reaction":[
"MNXR94727"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07929"
]
}
},
{
"id":"23DAPPAtex",
"name":"2,3-diaminopropionate transport via diffusion",
"metabolites":{
"23dappa_e":-1.0,
"23dappa_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"23DAPPAtex"
]
},
"annotation":{
"bigg.reaction":[
"23DAPPAtex"
],
"metanetx.reaction":[
"MNXR94728"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07930"
]
}
},
{
"id":"12DGR161tipp",
"name":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C16:1)",
"metabolites":{
"12dgr161_c":1.0,
"12dgr161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12DGR161tipp"
]
},
"annotation":{
"bigg.reaction":[
"12DGR161tipp"
],
"metanetx.reaction":[
"MNXR94679"
],
"sbo":"SBO:0000185"
}
},
{
"id":"12DGR180tipp",
"name":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:0)",
"metabolites":{
"12dgr180_c":1.0,
"12dgr180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12DGR180tipp"
]
},
"annotation":{
"bigg.reaction":[
"12DGR180tipp"
],
"metanetx.reaction":[
"MNXR94680"
],
"sbo":"SBO:0000185"
}
},
{
"id":"12DGR181tipp",
"name":"1,2 diacylglycerol transport via flipping (periplasm to cytoplasm, n-C18:1)",
"metabolites":{
"12dgr181_c":1.0,
"12dgr181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12DGR181tipp"
]
},
"annotation":{
"bigg.reaction":[
"12DGR181tipp"
],
"metanetx.reaction":[
"MNXR94681"
],
"sbo":"SBO:0000185"
}
},
{
"id":"12PPDRtex",
"name":"(R)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"12ppd__R_e":-1.0,
"12ppd__R_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"12PPDRtex"
]
},
"annotation":{
"bigg.reaction":[
"12PPDRtex"
],
"biocyc":[
"META:TRANS-RXN0-467"
],
"metanetx.reaction":[
"MNXR94683"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07920",
"rxn07919"
]
}
},
{
"id":"12PPDRtpp",
"name":"(R)-Propane-1,2-diol facilitated transport (periplasm)",
"metabolites":{
"12ppd__R_c":1.0,
"12ppd__R_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2037",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12PPDRtpp"
]
},
"annotation":{
"bigg.reaction":[
"12PPDRtpp"
],
"biocyc":[
"META:TRANS-RXN0-467"
],
"metanetx.reaction":[
"MNXR94683"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07920",
"rxn07919"
]
}
},
{
"id":"12PPDStex",
"name":"(S)-Propane-1,2-diol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"12ppd__S_e":-1.0,
"12ppd__S_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"12PPDStex"
]
},
"annotation":{
"bigg.reaction":[
"12PPDStex"
],
"metanetx.reaction":[
"MNXR94684"
],
"sbo":"SBO:0000185"
}
},
{
"id":"12PPDStpp",
"name":"(S)-Propane-1,2-diol facilitated transport (periplasm)",
"metabolites":{
"12ppd__S_c":1.0,
"12ppd__S_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2037",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"12PPDS2tpp",
"12PPDStpp"
]
},
"annotation":{
"bigg.reaction":[
"12PPDStpp"
],
"metanetx.reaction":[
"MNXR94684"
],
"sbo":"SBO:0000185"
}
},
{
"id":"23PDE2pp",
"name":"2',3'-cyclic-nucleotide phosphodiesterase (UMP) (periplasm)",
"metabolites":{
"23cump_p":-1.0,
"3ump_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4403",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"23PDE2pp"
]
},
"annotation":{
"bigg.reaction":[
"23PDE2pp"
],
"biocyc":[
"META:RXN-14091"
],
"ec-code":[
"3.1.4.16"
],
"kegg.reaction":[
"R03538"
],
"metanetx.reaction":[
"MNXR94723"
],
"rhea":[
"27879",
"27881",
"27878",
"27880"
],
"sabiork":[
"516"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02522"
]
}
},
{
"id":"23PDE4pp",
"name":"2',3'-cyclic-nucleotide phosphodiesterase (CMP) (periplasm)",
"metabolites":{
"23ccmp_p":-1.0,
"3cmp_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4403",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"23PDE4pp"
]
},
"annotation":{
"bigg.reaction":[
"23PDE4pp"
],
"biocyc":[
"META:RXN-14112"
],
"ec-code":[
"3.1.4.16"
],
"kegg.reaction":[
"R03929"
],
"metanetx.reaction":[
"MNXR94724"
],
"rhea":[
"27882",
"27884",
"27883",
"27885"
],
"sabiork":[
"518"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02762"
]
}
},
{
"id":"23PDE7pp",
"name":"2',3'-cyclic-nucleotide phosphodiesterase (AMP) (periplasm)",
"metabolites":{
"23camp_p":-1.0,
"3amp_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4403",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"23PDE7pp"
]
},
"annotation":{
"bigg.reaction":[
"23PDE7pp"
],
"biocyc":[
"META:RXN-14113"
],
"ec-code":[
"3.1.4.16"
],
"kegg.reaction":[
"R03537"
],
"metanetx.reaction":[
"MNXR94722"
],
"rhea":[
"27886",
"27887",
"27889",
"27888"
],
"sabiork":[
"3322"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02521"
]
}
},
{
"id":"23PDE9pp",
"name":"2',3'-cyclic-nucleotide phosphodiesterase (GMP) (periplasm)",
"metabolites":{
"23cgmp_p":-1.0,
"3gmp_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4403",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"23PDE9pp"
]
},
"annotation":{
"bigg.reaction":[
"23PDE9pp"
],
"biocyc":[
"META:RXN-14064"
],
"ec-code":[
"3.1.4.16"
],
"kegg.reaction":[
"R05135"
],
"metanetx.reaction":[
"MNXR94725"
],
"rhea":[
"27858",
"27860",
"27861",
"27859"
],
"sabiork":[
"4755"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03483"
]
}
},
{
"id":"26DAHtex",
"name":"Meso-2,6-Diaminoheptanedioate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"26dap__M_e":-1.0,
"26dap__M_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"26DAHtex"
]
},
"annotation":{
"bigg.reaction":[
"26DAHtex"
],
"metanetx.reaction":[
"MNXR94741"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07931"
]
}
},
{
"id":"2AGPA120tipp",
"name":"2-Acyl-sn-glycero-3-phosphatidate (n-C12:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2ddecg3p_c":1.0,
"2ddecg3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPA120tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPA120tipp"
],
"metanetx.reaction":[
"MNXR94743"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07932"
]
}
},
{
"id":"2AGPA140tipp",
"name":"2-Acyl-sn-glycero-3-phosphatidate (n-C14:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2tdecg3p_c":1.0,
"2tdecg3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPA140tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPA140tipp"
],
"metanetx.reaction":[
"MNXR94744"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07933"
]
}
},
{
"id":"2AGPA141tipp",
"name":"2-Acyl-sn-glycero-3-phosphatidate (n-C14:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2tdec7eg3p_c":1.0,
"2tdec7eg3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPA141tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPA141tipp"
],
"metanetx.reaction":[
"MNXR94745"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07934"
]
}
},
{
"id":"2AGPA160tipp",
"name":"2-Acyl-sn-glycero-3-phosphatidate (n-C16:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2hdecg3p_c":1.0,
"2hdecg3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPA160tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPA160tipp"
],
"metanetx.reaction":[
"MNXR94746"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07935"
]
}
},
{
"id":"2AGPA161tipp",
"name":"2-Acyl-sn-glycero-3-phosphatidate (n-C16:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2hdec9eg3p_c":1.0,
"2hdec9eg3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPA161tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPA161tipp"
],
"metanetx.reaction":[
"MNXR94747"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07936"
]
}
},
{
"id":"2AGPA180tipp",
"name":"2-Acyl-sn-glycero-3-phosphatidate (n-C18:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2odecg3p_c":1.0,
"2odecg3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPA180tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPA180tipp"
],
"metanetx.reaction":[
"MNXR94748"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07937"
]
}
},
{
"id":"2AGPA181tipp",
"name":"2-Acyl-sn-glycero-3-phosphatidate (n-C18:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2odec11eg3p_c":1.0,
"2odec11eg3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPA181tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPA181tipp"
],
"metanetx.reaction":[
"MNXR94749"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07938"
]
}
},
{
"id":"14GLUCANabcpp",
"name":"1,4-alpha-D-glucan transport via ABC system (periplasm)",
"metabolites":{
"14glucan_c":1.0,
"14glucan_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4229 and STM4228 and STM4227 and STM4230",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"14GLUCANabcpp"
]
},
"annotation":{
"bigg.reaction":[
"14GLUCANabcpp"
],
"metanetx.reaction":[
"MNXR94693"
],
"sbo":"SBO:0000185"
}
},
{
"id":"14GLUCANtexi",
"name":"1,4-alpha-D-glucan transport via diffusion (extracellular to periplasm) irreversible",
"metabolites":{
"14glucan_e":-1.0,
"14glucan_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4231",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"14GLUCANtexi"
]
},
"annotation":{
"bigg.reaction":[
"14GLUCANtexi"
],
"ec-code":[
"2.4.1.161"
],
"metanetx.reaction":[
"MNXR94694"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPE120tipp",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C12:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpe120_c":1.0,
"2agpe120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPE120tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPE120tipp"
],
"metanetx.reaction":[
"MNXR94750"
],
"sbo":"SBO:0000185"
}
},
{
"id":"3OAR181",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C18:1)",
"metabolites":{
"3hcvac11eACP_c":1.0,
"3ocvac11eACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR181"
]
},
"annotation":{
"bigg.reaction":[
"3OAR181"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94949"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07993"
]
}
},
{
"id":"2AGPE140tipp",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpe140_c":1.0,
"2agpe140_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPE140tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPE140tipp"
],
"metanetx.reaction":[
"MNXR94751"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPE141tipp",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C14:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpe141_c":1.0,
"2agpe141_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPE141tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPE141tipp"
],
"metanetx.reaction":[
"MNXR94752"
],
"sbo":"SBO:0000185"
}
},
{
"id":"3OAR40",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C4:0)",
"metabolites":{
"3haACP_c":1.0,
"actACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR40"
]
},
"annotation":{
"bigg.reaction":[
"3OAR40"
],
"ec-code":[
"1.1.1.100"
],
"metanetx.reaction":[
"MNXR94950"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07994"
]
}
},
{
"id":"2AGPE160tipp",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpe160_c":1.0,
"2agpe160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPE160tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPE160tipp"
],
"metanetx.reaction":[
"MNXR94753"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07942"
]
}
},
{
"id":"3OAR60",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0)",
"metabolites":{
"3hhexACP_c":1.0,
"3ohexACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR60"
]
},
"annotation":{
"bigg.reaction":[
"3OAR60"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04953"
],
"metanetx.reaction":[
"MNXR94952"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05337"
]
}
},
{
"id":"2AGPE161tipp",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C16:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpe161_c":1.0,
"2agpe161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPE161tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPE161tipp"
],
"metanetx.reaction":[
"MNXR94754"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPE180tipp",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpe180_c":1.0,
"2agpe180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPE180tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPE180tipp"
],
"metanetx.reaction":[
"MNXR94755"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07944"
]
}
},
{
"id":"2AGPE181tipp",
"name":"2-Acyl-sn-glycero-3-phosphoethanolamine (n-C18:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpe181_c":1.0,
"2agpe181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPE181tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPE181tipp"
],
"metanetx.reaction":[
"MNXR94756"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPEAT120",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C12:0)",
"metabolites":{
"2agpe120_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ddca_c":-1.0,
"pe120_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPEAT120"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT120"
],
"metanetx.reaction":[
"MNXR94757"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ABUTtex",
"name":"4-aminobutyrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"4abut_e":-1.0,
"4abut_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ABUTtex"
]
},
"annotation":{
"bigg.reaction":[
"ABUTtex"
],
"metanetx.reaction":[
"MNXR94993"
],
"reactome.reaction":[
"R-XTR-888592",
"R-DRE-888592",
"R-OSA-888592",
"R-GGA-888592",
"R-SSC-888592",
"R-DME-888592",
"R-CFA-888592",
"R-BTA-888592",
"R-RNO-888592",
"R-SCE-888592",
"R-TGU-888592",
"R-ATH-888592",
"R-MMU-888592",
"R-HSA-888592",
"R-CEL-888592"
],
"rhea":[
"35035",
"35036",
"35037",
"35038"
],
"sabiork":[
"13098"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08028",
"rxn11326",
"rxn09795"
]
}
},
{
"id":"ACACtex",
"name":"Acetoacetate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acac_e":-1.0,
"acac_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACACtex"
]
},
"annotation":{
"bigg.reaction":[
"ACACtex"
],
"biocyc":[
"META:TRANS-RXN0-281"
],
"metanetx.reaction":[
"MNXR95208"
],
"rhea":[
"29753",
"29752",
"29754",
"29751"
],
"sabiork":[
"12476"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08030",
"rxn10960",
"rxn13115"
]
}
},
{
"id":"ACALD",
"name":"Acetaldehyde dehydrogenase (acetylating)",
"metabolites":{
"acald_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1749 or STM2463",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"ACALD"
]
},
"annotation":{
"bigg.reaction":[
"ACALD"
],
"biocyc":[
"META:ACETALD-DEHYDROG-RXN"
],
"ec-code":[
"1.2.1.10"
],
"kegg.reaction":[
"R00228"
],
"metanetx.reaction":[
"MNXR95210"
],
"rhea":[
"23290",
"23291",
"23289",
"23288"
],
"sabiork":[
"163"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00171"
]
}
},
{
"id":"ACALDtex",
"name":"Acetaldehyde transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acald_e":-1.0,
"acald_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACALDtex"
]
},
"annotation":{
"bigg.reaction":[
"ACALDtex"
],
"metanetx.reaction":[
"MNXR95212"
],
"reactome.reaction":[
"R-HSA-449872"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09700",
"rxn08033",
"rxn13212",
"rxn08032"
]
}
},
{
"id":"ACALDtpp",
"name":"Acetaldehyde reversible transport (periplasm)",
"metabolites":{
"acald_c":1.0,
"acald_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACALDtpp"
]
},
"annotation":{
"bigg.reaction":[
"ACALDtpp"
],
"metanetx.reaction":[
"MNXR95212"
],
"reactome.reaction":[
"R-HSA-449872"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09700",
"rxn08033",
"rxn13212",
"rxn08032"
]
}
},
{
"id":"2AGPEAT140",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:0)",
"metabolites":{
"2agpe140_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"pe140_c":1.0,
"ppi_c":1.0,
"ttdca_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPEAT140"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT140"
],
"metanetx.reaction":[
"MNXR94758"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAR80",
"name":"3-oxoacyl-[acyl-carrier-protein] reductase (n-C8:0)",
"metabolites":{
"3hoctACP_c":1.0,
"3ooctACP_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1195",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAR80"
]
},
"annotation":{
"bigg.reaction":[
"3OAR80"
],
"biocyc":[
"META:RXN-9524"
],
"ec-code":[
"2.3.1.86",
"2.3.1.-",
"2.3.1.85",
"1.1.1.100"
],
"kegg.reaction":[
"R04536"
],
"metanetx.reaction":[
"MNXR94953"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05341"
]
}
},
{
"id":"2AGPEAT141",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C14:1)",
"metabolites":{
"2agpe141_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"pe141_c":1.0,
"ppi_c":1.0,
"ttdcea_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPEAT141"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT141"
],
"metanetx.reaction":[
"MNXR94759"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPEAT160",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:0)",
"metabolites":{
"2agpe160_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdca_c":-1.0,
"pe160_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPEAT160"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT160"
],
"ec-code":[
"2.3.1.40"
],
"metanetx.reaction":[
"MNXR94760"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07949"
]
}
},
{
"id":"ACBIPGT",
"name":"Adenosyl cobinamide phosphate guanyltransferase",
"metabolites":{
"adocbip_c":-1.0,
"agdpcbi_c":1.0,
"gtp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2018",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACBIPGT"
]
},
"annotation":{
"bigg.reaction":[
"ACBIPGT"
],
"biocyc":[
"META:COBINPGUANYLYLTRANS-RXN"
],
"ec-code":[
"2.7.7.62"
],
"kegg.reaction":[
"R05222"
],
"metanetx.reaction":[
"MNXR95216"
],
"rhea":[
"22712",
"22715",
"22713",
"22714"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03537"
]
}
},
{
"id":"ACCOAC",
"name":"Acetyl-CoA carboxylase",
"metabolites":{
"accoa_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"hco3_c":-1.0,
"malcoa_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0232 and STM2366 and STM3379 and STM3380",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACCOAC"
]
},
"annotation":{
"bigg.reaction":[
"ACCOAC"
],
"biocyc":[
"META:ACETYL-COA-CARBOXYLTRANSFER-RXN"
],
"ec-code":[
"6.4.1.2"
],
"kegg.reaction":[
"R00742"
],
"metanetx.reaction":[
"MNXR95219"
],
"reactome.reaction":[
"R-PFA-200555",
"R-SPO-75851",
"R-DRE-8876889",
"R-CFA-200555",
"R-DME-75851",
"R-HSA-75851",
"R-HSA-8876889",
"R-BTA-200555",
"R-BTA-8876889",
"R-DRE-75851",
"R-XTR-200555",
"R-SSC-8876889",
"R-CFA-8876889",
"R-MMU-200555",
"R-DRE-200555",
"R-MMU-8876889",
"R-RNO-200555",
"R-SPO-8876889",
"R-RNO-75851",
"R-PFA-75851",
"R-CEL-8876889",
"R-SCE-200555",
"R-TGU-8876889",
"R-GGA-200555",
"R-GGA-8876889",
"R-SCE-8876889",
"R-ATH-75851",
"R-SPO-200555",
"R-SSC-200555",
"R-DME-8876889",
"R-DDI-200555",
"R-ATH-200555",
"R-RNO-8876889",
"R-DME-200555",
"R-XTR-8876889",
"R-MMU-75851",
"R-DDI-8876889",
"R-CFA-75851",
"R-DDI-75851",
"R-PFA-8876889",
"R-CEL-200555",
"R-CEL-75851",
"R-HSA-200555",
"R-TGU-75851",
"R-BTA-75851",
"R-TGU-200555",
"R-ATH-8876889",
"R-SCE-75851",
"R-SSC-75851",
"R-GGA-75851",
"R-XTR-75851"
],
"rhea":[
"11308",
"11311",
"11310",
"11309"
],
"sabiork":[
"542"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00533"
]
}
},
{
"id":"2AGPEAT161",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C16:1)",
"metabolites":{
"2agpe161_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdcea_c":-1.0,
"pe161_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPEAT161"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT161"
],
"metanetx.reaction":[
"MNXR94761"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACCOAL",
"name":"Acetate-CoA ligase (ADP-forming)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"pi_c":1.0,
"ppa_c":-1.0,
"ppcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0371 or STM4275",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ACCOAL"
]
},
"annotation":{
"bigg.reaction":[
"ACCOAL"
],
"ec-code":[
"6.2.1.13"
],
"metanetx.reaction":[
"MNXR95221"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAS100",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C10:0)",
"metabolites":{
"3odecACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"ocACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378 or STM1197",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS100"
]
},
"annotation":{
"bigg.reaction":[
"3OAS100"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94954"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACGAL1PPpp",
"name":"N-acetyl-D-galactosamine 1-phosphatase (periplasm)",
"metabolites":{
"acgal1p_p":-1.0,
"acgal_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ACGAL1PPpp"
]
},
"annotation":{
"bigg.reaction":[
"ACGAL1PPpp"
],
"ec-code":[
"3.1.3.10"
],
"metanetx.reaction":[
"MNXR95233"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08035"
]
}
},
{
"id":"2AGPEAT180",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:0)",
"metabolites":{
"2agpe180_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdca_c":-1.0,
"pe180_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPEAT180"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT180"
],
"ec-code":[
"2.3.1.40"
],
"metanetx.reaction":[
"MNXR94762"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07951"
]
}
},
{
"id":"2AGPEAT181",
"name":"2-acyl-glycerophospho-ethanolamine acyltransferase (n-C18:1)",
"metabolites":{
"2agpe181_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdcea_c":-1.0,
"pe181_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPEAT181"
]
},
"annotation":{
"bigg.reaction":[
"2AGPEAT181"
],
"metanetx.reaction":[
"MNXR94763"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPG120tipp",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C12:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpg120_c":1.0,
"2agpg120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPG120tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPG120tipp"
],
"metanetx.reaction":[
"MNXR94764"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ACGAL1Ptex",
"name":"N-acetyl-D-galactosamine 1-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acgal1p_e":-1.0,
"acgal1p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACGAL1Ptex"
]
},
"annotation":{
"bigg.reaction":[
"ACGAL1Ptex"
],
"metanetx.reaction":[
"MNXR95234"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08036"
]
}
},
{
"id":"3OAS120",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:0)",
"metabolites":{
"3oddecACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"dcaACP_c":-1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378 or STM1197",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS120"
]
},
"annotation":{
"bigg.reaction":[
"3OAS120"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94955"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACGALtex",
"name":"N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acgal_e":-1.0,
"acgal_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACGALtex"
]
},
"annotation":{
"bigg.reaction":[
"ACGALtex"
],
"metanetx.reaction":[
"MNXR95244"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08037"
]
}
},
{
"id":"ACGAM1PPpp",
"name":"N-acetyl-D-glucosamine 1-phosphatase (periplasm)",
"metabolites":{
"acgam1p_p":-1.0,
"acgam_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ACGAM1PPpp"
]
},
"annotation":{
"bigg.reaction":[
"ACGAM1PPpp"
],
"ec-code":[
"3.1.3.10"
],
"metanetx.reaction":[
"MNXR95245"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08038"
]
}
},
{
"id":"2AGPG140tipp",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpg140_c":1.0,
"2agpg140_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPG140tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPG140tipp"
],
"metanetx.reaction":[
"MNXR94765"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPG141tipp",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C14:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpg141_c":1.0,
"2agpg141_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPG141tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPG141tipp"
],
"metanetx.reaction":[
"MNXR94766"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPG160tipp",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpg160_c":1.0,
"2agpg160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPG160tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPG160tipp"
],
"metanetx.reaction":[
"MNXR94767"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ACGAM1Ptex",
"name":"N-acetyl-D-glucosamine 1-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acgam1p_e":-1.0,
"acgam1p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACGAM1Ptex"
]
},
"annotation":{
"bigg.reaction":[
"ACGAM1Ptex"
],
"metanetx.reaction":[
"MNXR95246"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08039"
]
}
},
{
"id":"ACGAMK",
"name":"N-acetylglucosamine kinase",
"metabolites":{
"acgam6p_c":1.0,
"acgam_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1220",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"ACGAMK"
]
},
"annotation":{
"bigg.reaction":[
"ACGAMK"
],
"biocyc":[
"META:N-ACETYLGLUCOSAMINE-KINASE-RXN"
],
"ec-code":[
"2.7.1.59"
],
"kegg.reaction":[
"R01201"
],
"metanetx.reaction":[
"MNXR95249"
],
"rhea":[
"17420",
"17418",
"17419",
"17417"
],
"sabiork":[
"1435"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00892"
]
}
},
{
"id":"ACGAMT",
"name":"UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase",
"metabolites":{
"uacgam_c":-1.0,
"udcpp_c":-1.0,
"ump_c":1.0,
"unaga_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3918",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACGAMT"
]
},
"annotation":{
"bigg.reaction":[
"ACGAMT"
],
"metanetx.reaction":[
"MNXR95251"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08040"
]
}
},
{
"id":"2AGPG161tipp",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C16:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpg161_c":1.0,
"2agpg161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPG161tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPG161tipp"
],
"metanetx.reaction":[
"MNXR94768"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPG180tipp",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:0) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpg180_c":1.0,
"2agpg180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPG180tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPG180tipp"
],
"metanetx.reaction":[
"MNXR94769"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2AGPG181tipp",
"name":"2-Acyl-sn-glycero-3-phosphoglycerol (n-C18:1) transporter via facilitated diffusion (periplasm)",
"metabolites":{
"2agpg181_c":1.0,
"2agpg181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3009",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2AGPG181tipp"
]
},
"annotation":{
"bigg.reaction":[
"2AGPG181tipp"
],
"metanetx.reaction":[
"MNXR94770"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ACGAptspp",
"name":"N-Acetyl-D-glucosamine transport via PEP:Pyr PTS  (periplasm)",
"metabolites":{
"acgam6p_c":1.0,
"acgam_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2433 and STM1203 and STM2431 and STM2432) or (STM0685 and STM2431 and STM2432)",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACGAptspp"
]
},
"annotation":{
"bigg.reaction":[
"ACGAptspp"
],
"metanetx.reaction":[
"MNXR95253"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08041",
"rxn05485"
]
}
},
{
"id":"ACGAtex",
"name":"N-Acetyl-D-glucosamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acgam_e":-1.0,
"acgam_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACGAtex"
]
},
"annotation":{
"bigg.reaction":[
"ACGAtex"
],
"metanetx.reaction":[
"MNXR95252"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08042"
]
}
},
{
"id":"2AGPGAT120",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C12:0)",
"metabolites":{
"2agpg120_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ddca_c":-1.0,
"pg120_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPGAT120"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT120"
],
"metanetx.reaction":[
"MNXR94771"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACGK",
"name":"Acetylglutamate kinase",
"metabolites":{
"acg5p_c":1.0,
"acglu_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4122",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ACGK"
]
},
"annotation":{
"bigg.reaction":[
"ACGK"
],
"biocyc":[
"META:ACETYLGLUTKIN-RXN"
],
"ec-code":[
"2.7.2.8"
],
"kegg.reaction":[
"R02649"
],
"metanetx.reaction":[
"MNXR95256"
],
"rhea":[
"14632",
"14631",
"14630",
"14629"
],
"sabiork":[
"2545"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01917"
]
}
},
{
"id":"2AGPGAT140",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C14:0)",
"metabolites":{
"2agpg140_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"pg140_c":1.0,
"ppi_c":1.0,
"ttdca_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPGAT140"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT140"
],
"metanetx.reaction":[
"MNXR94772"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAS121",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C12:1)",
"metabolites":{
"3ocddec5eACP_c":1.0,
"ACP_c":1.0,
"cdec3eACP_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS121"
]
},
"annotation":{
"bigg.reaction":[
"3OAS121"
],
"ec-code":[
"2.3.1.41"
],
"metanetx.reaction":[
"MNXR94956"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPGAT141",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C14:1)",
"metabolites":{
"2agpg141_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"pg141_c":1.0,
"ppi_c":1.0,
"ttdcea_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPGAT141"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT141"
],
"metanetx.reaction":[
"MNXR94773"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPGAT160",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C16:0)",
"metabolites":{
"2agpg160_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdca_c":-1.0,
"pg160_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPGAT160"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT160"
],
"metanetx.reaction":[
"MNXR94774"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACGS",
"name":"N-acetylglutamate synthase",
"metabolites":{
"accoa_c":-1.0,
"acglu_c":1.0,
"coa_c":1.0,
"glu__L_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2992",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ACGS"
]
},
"annotation":{
"bigg.reaction":[
"ACGS"
],
"biocyc":[
"META:N-ACETYLTRANSFER-RXN"
],
"ec-code":[
"2.3.1.1"
],
"kegg.reaction":[
"R00259"
],
"metanetx.reaction":[
"MNXR95259"
],
"reactome.reaction":[
"R-HSA-70542",
"R-SPO-70542",
"R-XTR-70542",
"R-SSC-70542",
"R-DRE-70542",
"R-DDI-70542",
"R-MMU-70542",
"R-SCE-70542",
"R-BTA-70542",
"R-CFA-70542",
"R-RNO-70542"
],
"rhea":[
"24295",
"24292",
"24293",
"24294"
],
"sabiork":[
"764"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00192"
]
}
},
{
"id":"ACHBS",
"name":"2-aceto-2-hydroxybutanoate synthase",
"metabolites":{
"2ahbut_c":1.0,
"2obut_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM3795 and STM3796) or (STM3901 and STM3902)",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"ACHBS"
]
},
"annotation":{
"bigg.reaction":[
"ACHBS"
],
"biocyc":[
"META:ACETOOHBUTSYN-RXN"
],
"ec-code":[
"2.2.1.6"
],
"kegg.reaction":[
"R08648"
],
"metanetx.reaction":[
"MNXR95260"
],
"rhea":[
"27657",
"27655",
"27654",
"27656"
],
"sabiork":[
"6688"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3OAS140",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0)",
"metabolites":{
"3omrsACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"ddcaACP_c":-1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378 or STM1197",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS140"
]
},
"annotation":{
"bigg.reaction":[
"3OAS140"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94957"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACKr",
"name":"Acetate kinase",
"metabolites":{
"ac_c":-1.0,
"actp_c":1.0,
"adp_c":1.0,
"atp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3242 or STM2337 or STM1883",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"ACKr"
]
},
"annotation":{
"bigg.reaction":[
"ACKr"
],
"biocyc":[
"META:ACETATEKIN-RXN"
],
"ec-code":[
"2.7.2.15",
"2.7.2.1"
],
"kegg.reaction":[
"R00315"
],
"metanetx.reaction":[
"MNXR95269"
],
"rhea":[
"11354",
"11355",
"11353",
"11352"
],
"sabiork":[
"71"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00225"
]
}
},
{
"id":"ACLS",
"name":"Acetolactate synthase",
"metabolites":{
"alac__S_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"pyr_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM3795 and STM3796) or (STM3901 and STM3902)",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"ACLS"
]
},
"annotation":{
"bigg.reaction":[
"ACLS"
],
"biocyc":[
"META:ACETOLACTSYN-RXN"
],
"ec-code":[
"2.2.1.6"
],
"kegg.reaction":[
"R00226"
],
"metanetx.reaction":[
"MNXR95271"
],
"rhea":[
"25252",
"25251",
"25249",
"25250"
],
"sabiork":[
"749"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPGAT161",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C16:1)",
"metabolites":{
"2agpg161_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdcea_c":-1.0,
"pg161_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPGAT161"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT161"
],
"metanetx.reaction":[
"MNXR94775"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPGAT180",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C18:0)",
"metabolites":{
"2agpg180_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdca_c":-1.0,
"pg180_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPGAT180"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT180"
],
"metanetx.reaction":[
"MNXR94776"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2AGPGAT181",
"name":"2-acyl-glycerophospho-glycerol acyltransferase (n-C18:1)",
"metabolites":{
"2agpg181_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdcea_c":-1.0,
"pg181_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"2AGPGAT181"
]
},
"annotation":{
"bigg.reaction":[
"2AGPGAT181"
],
"metanetx.reaction":[
"MNXR94777"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACM6PH",
"name":"N-acetylmuramate 6-phosphate hydrolase",
"metabolites":{
"acgam6p_c":1.0,
"acmum6p_c":-1.0,
"h2o_c":-1.0,
"lac__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ACM6PH"
]
},
"annotation":{
"bigg.reaction":[
"ACM6PH"
],
"ec-code":[
"4.2.1.126"
],
"kegg.reaction":[
"R08555"
],
"metanetx.reaction":[
"MNXR95273"
],
"rhea":[
"26411",
"26410",
"26413",
"26412"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08044"
]
}
},
{
"id":"3OAS141",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:1)",
"metabolites":{
"3ocmrs7eACP_c":1.0,
"ACP_c":1.0,
"cddec5eACP_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS141"
]
},
"annotation":{
"bigg.reaction":[
"3OAS141"
],
"ec-code":[
"2.3.1.41"
],
"metanetx.reaction":[
"MNXR94958"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACMAMUT",
"name":"UDP-N-acetyl-D-mannosaminuronic acid transferase",
"metabolites":{
"h_c":1.0,
"uacmamu_c":-1.0,
"udp_c":1.0,
"unaga_c":-1.0,
"unagamu_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3929",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACMAMUT"
]
},
"annotation":{
"bigg.reaction":[
"ACMAMUT"
],
"biocyc":[
"META:UDPMANACATRANS-RXN"
],
"ec-code":[
"2.4.1.180"
],
"kegg.reaction":[
"R04477"
],
"metanetx.reaction":[
"MNXR95274"
],
"rhea":[
"28367",
"28369",
"28368",
"28366"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08045"
]
}
},
{
"id":"3OAS160",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:0)",
"metabolites":{
"3opalmACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"myrsACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378 or STM1197",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS160"
]
},
"annotation":{
"bigg.reaction":[
"3OAS160"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94959"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACMANAptspp",
"name":"N-acetyl-D-mannosamine transport via PTS  (periplasm)",
"metabolites":{
"acmana_p":-1.0,
"acmanap_c":1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1830 and STM1831 and STM1832 and STM2431 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACMANAptspp"
]
},
"annotation":{
"bigg.reaction":[
"ACMANAptspp"
],
"metanetx.reaction":[
"MNXR95275"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08046",
"rxn10183"
]
}
},
{
"id":"3OAS161",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C16:1)",
"metabolites":{
"3ocpalm9eACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"tdeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS161"
]
},
"annotation":{
"bigg.reaction":[
"3OAS161"
],
"ec-code":[
"2.3.1.41"
],
"metanetx.reaction":[
"MNXR94960"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACMANAtex",
"name":"N-acetyl-D-mannosamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acmana_e":-1.0,
"acmana_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2267 or STM0320 or STM0999 or STM1473",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACMANAtex"
]
},
"annotation":{
"bigg.reaction":[
"ACMANAtex"
],
"metanetx.reaction":[
"MNXR95277"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08047"
]
}
},
{
"id":"ACMUMtex",
"name":"N-acetylmuramate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acmum_e":-1.0,
"acmum_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACMUMtex"
]
},
"annotation":{
"bigg.reaction":[
"ACMUMtex"
],
"metanetx.reaction":[
"MNXR95279"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08049"
]
}
},
{
"id":"2DGLCNRx",
"name":"2-dehydro-D-gluconate reductase (NADH)",
"metabolites":{
"2dhglcn_c":-1.0,
"glcn_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"2DGLCNRx"
]
},
"annotation":{
"bigg.reaction":[
"2DGLCNRx"
],
"metanetx.reaction":[
"MNXR94783"
],
"rhea":[
"27912",
"27911",
"27913",
"27910"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07967"
]
}
},
{
"id":"2DGLCNRy",
"name":"2-dehydro-D-gluconate reductase (NADPH)",
"metabolites":{
"2dhglcn_c":-1.0,
"glcn_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"2DGLCNRy"
]
},
"annotation":{
"bigg.reaction":[
"2DGLCNRy"
],
"biocyc":[
"META:1.1.1.215-RXN"
],
"ec-code":[
"1.1.1.215"
],
"kegg.reaction":[
"R01739"
],
"metanetx.reaction":[
"MNXR94784"
],
"rhea":[
"16656",
"16655",
"16653",
"16654"
],
"sabiork":[
"1847"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01277",
"rxn14160"
]
}
},
{
"id":"2DGULRx",
"name":"2-dehydro-L-gulonate reductase (NADH)",
"metabolites":{
"2dhguln_c":-1.0,
"h_c":-1.0,
"idon__L_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"2DGULRx"
]
},
"annotation":{
"bigg.reaction":[
"2DGULRx"
],
"metanetx.reaction":[
"MNXR94787"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07969"
]
}
},
{
"id":"2DGULRy",
"name":"2-dehydro-L-gulonate reductase (NADPH)",
"metabolites":{
"2dhguln_c":-1.0,
"h_c":-1.0,
"idon__L_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"2DGULRy"
]
},
"annotation":{
"bigg.reaction":[
"2DGULRy"
],
"metanetx.reaction":[
"MNXR94788"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07970"
]
}
},
{
"id":"ACNAMt2pp",
"name":"N-acetylneuraminate proton symport (periplasm)",
"metabolites":{
"acnam_c":1.0,
"acnam_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3338",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACNAMt2pp"
]
},
"annotation":{
"bigg.reaction":[
"ACNAMt2pp"
],
"biocyc":[
"META:TRANS-RXN-25",
"META:RXN-15314"
],
"metanetx.reaction":[
"MNXR95291"
],
"rhea":[
"28990",
"28989",
"28987",
"28988"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05487",
"rxn08050"
]
}
},
{
"id":"ACNAMtex",
"name":"N-acetylneuraminate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acnam_e":-1.0,
"acnam_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0999 or STM2267",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"ACNAMtex"
]
},
"annotation":{
"bigg.reaction":[
"ACNAMtex"
],
"biocyc":[
"META:RXN-15315",
"META:RXN0-0"
],
"metanetx.reaction":[
"MNXR95292"
],
"rhea":[
"28994",
"28993",
"28992",
"28991"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08051"
]
}
},
{
"id":"ACNML",
"name":"N-Acetylneuraminate lyase",
"metabolites":{
"acmana_c":1.0,
"acnam_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3339",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ACNML"
]
},
"annotation":{
"bigg.reaction":[
"ACNML"
],
"biocyc":[
"META:ACNEULY-RXN"
],
"ec-code":[
"4.1.3.3"
],
"kegg.reaction":[
"R01811"
],
"metanetx.reaction":[
"MNXR95296"
],
"rhea":[
"23297",
"23298",
"23296",
"23299"
],
"sabiork":[
"7666"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01322"
]
}
},
{
"id":"ACOAD1f",
"name":"Acyl-CoA dehydrogenase (butanoyl-CoA)",
"metabolites":{
"b2coa_c":1.0,
"btcoa_c":-1.0,
"fad_c":-1.0,
"fadh2_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0309",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD1f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD1f"
],
"ec-code":[
"1.3.99.3",
"1.3.8.1",
"1.3.99.-",
"1.3.3.6",
"1.3.8.7"
],
"kegg.reaction":[
"R01175"
],
"metanetx.reaction":[
"MNXR95302"
],
"reactome.reaction":[
"R-BTA-77319",
"R-RNO-77319",
"R-DRE-77319",
"R-GGA-77319",
"R-CFA-77319",
"R-TGU-77319",
"R-DME-77319",
"R-MMU-77319",
"R-XTR-77319",
"R-HSA-77319",
"R-SSC-77319"
],
"rhea":[
"24006",
"30733",
"24007",
"30734",
"24005",
"24004",
"30731",
"30732"
],
"sabiork":[
"1412"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00872"
]
}
},
{
"id":"ACOAD2f",
"name":"Acyl-CoA dehydrogenase (hexanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"hx2coa_c":1.0,
"hxcoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0309",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD2f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD2f"
],
"ec-code":[
"1.3.99.3"
],
"metanetx.reaction":[
"MNXR95303"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2MAHMP",
"name":"2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphatase",
"metabolites":{
"2mahmp_c":-1.0,
"4ampm_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0457 or STM1235",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"2MAHMP"
]
},
"annotation":{
"bigg.reaction":[
"2MAHMP"
],
"metanetx.reaction":[
"MNXR142616"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07971"
]
}
},
{
"id":"3OAS180",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:0)",
"metabolites":{
"3ooctdACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0,
"palmACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1197 or STM2378",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS180"
]
},
"annotation":{
"bigg.reaction":[
"3OAS180"
],
"ec-code":[
"2.3.1.41"
],
"metanetx.reaction":[
"MNXR94961"
],
"sbo":"SBO:0000176"
}
},
{
"id":"34dhpactex",
"name":"Dihydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm)",
"metabolites":{
"34dhpac_e":-1.0,
"34dhpac_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"34dhpactex"
]
},
"annotation":{
"bigg.reaction":[
"34dhpactex"
],
"metanetx.reaction":[
"MNXR94848"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07972"
]
}
},
{
"id":"3AMPtex",
"name":"3AMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"3amp_e":-1.0,
"3amp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"3AMPtex"
]
},
"annotation":{
"bigg.reaction":[
"3AMPtex"
],
"metanetx.reaction":[
"MNXR94857"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07973"
]
}
},
{
"id":"ACOAD3f",
"name":"Acyl-CoA dehydrogenase (octanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"oc2coa_c":1.0,
"occoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0309",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD3f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD3f"
],
"ec-code":[
"1.3.99.3",
"1.3.99.-",
"1.3.3.6",
"1.3.8.8",
"1.3.8.7"
],
"kegg.reaction":[
"R03777"
],
"metanetx.reaction":[
"MNXR95304"
],
"reactome.reaction":[
"R-CFA-77338",
"R-SSC-77338",
"R-XTR-77338",
"R-MMU-77338",
"R-HSA-77338",
"R-DME-77338",
"R-BTA-77338",
"R-CEL-77338",
"R-DRE-77338",
"R-RNO-77338",
"R-TGU-77338"
],
"rhea":[
"48182",
"30945",
"30944",
"48183",
"48181",
"48180",
"30943",
"30946"
],
"sabiork":[
"3536"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02679"
]
}
},
{
"id":"ACOAD4f",
"name":"Acyl-CoA dehydrogenase (decanoyl-CoA)",
"metabolites":{
"dc2coa_c":1.0,
"dcacoa_c":-1.0,
"fad_c":-1.0,
"fadh2_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0309",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD4f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD4f"
],
"ec-code":[
"1.3.99.3"
],
"metanetx.reaction":[
"MNXR95298"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACOAD5f",
"name":"Acyl-CoA dehydrogenase (dodecanoyl-CoA)",
"metabolites":{
"dd2coa_c":1.0,
"ddcacoa_c":-1.0,
"fad_c":-1.0,
"fadh2_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0309",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD5f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD5f"
],
"ec-code":[
"1.3.99.3",
"1.3.99.-",
"1.3.3.6",
"1.3.8.8",
"1.3.8.7"
],
"kegg.reaction":[
"R03857"
],
"metanetx.reaction":[
"MNXR95299"
],
"reactome.reaction":[
"R-RNO-77263",
"R-BTA-77263",
"R-MMU-77263",
"R-XTR-77263",
"R-HSA-77263",
"R-GGA-77263",
"R-DRE-77263",
"R-TGU-77263",
"R-SSC-77263",
"R-CFA-77263"
],
"rhea":[
"47298",
"47296",
"31040",
"47297",
"31042",
"31039",
"47299",
"31041"
],
"sabiork":[
"3607"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02720"
]
}
},
{
"id":"3CMPtex",
"name":"3CMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"3cmp_e":-1.0,
"3cmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"3CMPtex"
]
},
"annotation":{
"bigg.reaction":[
"3CMPtex"
],
"metanetx.reaction":[
"MNXR94861"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07974"
]
}
},
{
"id":"3OAS181",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C18:1)",
"metabolites":{
"3ocvac11eACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"hdeACP_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1197",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS181"
]
},
"annotation":{
"bigg.reaction":[
"3OAS181"
],
"ec-code":[
"2.3.1.179"
],
"metanetx.reaction":[
"MNXR94962"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3GMPtex",
"name":"3GMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"3gmp_e":-1.0,
"3gmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM1473 or STM2267 or STM0999",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"3GMPtex"
]
},
"annotation":{
"bigg.reaction":[
"3GMPtex"
],
"metanetx.reaction":[
"MNXR94868"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn07975"
]
}
},
{
"id":"3HAD100",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C10:0)",
"metabolites":{
"3hdecACP_c":-1.0,
"h2o_c":1.0,
"tdec2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD100"
]
},
"annotation":{
"bigg.reaction":[
"3HAD100"
],
"ec-code":[
"2.3.1.85",
"4.2.1.58",
"4.2.1.60",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04535"
],
"metanetx.reaction":[
"MNXR94876"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05333"
]
}
},
{
"id":"3HAD120",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:0)",
"metabolites":{
"3hddecACP_c":-1.0,
"h2o_c":1.0,
"tddec2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD120"
]
},
"annotation":{
"bigg.reaction":[
"3HAD120"
],
"ec-code":[
"2.3.1.85",
"4.2.1.58",
"4.2.1.60",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04965"
],
"metanetx.reaction":[
"MNXR94877"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05331"
]
}
},
{
"id":"ACOAD6f",
"name":"Acyl-CoA dehydrogenase (tetradecanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"td2coa_c":1.0,
"tdcoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0309",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD6f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD6f"
],
"ec-code":[
"1.3.99.3",
"1.3.8.9",
"1.3.99.-",
"1.3.3.6",
"1.3.8.8",
"1.3.8.7"
],
"kegg.reaction":[
"R03990"
],
"metanetx.reaction":[
"MNXR95300"
],
"reactome.reaction":[
"R-MMU-77274",
"R-SSC-77274",
"R-DRE-77274",
"R-GGA-77274",
"R-RNO-77274",
"R-XTR-77274",
"R-TGU-77274",
"R-CFA-77274",
"R-HSA-77274",
"R-BTA-77274"
],
"rhea":[
"28361",
"28358",
"28359",
"47319",
"47318",
"47316",
"47317",
"28360"
],
"sabiork":[
"3725"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02803"
]
}
},
{
"id":"ACOAD7f",
"name":"Acyl-CoA dehydrogenase (hexadecanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"hdd2coa_c":1.0,
"pmtcoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0309",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD7f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD7f"
],
"ec-code":[
"1.3.99.3",
"1.3.8.9",
"1.3.99.-",
"1.3.3.6",
"1.3.8.8",
"1.3.8.7"
],
"kegg.reaction":[
"R01279"
],
"metanetx.reaction":[
"MNXR95301"
],
"rhea":[
"43449",
"30748",
"43448",
"30747",
"43451",
"30750",
"30749",
"43450"
],
"sabiork":[
"1495"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00946"
]
}
},
{
"id":"ACOAD8f",
"name":"Acyl-CoA dehydrogenase (octadecanoyl-CoA)",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"od2coa_c":1.0,
"stcoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0309",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOAD8f"
]
},
"annotation":{
"bigg.reaction":[
"ACOAD8f"
],
"metanetx.reaction":[
"MNXR95317"
],
"rhea":[
"40846",
"47240",
"40844",
"47243",
"40843",
"47242",
"40845",
"47241"
],
"sabiork":[
"11499"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08053"
]
}
},
{
"id":"ACOATA",
"name":"Acetyl-CoA ACP transacylase",
"metabolites":{
"ACP_c":-1.0,
"acACP_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1196 and STM1193",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ACOATA"
]
},
"annotation":{
"bigg.reaction":[
"ACOATA"
],
"biocyc":[
"META:ACP-S-ACETYLTRANSFER-RXN"
],
"ec-code":[
"2.3.1.180",
"2.3.1.85",
"2.3.1.86",
"2.3.1.179",
"2.3.1.-",
"2.3.1.38",
"2.3.1.41"
],
"kegg.reaction":[
"R01624"
],
"metanetx.reaction":[
"MNXR95376"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05349"
]
}
},
{
"id":"3HAD121",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C12:1)",
"metabolites":{
"3hcddec5eACP_c":-1.0,
"h2o_c":1.0,
"t3c5ddeceACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0227 or STM1067",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD121"
]
},
"annotation":{
"bigg.reaction":[
"3HAD121"
],
"ec-code":[
"4.2.1.61"
],
"metanetx.reaction":[
"MNXR94878"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07976"
]
}
},
{
"id":"ACODA",
"name":"Acetylornithine deacetylase",
"metabolites":{
"ac_c":1.0,
"acorn_c":-1.0,
"h2o_c":-1.0,
"orn_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4120",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ACODA"
]
},
"annotation":{
"bigg.reaction":[
"ACODA"
],
"biocyc":[
"META:ACETYLORNDEACET-RXN"
],
"ec-code":[
"3.5.1.16",
"3.5.1.14"
],
"kegg.reaction":[
"R00669"
],
"metanetx.reaction":[
"MNXR95377"
],
"rhea":[
"15941",
"15942",
"15944",
"15943"
],
"sabiork":[
"1049"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00469"
]
}
},
{
"id":"3OAS60",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C6:0)",
"metabolites":{
"3ohexACP_c":1.0,
"ACP_c":1.0,
"butACP_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378 or STM1197",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS60"
]
},
"annotation":{
"bigg.reaction":[
"3OAS60"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94963"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3HAD140",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:0)",
"metabolites":{
"3hmrsACP_c":-1.0,
"h2o_c":1.0,
"tmrs2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD140"
]
},
"annotation":{
"bigg.reaction":[
"3HAD140"
],
"biocyc":[
"META:RXN-9537"
],
"ec-code":[
"2.3.1.85",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04568"
],
"metanetx.reaction":[
"MNXR94879"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05335"
]
}
},
{
"id":"3OAS80",
"name":"3-oxoacyl-[acyl-carrier-protein] synthase (n-C8:0)",
"metabolites":{
"3ooctACP_c":1.0,
"ACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"hexACP_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378 or STM1197",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3OAS80"
]
},
"annotation":{
"bigg.reaction":[
"3OAS80"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR94964"
],
"sbo":"SBO:0000176"
}
},
{
"id":"3HAD141",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C14:1)",
"metabolites":{
"3hcmrs7eACP_c":-1.0,
"h2o_c":1.0,
"t3c7mrseACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD141"
]
},
"annotation":{
"bigg.reaction":[
"3HAD141"
],
"ec-code":[
"4.2.1.61"
],
"metanetx.reaction":[
"MNXR94880"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07977"
]
}
},
{
"id":"3PEPTabcpp",
"name":"Tripeptide (LalaDgluMdap) transport via ABC system (periplasm)",
"metabolites":{
"LalaDgluMdap_c":1.0,
"LalaDgluMdap_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1679 and STM1745 and STM1744 and STM1743 and STM1742",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"3PEPTabcpp"
]
},
"annotation":{
"bigg.reaction":[
"3PEPTabcpp"
],
"metanetx.reaction":[
"MNXR94970"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08003"
]
}
},
{
"id":"3HAD160",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:0)",
"metabolites":{
"3hpalmACP_c":-1.0,
"h2o_c":1.0,
"tpalm2eACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067 or STM0227",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD160"
]
},
"annotation":{
"bigg.reaction":[
"3HAD160"
],
"ec-code":[
"2.3.1.85",
"2.3.1.86",
"4.2.1.61",
"4.2.1.59",
"2.3.1.-"
],
"kegg.reaction":[
"R04544"
],
"metanetx.reaction":[
"MNXR94881"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05332"
]
}
},
{
"id":"3HAD161",
"name":"3-hydroxyacyl-[acyl-carrier-protein] dehydratase (n-C16:1)",
"metabolites":{
"3hcpalm9eACP_c":-1.0,
"h2o_c":1.0,
"t3c9palmeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0227 or STM1067",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"3HAD161"
]
},
"annotation":{
"bigg.reaction":[
"3HAD161"
],
"ec-code":[
"4.2.1.61"
],
"metanetx.reaction":[
"MNXR94882"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07978"
]
}
},
{
"id":"ACOLIPAtex",
"name":"Arabinose modified core oligosaccharide lipid A transport via vector (periplasm to extracellular)",
"metabolites":{
"acolipa_e":1.0,
"acolipa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ACOLIPAtex"
]
},
"annotation":{
"bigg.reaction":[
"ACOLIPAtex"
],
"metanetx.reaction":[
"MNXR95379"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08056"
]
}
},
{
"id":"ACONIs",
"name":"Aconitate isomerase (spontaneous)",
"metabolites":{
"acon_C_c":1.0,
"acon_T_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"ACONIs"
]
},
"annotation":{
"bigg.reaction":[
"ACONIs"
],
"biocyc":[
"META:ACONITATE-DELTA-ISOMERASE-RXN"
],
"ec-code":[
"5.3.3.7"
],
"kegg.reaction":[
"R02244"
],
"metanetx.reaction":[
"MNXR95382"
],
"rhea":[
"17266",
"17268",
"17267",
"17265"
],
"sabiork":[
"2214"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01606"
]
}
},
{
"id":"ACONTa",
"name":"Aconitase (half-reaction A, Citrate hydro-lyase)",
"metabolites":{
"acon_C_c":1.0,
"cit_c":-1.0,
"h2o_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0158 or STM1712",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"ACONTa"
]
},
"annotation":{
"bigg.reaction":[
"ACONTa"
],
"biocyc":[
"META:ACONITATEDEHYDR-RXN"
],
"ec-code":[
"4.2.1.3"
],
"kegg.reaction":[
"R01325"
],
"metanetx.reaction":[
"MNXR95386"
],
"rhea":[
"10230",
"10229",
"10231",
"10228"
],
"sabiork":[
"268"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00974"
]
}
},
{
"id":"ACONTb",
"name":"Aconitase (half-reaction B, Isocitrate hydro-lyase)",
"metabolites":{
"acon_C_c":-1.0,
"h2o_c":-1.0,
"icit_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0158 or STM1712",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"ACONTb"
]
},
"annotation":{
"bigg.reaction":[
"ACONTb"
],
"ec-code":[
"4.2.1.3"
],
"kegg.reaction":[
"R01900"
],
"metanetx.reaction":[
"MNXR95387"
],
"rhea":[
"22145",
"22144",
"22146",
"22147"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01388"
]
}
},
{
"id":"ADK1",
"name":"Adenylate kinase",
"metabolites":{
"adp_c":2.0,
"amp_c":-1.0,
"atp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ADK1"
]
},
"annotation":{
"bigg.reaction":[
"ADK1"
],
"biocyc":[
"META:ADENYL-KIN-RXN"
],
"ec-code":[
"2.7.4.3"
],
"kegg.reaction":[
"R00127"
],
"metanetx.reaction":[
"MNXR95450"
],
"reactome.reaction":[
"R-ATH-110145",
"R-SSC-110144",
"R-ATH-110144",
"R-SSC-110145",
"R-GGA-110145",
"R-PFA-110144",
"R-HSA-110145",
"R-RNO-110144",
"R-OSA-110145",
"R-SCE-110145",
"R-RNO-110145",
"R-XTR-110144",
"R-SCE-110144",
"R-PFA-110145",
"R-OSA-110144",
"R-HSA-110144",
"R-BTA-110144",
"R-DRE-110145",
"R-DRE-110144",
"R-SPO-110145",
"R-CEL-110144",
"R-CFA-110144",
"R-XTR-110145",
"R-MMU-110144",
"R-DME-110144",
"R-SPO-110144",
"R-DDI-110145",
"R-GGA-110144",
"R-TGU-110144",
"R-BTA-110145",
"R-CEL-110145",
"R-CFA-110145",
"R-DME-110145",
"R-TGU-110145",
"R-DDI-110144",
"R-MMU-110145"
],
"rhea":[
"12975",
"12973",
"12976",
"12974"
],
"sabiork":[
"82"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00097"
]
}
},
{
"id":"ADK3",
"name":"Adentylate kinase (GTP)",
"metabolites":{
"adp_c":1.0,
"amp_c":-1.0,
"gdp_c":1.0,
"gtp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ADK3"
]
},
"annotation":{
"bigg.reaction":[
"ADK3"
],
"biocyc":[
"META:RXN-14074"
],
"ec-code":[
"2.7.4.10",
"2.7.4.4"
],
"metanetx.reaction":[
"MNXR95452"
],
"reactome.reaction":[
"R-BTA-1008248",
"R-CFA-1008248",
"R-XTR-1008248",
"R-SCE-1008248",
"R-SSC-1008248",
"R-DDI-1008248",
"R-DME-1008248",
"R-HSA-1008248",
"R-GGA-1008248",
"R-RNO-1008248",
"R-TGU-1008248",
"R-CEL-1008248",
"R-DRE-1008248",
"R-MMU-1008248"
],
"rhea":[
"29865",
"29863",
"29866",
"29864"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08066"
]
}
},
{
"id":"ACOTA",
"name":"Acetylornithine transaminase",
"metabolites":{
"acg5sa_c":1.0,
"acorn_c":-1.0,
"akg_c":-1.0,
"glu__L_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3468 or STM1303",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ACOTA"
]
},
"annotation":{
"bigg.reaction":[
"ACOTA"
],
"biocyc":[
"META:ACETYLORNTRANSAM-RXN"
],
"ec-code":[
"2.6.1.11"
],
"kegg.reaction":[
"R02283"
],
"metanetx.reaction":[
"MNXR95388"
],
"rhea":[
"18051",
"18050",
"18052",
"18049"
],
"sabiork":[
"2248"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01637"
]
}
},
{
"id":"3PEPTtex",
"name":"LalaDgluMdap (tripeptide) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"LalaDgluMdap_e":-1.0,
"LalaDgluMdap_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"3PEPTtex"
]
},
"annotation":{
"bigg.reaction":[
"3PEPTtex"
],
"metanetx.reaction":[
"MNXR94971"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08004"
]
}
},
{
"id":"ACPS1",
"name":"Acyl-carrier protein synthase",
"metabolites":{
"ACP_c":1.0,
"apoACP_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"pap_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2577 or STM3583",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ACPS1"
]
},
"annotation":{
"bigg.reaction":[
"ACPS1"
],
"ec-code":[
"2.7.8.7"
],
"metanetx.reaction":[
"MNXR95403"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06023"
]
}
},
{
"id":"ACS",
"name":"Acetyl-CoA synthetase",
"metabolites":{
"ac_c":-1.0,
"accoa_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4275",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"ACS"
]
},
"annotation":{
"bigg.reaction":[
"ACS"
],
"biocyc":[
"META:ACETATE--COA-LIGASE-RXN"
],
"ec-code":[
"6.2.1.1"
],
"kegg.reaction":[
"R00235"
],
"metanetx.reaction":[
"MNXR95413"
],
"reactome.reaction":[
"R-DME-71735",
"R-TGU-449911",
"R-BTA-8875071",
"R-CEL-71735",
"R-DRE-449911",
"R-CFA-71735",
"R-TGU-71735",
"R-SCE-71735",
"R-CFA-8875071",
"R-BTA-71735",
"R-SPO-449911",
"R-CFA-449911",
"R-MMU-8875071",
"R-GGA-8875071",
"R-OSA-71735",
"R-HSA-71735",
"R-HSA-449911",
"R-SSC-8875071",
"R-RNO-71735",
"R-SSC-449911",
"R-BTA-449911",
"R-GGA-71735",
"R-SSC-71735",
"R-XTR-449911",
"R-ATH-71735",
"R-DRE-71735",
"R-DME-8875071",
"R-DDI-8875071",
"R-XTR-8875071",
"R-PFA-449911",
"R-SCE-449911",
"R-SCE-8875071",
"R-DRE-8875071",
"R-MMU-71735",
"R-MMU-449911",
"R-XTR-71735",
"R-RNO-8875071",
"R-DDI-449911",
"R-TGU-8875071",
"R-HSA-8875071",
"R-GGA-449911",
"R-RNO-449911"
],
"rhea":[
"23179",
"23178",
"23176",
"23177"
],
"sabiork":[
"179"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00175"
]
}
},
{
"id":"ACSERtex",
"name":"O-Acetyl-L-serine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"acser_e":-1.0,
"acser_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACSERtex"
]
},
"annotation":{
"bigg.reaction":[
"ACSERtex"
],
"biocyc":[
"META:RXN0-1923"
],
"metanetx.reaction":[
"MNXR95416"
],
"rhea":[
"29659",
"29660",
"29662",
"29661"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08060",
"rxn08059"
]
}
},
{
"id":"ADK4",
"name":"Adentylate kinase (ITP)",
"metabolites":{
"adp_c":1.0,
"amp_c":-1.0,
"idp_c":1.0,
"itp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ADK4"
]
},
"annotation":{
"bigg.reaction":[
"ADK4"
],
"metanetx.reaction":[
"MNXR95453"
],
"rhea":[
"29868",
"29870",
"29869",
"29867"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08067"
]
}
},
{
"id":"ADMDC",
"name":"Adenosylmethionine decarboxylase",
"metabolites":{
"amet_c":-1.0,
"ametam_c":1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0165",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ADMDC"
]
},
"annotation":{
"bigg.reaction":[
"ADMDC"
],
"biocyc":[
"META:SAMDECARB-RXN"
],
"ec-code":[
"4.1.1.50"
],
"kegg.reaction":[
"R00178"
],
"metanetx.reaction":[
"MNXR95455"
],
"rhea":[
"15982",
"15983",
"15984",
"15981"
],
"sabiork":[
"731"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00127"
]
}
},
{
"id":"ADNCYC",
"name":"Adenylate cyclase",
"metabolites":{
"atp_c":-1.0,
"camp_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3939",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ADNCYC"
]
},
"annotation":{
"bigg.reaction":[
"ADNCYC"
],
"biocyc":[
"META:ADENYLATECYC-RXN"
],
"ec-code":[
"4.6.1.1"
],
"kegg.reaction":[
"R00089"
],
"metanetx.reaction":[
"MNXR95444"
],
"reactome.reaction":[
"R-XTR-381607",
"R-BTA-5610727",
"R-DDI-111930",
"R-DDI-381607",
"R-MMU-170676",
"R-TGU-111930",
"R-XTR-111930",
"R-XTR-5610727",
"R-MMU-5610727",
"R-BTA-164377",
"R-RNO-111930",
"R-TGU-381607",
"R-XTR-164377",
"R-CFA-111930",
"R-MMU-111930",
"R-CFA-5610727",
"R-SSC-5610727",
"R-DME-170676",
"R-XTR-170676",
"R-CEL-111930",
"R-CFA-164377",
"R-GGA-164377",
"R-HSA-164377",
"R-SSC-164377",
"R-DRE-381607",
"R-CFA-381607",
"R-BTA-381607",
"R-HSA-381607",
"R-DDI-170676",
"R-DME-164377",
"R-DRE-111930",
"R-HSA-5610727",
"R-SSC-381607",
"R-CEL-170676",
"R-DME-111930",
"R-RNO-170676",
"R-TGU-164377",
"R-BTA-170676",
"R-GGA-381607",
"R-TGU-5610727",
"R-RNO-381607",
"R-DRE-164377",
"R-DRE-170676",
"R-BTA-111930",
"R-HSA-170676",
"R-MMU-164377",
"R-RNO-164377",
"R-DDI-164377",
"R-DME-381607",
"R-GGA-5610727",
"R-HSA-5211224",
"R-DRE-5610727",
"R-RNO-5610727",
"R-MMU-381607",
"R-HSA-111930",
"R-TGU-170676",
"R-GGA-111930",
"R-CFA-170676",
"R-SSC-111930",
"R-HSA-392129",
"R-SSC-170676",
"R-CEL-164377",
"R-DDI-5610727",
"R-GGA-170676",
"R-CFA-421879",
"R-DME-5610727"
],
"rhea":[
"15389",
"15390",
"15391",
"15392"
],
"sabiork":[
"101"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00065"
]
}
},
{
"id":"3UMPtex",
"name":"3UMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"3ump_e":-1.0,
"3ump_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"3UMPtex"
]
},
"annotation":{
"bigg.reaction":[
"3UMPtex"
],
"metanetx.reaction":[
"MNXR94983"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08005"
]
}
},
{
"id":"ADNK1",
"name":"Adenosine kinase",
"metabolites":{
"adn_c":-1.0,
"adp_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ADNK1"
]
},
"annotation":{
"bigg.reaction":[
"ADNK1"
],
"biocyc":[
"META:ADENOSINE-KINASE-RXN"
],
"ec-code":[
"2.7.1.74",
"2.7.1.20"
],
"kegg.reaction":[
"R00185"
],
"metanetx.reaction":[
"MNXR95456"
],
"rhea":[
"20827",
"20824",
"20826",
"20825"
],
"sabiork":[
"252"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00134"
]
}
},
{
"id":"ADNUC",
"name":"Adenosine hydrolase",
"metabolites":{
"ade_c":1.0,
"adn_c":-1.0,
"h2o_c":-1.0,
"rib__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0051",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ADNUC"
]
},
"annotation":{
"bigg.reaction":[
"ADNUC"
],
"biocyc":[
"META:ADENOSINE-NUCLEOSIDASE-RXN"
],
"ec-code":[
"3.2.2.8",
"3.2.2.7",
"3.2.2.1"
],
"kegg.reaction":[
"R01245"
],
"metanetx.reaction":[
"MNXR95459"
],
"rhea":[
"18672",
"18671",
"18669",
"18670"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00927"
]
}
},
{
"id":"ADNt2pp_copy1",
"name":"Adenosine transport in via proton symport (periplasm)",
"metabolites":{
"adn_c":1.0,
"adn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113 or STM2409",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ADNt2pp",
"ADNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ADNt2pp"
],
"biocyc":[
"META:TRANS-RXN-203",
"META:TRANS-RXN-108A"
],
"metanetx.reaction":[
"MNXR95461"
],
"rhea":[
"29988",
"29990",
"29987",
"29989"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05318",
"rxn08068"
]
}
},
{
"id":"ACSERtpp",
"name":"O-Acetyl-L-serine export via facilitated transport",
"metabolites":{
"acser_c":-1.0,
"acser_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2645 or STM1517",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACSERtpp"
]
},
"annotation":{
"bigg.reaction":[
"ACSERtpp"
],
"biocyc":[
"META:RXN0-1923"
],
"metanetx.reaction":[
"MNXR95416"
],
"rhea":[
"29659",
"29660",
"29662",
"29661"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08060",
"rxn08059"
]
}
},
{
"id":"ACt2rpp",
"name":"Acetate reversible transport via proton symport (periplasm)",
"metabolites":{
"ac_c":1.0,
"ac_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ACt2rpp"
],
"biocyc":[
"META:TRANS-RXN0-571"
],
"metanetx.reaction":[
"MNXR95429"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08061",
"rxn05488"
]
}
},
{
"id":"ACt4pp",
"name":"Na+/Acetate symport (periplasm)",
"metabolites":{
"ac_c":1.0,
"ac_p":-1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4273",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACt4pp"
]
},
"annotation":{
"bigg.reaction":[
"ACt4pp"
],
"metanetx.reaction":[
"MNXR95430"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08062"
]
}
},
{
"id":"ADNt2pp_copy2",
"name":"Adenosine transport in via proton symport (periplasm)",
"metabolites":{
"adn_c":1.0,
"adn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2421",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ADNt2pp",
"ADNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ADNt2pp"
],
"biocyc":[
"META:TRANS-RXN-203",
"META:TRANS-RXN-108A"
],
"metanetx.reaction":[
"MNXR95461"
],
"rhea":[
"29988",
"29990",
"29987",
"29989"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05318",
"rxn08068"
]
}
},
{
"id":"4HOXPACDtex",
"name":"4-hydroxyphenylacetaldehyde transport via diffusion (extracellular to periplasm)",
"metabolites":{
"4hoxpacd_e":-1.0,
"4hoxpacd_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"4HOXPACDtex"
]
},
"annotation":{
"bigg.reaction":[
"4HOXPACDtex"
],
"metanetx.reaction":[
"MNXR95017"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08006"
]
}
},
{
"id":"ADNtex",
"name":"Adenosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"adn_e":-1.0,
"adn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0413",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"ADNtex"
]
},
"annotation":{
"bigg.reaction":[
"ADNtex"
],
"metanetx.reaction":[
"MNXR95460"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08069",
"rxn11000"
]
}
},
{
"id":"ADOCBLabcpp",
"name":"Adenosylcobalamin transport via ABC system (periplasm)",
"metabolites":{
"adocbl_c":1.0,
"adocbl_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1340 and STM1342 and STM0206",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ADOCBLabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ADOCBLabcpp"
],
"metanetx.reaction":[
"MNXR95471"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08070"
]
}
},
{
"id":"ACtex",
"name":"Acetate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ac_e":-1.0,
"ac_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACtex"
]
},
"annotation":{
"bigg.reaction":[
"ACtex"
],
"biocyc":[
"META:RXN0-1981",
"META:TRANS-RXN0-567"
],
"metanetx.reaction":[
"MNXR95431"
],
"rhea":[
"27817",
"27814",
"27816",
"27815"
],
"sabiork":[
"12184"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09787",
"rxn09866",
"rxn10904",
"rxn08063"
]
}
},
{
"id":"ADA",
"name":"Adenosine deaminase",
"metabolites":{
"adn_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"ins_c":1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1463",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ADA"
]
},
"annotation":{
"bigg.reaction":[
"ADA"
],
"biocyc":[
"META:ADENODEAMIN-RXN"
],
"ec-code":[
"3.5.4.4"
],
"kegg.reaction":[
"R01560"
],
"metanetx.reaction":[
"MNXR95432"
],
"reactome.reaction":[
"R-DRE-5693346",
"R-DDI-5693346",
"R-CFA-5693346",
"R-BTA-5693346",
"R-GGA-5693346",
"R-XTR-5693346",
"R-SSC-5693346",
"R-HSA-5693346",
"R-TGU-5693346",
"R-DME-5693346"
],
"rhea":[
"24411",
"24408",
"24410",
"24409"
],
"sabiork":[
"134"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01137"
]
}
},
{
"id":"ADCL",
"name":"4-aminobenzoate synthase",
"metabolites":{
"4abz_c":1.0,
"4adcho_c":-1.0,
"h_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1198",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADCL"
]
},
"annotation":{
"bigg.reaction":[
"ADCL"
],
"biocyc":[
"META:ADCLY-RXN"
],
"ec-code":[
"4.1.3.38"
],
"kegg.reaction":[
"R05553"
],
"metanetx.reaction":[
"MNXR95436"
],
"rhea":[
"16201",
"16203",
"16204",
"16202"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03841"
]
}
},
{
"id":"ADOCBLtonex",
"name":"Adenosylcobalimin transport via ton system (extermal)",
"metabolites":{
"adocbl_e":-1.0,
"adocbl_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4130 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"ADOCBLtonex"
]
},
"annotation":{
"bigg.reaction":[
"ADOCBLtonex"
],
"metanetx.reaction":[
"MNXR95472"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08071"
]
}
},
{
"id":"ADPRDP",
"name":"ADPribose diphosphatase",
"metabolites":{
"adprib_c":-1.0,
"amp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"r5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3185",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ADPRDP"
]
},
"annotation":{
"bigg.reaction":[
"ADPRDP"
],
"ec-code":[
"3.6.1.13"
],
"metanetx.reaction":[
"MNXR95480"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ADCS",
"name":"4-amino-4-deoxychorismate synthase",
"metabolites":{
"4adcho_c":1.0,
"chor_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3469 and STM1824",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADCS"
]
},
"annotation":{
"bigg.reaction":[
"ADCS"
],
"biocyc":[
"META:PABASYN-RXN"
],
"ec-code":[
"2.6.1.85"
],
"kegg.reaction":[
"R01716"
],
"metanetx.reaction":[
"MNXR95440"
],
"rhea":[
"11672",
"11675",
"11673",
"11674"
],
"sabiork":[
"1828"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01257"
]
}
},
{
"id":"ADEt2rpp",
"name":"Adenine transport via proton symport (reversible) (periplasm)",
"metabolites":{
"ade_c":1.0,
"ade_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3747",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ADEt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ADEt2rpp"
],
"biocyc":[
"META:TRANS-RXN-198",
"META:TRANS-RXN0-447"
],
"metanetx.reaction":[
"MNXR95446"
],
"rhea":[
"28722",
"28720",
"28719",
"28721"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08064",
"rxn05491"
]
}
},
{
"id":"ADEtex",
"name":"Adenine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ade_e":-1.0,
"ade_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ADEtex"
]
},
"annotation":{
"bigg.reaction":[
"ADEtex"
],
"biocyc":[
"META:TRANS-RXN0-577"
],
"metanetx.reaction":[
"MNXR95445"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10918",
"rxn08065",
"rxn09786"
]
}
},
{
"id":"ADPT",
"name":"Adenine phosphoribosyltransferase",
"metabolites":{
"ade_c":-1.0,
"amp_c":1.0,
"ppi_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0483",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ADPT"
]
},
"annotation":{
"bigg.reaction":[
"ADPT"
],
"biocyc":[
"META:ADENPRIBOSYLTRAN-RXN"
],
"ec-code":[
"2.4.2.8",
"2.4.2.7"
],
"kegg.reaction":[
"R00190"
],
"metanetx.reaction":[
"MNXR95482"
],
"reactome.reaction":[
"R-RNO-74213",
"R-ATH-74213",
"R-BTA-74213",
"R-XTR-74213",
"R-HSA-74213",
"R-SCE-74213",
"R-GGA-74213",
"R-CFA-74213",
"R-OSA-74213",
"R-TGU-74213",
"R-SSC-74213",
"R-SPO-74213",
"R-CEL-74213",
"R-DRE-74213",
"R-DDI-74213",
"R-MMU-74213",
"R-DME-74213"
],
"rhea":[
"16610",
"16612",
"16611",
"16609"
],
"sabiork":[
"80"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00139"
]
}
},
{
"id":"ADSK",
"name":"Adenylyl-sulfate kinase",
"metabolites":{
"adp_c":1.0,
"aps_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"paps_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2933",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"ADSK"
]
},
"annotation":{
"bigg.reaction":[
"ADSK"
],
"biocyc":[
"META:ADENYLYLSULFKIN-RXN"
],
"ec-code":[
"2.7.1.25"
],
"kegg.reaction":[
"R00509"
],
"metanetx.reaction":[
"MNXR95159"
],
"reactome.reaction":[
"R-GGA-174389",
"R-CFA-174389",
"R-DRE-174389",
"R-HSA-174389",
"R-SCE-174389",
"R-XTR-174389",
"R-TGU-174389",
"R-SPO-174389",
"R-CEL-174389",
"R-RNO-174389",
"R-ATH-174389",
"R-MMU-174389",
"R-SSC-174389",
"R-OSA-174389",
"R-DME-174389",
"R-BTA-174389"
],
"rhea":[
"24155",
"24152",
"24154",
"24153"
],
"sabiork":[
"237"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00361"
]
}
},
{
"id":"ADSL1r",
"name":"Adenylsuccinate lyase",
"metabolites":{
"amp_c":1.0,
"dcamp_c":-1.0,
"fum_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1232",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADSL1r"
]
},
"annotation":{
"bigg.reaction":[
"ADSL1r"
],
"biocyc":[
"META:AMPSYN-RXN"
],
"ec-code":[
"4.3.2.2"
],
"kegg.reaction":[
"R01083"
],
"metanetx.reaction":[
"MNXR95493"
],
"reactome.reaction":[
"R-GGA-421197",
"R-CEL-73828",
"R-DME-73828",
"R-PFA-73828",
"R-OSA-73828",
"R-RNO-73828",
"R-TGU-73828",
"R-ATH-73828",
"R-XTR-73828",
"R-MMU-73828",
"R-BTA-73828",
"R-SCE-73828",
"R-DRE-73828",
"R-GGA-73828",
"R-HSA-73828",
"R-SPO-73828",
"R-SSC-73828",
"R-DDI-73828"
],
"rhea":[
"16854",
"16853",
"16856",
"16855"
],
"sabiork":[
"306"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00800"
]
}
},
{
"id":"4PCP",
"name":"Tetrapeptide L,D-carboxypeptidase",
"metabolites":{
"LalaDgluMdapDala_c":-1.0,
"LalaDgluMdap_c":1.0,
"ala__D_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1800",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"4PCP"
]
},
"annotation":{
"bigg.reaction":[
"4PCP"
],
"metanetx.reaction":[
"MNXR95049"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08007"
]
}
},
{
"id":"ADSL2r",
"name":"Adenylosuccinate lyase",
"metabolites":{
"25aics_c":-1.0,
"aicar_c":1.0,
"fum_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1232",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADSL2r"
]
},
"annotation":{
"bigg.reaction":[
"ADSL2r"
],
"biocyc":[
"META:AICARSYN-RXN"
],
"ec-code":[
"4.3.2.2"
],
"kegg.reaction":[
"R04559"
],
"metanetx.reaction":[
"MNXR108966"
],
"reactome.reaction":[
"R-BTA-73800",
"R-SCE-73800",
"R-DME-73800",
"R-RNO-73800",
"R-ATH-73800",
"R-CEL-73800",
"R-TGU-73800",
"R-SSC-73800",
"R-PFA-73800",
"R-SPO-73800",
"R-GGA-419255",
"R-DDI-73800",
"R-OSA-73800",
"R-MMU-73800",
"R-GGA-73800",
"R-XTR-73800",
"R-DRE-73800",
"R-HSA-73800"
],
"rhea":[
"23920",
"23923",
"23922",
"23921"
],
"sabiork":[
"121"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ADSS",
"name":"Adenylosuccinate synthase",
"metabolites":{
"asp__L_c":-1.0,
"dcamp_c":1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"h_c":2.0,
"imp_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4366",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADSS"
]
},
"annotation":{
"bigg.reaction":[
"ADSS"
],
"biocyc":[
"META:ADENYLOSUCCINATE-SYNTHASE-RXN"
],
"ec-code":[
"6.3.4.4"
],
"kegg.reaction":[
"R01135"
],
"metanetx.reaction":[
"MNXR95495"
],
"reactome.reaction":[
"R-GGA-421201",
"R-HSA-111524",
"R-SSC-111524",
"R-SCE-111524",
"R-MMU-111524",
"R-MMU-111519",
"R-DDI-111524",
"R-RNO-111524",
"R-SPO-111524",
"R-CFA-111524",
"R-OSA-111524",
"R-CEL-111524",
"R-DRE-111524",
"R-DME-111524",
"R-ATH-111524",
"R-GGA-111524",
"R-BTA-111524",
"R-TGU-111524",
"R-XTR-111524",
"R-PFA-111524"
],
"rhea":[
"15755",
"15756",
"15753",
"15754"
],
"sabiork":[
"228"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00838"
]
}
},
{
"id":"AGDC",
"name":"N-acetylglucosamine-6-phosphate deacetylase",
"metabolites":{
"ac_c":1.0,
"acgam6p_c":-1.0,
"gam6p_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0683",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AGDC"
]
},
"annotation":{
"bigg.reaction":[
"AGDC"
],
"biocyc":[
"META:NAG6PDEACET-RXN"
],
"ec-code":[
"3.5.1.25"
],
"kegg.reaction":[
"R02059"
],
"metanetx.reaction":[
"MNXR95528"
],
"rhea":[
"22936",
"22938",
"22937",
"22939"
],
"sabiork":[
"2076"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01484"
]
}
},
{
"id":"ALDD3y",
"name":"Aldehyde dehydrogenase (propanal, NADP)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"ppa_c":1.0,
"ppal_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3680",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ALDD3y"
]
},
"annotation":{
"bigg.reaction":[
"ALDD3y"
],
"metanetx.reaction":[
"MNXR95754"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ALLTAMH",
"name":"Allantoate amidohydrolase",
"metabolites":{
"alltt_c":-1.0,
"co2_c":1.0,
"h2o_c":-2.0,
"h_c":-2.0,
"nh4_c":2.0,
"urdglyc_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0527",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ALLTAMH"
]
},
"annotation":{
"bigg.reaction":[
"ALLTAMH"
],
"ec-code":[
"3.5.3.9"
],
"metanetx.reaction":[
"MNXR95768"
],
"rhea":[
"32279",
"32281",
"32282",
"32280"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08114"
]
}
},
{
"id":"AGM3PA",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase",
"metabolites":{
"LalaDgluMdap_c":1.0,
"anhgm3p_c":-1.0,
"anhgm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0146",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM3PA"
]
},
"annotation":{
"bigg.reaction":[
"AGM3PA"
],
"metanetx.reaction":[
"MNXR95543"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08073"
]
}
},
{
"id":"4PCPpp",
"name":"Tetrapeptide L,D-carboxypeptidase (periplasm)",
"metabolites":{
"LalaDgluMdapDala_p":-1.0,
"LalaDgluMdap_p":1.0,
"ala__D_p":1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"4PCPpp"
]
},
"annotation":{
"bigg.reaction":[
"4PCPpp"
],
"metanetx.reaction":[
"MNXR95049"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08007"
]
}
},
{
"id":"AGM3PApp",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide amidase (periplasm)",
"metabolites":{
"LalaDgluMdap_p":1.0,
"anhgm3p_p":-1.0,
"anhgm_p":1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4358 or STM2450 or STM2991",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM3PApp"
]
},
"annotation":{
"bigg.reaction":[
"AGM3PApp"
],
"metanetx.reaction":[
"MNXR95543"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08073"
]
}
},
{
"id":"AGM3PH",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tripeptide beta -1,4-N-acetylglucosaminidase",
"metabolites":{
"acgam_c":1.0,
"anhgm3p_c":-1.0,
"anhm3p_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1209",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM3PH"
]
},
"annotation":{
"bigg.reaction":[
"AGM3PH"
],
"metanetx.reaction":[
"MNXR95544"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08074"
]
}
},
{
"id":"ALLTN",
"name":"Allantoinase",
"metabolites":{
"alltn_c":-1.0,
"alltt_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0523",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"ALLTN"
]
},
"annotation":{
"bigg.reaction":[
"ALLTN"
],
"ec-code":[
"3.5.2.5"
],
"metanetx.reaction":[
"MNXR95769"
],
"rhea":[
"30822",
"30821",
"30819",
"30820"
],
"sabiork":[
"218"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01748"
]
}
},
{
"id":"ALLTNt2rpp",
"name":"Allantoin transport in via proton symport (periplasm)",
"metabolites":{
"alltn_c":1.0,
"alltn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0522",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ALLTNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ALLTNt2rpp"
],
"metanetx.reaction":[
"MNXR95770"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08116",
"rxn05682"
]
}
},
{
"id":"AGM3Pt2pp",
"name":"GlcNAc-anhMurNAc tripeptide transport in via proton symport (periplasm)",
"metabolites":{
"anhgm3p_c":1.0,
"anhgm3p_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0444",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM3Pt2pp"
]
},
"annotation":{
"bigg.reaction":[
"AGM3Pt2pp"
],
"metanetx.reaction":[
"MNXR95545"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08075"
]
}
},
{
"id":"ALLTNtex",
"name":"Allantoin transport via diffusion (extracellular to periplasm)",
"metabolites":{
"alltn_e":-1.0,
"alltn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ALLTNtex"
]
},
"annotation":{
"bigg.reaction":[
"ALLTNtex"
],
"biocyc":[
"META:TRANS-RXN0-557"
],
"metanetx.reaction":[
"MNXR95771"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08117",
"rxn09698"
]
}
},
{
"id":"AGM4PA",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase",
"metabolites":{
"LalaDgluMdapDala_c":1.0,
"anhgm4p_c":-1.0,
"anhgm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0146",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PA"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PA"
],
"metanetx.reaction":[
"MNXR95546"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08076"
]
}
},
{
"id":"4PEPTabcpp",
"name":"Tetrapeptide (LalaDgluMdapDala) transport via ABC system (periplasm)",
"metabolites":{
"LalaDgluMdapDala_c":1.0,
"LalaDgluMdapDala_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1746_S and STM1745 and STM1744 and STM1743 and STM1742",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"4PEPTabcpp"
]
},
"annotation":{
"bigg.reaction":[
"4PEPTabcpp"
],
"metanetx.reaction":[
"MNXR95050"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08008"
]
}
},
{
"id":"AGM4PApp",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide amidase (periplasm)",
"metabolites":{
"LalaDgluMdapDala_p":1.0,
"anhgm4p_p":-1.0,
"anhgm_p":1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2991 or STM4358 or STM2450",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PApp"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PApp"
],
"metanetx.reaction":[
"MNXR95546"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08076"
]
}
},
{
"id":"ALLtex",
"name":"Allose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"all__D_e":-1.0,
"all__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ALLtex"
]
},
"annotation":{
"bigg.reaction":[
"ALLtex"
],
"metanetx.reaction":[
"MNXR95776"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08115"
]
}
},
{
"id":"4PEPTtex",
"name":"LalaDgluMdapDala (pentapeptide) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"LalaDgluMdapDala_e":-1.0,
"LalaDgluMdapDala_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"4PEPTtex"
]
},
"annotation":{
"bigg.reaction":[
"4PEPTtex"
],
"metanetx.reaction":[
"MNXR95051"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08009"
]
}
},
{
"id":"ALR2",
"name":"Aldose reductase (methylglyoxal)",
"metabolites":{
"acetol_c":1.0,
"h_c":-1.0,
"mthgxl_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3165 or STM0255 or STM1288",
"subsystem":"Methylglyoxal Metabolism",
"notes":{
"original_bigg_ids":[
"ALR2"
]
},
"annotation":{
"bigg.reaction":[
"ALR2"
],
"biocyc":[
"META:RXN0-4281"
],
"ec-code":[
"1.1.1",
"1.1.1.-"
],
"kegg.reaction":[
"R02528"
],
"metanetx.reaction":[
"MNXR95788"
],
"rhea":[
"27986",
"27988",
"27987",
"27989"
],
"sabiork":[
"2450"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01832"
]
}
},
{
"id":"ALR4x",
"name":"Aldose reductase (acetol)",
"metabolites":{
"12ppd__R_c":1.0,
"acetol_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4108",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ALR4x"
]
},
"annotation":{
"bigg.reaction":[
"ALR4x"
],
"metanetx.reaction":[
"MNXR95790"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08122"
]
}
},
{
"id":"AGM4PCP",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase",
"metabolites":{
"ala__D_c":1.0,
"anhgm3p_c":1.0,
"anhgm4p_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1800",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PCP"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PCP"
],
"metanetx.reaction":[
"MNXR95547"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08077"
]
}
},
{
"id":"AGM4PCPpp",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase (periplasmic)",
"metabolites":{
"ala__D_p":1.0,
"anhgm3p_p":1.0,
"anhgm4p_p":-1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PCPpp"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PCPpp"
],
"metanetx.reaction":[
"MNXR95547"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08077"
]
}
},
{
"id":"AM3PA",
"name":"Anhydrous-N-Acetylmuramyl-tripeptide amidase",
"metabolites":{
"LalaDgluMdap_c":1.0,
"anhm3p_c":-1.0,
"anhm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0146",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AM3PA"
]
},
"annotation":{
"bigg.reaction":[
"AM3PA"
],
"metanetx.reaction":[
"MNXR95792"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08123"
]
}
},
{
"id":"AM4PA",
"name":"Anhydrous-N-Acetylmuramyl-tetrapeptide amidase",
"metabolites":{
"LalaDgluMdapDala_c":1.0,
"anhm4p_c":-1.0,
"anhm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0146",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AM4PA"
]
},
"annotation":{
"bigg.reaction":[
"AM4PA"
],
"metanetx.reaction":[
"MNXR95793"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08124"
]
}
},
{
"id":"5DGLCNR",
"name":"5-dehydro-D-gluconate reductase",
"metabolites":{
"5dglcn_c":-1.0,
"glcn_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4483",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"5DGLCNR"
]
},
"annotation":{
"bigg.reaction":[
"5DGLCNR"
],
"biocyc":[
"META:RXN-14367"
],
"ec-code":[
"1.1.1",
"1.1.1.69"
],
"kegg.reaction":[
"R01740"
],
"metanetx.reaction":[
"MNXR95065"
],
"rhea":[
"23937",
"23939",
"23936",
"23938"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01278"
]
}
},
{
"id":"AM4PCP",
"name":"Anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase",
"metabolites":{
"ala__D_c":1.0,
"anhm3p_c":1.0,
"anhm4p_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1800",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AM4PCP"
]
},
"annotation":{
"bigg.reaction":[
"AM4PCP"
],
"metanetx.reaction":[
"MNXR95794"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08125"
]
}
},
{
"id":"AMALT1",
"name":"Amylomaltase (maltotriose)",
"metabolites":{
"glc__D_c":1.0,
"malt_c":-1.0,
"malttr_c":-1.0,
"maltttr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3513",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMALT1"
]
},
"annotation":{
"bigg.reaction":[
"AMALT1"
],
"biocyc":[
"META:AMYLOMALT-RXN"
],
"ec-code":[
"2.4.1.25"
],
"metanetx.reaction":[
"MNXR95800"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08126"
]
}
},
{
"id":"AMALT2",
"name":"Amylomaltase (maltotetraose)",
"metabolites":{
"glc__D_c":1.0,
"malt_c":-1.0,
"maltpt_c":1.0,
"maltttr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3513",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMALT2"
]
},
"annotation":{
"bigg.reaction":[
"AMALT2"
],
"biocyc":[
"META:RXN-14260"
],
"ec-code":[
"2.4.1.25"
],
"metanetx.reaction":[
"MNXR95801"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08127"
]
}
},
{
"id":"AMALT3",
"name":"Amylomaltase (maltopentaose)",
"metabolites":{
"glc__D_c":1.0,
"malt_c":-1.0,
"malthx_c":1.0,
"maltpt_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3513",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMALT3"
]
},
"annotation":{
"bigg.reaction":[
"AMALT3"
],
"biocyc":[
"META:RXN-14261"
],
"ec-code":[
"2.4.1.25"
],
"metanetx.reaction":[
"MNXR95802"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08128"
]
}
},
{
"id":"AMALT4",
"name":"Amylomaltase (maltohexaose)",
"metabolites":{
"glc__D_c":1.0,
"malt_c":-1.0,
"malthp_c":1.0,
"malthx_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3513",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMALT4"
]
},
"annotation":{
"bigg.reaction":[
"AMALT4"
],
"biocyc":[
"META:MALTODEG-RXN"
],
"ec-code":[
"2.4.1.25"
],
"metanetx.reaction":[
"MNXR95803"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08129"
]
}
},
{
"id":"AGM4PH",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide beta -1,4-N-acetylglucosaminidase",
"metabolites":{
"acgam_c":1.0,
"anhgm4p_c":-1.0,
"anhm4p_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1209",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4PH"
]
},
"annotation":{
"bigg.reaction":[
"AGM4PH"
],
"metanetx.reaction":[
"MNXR95548"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08078"
]
}
},
{
"id":"AGM4Pt2pp",
"name":"GlcNAc-anhMurNAc tetrapeptide transport in via proton symport (periplasm)",
"metabolites":{
"anhgm4p_c":1.0,
"anhgm4p_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0444",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGM4Pt2pp"
]
},
"annotation":{
"bigg.reaction":[
"AGM4Pt2pp"
],
"metanetx.reaction":[
"MNXR95549"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08079"
]
}
},
{
"id":"AGMH",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl beta -1,4-N-acetylglucosaminidase",
"metabolites":{
"acgam_c":1.0,
"anhgm_c":-1.0,
"anhm_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1209",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGMH"
]
},
"annotation":{
"bigg.reaction":[
"AGMH"
],
"metanetx.reaction":[
"MNXR95550"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08080"
]
}
},
{
"id":"AGMHE",
"name":"ADP-D-glycero-D-manno-heptose epimerase",
"metabolites":{
"adphep_DD_c":-1.0,
"adphep_LD_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3710",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"AGMHE"
]
},
"annotation":{
"bigg.reaction":[
"AGMHE"
],
"biocyc":[
"META:5.1.3.20-RXN"
],
"ec-code":[
"5.1.3.20"
],
"kegg.reaction":[
"R05176"
],
"metanetx.reaction":[
"MNXR95551"
],
"rhea":[
"17579",
"17578",
"17577",
"17580"
],
"sabiork":[
"4793"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03511"
]
}
},
{
"id":"AGMT",
"name":"Agmatinase",
"metabolites":{
"agm_c":-1.0,
"h2o_c":-1.0,
"ptrc_c":1.0,
"urea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3078",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"AGMT"
]
},
"annotation":{
"bigg.reaction":[
"AGMT"
],
"biocyc":[
"META:AGMATIN-RXN"
],
"ec-code":[
"3.5.3.11"
],
"kegg.reaction":[
"R01157"
],
"metanetx.reaction":[
"MNXR95554"
],
"reactome.reaction":[
"R-DRE-350604",
"R-OSA-350604",
"R-SPO-350604",
"R-ATH-350604",
"R-XTR-350604",
"R-MMU-350604",
"R-SSC-350604",
"R-CFA-350604",
"R-SCE-350604",
"R-CEL-350604",
"R-RNO-350604",
"R-HSA-350604",
"R-TGU-350604",
"R-GGA-350604",
"R-BTA-350604"
],
"rhea":[
"13929",
"13931",
"13930",
"13932"
],
"sabiork":[
"595"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00858"
]
}
},
{
"id":"AGMt2pp",
"name":"GlcNAc-anhMurNAc transport in via proton symport (periplasm)",
"metabolites":{
"anhgm_c":1.0,
"anhgm_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0444",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"AGMt2pp"
]
},
"annotation":{
"bigg.reaction":[
"AGMt2pp"
],
"metanetx.reaction":[
"MNXR95555"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08081"
]
}
},
{
"id":"AMANAPEr",
"name":"N-acetylmannosamine 6-phosphate epimerase",
"metabolites":{
"acgam6p_c":1.0,
"acmanap_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3337",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMANAPEr"
]
},
"annotation":{
"bigg.reaction":[
"AMANAPEr"
],
"biocyc":[
"META:NANE-RXN"
],
"ec-code":[
"5.1.3.9"
],
"kegg.reaction":[
"R02087"
],
"metanetx.reaction":[
"MNXR95804"
],
"rhea":[
"25259",
"25257",
"25258",
"25260"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01506"
]
}
},
{
"id":"AMANK",
"name":"N-acetyl-D-mannosamine kinase",
"metabolites":{
"acmana_c":-1.0,
"acmanap_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3336",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AMANK"
]
},
"annotation":{
"bigg.reaction":[
"AMANK"
],
"biocyc":[
"META:NANK-RXN"
],
"ec-code":[
"2.7.1.60"
],
"kegg.reaction":[
"R02705"
],
"metanetx.reaction":[
"MNXR95805"
],
"reactome.reaction":[
"R-DRE-4085028",
"R-GGA-4085028",
"R-HSA-4085028",
"R-BTA-4085028",
"R-TGU-4085028",
"R-RNO-4085028",
"R-XTR-4085028",
"R-CFA-4085028",
"R-MMU-4085028"
],
"rhea":[
"25253",
"25256",
"25254",
"25255"
],
"sabiork":[
"2597"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01951"
]
}
},
{
"id":"AMAOTr",
"name":"Adenosylmethionine-8-amino-7-oxononanoate transaminase",
"metabolites":{
"8aonn_c":-1.0,
"amet_c":-1.0,
"amob_c":1.0,
"dann_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0793",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"AMAOTr"
]
},
"annotation":{
"bigg.reaction":[
"AMAOTr"
],
"biocyc":[
"META:DAPASYN-RXN"
],
"ec-code":[
"2.6.1.62"
],
"kegg.reaction":[
"R03231"
],
"metanetx.reaction":[
"MNXR95806"
],
"rhea":[
"16863",
"16861",
"16862",
"16864"
],
"sabiork":[
"3057"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02312"
]
}
},
{
"id":"AGMtex",
"name":"Agmatine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"agm_e":-1.0,
"agm_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"AGMtex"
]
},
"annotation":{
"bigg.reaction":[
"AGMtex"
],
"metanetx.reaction":[
"MNXR95556"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08082"
]
}
},
{
"id":"5DGLCNt2rpp",
"name":"5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm)",
"metabolites":{
"5dglcn_c":1.0,
"5dglcn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4482",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"5DGLCNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"5DGLCNt2rpp"
],
"biocyc":[
"META:TRANS-RXN0-228"
],
"metanetx.reaction":[
"MNXR95066"
],
"rhea":[
"28820",
"28822",
"28821",
"28819"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08011"
]
}
},
{
"id":"AGPAT120",
"name":"1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C12:0)",
"metabolites":{
"1ddecg3p_c":-1.0,
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"pa120_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3173",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT120"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT120"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95558"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT140",
"name":"1-tetradecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:0)",
"metabolites":{
"1tdecg3p_c":-1.0,
"ACP_c":1.0,
"myrsACP_c":-1.0,
"pa140_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3173",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT140"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT140"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95559"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AMMQLT8",
"name":"S-adenosylmethione:2-demthylmenaquinole methyltransferase (menaquinone 8)",
"metabolites":{
"2dmmql8_c":-1.0,
"ahcys_c":1.0,
"amet_c":-1.0,
"h_c":1.0,
"mql8_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3970",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"AMMQLT8"
]
},
"annotation":{
"bigg.reaction":[
"AMMQLT8"
],
"biocyc":[
"META:ADOMET-DMK-METHYLTRANSFER-RXN"
],
"ec-code":[
"2.1.1.163"
],
"metanetx.reaction":[
"MNXR95819"
],
"rhea":[
"30064",
"30063",
"30066",
"30065"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08130"
]
}
},
{
"id":"AMPMS2",
"name":"4-amino-2-methyl-5-phosphomethylpyrimidine synthetase",
"metabolites":{
"4ampm_c":1.0,
"air_c":-1.0,
"for_c":2.0,
"h2o_c":-1.0,
"h_c":3.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4164",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"AMPMS2"
]
},
"annotation":{
"bigg.reaction":[
"AMPMS2"
],
"metanetx.reaction":[
"MNXR142626"
],
"sbo":"SBO:0000176"
}
},
{
"id":"5DGLCNtex",
"name":"5-Dehydro-D-gluconate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"5dglcn_e":-1.0,
"5dglcn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM1473 or STM0999 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"5DGLCNtex"
]
},
"annotation":{
"bigg.reaction":[
"5DGLCNtex"
],
"metanetx.reaction":[
"MNXR95067"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08012"
]
}
},
{
"id":"AMPN",
"name":"AMP nucleosidase",
"metabolites":{
"ade_c":1.0,
"amp_c":-1.0,
"h2o_c":-1.0,
"r5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2009",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"AMPN"
]
},
"annotation":{
"bigg.reaction":[
"AMPN"
],
"ec-code":[
"3.2.2.4"
],
"metanetx.reaction":[
"MNXR95827"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AMPTASECG",
"name":"Alanyl aminopeptidase (cys-gly)",
"metabolites":{
"cgly_c":-1.0,
"cys__L_c":1.0,
"gly_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1057 or STM0316 or STM4477 or STM2536",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"AMPTASECG"
]
},
"annotation":{
"bigg.reaction":[
"AMPTASECG"
],
"biocyc":[
"META:RXN-6622"
],
"ec-code":[
"3.4.11.2",
"3.4.13.18",
"3.4.11.23",
"3.4.11.1",
"3.4.13.-"
],
"kegg.reaction":[
"R00899"
],
"metanetx.reaction":[
"MNXR95828"
],
"reactome.reaction":[
"R-CEL-1247910",
"R-SSC-1247910",
"R-HSA-1247910",
"R-MMU-1247910",
"R-TGU-1247910",
"R-DRE-1247910",
"R-DME-1247910",
"R-RNO-1247910",
"R-SPO-1247910",
"R-XTR-1247910",
"R-BTA-1247910",
"R-CFA-1247910",
"R-DDI-1247910",
"R-SCE-1247910",
"R-GGA-1247910"
],
"rhea":[
"28786",
"28785",
"28784",
"28783"
],
"sabiork":[
"1221"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00650"
]
}
},
{
"id":"AMPTASEPG",
"name":"Aminopeptidase (pro-gly)",
"metabolites":{
"gly_c":1.0,
"h2o_c":-1.0,
"pro__L_c":1.0,
"progly_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2536 or STM4477 or STM0316 or STM1057",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"AMPTASEPG"
]
},
"annotation":{
"bigg.reaction":[
"AMPTASEPG"
],
"metanetx.reaction":[
"MNXR95829"
],
"rhea":[
"28802",
"28799",
"28801",
"28800"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08133"
]
}
},
{
"id":"AGPAT141",
"name":"1-tetradec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C14:1)",
"metabolites":{
"1tdec7eg3p_c":-1.0,
"ACP_c":1.0,
"pa141_c":1.0,
"tdeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3173",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT141"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT141"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95560"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT160",
"name":"1-hexadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:0)",
"metabolites":{
"1hdecg3p_c":-1.0,
"ACP_c":1.0,
"pa160_c":1.0,
"palmACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3173",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT160"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT160"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95561"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT161",
"name":"1-hexadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C16:1)",
"metabolites":{
"1hdec9eg3p_c":-1.0,
"ACP_c":1.0,
"hdeACP_c":-1.0,
"pa161_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3173",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT161"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT161"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95564"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AMPtex",
"name":"AMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"amp_e":-1.0,
"amp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0999 or STM1473 or STM2267 or STM0320",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"AMPtex"
]
},
"annotation":{
"bigg.reaction":[
"AMPtex"
],
"metanetx.reaction":[
"MNXR95830"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08134",
"rxn13227"
]
}
},
{
"id":"5DOAN",
"name":"5'-deoxyadenosine nuclosidase",
"metabolites":{
"5drib_c":1.0,
"ade_c":1.0,
"dad_5_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0207",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"5DOAN"
]
},
"annotation":{
"bigg.reaction":[
"5DOAN"
],
"biocyc":[
"META:RXN0-6550"
],
"metanetx.reaction":[
"MNXR95069"
],
"rhea":[
"29862",
"29860",
"29859",
"29861"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13649",
"rxn08013"
]
}
},
{
"id":"ANHGMtex",
"name":"GlcNAc-anhMurNAc transport via diffusion (extracellular to periplasm)",
"metabolites":{
"anhgm_e":-1.0,
"anhgm_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ANHGMtex"
]
},
"annotation":{
"bigg.reaction":[
"ANHGMtex"
],
"metanetx.reaction":[
"MNXR95839"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08135"
]
}
},
{
"id":"ANHMK",
"name":"1,6-anhydrous-N-Acetylmuramate kinase",
"metabolites":{
"acmum6p_c":1.0,
"adp_c":1.0,
"anhm_c":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1446",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"ANHMK"
]
},
"annotation":{
"bigg.reaction":[
"ANHMK"
],
"metanetx.reaction":[
"MNXR95840"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08136"
]
}
},
{
"id":"AGPAT180",
"name":"1-octadecanoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:0)",
"metabolites":{
"1odecg3p_c":-1.0,
"ACP_c":1.0,
"ocdcaACP_c":-1.0,
"pa180_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3173",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT180"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT180"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95565"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPAT181",
"name":"1-octadec-7-enoyl-sn-glycerol 3-phosphate O-acyltransferase (n-C18:1)",
"metabolites":{
"1odec11eg3p_c":-1.0,
"ACP_c":1.0,
"octeACP_c":-1.0,
"pa181_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3173",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"AGPAT181"
]
},
"annotation":{
"bigg.reaction":[
"AGPAT181"
],
"ec-code":[
"2.3.1.51"
],
"metanetx.reaction":[
"MNXR95567"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AGPR",
"name":"N-acetyl-g-glutamyl-phosphate reductase",
"metabolites":{
"acg5p_c":1.0,
"acg5sa_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4121",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"AGPR"
]
},
"annotation":{
"bigg.reaction":[
"AGPR"
],
"biocyc":[
"META:N-ACETYLGLUTPREDUCT-RXN"
],
"ec-code":[
"1.2.1.38"
],
"kegg.reaction":[
"R03443"
],
"metanetx.reaction":[
"MNXR95530"
],
"rhea":[
"21590",
"21591",
"21588",
"21589"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02465"
]
}
},
{
"id":"AHCYSNS",
"name":"S-adenosylhomocysteine nucleosidase",
"metabolites":{
"ade_c":1.0,
"ahcys_c":-1.0,
"h2o_c":-1.0,
"rhcys_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0207",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"AHCYSNS"
]
},
"annotation":{
"bigg.reaction":[
"AHCYSNS"
],
"biocyc":[
"META:ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN"
],
"ec-code":[
"3.2.2.9"
],
"kegg.reaction":[
"R00194"
],
"metanetx.reaction":[
"MNXR95625"
],
"rhea":[
"17806",
"17808",
"17805",
"17807"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00143"
]
}
},
{
"id":"ANPRT",
"name":"Anthranilate phosphoribosyltransferase",
"metabolites":{
"anth_c":-1.0,
"ppi_c":1.0,
"pran_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1724",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"ANPRT"
]
},
"annotation":{
"bigg.reaction":[
"ANPRT"
],
"biocyc":[
"META:PRTRANS-RXN"
],
"ec-code":[
"2.4.2.18"
],
"kegg.reaction":[
"R01073"
],
"metanetx.reaction":[
"MNXR95842"
],
"rhea":[
"11771",
"11770",
"11768",
"11769"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00791"
]
}
},
{
"id":"ANS",
"name":"Anthranilate synthase",
"metabolites":{
"anth_c":1.0,
"chor_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1724 and STM1723",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"ANS"
]
},
"annotation":{
"bigg.reaction":[
"ANS"
],
"biocyc":[
"META:ANTHRANSYN-RXN"
],
"ec-code":[
"4.1.3.27"
],
"kegg.reaction":[
"R00986"
],
"metanetx.reaction":[
"MNXR95843"
],
"rhea":[
"21734",
"21733",
"21735",
"21732"
],
"sabiork":[
"1280"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00727"
]
}
},
{
"id":"AOBUTDs",
"name":"L-2-amino-3-oxobutanoate decarboxylation (spontaneous)",
"metabolites":{
"2aobut_c":-1.0,
"aact_c":1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"AOBUTDs"
]
},
"annotation":{
"bigg.reaction":[
"AOBUTDs"
],
"biocyc":[
"META:THREOSPON-RXN"
],
"ec-code":[
"1.1.1.381"
],
"kegg.reaction":[
"R03758"
],
"metanetx.reaction":[
"MNXR95851"
],
"rhea":[
"25654",
"25655",
"25653",
"25656"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02666"
]
}
},
{
"id":"AOXSr",
"name":"8-amino-7-oxononanoate synthase",
"metabolites":{
"8aonn_c":1.0,
"ala__L_c":-1.0,
"co2_c":1.0,
"coa_c":1.0,
"h_c":-1.0,
"pmcoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0795",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"AOXSr"
]
},
"annotation":{
"bigg.reaction":[
"AOXSr"
],
"biocyc":[
"META:7KAPSYN-RXN"
],
"ec-code":[
"2.3.1.47"
],
"kegg.reaction":[
"R03210"
],
"metanetx.reaction":[
"MNXR95854"
],
"rhea":[
"20713",
"20715",
"20712",
"20714"
],
"sabiork":[
"3037"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02297"
]
}
},
{
"id":"AP4AH",
"name":"Ap4A hydrolase",
"metabolites":{
"adp_c":2.0,
"ap4a_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0088",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"AP4AH"
]
},
"annotation":{
"bigg.reaction":[
"AP4AH"
],
"biocyc":[
"META:3.6.1.41-RXN"
],
"ec-code":[
"3.6.1.41"
],
"kegg.reaction":[
"R00125"
],
"metanetx.reaction":[
"MNXR95856"
],
"rhea":[
"24254",
"24253",
"24255",
"24252"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00095"
]
}
},
{
"id":"AICART",
"name":"Phosphoribosylaminoimidazolecarboxamide formyltransferase",
"metabolites":{
"10fthf_c":-1.0,
"aicar_c":-1.0,
"fprica_c":1.0,
"thf_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4176",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"AICART"
]
},
"annotation":{
"bigg.reaction":[
"AICART"
],
"ec-code":[
"2.1.2.3"
],
"kegg.reaction":[
"R04560"
],
"metanetx.reaction":[
"MNXR95639"
],
"reactome.reaction":[
"R-BTA-73798",
"R-CFA-73798",
"R-DDI-73798",
"R-GGA-419254",
"R-SCE-73798",
"R-DRE-73798",
"R-TGU-73798",
"R-ATH-73798",
"R-HSA-73798",
"R-MMU-73798",
"R-DME-73798",
"R-OSA-73798",
"R-SPO-73798",
"R-SSC-73798",
"R-XTR-73798",
"R-RNO-73798",
"R-GGA-73798"
],
"rhea":[
"22192",
"22193",
"22195",
"22194"
],
"sabiork":[
"122"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AIRC2",
"name":"Phosphoribosylaminoimidazole carboxylase",
"metabolites":{
"5caiz_c":1.0,
"adp_c":1.0,
"air_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"hco3_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0533",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"AIRC2"
]
},
"annotation":{
"bigg.reaction":[
"AIRC2"
],
"ec-code":[
"6.3.4.18"
],
"metanetx.reaction":[
"MNXR95644"
],
"rhea":[
"19318",
"19320",
"19319",
"19317"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AP5AH",
"name":"Ap5A hydrolase",
"metabolites":{
"adp_c":1.0,
"ap5a_c":-1.0,
"atp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0088",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"AP5AH"
]
},
"annotation":{
"bigg.reaction":[
"AP5AH"
],
"biocyc":[
"META:RXN-10966"
],
"ec-code":[
"3.6.1.61"
],
"kegg.reaction":[
"R09880"
],
"metanetx.reaction":[
"MNXR95859"
],
"rhea":[
"30528",
"30530",
"30527",
"30529"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08137"
]
}
},
{
"id":"A5PISO",
"name":"Arabinose-5-phosphate isomerase",
"metabolites":{
"ara5p_c":1.0,
"ru5p__D_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2838_S or STM3315",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"A5PISO"
]
},
"annotation":{
"bigg.reaction":[
"A5PISO"
],
"biocyc":[
"META:DARAB5PISOM-RXN"
],
"ec-code":[
"5.3.1.13"
],
"kegg.reaction":[
"R01530"
],
"metanetx.reaction":[
"MNXR95132"
],
"rhea":[
"23105",
"23107",
"23104",
"23106"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01117"
]
}
},
{
"id":"APRAUR",
"name":"5-amino-6-(5-phosphoribosylamino)uracil reductase",
"metabolites":{
"5aprbu_c":1.0,
"5apru_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0416",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"APRAUR"
]
},
"annotation":{
"bigg.reaction":[
"APRAUR"
],
"biocyc":[
"META:RIBOFLAVINSYNREDUC-RXN"
],
"ec-code":[
"1.1.1.193"
],
"kegg.reaction":[
"R03458"
],
"metanetx.reaction":[
"MNXR95898"
],
"rhea":[
"17848",
"17846",
"17847",
"17845"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02474"
]
}
},
{
"id":"AIRC3",
"name":"Phosphoribosylaminoimidazole carboxylase (mutase rxn)",
"metabolites":{
"5aizc_c":-1.0,
"5caiz_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0534",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"AIRC3"
]
},
"annotation":{
"bigg.reaction":[
"AIRC3"
],
"biocyc":[
"META:RXN0-743"
],
"ec-code":[
"5.4.99.18"
],
"kegg.reaction":[
"R07405"
],
"metanetx.reaction":[
"MNXR95645"
],
"rhea":[
"13194",
"13196",
"13195",
"13193"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05115"
]
}
},
{
"id":"AKGDH",
"name":"2-Oxogluterate dehydrogenase",
"metabolites":{
"akg_c":-1.0,
"co2_c":1.0,
"coa_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"succoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0154 and STM0736 and STM0737",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"AKGDH"
]
},
"annotation":{
"bigg.reaction":[
"AKGDH"
],
"biocyc":[
"META:2OXOGLUTARATEDEH-RXN"
],
"ec-code":[
"1.2.1.52",
"2.3.1.61",
"1.8.1.4",
"1.2.4.2"
],
"kegg.reaction":[
"R08549"
],
"metanetx.reaction":[
"MNXR95655"
],
"reactome.reaction":[
"R-PFA-71401",
"R-XTR-71401",
"R-SCE-71401",
"R-SSC-71401",
"R-TGU-71401",
"R-ATH-71401",
"R-OSA-71401",
"R-SPO-71401",
"R-CEL-71401",
"R-RNO-71401",
"R-DRE-71401",
"R-GGA-373042",
"R-DDI-71401",
"R-CFA-71401",
"R-HSA-71401",
"R-BTA-71401",
"R-DME-71401",
"R-MMU-71401",
"R-GGA-71401"
],
"rhea":[
"27789",
"27788",
"27786",
"27787"
],
"sabiork":[
"8163"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08094"
]
}
},
{
"id":"ARAI",
"name":"L-arabinose isomerase",
"metabolites":{
"arab__L_c":-1.0,
"rbl__L_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0102",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ARAI"
]
},
"annotation":{
"bigg.reaction":[
"ARAI"
],
"ec-code":[
"5.3.1.4",
"5.3.1.5"
],
"metanetx.reaction":[
"MNXR95922"
],
"sabiork":[
"1860"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AACPS1",
"name":"Acyl-[acyl-carrier-protein] synthetase (n-C14:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"myrsACP_c":1.0,
"ppi_c":1.0,
"ttdca_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS1"
]
},
"annotation":{
"bigg.reaction":[
"AACPS1"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95138"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ARBTNR1",
"name":"Aerobactin reductase",
"metabolites":{
"arbtn_c":2.0,
"arbtn_fe3_c":-2.0,
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ARBTNR1"
]
},
"annotation":{
"bigg.reaction":[
"ARBTNR1"
],
"metanetx.reaction":[
"MNXR95924"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08145"
]
}
},
{
"id":"ARBTNR2",
"name":"Aerobactin reductase",
"metabolites":{
"arbtn_c":2.0,
"arbtn_fe3_c":-2.0,
"fe2_c":2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ARBTNR2"
]
},
"annotation":{
"bigg.reaction":[
"ARBTNR2"
],
"metanetx.reaction":[
"MNXR95925"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08146"
]
}
},
{
"id":"AKGt2rpp",
"name":"2-oxoglutarate reversible transport via symport (periplasm)",
"metabolites":{
"akg_c":1.0,
"akg_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2654",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"AKGt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"AKGt2rpp"
],
"biocyc":[
"META:TRANS-RXN-23"
],
"metanetx.reaction":[
"MNXR95661"
],
"rhea":[
"29011",
"29013",
"29012",
"29014"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05493",
"rxn08095",
"rxn09827"
]
}
},
{
"id":"AKGtex",
"name":"Alpha-ketoglutarate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"akg_e":-1.0,
"akg_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"AKGtex"
]
},
"annotation":{
"bigg.reaction":[
"AKGtex"
],
"metanetx.reaction":[
"MNXR95663"
],
"sabiork":[
"13794"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10923",
"rxn08096",
"rxn13220"
]
}
},
{
"id":"ARBTNR3",
"name":"Aerobactin reductase",
"metabolites":{
"arbtn_c":2.0,
"arbtn_fe3_c":-2.0,
"fe2_c":2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ARBTNR3"
]
},
"annotation":{
"bigg.reaction":[
"ARBTNR3"
],
"metanetx.reaction":[
"MNXR95926"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08147"
]
}
},
{
"id":"ALAALAabcpp",
"name":"D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"alaala_c":1.0,
"alaala_p":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3630 and STM3629 and STM3628 and STM3627 and STM3626",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ALAALAabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ALAALAabcpp"
],
"metanetx.reaction":[
"MNXR95677"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08098"
]
}
},
{
"id":"AACPS2",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C14:1)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"tdeACP_c":1.0,
"ttdcea_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS2"
]
},
"annotation":{
"bigg.reaction":[
"AACPS2"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95141"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ALAALAr",
"name":"D-alanine-D-alanine ligase (reversible)",
"metabolites":{
"adp_c":1.0,
"ala__D_c":-2.0,
"alaala_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0380 or STM0130",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"ALAALAr"
]
},
"annotation":{
"bigg.reaction":[
"ALAALAr"
],
"biocyc":[
"META:DALADALALIG-RXN"
],
"ec-code":[
"6.3.2.4"
],
"kegg.reaction":[
"R01150"
],
"metanetx.reaction":[
"MNXR95678"
],
"rhea":[
"11226",
"11224",
"11225",
"11227"
],
"sabiork":[
"1391"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13802",
"rxn00851"
]
}
},
{
"id":"ALAALAtex",
"name":"D-alanyl-D-alanine (DalaDala) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"alaala_e":-1.0,
"alaala_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ALAALAtex"
]
},
"annotation":{
"bigg.reaction":[
"ALAALAtex"
],
"metanetx.reaction":[
"MNXR95679"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08099"
]
}
},
{
"id":"ARBTNabcpp",
"name":"Aerobactin transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"arbtn_fe3_c":1.0,
"arbtn_fe3_p":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0194 and STM0192 and STM0193",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ARBTNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ARBTNabcpp"
],
"metanetx.reaction":[
"MNXR95927"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13800",
"rxn08143"
]
}
},
{
"id":"ARBTNexs",
"name":"Aerobactin Fe-loading reaction (spontaneous)",
"metabolites":{
"arbtn_e":-1.0,
"arbtn_fe3_e":1.0,
"fe3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ARBTNexs"
]
},
"annotation":{
"bigg.reaction":[
"ARBTNexs"
],
"metanetx.reaction":[
"MNXR95928"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08144"
]
}
},
{
"id":"ARBTNtex",
"name":"Aerobactin secretion (to extracellular)",
"metabolites":{
"arbtn_e":1.0,
"arbtn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"ARBTNtex"
]
},
"annotation":{
"bigg.reaction":[
"ARBTNtex"
],
"metanetx.reaction":[
"MNXR95929"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08148"
]
}
},
{
"id":"ALAGLUE",
"name":"L-alanyl-gamma-glutamate epimerase",
"metabolites":{
"LalaDglu_c":-1.0,
"LalaLglu_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1681",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"ALAGLUE"
]
},
"annotation":{
"bigg.reaction":[
"ALAGLUE"
],
"biocyc":[
"META:RXN0-5228"
],
"ec-code":[
"5.1.1.20"
],
"kegg.reaction":[
"R10938"
],
"metanetx.reaction":[
"MNXR95690"
],
"rhea":[
"28394",
"28395",
"28396",
"28397"
],
"sabiork":[
"7810"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08100"
]
}
},
{
"id":"ALAR",
"name":"Alanine racemase",
"metabolites":{
"ala__D_c":1.0,
"ala__L_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4247 or STM1802",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"ALAR"
]
},
"annotation":{
"bigg.reaction":[
"ALAR"
],
"biocyc":[
"META:ALARACECAT-RXN"
],
"ec-code":[
"5.1.1.1"
],
"kegg.reaction":[
"R00401"
],
"metanetx.reaction":[
"MNXR95693"
],
"rhea":[
"20252",
"20251",
"20249",
"20250"
],
"sabiork":[
"862"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00283"
]
}
},
{
"id":"ALATA_D2",
"name":"D-alanine transaminase",
"metabolites":{
"ala__D_c":-1.0,
"pyam5p_c":1.0,
"pydx5p_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2555 or STM0934",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ALATA_D2"
]
},
"annotation":{
"bigg.reaction":[
"ALATA_D2"
],
"biocyc":[
"META:RXN0-5240"
],
"kegg.reaction":[
"R01147"
],
"metanetx.reaction":[
"MNXR95697"
],
"rhea":[
"28565",
"28562",
"28564",
"28563"
],
"sabiork":[
"1388"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00848"
]
}
},
{
"id":"AACPS3",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C16:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdca_c":-1.0,
"palmACP_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS3"
]
},
"annotation":{
"bigg.reaction":[
"AACPS3"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95142"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ALATA_L",
"name":"L-alanine transaminase",
"metabolites":{
"akg_c":-1.0,
"ala__L_c":-1.0,
"glu__L_c":1.0,
"pyr_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"ALATA_L"
]
},
"annotation":{
"bigg.reaction":[
"ALATA_L"
],
"biocyc":[
"META:ALANINE-AMINOTRANSFERASE-RXN",
"META:RXN-13698"
],
"ec-code":[
"2.6.1.2"
],
"kegg.reaction":[
"R00258"
],
"metanetx.reaction":[
"MNXR95698"
],
"reactome.reaction":[
"R-SPO-70523",
"R-DRE-507749",
"R-SSC-70524",
"R-SCE-507749",
"R-XTR-70524",
"R-SSC-507775",
"R-SPO-507749",
"R-RNO-507749",
"R-RNO-70523",
"R-DDI-70524",
"R-BTA-507749",
"R-RNO-507775",
"R-DDI-70523",
"R-SCE-507775",
"R-SPO-507775",
"R-CEL-70524",
"R-CFA-507775",
"R-HSA-70524",
"R-DME-507775",
"R-DDI-507749",
"R-CEL-70523",
"R-HSA-507749",
"R-OSA-70524",
"R-ATH-70524",
"R-SPO-70524",
"R-DME-70524",
"R-OSA-507775",
"R-SSC-70523",
"R-XTR-507775",
"R-DME-70523",
"R-SCE-70523",
"R-MMU-507775",
"R-BTA-70523",
"R-DDI-507775",
"R-CFA-507749",
"R-HSA-507775",
"R-OSA-507749",
"R-CFA-70523",
"R-ATH-507749",
"R-CFA-70524",
"R-TGU-507775",
"R-ATH-507775",
"R-BTA-70524",
"R-DRE-70523",
"R-XTR-507749",
"R-OSA-70523",
"R-DRE-70524",
"R-BTA-507775",
"R-DRE-507775",
"R-GGA-507775",
"R-HSA-70523",
"R-XTR-70523",
"R-MMU-70523",
"R-TGU-507749",
"R-MMU-507749",
"R-MMU-70524",
"R-ATH-70523",
"R-RNO-70524",
"R-CEL-507749",
"R-DME-507749",
"R-SCE-70524",
"R-SSC-507749",
"R-GGA-507749",
"R-CEL-507775"
],
"rhea":[
"19453",
"19455",
"19456",
"19454"
],
"sabiork":[
"763"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00191"
]
}
},
{
"id":"ALATA_L2",
"name":"Alanine transaminase",
"metabolites":{
"ala__L_c":-1.0,
"pyam5p_c":1.0,
"pydx5p_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0934 or STM2555",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ALATA_L2"
]
},
"annotation":{
"bigg.reaction":[
"ALATA_L2"
],
"metanetx.reaction":[
"MNXR95699"
],
"rhea":[
"30025",
"30026",
"30024",
"30023"
],
"sabiork":[
"10879"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08103"
]
}
},
{
"id":"ALATRS",
"name":"Alanyl-tRNA synthetase",
"metabolites":{
"ala__L_c":-1.0,
"alatrna_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaala_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2827",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"ALATRS"
]
},
"annotation":{
"bigg.reaction":[
"ALATRS"
],
"ec-code":[
"6.1.1.7"
],
"metanetx.reaction":[
"MNXR95701"
],
"reactome.reaction":[
"R-HSA-380177",
"R-HSA-379864"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11112"
]
}
},
{
"id":"ALAabcpp",
"name":"L-alanine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"ala__L_c":1.0,
"ala__L_p":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3560 and STM3561 and STM3563 and STM3567 and STM3562",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ALAabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ALAabcpp"
],
"metanetx.reaction":[
"MNXR95703"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10170",
"rxn08097"
]
}
},
{
"id":"ARBTNtonex",
"name":"Aerobactin transport via ton system (extracellular)",
"metabolites":{
"arbtn_fe3_e":-1.0,
"arbtn_fe3_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"ARBTNtonex"
]
},
"annotation":{
"bigg.reaction":[
"ARBTNtonex"
],
"metanetx.reaction":[
"MNXR95930"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08149"
]
}
},
{
"id":"ARBTNtpp",
"name":"Aerobactin secretion (to periplasm)",
"metabolites":{
"arbtn_c":-1.0,
"arbtn_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ARBTNtpp"
]
},
"annotation":{
"bigg.reaction":[
"ARBTNtpp"
],
"metanetx.reaction":[
"MNXR95931"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08150"
]
}
},
{
"id":"ARBt2rpp",
"name":"L-arabinose transport via proton symport (periplasm)",
"metabolites":{
"arab__L_c":1.0,
"arab__L_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3016",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ARBt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ARBt2rpp"
],
"biocyc":[
"META:TRANS-RXN-10"
],
"metanetx.reaction":[
"MNXR95936"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ARBt3ipp",
"name":"L-arabinose transport via proton antiport (periplasm)",
"metabolites":{
"arab__L_c":-1.0,
"arab__L_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1522",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ARBt3ipp"
]
},
"annotation":{
"bigg.reaction":[
"ARBt3ipp"
],
"biocyc":[
"META:TRANS-RXN-40"
],
"metanetx.reaction":[
"MNXR95937"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ARBtex",
"name":"L-arabinose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"arab__L_e":-1.0,
"arab__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ARBtex"
]
},
"annotation":{
"bigg.reaction":[
"ARBtex"
],
"metanetx.reaction":[
"MNXR95913"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ARGAGMt7pp",
"name":"Arginine/agmatine antiport (periplasm)",
"metabolites":{
"agm_c":-1.0,
"agm_p":1.0,
"arg__L_c":1.0,
"arg__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4294",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ARGAGMt7pp"
]
},
"annotation":{
"bigg.reaction":[
"ARGAGMt7pp"
],
"biocyc":[
"META:RXN0-2162"
],
"metanetx.reaction":[
"MNXR95938"
],
"rhea":[
"29654",
"29653",
"29652",
"29651"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13809",
"rxn08152"
]
}
},
{
"id":"ALAt2pp",
"name":"L-alanine transport in via proton symport (periplasm)",
"metabolites":{
"ala__L_c":1.0,
"ala__L_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4398",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ALAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"ALAt2pp"
],
"biocyc":[
"META:RXN0-5202"
],
"metanetx.reaction":[
"MNXR95704"
],
"rhea":[
"29446",
"29444",
"29445",
"29443"
],
"sabiork":[
"13939#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05496",
"rxn08101"
]
}
},
{
"id":"ALAt4pp",
"name":"L-alanine transport in via sodium symport (periplasm)",
"metabolites":{
"ala__L_c":1.0,
"ala__L_p":-1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0006",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ALAt4pp"
]
},
"annotation":{
"bigg.reaction":[
"ALAt4pp"
],
"biocyc":[
"META:TRANS-RXN-125"
],
"metanetx.reaction":[
"MNXR95692"
],
"rhea":[
"29286",
"29283",
"29285",
"29284"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08102",
"rxn05215"
]
}
},
{
"id":"ARGDC",
"name":"Arginine decarboxylase",
"metabolites":{
"agm_c":1.0,
"arg__L_c":-1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4296 or STM3086",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ARGDC"
]
},
"annotation":{
"bigg.reaction":[
"ARGDC"
],
"biocyc":[
"META:ARGDECARBOX-RXN"
],
"ec-code":[
"4.1.1.19"
],
"kegg.reaction":[
"R00566"
],
"metanetx.reaction":[
"MNXR95940"
],
"reactome.reaction":[
"R-SPO-350598",
"R-XTR-350598",
"R-CFA-350598",
"R-DDI-350598",
"R-GGA-350598",
"R-SSC-350598",
"R-PFA-350598",
"R-TGU-350598",
"R-MMU-350598",
"R-SCE-350598",
"R-OSA-350598",
"R-RNO-350598",
"R-BTA-350598",
"R-ATH-350598",
"R-HSA-350598",
"R-DME-350598",
"R-CEL-350598"
],
"rhea":[
"17641",
"17642",
"17644",
"17643"
],
"sabiork":[
"594"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00405"
]
}
},
{
"id":"AACPS4",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C16:1)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"hdcea_c":-1.0,
"hdeACP_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS4"
]
},
"annotation":{
"bigg.reaction":[
"AACPS4"
],
"metanetx.reaction":[
"MNXR95143"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ARGDCpp",
"name":"Arginine decarboxylase",
"metabolites":{
"agm_p":1.0,
"arg__L_p":-1.0,
"co2_p":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3086",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ARGDCpp"
]
},
"annotation":{
"bigg.reaction":[
"ARGDCpp"
],
"biocyc":[
"META:ARGDECARBOX-RXN"
],
"ec-code":[
"4.1.1.19"
],
"kegg.reaction":[
"R00566"
],
"metanetx.reaction":[
"MNXR95940"
],
"reactome.reaction":[
"R-SPO-350598",
"R-XTR-350598",
"R-CFA-350598",
"R-DDI-350598",
"R-GGA-350598",
"R-SSC-350598",
"R-PFA-350598",
"R-TGU-350598",
"R-MMU-350598",
"R-SCE-350598",
"R-OSA-350598",
"R-RNO-350598",
"R-BTA-350598",
"R-ATH-350598",
"R-HSA-350598",
"R-DME-350598",
"R-CEL-350598"
],
"rhea":[
"17641",
"17642",
"17644",
"17643"
],
"sabiork":[
"594"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00405"
]
}
},
{
"id":"ARGORNt7pp",
"name":"Arginine/ornithine antiporter (periplasm)",
"metabolites":{
"arg__L_c":1.0,
"arg__L_p":-1.0,
"orn_c":-1.0,
"orn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1477",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ARGORNt7pp"
]
},
"annotation":{
"bigg.reaction":[
"ARGORNt7pp"
],
"metanetx.reaction":[
"MNXR95946"
],
"rhea":[
"34994",
"34993",
"34991",
"34992"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08153",
"rxn10131"
]
}
},
{
"id":"ALAtex",
"name":"L-alanine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ala__L_e":-1.0,
"ala__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ALAtex"
]
},
"annotation":{
"bigg.reaction":[
"ALAtex"
],
"metanetx.reaction":[
"MNXR95706"
],
"sabiork":[
"10375"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08104",
"rxn10921",
"rxn13221"
]
}
},
{
"id":"ALDD2y",
"name":"Aldehyde dehydrogenase (acetaldehyde, NADP)",
"metabolites":{
"ac_c":1.0,
"acald_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3680",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ALDD2y"
]
},
"annotation":{
"bigg.reaction":[
"ALDD2y"
],
"biocyc":[
"META:RXN0-3962"
],
"ec-code":[
"1.2.1.4",
"1.2.1.-",
"1.2.1.5"
],
"kegg.reaction":[
"R00711"
],
"metanetx.reaction":[
"MNXR95750"
],
"rhea":[
"25298",
"25300",
"25301",
"25299"
],
"sabiork":[
"541"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00507"
]
}
},
{
"id":"ARGSL",
"name":"Argininosuccinate lyase",
"metabolites":{
"arg__L_c":1.0,
"argsuc_c":-1.0,
"fum_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4123",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ARGSL"
]
},
"annotation":{
"bigg.reaction":[
"ARGSL"
],
"biocyc":[
"META:ARGSUCCINLYA-RXN"
],
"ec-code":[
"4.3.2.1"
],
"kegg.reaction":[
"R01086"
],
"metanetx.reaction":[
"MNXR138059"
],
"reactome.reaction":[
"R-SSC-70573",
"R-OSA-70573",
"R-SCE-70573",
"R-SPO-70573",
"R-GGA-70573",
"R-BTA-70573",
"R-DRE-70573",
"R-HSA-70573",
"R-TGU-70573",
"R-ATH-70573",
"R-XTR-70573",
"R-DME-70573"
],
"rhea":[
"24021",
"24020",
"24022",
"24023"
],
"sabiork":[
"573"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00802"
]
}
},
{
"id":"AACPS5",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C18:1)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdcea_c":-1.0,
"octeACP_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS5"
]
},
"annotation":{
"bigg.reaction":[
"AACPS5"
],
"metanetx.reaction":[
"MNXR95144"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ARGSS",
"name":"Argininosuccinate synthase",
"metabolites":{
"amp_c":1.0,
"argsuc_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0,
"citr__L_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3290_S",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ARGSS"
]
},
"annotation":{
"bigg.reaction":[
"ARGSS"
],
"biocyc":[
"META:ARGSUCCINSYN-RXN"
],
"ec-code":[
"6.3.4.5"
],
"kegg.reaction":[
"R01954"
],
"metanetx.reaction":[
"MNXR138060"
],
"reactome.reaction":[
"R-MMU-70577",
"R-RNO-70577",
"R-GGA-70577",
"R-BTA-70577",
"R-SSC-70577",
"R-CFA-70577",
"R-XTR-70577",
"R-TGU-70577",
"R-HSA-70577"
],
"rhea":[
"10933",
"10935",
"10934",
"10932"
],
"sabiork":[
"572"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01434"
]
}
},
{
"id":"ARGTRS",
"name":"Arginyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"arg__L_c":-1.0,
"argtrna_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaarg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1909",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"ARGTRS"
]
},
"annotation":{
"bigg.reaction":[
"ARGTRS"
],
"ec-code":[
"6.1.1.19"
],
"kegg.reaction":[
"R03646"
],
"metanetx.reaction":[
"MNXR95950"
],
"reactome.reaction":[
"R-HSA-379993",
"R-HSA-380224"
],
"sabiork":[
"407"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06432"
]
}
},
{
"id":"ASNNpp",
"name":"L-asparaginase",
"metabolites":{
"asn__L_p":-1.0,
"asp__L_p":1.0,
"h2o_p":-1.0,
"nh4_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3106",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"ASNNpp"
]
},
"annotation":{
"bigg.reaction":[
"ASNNpp"
],
"biocyc":[
"META:ASPARAGHYD-RXN"
],
"ec-code":[
"3.5.1.38",
"3.5.5.4",
"3.5.1.1"
],
"kegg.reaction":[
"R00485"
],
"metanetx.reaction":[
"MNXR96056"
],
"reactome.reaction":[
"R-DDI-6797627",
"R-BTA-6797627",
"R-DRE-6797627",
"R-XTR-6797627",
"R-RNO-6797627",
"R-SPO-6797627",
"R-MMU-6797627",
"R-GGA-6797627",
"R-HSA-6797627",
"R-TGU-6797627",
"R-CEL-6797627",
"R-DME-6797627",
"R-CFA-6797627"
],
"rhea":[
"21017",
"21019",
"21016",
"21018"
],
"sabiork":[
"917"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00342"
]
}
},
{
"id":"AACPS6",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C18:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocdcaACP_c":1.0,
"ocdca_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS6"
]
},
"annotation":{
"bigg.reaction":[
"AACPS6"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95145"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ASNS1",
"name":"Asparagine synthase (glutamine-hydrolysing)",
"metabolites":{
"amp_c":1.0,
"asn__L_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0680",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"ASNS1"
]
},
"annotation":{
"bigg.reaction":[
"ASNS1"
],
"biocyc":[
"META:ASNSYNB-RXN"
],
"ec-code":[
"6.3.5.4"
],
"kegg.reaction":[
"R00578"
],
"metanetx.reaction":[
"MNXR96059"
],
"reactome.reaction":[
"R-GGA-70599",
"R-BTA-70599",
"R-SPO-70599",
"R-PFA-70599",
"R-RNO-70599",
"R-MMU-70599",
"R-HSA-70599",
"R-SCE-70599",
"R-TGU-70599",
"R-DDI-70599",
"R-XTR-70599",
"R-ATH-70599",
"R-SSC-70599",
"R-DRE-70599",
"R-CFA-70599",
"R-OSA-70599"
],
"rhea":[
"12231",
"12229",
"12230",
"12228"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00416",
"rxn11214"
]
}
},
{
"id":"ARGabcpp",
"name":"L-arginine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"arg__L_c":1.0,
"arg__L_p":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2355 and STM2352 and STM2351 and STM2353) or (STM0890 and STM0887 and STM0888 and STM0891 and STM0889)",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ARGabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ARGabcpp"
],
"biocyc":[
"META:ABC-4-RXN"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR95952"
],
"rhea":[
"29880#1",
"29882#1",
"29881#1",
"29879#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08151",
"rxn11236",
"rxn05154"
]
}
},
{
"id":"ARGt3pp",
"name":"L-arginine transport out via proton antiport (cytoplasm to periplasm)",
"metabolites":{
"arg__L_c":-1.0,
"arg__L_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3066",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ARGt3pp"
]
},
"annotation":{
"bigg.reaction":[
"ARGt3pp"
],
"metanetx.reaction":[
"MNXR95954"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13228",
"rxn08154"
]
}
},
{
"id":"ASNS2",
"name":"Asparagine synthetase",
"metabolites":{
"amp_c":1.0,
"asn__L_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"nh4_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3877",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"ASNS2"
]
},
"annotation":{
"bigg.reaction":[
"ASNS2"
],
"biocyc":[
"META:ASNSYNA-RXN"
],
"ec-code":[
"6.3.1.1",
"6.3.5.4"
],
"kegg.reaction":[
"R00483"
],
"metanetx.reaction":[
"MNXR96060"
],
"rhea":[
"11372",
"11375",
"11374",
"11373"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00340"
]
}
},
{
"id":"AACPS7",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C12:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ddcaACP_c":1.0,
"ddca_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS7"
]
},
"annotation":{
"bigg.reaction":[
"AACPS7"
],
"ec-code":[
"6.2.1.l"
],
"metanetx.reaction":[
"MNXR95146"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ARGtex",
"name":"L-arginine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"arg__L_e":-1.0,
"arg__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ARGtex"
]
},
"annotation":{
"bigg.reaction":[
"ARGtex"
],
"biocyc":[
"META:RXN66-448"
],
"metanetx.reaction":[
"MNXR95951"
],
"rhea":[
"32145",
"32143",
"32144",
"32146"
],
"sabiork":[
"7983"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10840",
"rxn08155"
]
}
},
{
"id":"ASAD",
"name":"Aspartate-semialdehyde dehydrogenase",
"metabolites":{
"4pasp_c":1.0,
"aspsa_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3539",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"ASAD"
]
},
"annotation":{
"bigg.reaction":[
"ASAD"
],
"biocyc":[
"META:ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.2.1.11"
],
"kegg.reaction":[
"R02291"
],
"metanetx.reaction":[
"MNXR96039"
],
"rhea":[
"24285",
"24284",
"24286",
"24287"
],
"sabiork":[
"2255"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01643"
]
}
},
{
"id":"AACPS8",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C10:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"dcaACP_c":1.0,
"dca_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS8"
]
},
"annotation":{
"bigg.reaction":[
"AACPS8"
],
"ec-code":[
"6.2.1.20"
],
"metanetx.reaction":[
"MNXR95147"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ASCBPL",
"name":"L-ascorbate 6-phosphate lactonase",
"metabolites":{
"3dhgulnp_c":1.0,
"ascb6p_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4382",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ASCBPL"
]
},
"annotation":{
"bigg.reaction":[
"ASCBPL"
],
"biocyc":[
"META:RXN0-5214"
],
"ec-code":[
"3.1.1.-",
"3.1.1"
],
"kegg.reaction":[
"R07677"
],
"metanetx.reaction":[
"MNXR138067"
],
"rhea":[
"28803",
"28804",
"28805",
"28806"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07492"
]
}
},
{
"id":"ASCBptspp",
"name":"L-ascorbate transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"ascb6p_c":1.0,
"ascb__L_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2431 and STM2432 and STM4385 and STM4384 and STM4383_S",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASCBptspp"
]
},
"annotation":{
"bigg.reaction":[
"ASCBptspp"
],
"metanetx.reaction":[
"MNXR138069"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08158",
"rxn13758"
]
}
},
{
"id":"ASCBtex",
"name":"L-ascorbate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ascb__L_e":-1.0,
"ascb__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ASCBtex"
]
},
"annotation":{
"bigg.reaction":[
"ASCBtex"
],
"metanetx.reaction":[
"MNXR138070"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08159"
]
}
},
{
"id":"AACPS9",
"name":"Acyl-[acyl-carrier-protein] synthetase  (n-C8:0)",
"metabolites":{
"ACP_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"ocACP_c":1.0,
"octa_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3010 and STM1196",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"AACPS9"
]
},
"annotation":{
"bigg.reaction":[
"AACPS9"
],
"ec-code":[
"6.2.1.l"
],
"metanetx.reaction":[
"MNXR95148"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ASNN",
"name":"L-asparaginase",
"metabolites":{
"asn__L_c":-1.0,
"asp__L_c":1.0,
"h2o_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1294 or STM0847 or STM3598",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"ASNN"
]
},
"annotation":{
"bigg.reaction":[
"ASNN"
],
"biocyc":[
"META:ASPARAGHYD-RXN"
],
"ec-code":[
"3.5.1.38",
"3.5.5.4",
"3.5.1.1"
],
"kegg.reaction":[
"R00485"
],
"metanetx.reaction":[
"MNXR96056"
],
"reactome.reaction":[
"R-DDI-6797627",
"R-BTA-6797627",
"R-DRE-6797627",
"R-XTR-6797627",
"R-RNO-6797627",
"R-SPO-6797627",
"R-MMU-6797627",
"R-GGA-6797627",
"R-HSA-6797627",
"R-TGU-6797627",
"R-CEL-6797627",
"R-DME-6797627",
"R-CFA-6797627"
],
"rhea":[
"21017",
"21019",
"21016",
"21018"
],
"sabiork":[
"917"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00342"
]
}
},
{
"id":"AACTOOR",
"name":"Aminoacetone:oxygen oxidoreductase(deaminating)(flavin-containing)",
"metabolites":{
"aact_c":-1.0,
"h2o2_c":1.0,
"h2o_c":-1.0,
"mthgxl_c":1.0,
"nh4_c":1.0,
"o2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Methylglyoxal Metabolism",
"notes":{
"original_bigg_ids":[
"AACTOOR"
]
},
"annotation":{
"bigg.reaction":[
"AACTOOR"
],
"biocyc":[
"META:AMACETOXID-RXN"
],
"ec-code":[
"1.4.3.4",
"1.4.3.21",
"1.4.3.6"
],
"kegg.reaction":[
"R02529"
],
"metanetx.reaction":[
"MNXR95149"
],
"rhea":[
"28187",
"28189",
"28186",
"28188"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01833"
]
}
},
{
"id":"AAMYL",
"name":"Alpha-amylase",
"metabolites":{
"14glucan_c":-1.0,
"malthx_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1963",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AAMYL"
]
},
"annotation":{
"bigg.reaction":[
"AAMYL"
],
"metanetx.reaction":[
"MNXR95153"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ASNTRS_1",
"name":"Asparaginyl tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"asn__L_c":-1.0,
"asntrna_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"ppi_c":1.0,
"trnaasn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1000",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"ASNTRS"
]
},
"annotation":{
"bigg.reaction":[
"ASNTRS_1"
],
"ec-code":[
"6.1.1.22"
],
"kegg.reaction":[
"R03648"
],
"metanetx.reaction":[
"MNXR96064"
],
"reactome.reaction":[
"R-HSA-380227",
"R-HSA-379996"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11114",
"rxn06434"
]
}
},
{
"id":"AAMYLpp",
"name":"Alpha-amylase (periplasm)",
"metabolites":{
"14glucan_p":-1.0,
"malthx_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3664",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AAMYLpp"
]
},
"annotation":{
"bigg.reaction":[
"AAMYLpp"
],
"metanetx.reaction":[
"MNXR95153"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ASNabcpp",
"name":"L-asparagine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"asn__L_c":1.0,
"asn__L_p":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ASNabcpp"
],
"metanetx.reaction":[
"MNXR96065"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08160",
"rxn10144"
]
}
},
{
"id":"ABTA",
"name":"4-aminobutyrate transaminase",
"metabolites":{
"4abut_c":-1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"sucsal_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2792",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ABTA"
]
},
"annotation":{
"bigg.reaction":[
"ABTA"
],
"biocyc":[
"META:GABATRANSAM-RXN"
],
"ec-code":[
"2.6.1.19"
],
"kegg.reaction":[
"R01648"
],
"metanetx.reaction":[
"MNXR95186"
],
"rhea":[
"23353",
"23352",
"23354",
"23355"
],
"sabiork":[
"1785"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01204"
]
}
},
{
"id":"ASNt2rpp",
"name":"L-asparagine reversible transport via proton symport (periplasm)",
"metabolites":{
"asn__L_c":1.0,
"asn__L_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1584",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ASNt2rpp"
],
"biocyc":[
"META:TRANS-RXN-262"
],
"metanetx.reaction":[
"MNXR96066"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09782",
"rxn05508",
"rxn08161",
"rxn11321",
"rxn13230"
]
}
},
{
"id":"ABUTD",
"name":"Aminobutyraldehyde dehydrogenase",
"metabolites":{
"4abut_c":1.0,
"4abutn_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1597",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ABUTD"
]
},
"annotation":{
"bigg.reaction":[
"ABUTD"
],
"biocyc":[
"META:AMINOBUTDEHYDROG-RXN"
],
"ec-code":[
"1.2.1.19",
"1.2.1.3",
"1.2.1.-"
],
"kegg.reaction":[
"R02549"
],
"metanetx.reaction":[
"MNXR95191"
],
"rhea":[
"19108",
"19105",
"19107",
"19106"
],
"sabiork":[
"2464"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01851"
]
}
},
{
"id":"ASNtex",
"name":"L-asparagine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"asn__L_e":-1.0,
"asn__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ASNtex"
]
},
"annotation":{
"bigg.reaction":[
"ASNtex"
],
"metanetx.reaction":[
"MNXR96069"
],
"sabiork":[
"13466"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05220",
"rxn08162"
]
}
},
{
"id":"ASO3tex",
"name":"Arsenite transport via diffusion (extracellular to periplasm)",
"metabolites":{
"aso3_e":-1.0,
"aso3_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ASO3tex"
]
},
"annotation":{
"bigg.reaction":[
"ASO3tex"
],
"biocyc":[
"META:TRANS-RXN0-551"
],
"metanetx.reaction":[
"MNXR96073"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05507",
"rxn08164"
]
}
},
{
"id":"ABUTt2pp",
"name":"4-aminobutyrate transport in via proton symport (periplasm)",
"metabolites":{
"4abut_c":1.0,
"4abut_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2793",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ABUTt2pp"
]
},
"annotation":{
"bigg.reaction":[
"ABUTt2pp"
],
"biocyc":[
"META:TRANS-RXN-57"
],
"metanetx.reaction":[
"MNXR94994"
],
"rhea":[
"28916",
"28917",
"28918",
"28915"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08027",
"rxn05564"
]
}
},
{
"id":"ASP1DC",
"name":"Aspartate 1-decarboxylase",
"metabolites":{
"ala_B_c":1.0,
"asp__L_c":-1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0180",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ASP1DC"
]
},
"annotation":{
"bigg.reaction":[
"ASP1DC"
],
"biocyc":[
"META:ASPDECARBOX-RXN"
],
"ec-code":[
"4.1.1.15",
"4.1.1.11"
],
"kegg.reaction":[
"R00489"
],
"metanetx.reaction":[
"MNXR96077"
],
"rhea":[
"19500",
"19499",
"19498",
"19497"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00346"
]
}
},
{
"id":"CRNDCAL2",
"name":"D-Carnitine-CoA Ligase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"crnDcoa_c":1.0,
"crn__D_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0071",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CRNDCAL2"
]
},
"annotation":{
"bigg.reaction":[
"CRNDCAL2"
],
"metanetx.reaction":[
"MNXR96901"
],
"rhea":[
"30544",
"30543",
"30546",
"30545"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08260"
]
}
},
{
"id":"ASPCT",
"name":"Aspartate carbamoyltransferase",
"metabolites":{
"asp__L_c":-1.0,
"cbasp_c":1.0,
"cbp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4459 and STM4460",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"ASPCT"
]
},
"annotation":{
"bigg.reaction":[
"ASPCT"
],
"biocyc":[
"META:ASPCARBTRANS-RXN"
],
"ec-code":[
"2.1.3.2"
],
"kegg.reaction":[
"R01397"
],
"metanetx.reaction":[
"MNXR96080"
],
"reactome.reaction":[
"R-DDI-73573",
"R-RNO-73573",
"R-SPO-73573",
"R-DRE-73573",
"R-DME-73573",
"R-SCE-73573",
"R-CEL-73573",
"R-GGA-73573",
"R-SSC-73573",
"R-CFA-73573",
"R-ATH-73573",
"R-GGA-419451",
"R-MMU-73573",
"R-PFA-73573",
"R-BTA-73573",
"R-OSA-73573",
"R-HSA-73573",
"R-TGU-73573",
"R-XTR-73573"
],
"rhea":[
"20015",
"20014",
"20016",
"20013"
],
"sabiork":[
"398"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01018"
]
}
},
{
"id":"ASPK",
"name":"Aspartate kinase",
"metabolites":{
"4pasp_c":1.0,
"adp_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0002 or STM4101 or STM4220",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"ASPK"
]
},
"annotation":{
"bigg.reaction":[
"ASPK"
],
"biocyc":[
"META:ASPARTATEKIN-RXN"
],
"ec-code":[
"2.7.2.4"
],
"kegg.reaction":[
"R00480"
],
"metanetx.reaction":[
"MNXR96085"
],
"rhea":[
"23779",
"23777",
"23776",
"23778"
],
"sabiork":[
"912"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00337"
]
}
},
{
"id":"ASPO3",
"name":"L-aspartate oxidase",
"metabolites":{
"asp__L_c":-1.0,
"h_c":1.0,
"iasp_c":1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2641",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ASPO3"
]
},
"annotation":{
"bigg.reaction":[
"ASPO3"
],
"metanetx.reaction":[
"MNXR96091"
],
"rhea":[
"28685",
"28686",
"28683",
"28684"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08166"
]
}
},
{
"id":"ASPO4",
"name":"L-aspartate oxidase",
"metabolites":{
"asp__L_c":-1.0,
"h_c":1.0,
"iasp_c":1.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2641",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ASPO4"
]
},
"annotation":{
"bigg.reaction":[
"ASPO4"
],
"metanetx.reaction":[
"MNXR96092"
],
"rhea":[
"29192",
"29193",
"29191",
"29194"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08167"
]
}
},
{
"id":"ASPO5",
"name":"L-aspartate oxidase",
"metabolites":{
"asp__L_c":-1.0,
"fum_c":-1.0,
"h_c":1.0,
"iasp_c":1.0,
"succ_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2641",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ASPO5"
]
},
"annotation":{
"bigg.reaction":[
"ASPO5"
],
"biocyc":[
"META:RXN-9772"
],
"ec-code":[
"1.5.99"
],
"metanetx.reaction":[
"MNXR96093"
],
"rhea":[
"30043",
"30045",
"30044",
"30046"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08168"
]
}
},
{
"id":"ASPO6",
"name":"L-aspartate oxidase",
"metabolites":{
"asp__L_c":-1.0,
"h2o2_c":1.0,
"h_c":1.0,
"iasp_c":1.0,
"o2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2641",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ASPO6"
]
},
"annotation":{
"bigg.reaction":[
"ASPO6"
],
"biocyc":[
"META:L-ASPARTATE-OXID-RXN"
],
"ec-code":[
"1.4.3.16"
],
"kegg.reaction":[
"R00481"
],
"metanetx.reaction":[
"MNXR96094"
],
"rhea":[
"25879",
"25878",
"25877",
"25876"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00338"
]
}
},
{
"id":"CDPMEK",
"name":"4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase",
"metabolites":{
"2p4c2me_c":1.0,
"4c2me_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1779",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CDPMEK"
]
},
"annotation":{
"bigg.reaction":[
"CDPMEK"
],
"biocyc":[
"META:2.7.1.148-RXN"
],
"ec-code":[
"2.7.1.148"
],
"kegg.reaction":[
"R05634"
],
"metanetx.reaction":[
"MNXR96558"
],
"rhea":[
"18437",
"18440",
"18438",
"18439"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03908"
]
}
},
{
"id":"CFAS160E",
"name":"Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C16:0)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"cpe160_c":1.0,
"h_c":2.0,
"pe161_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1427",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CFAS160E"
]
},
"annotation":{
"bigg.reaction":[
"CFAS160E"
],
"ec-code":[
"2.1.1.79"
],
"metanetx.reaction":[
"MNXR96652"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CFAS160G",
"name":"Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C16:0)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"cpg160_c":1.0,
"h_c":2.0,
"pg161_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1427",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CFAS160G"
]
},
"annotation":{
"bigg.reaction":[
"CFAS160G"
],
"ec-code":[
"2.1.1.79"
],
"metanetx.reaction":[
"MNXR96653"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08207"
]
}
},
{
"id":"CFAS180E",
"name":"Cyclopropane fatty acid synthase (Phosphatidylethanolamine, n-C18:0)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"cpe180_c":1.0,
"h_c":2.0,
"pe181_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1427",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CFAS180E"
]
},
"annotation":{
"bigg.reaction":[
"CFAS180E"
],
"ec-code":[
"2.1.1.79"
],
"metanetx.reaction":[
"MNXR96654"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CRNDabcpp",
"name":"D-carnitine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"crn__D_c":1.0,
"crn__D_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2809 and STM2810 and STM2811",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRNDabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CRNDabcpp"
],
"metanetx.reaction":[
"MNXR96902"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08259"
]
}
},
{
"id":"CFAS180G",
"name":"Cyclopropane fatty acid synthase (Phosphatidylglycerol, n-C18:0)",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"cpg180_c":1.0,
"h_c":2.0,
"pg181_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1427",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CFAS180G"
]
},
"annotation":{
"bigg.reaction":[
"CFAS180G"
],
"ec-code":[
"2.1.1.79"
],
"metanetx.reaction":[
"MNXR96655"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CGLYabcpp",
"name":"L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cgly_c":1.0,
"cgly_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3630 and STM3629 and STM3628 and STM3627 and STM3626",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CGLYabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CGLYabcpp"
],
"metanetx.reaction":[
"MNXR96656"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05539",
"rxn08210"
]
}
},
{
"id":"ASPT",
"name":"L-aspartase",
"metabolites":{
"asp__L_c":-1.0,
"fum_c":1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4326",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"ASPT"
]
},
"annotation":{
"bigg.reaction":[
"ASPT"
],
"biocyc":[
"META:ASPARTASE-RXN"
],
"ec-code":[
"4.3.1.1"
],
"kegg.reaction":[
"R00490"
],
"metanetx.reaction":[
"MNXR96099"
],
"rhea":[
"16603",
"16604",
"16602",
"16601"
],
"sabiork":[
"922"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00347"
]
}
},
{
"id":"ASPTA",
"name":"Aspartate transaminase",
"metabolites":{
"akg_c":-1.0,
"asp__L_c":-1.0,
"glu__L_c":1.0,
"oaa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0998",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"ASPTA"
]
},
"annotation":{
"bigg.reaction":[
"ASPTA"
],
"biocyc":[
"META:RXN-13697",
"META:ASPAMINOTRANS-RXN"
],
"ec-code":[
"2.6.1.1"
],
"kegg.reaction":[
"R00355"
],
"metanetx.reaction":[
"MNXR96079"
],
"reactome.reaction":[
"R-DME-70613",
"R-XTR-70581",
"R-CEL-70613",
"R-OSA-70613",
"R-BTA-70613",
"R-DDI-70613",
"R-DRE-70581",
"R-DRE-70613",
"R-SCE-70592",
"R-SPO-70596",
"R-SPO-70581",
"R-GGA-70592",
"R-HSA-70613",
"R-HSA-70592",
"R-DRE-70592",
"R-XTR-70592",
"R-DME-70592",
"R-CFA-70613",
"R-HSA-70596",
"R-PFA-70596",
"R-CEL-70592",
"R-CEL-70581",
"R-MMU-70596",
"R-MMU-70613",
"R-DRE-70596",
"R-ATH-70596",
"R-OSA-70596",
"R-ATH-70613",
"R-PFA-70613",
"R-TGU-70596",
"R-RNO-70581",
"R-TGU-70613",
"R-DME-70596",
"R-CFA-70596",
"R-SCE-70613",
"R-TGU-70581",
"R-SCE-70581",
"R-DME-70581",
"R-SPO-70613",
"R-SSC-70596",
"R-BTA-70592",
"R-XTR-70596",
"R-RNO-70613",
"R-XTR-70613",
"R-GGA-372717",
"R-CFA-70581",
"R-MMU-70592",
"R-PFA-70592",
"R-SSC-70592",
"R-BTA-70581",
"R-SPO-70592",
"R-DDI-70596",
"R-SSC-70613",
"R-CEL-70596",
"R-SSC-70581",
"R-RNO-70596",
"R-SCE-70596",
"R-GGA-70596",
"R-GGA-372559",
"R-CFA-70592",
"R-BTA-70596",
"R-PFA-70581",
"R-MMU-70581",
"R-RNO-70592",
"R-GGA-70613",
"R-HSA-70581",
"R-GGA-372564",
"R-GGA-70581",
"R-TGU-70592",
"R-GGA-372719"
],
"rhea":[
"21824",
"21827",
"21825",
"21826"
],
"sabiork":[
"825"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00260"
]
}
},
{
"id":"CGLYtex",
"name":"L-Cysteinylglycine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cgly_e":-1.0,
"cgly_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CGLYtex"
]
},
"annotation":{
"bigg.reaction":[
"CGLYtex"
],
"metanetx.reaction":[
"MNXR96658"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08211"
]
}
},
{
"id":"CHLabcpp",
"name":"Choline transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"chol_c":1.0,
"chol_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2162 and STM2163 and STM2164 and STM2165",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CHLabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CHLabcpp"
],
"metanetx.reaction":[
"MNXR96691"
],
"rhea":[
"38715#1",
"38718#1",
"38717#1",
"38716#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05159",
"rxn08212"
]
}
},
{
"id":"CHLtex",
"name":"Choline transport via diffusion (extracellular to periplasm)",
"metabolites":{
"chol_e":-1.0,
"chol_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CHLtex"
]
},
"annotation":{
"bigg.reaction":[
"CHLtex"
],
"biocyc":[
"META:TRANS-RXN-319"
],
"metanetx.reaction":[
"MNXR96693"
],
"reactome.reaction":[
"R-GGA-6797956",
"R-DDI-6797956",
"R-XTR-444433",
"R-CFA-6797956",
"R-SSC-6797956",
"R-HSA-444433",
"R-OSA-444433",
"R-MMU-6797956",
"R-DME-444433",
"R-GGA-444433",
"R-MMU-444433",
"R-DDI-444433",
"R-SCE-444433",
"R-SSC-444433",
"R-TGU-6797956",
"R-OSA-6797956",
"R-DME-6797956",
"R-ATH-444433",
"R-HSA-6797956",
"R-XTR-6797956",
"R-ATH-6797956",
"R-CEL-444433",
"R-BTA-444433",
"R-RNO-6797956",
"R-SCE-6797956",
"R-RNO-444433",
"R-BTA-6797956",
"R-TGU-444433",
"R-DRE-444433",
"R-CFA-444433",
"R-DRE-6797956"
],
"rhea":[
"32753",
"32754",
"32752",
"32751"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08214"
]
}
},
{
"id":"ASPTRS",
"name":"Aspartyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"asp__L_c":-1.0,
"asptrna_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaasp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1901",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"ASPTRS"
]
},
"annotation":{
"bigg.reaction":[
"ASPTRS"
],
"ec-code":[
"6.1.1.12",
"6.1.1.23"
],
"kegg.reaction":[
"R05577"
],
"metanetx.reaction":[
"MNXR96101"
],
"sabiork":[
"402"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06936"
]
}
},
{
"id":"ASPabcpp",
"name":"L-aspartate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"asp__L_c":1.0,
"asp__L_p":-1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0665 and STM0664 and STM0663 and STM0662",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASPabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ASPabcpp"
],
"biocyc":[
"META:TRANS-RXN0-222"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR96103"
],
"rhea":[
"29039#1",
"29040#1",
"29041#1",
"29042#1"
],
"sabiork":[
"13284#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05152",
"rxn08165"
]
}
},
{
"id":"ASPt2_2pp",
"name":"Aspartate transport via proton symport (2 H) (periplasm)",
"metabolites":{
"asp__L_c":1.0,
"asp__L_p":-1.0,
"h_c":2.0,
"h_p":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3614",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASPt2_2pp"
]
},
"annotation":{
"bigg.reaction":[
"ASPt2_2pp"
],
"biocyc":[
"META:TRANS-RXN-122A"
],
"metanetx.reaction":[
"MNXR96104"
],
"rhea":[
"29288",
"29289",
"29287",
"29290"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08169",
"rxn10151"
]
}
},
{
"id":"ASPt2pp",
"name":"L-aspartate transport in via proton symport (periplasm)",
"metabolites":{
"asp__L_c":1.0,
"asp__L_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4283",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASPt2pp"
]
},
"annotation":{
"bigg.reaction":[
"ASPt2pp"
],
"metanetx.reaction":[
"MNXR96106"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09781",
"rxn05217",
"rxn09825",
"rxn13233"
]
}
},
{
"id":"CHORS",
"name":"Chorismate synthase",
"metabolites":{
"3psme_c":-1.0,
"chor_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2384",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"CHORS"
]
},
"annotation":{
"bigg.reaction":[
"CHORS"
],
"biocyc":[
"META:CHORISMATE-SYNTHASE-RXN"
],
"ec-code":[
"4.2.3.5"
],
"kegg.reaction":[
"R01714"
],
"metanetx.reaction":[
"MNXR96709"
],
"rhea":[
"21020",
"21023",
"21022",
"21021"
],
"sabiork":[
"1826"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01255"
]
}
},
{
"id":"CHRPL",
"name":"Chorismate pyruvate lyase",
"metabolites":{
"4hbz_c":1.0,
"chor_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4233",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CHRPL"
]
},
"annotation":{
"bigg.reaction":[
"CHRPL"
],
"biocyc":[
"META:CHORPYRLY-RXN"
],
"ec-code":[
"4.1.3.40"
],
"kegg.reaction":[
"R01302"
],
"metanetx.reaction":[
"MNXR96711"
],
"rhea":[
"16508",
"16505",
"16507",
"16506"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00966"
]
}
},
{
"id":"ASPtex",
"name":"L-aspartate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"asp__L_e":-1.0,
"asp__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ASPtex"
]
},
"annotation":{
"bigg.reaction":[
"ASPtex"
],
"biocyc":[
"META:TRANS-RXN0-554"
],
"metanetx.reaction":[
"MNXR96107"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10906",
"rxn08170",
"rxn13232"
]
}
},
{
"id":"AST",
"name":"Arginine succinyltransferase",
"metabolites":{
"arg__L_c":-1.0,
"coa_c":1.0,
"h_c":1.0,
"sucarg_c":1.0,
"succoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1304",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"AST"
]
},
"annotation":{
"bigg.reaction":[
"AST"
],
"biocyc":[
"META:ARGININE-N-SUCCINYLTRANSFERASE-RXN"
],
"ec-code":[
"2.3.1.109"
],
"kegg.reaction":[
"R00832"
],
"metanetx.reaction":[
"MNXR96115"
],
"rhea":[
"15185",
"15187",
"15186",
"15188"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00601"
]
}
},
{
"id":"CITL",
"name":"Citrate lyase",
"metabolites":{
"ac_c":1.0,
"cit_c":-1.0,
"oaa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"((STM0621 and STM0622 and STM0623) or (STM0059 and STM0060 and STM0061)) and STM0620",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"CITL"
]
},
"annotation":{
"bigg.reaction":[
"CITL"
],
"biocyc":[
"META:CITLY-RXN"
],
"ec-code":[
"4.1.3.6"
],
"kegg.reaction":[
"R00362"
],
"metanetx.reaction":[
"MNXR96731"
],
"rhea":[
"10763",
"10762",
"10761",
"10760"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00265"
]
}
},
{
"id":"CRNDt2rpp",
"name":"D-carnitine outward transport (H+ antiport)",
"metabolites":{
"crn__D_c":1.0,
"crn__D_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4290",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRNDt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"CRNDt2rpp"
],
"metanetx.reaction":[
"MNXR96903"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08261"
]
}
},
{
"id":"CITt7pp",
"name":"Citrate transport via succinate antiport (periplasm)",
"metabolites":{
"cit_c":1.0,
"cit_p":-1.0,
"succ_c":-1.0,
"succ_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0618",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CITt7pp"
]
},
"annotation":{
"bigg.reaction":[
"CITt7pp"
],
"biocyc":[
"META:TRANS-RXN0-201"
],
"metanetx.reaction":[
"MNXR96752"
],
"rhea":[
"28837",
"28836",
"28838",
"28835"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08216",
"rxn10150"
]
}
},
{
"id":"CITtex",
"name":"Citrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cit_e":-1.0,
"cit_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CITtex"
]
},
"annotation":{
"bigg.reaction":[
"CITtex"
],
"metanetx.reaction":[
"MNXR96756"
],
"rhea":[
"33184",
"33186",
"33183",
"33185"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10946",
"rxn08217"
]
}
},
{
"id":"ATHRDHr",
"name":"L-allo-threonine dehydrogenase",
"metabolites":{
"2aobut_c":1.0,
"athr__L_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1511",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"ATHRDHr"
]
},
"annotation":{
"bigg.reaction":[
"ATHRDHr"
],
"biocyc":[
"META:RXN-16000"
],
"ec-code":[
"1.1.1.381"
],
"kegg.reaction":[
"R10851"
],
"metanetx.reaction":[
"MNXR96121"
],
"rhea":[
"30057",
"30058",
"30056",
"30055"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08172"
]
}
},
{
"id":"ATPHs",
"name":"ATP amine hydrolysis (spontaneous)",
"metabolites":{
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"itp_c":1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"ATPHs"
]
},
"annotation":{
"bigg.reaction":[
"ATPHs"
],
"biocyc":[
"META:ATP-DEAMINASE-RXN"
],
"ec-code":[
"3.5.4.17",
"3.5.4.18"
],
"kegg.reaction":[
"R00088"
],
"metanetx.reaction":[
"MNXR96130"
],
"rhea":[
"13038",
"13040",
"13039",
"13037"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00064"
]
}
},
{
"id":"ATPM",
"name":"ATP maintenance requirement",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":8.39,
"upper_bound":8.39,
"gene_reaction_rule":"",
"subsystem":"Biomass and maintenance functions",
"notes":{
"original_bigg_ids":[
"ATPM"
]
},
"annotation":{
"bigg.reaction":[
"ATPM"
],
"biocyc":[
"META:ATPASE-RXN"
],
"ec-code":[
"3.6.1.5",
"3.6.3.34",
"3.6.3.20",
"3.6.3.53",
"3.6.3.8",
"3.6.3.32",
"3.6.4.12",
"3.6.3.48",
"3.6.3.40",
"3.6.3.9",
"3.6.3.23",
"3.6.3.22",
"3.6.3.54",
"3.6.3.1",
"3.6.1.8",
"3.6.3.29",
"3.6.3.17",
"3.6.3.50",
"3.6.3.39",
"3.6.3.19",
"3.6.3.4",
"3.6.3.35",
"3.6.3.16",
"3.6.4.4",
"3.6.3.37",
"3.6.4.8",
"3.6.3.31",
"3.6.3.6",
"3.6.4.5",
"3.6.3.52",
"3.6.3.2",
"3.6.3.14",
"3.6.3.51",
"3.6.3.25",
"3.6.3.38",
"3.6.3.33",
"3.6.3.43",
"3.6.4.10",
"3.6.4.13",
"3.6.3.3",
"3.6.3.10",
"3.6.3.24",
"3.6.3.44",
"3.6.3.15",
"3.6.3.5",
"3.6.1.3",
"3.6.1.15",
"3.6.4.2",
"3.6.4.3",
"3.6.3.42",
"3.6.3.11",
"3.6.3.28",
"3.6.3.30",
"3.6.4.1",
"3.6.4.11",
"3.6.3.47",
"3.6.4.6",
"3.6.3.36",
"3.6.3.21",
"3.6.3.12",
"3.6.3.18",
"3.6.3.26",
"3.6.3.27",
"3.6.3.7",
"3.6.4.9",
"3.6.4.7",
"3.6.3.46",
"3.6.3.41",
"3.6.3.49"
],
"kegg.reaction":[
"R00086"
],
"metanetx.reaction":[
"MNXR96131"
],
"rhea":[
"13066",
"13065",
"13068",
"13067"
],
"sabiork":[
"75"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11300",
"rxn09694",
"rxn00062"
]
}
},
{
"id":"CRNabcpp",
"name":"L-carnitine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"crn_c":1.0,
"crn_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2809 and STM2810 and STM2811",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CRNabcpp"
],
"metanetx.reaction":[
"MNXR96905"
],
"rhea":[
"38719#1",
"38722#1",
"38720#1",
"38721#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05180",
"rxn08253"
]
}
},
{
"id":"ATPPRT",
"name":"ATP phosphoribosyltransferase",
"metabolites":{
"atp_c":-1.0,
"ppi_c":1.0,
"prbatp_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2071",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"ATPPRT"
]
},
"annotation":{
"bigg.reaction":[
"ATPPRT"
],
"biocyc":[
"META:ATPPHOSPHORIBOSYLTRANS-RXN"
],
"ec-code":[
"2.4.2.17"
],
"kegg.reaction":[
"R01071"
],
"metanetx.reaction":[
"MNXR96132"
],
"rhea":[
"18476",
"18475",
"18473",
"18474"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00789"
]
}
},
{
"id":"CRNt2rpp",
"name":"L-carnitine outward transport (H+ antiport)",
"metabolites":{
"crn_c":1.0,
"crn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4290",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"CRNt2rpp"
],
"metanetx.reaction":[
"MNXR96907"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08262",
"rxn12605"
]
}
},
{
"id":"ATPS4rpp",
"name":"ATP synthase (four protons for one ATP) (periplasm)",
"metabolites":{
"adp_c":-1.0,
"atp_c":1.0,
"h2o_c":1.0,
"h_c":3.0,
"h_p":-4.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"((STM3869 and STM3870 and STM3871) and (STM3864 and STM3865 and STM3866 and STM3867 and STM3868)) or ((STM3869 and STM3870 and STM3871) and (STM3864 and STM3865 and STM3866 and STM3867 and STM3868) and STM3872)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"ATPS4rpp"
]
},
"annotation":{
"bigg.reaction":[
"ATPS4rpp"
],
"biocyc":[
"META:ATPSYN-RXN"
],
"ec-code":[
"3.6.3.14"
],
"metanetx.reaction":[
"MNXR96136"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08173",
"rxn10042"
]
}
},
{
"id":"ICITtex",
"name":"Citrate transport via diffusion extracellular to periplasm ",
"metabolites":{
"icit_e":-1.0,
"icit_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ICITtex"
]
},
"annotation":{
"bigg.reaction":[
"ICITtex"
],
"metanetx.reaction":[
"MNXR100788"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12803"
]
}
},
{
"id":"CRNt7pp",
"name":"Carnitine/butyrobetaine antiporter (periplasm)",
"metabolites":{
"crn_c":1.0,
"crn_p":-1.0,
"gbbtn_c":-1.0,
"gbbtn_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0074",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRNt7pp"
]
},
"annotation":{
"bigg.reaction":[
"CRNt7pp"
],
"biocyc":[
"META:TRANS-RXN-100"
],
"metanetx.reaction":[
"MNXR96908"
],
"rhea":[
"29427",
"29430",
"29429",
"29428"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08263",
"rxn10149"
]
}
},
{
"id":"ACONCtex",
"name":"Cisaconitat transport via diffusion extracellular to periplasm ",
"metabolites":{
"acon_C_e":-1.0,
"acon_C_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ACONCtex"
]
},
"annotation":{
"bigg.reaction":[
"ACONCtex"
],
"metanetx.reaction":[
"MNXR95381"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12788"
]
}
},
{
"id":"BALAt2pp",
"name":"Beta-alanine transport in via proton symport (periplasm)",
"metabolites":{
"ala_B_c":1.0,
"ala_B_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4398",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"BALAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"BALAt2pp"
],
"biocyc":[
"META:RXN0-5201"
],
"metanetx.reaction":[
"MNXR96212"
],
"rhea":[
"29460",
"29459",
"29462",
"29461"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05495",
"rxn08174"
]
}
},
{
"id":"BALAtex",
"name":"Beta-alanine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ala_B_e":-1.0,
"ala_B_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"BALAtex"
]
},
"annotation":{
"bigg.reaction":[
"BALAtex"
],
"metanetx.reaction":[
"MNXR95682"
],
"reactome.reaction":[
"R-RNO-909763",
"R-HSA-909765"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08175"
]
}
},
{
"id":"CRNt8pp",
"name":"L-carnitine/D-carnitine antiporter (periplasm)",
"metabolites":{
"crn__D_c":-1.0,
"crn__D_p":1.0,
"crn_c":1.0,
"crn_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0074",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CRNt8pp"
]
},
"annotation":{
"bigg.reaction":[
"CRNt8pp"
],
"metanetx.reaction":[
"MNXR96909"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08264"
]
}
},
{
"id":"BPNT",
"name":"3',5'-bisphosphate nucleotidase",
"metabolites":{
"amp_c":1.0,
"h2o_c":-1.0,
"pap_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"BPNT"
]
},
"annotation":{
"bigg.reaction":[
"BPNT"
],
"biocyc":[
"META:325-BISPHOSPHATE-NUCLEOTIDASE-RXN"
],
"ec-code":[
"3.1.3.7",
"3.1.3.97"
],
"kegg.reaction":[
"R00188"
],
"metanetx.reaction":[
"MNXR96321"
],
"reactome.reaction":[
"R-DRE-176606",
"R-HSA-176606",
"R-RNO-176606",
"R-XTR-176606",
"R-SSC-176606",
"R-TGU-176606",
"R-CEL-176606",
"R-CFA-176606",
"R-DDI-176606",
"R-BTA-176606",
"R-DME-176606",
"R-GGA-176606",
"R-MMU-176606"
],
"rhea":[
"10041",
"10040",
"10043",
"10042"
],
"sabiork":[
"736"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00137",
"rxn11357"
]
}
},
{
"id":"BSORx",
"name":"Biotin sulfoxide reductase",
"metabolites":{
"btn_c":1.0,
"btnso_c":-1.0,
"h2o_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3644",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"BSORx"
]
},
"annotation":{
"bigg.reaction":[
"BSORx"
],
"metanetx.reaction":[
"MNXR96325"
],
"rhea":[
"30534",
"30532",
"30533",
"30531"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08178"
]
}
},
{
"id":"BSORy",
"name":"Biotin sulfoxide reductase",
"metabolites":{
"btn_c":1.0,
"btnso_c":-1.0,
"h2o_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3644",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"BSORy"
]
},
"annotation":{
"bigg.reaction":[
"BSORy"
],
"ec-code":[
"1.-.-.-"
],
"kegg.reaction":[
"R10127"
],
"metanetx.reaction":[
"MNXR96326"
],
"rhea":[
"30538",
"30537",
"30535",
"30536"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08179"
]
}
},
{
"id":"BTS4",
"name":"Biotin synthase",
"metabolites":{
"amet_c":-1.0,
"btn_c":1.0,
"dad_5_c":1.0,
"dtbt_c":-1.0,
"h_c":1.0,
"met__L_c":1.0,
"s_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0794",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"BTS4"
]
},
"annotation":{
"bigg.reaction":[
"BTS4"
],
"ec-code":[
"2.8.1.6"
],
"metanetx.reaction":[
"MNXR138149"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BUTSO3tex",
"name":"Butanesulfonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"butso3_e":-1.0,
"butso3_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"BUTSO3tex"
]
},
"annotation":{
"bigg.reaction":[
"BUTSO3tex"
],
"metanetx.reaction":[
"MNXR96351"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08182"
]
}
},
{
"id":"CLIPAtex",
"name":"Cold lipid A transport via vector (periplasm to extracellular)",
"metabolites":{
"lipa_cold_e":1.0,
"lipa_cold_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"CLIPAtex"
]
},
"annotation":{
"bigg.reaction":[
"CLIPAtex"
],
"metanetx.reaction":[
"MNXR96767"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08218"
]
}
},
{
"id":"CLPNH120pp",
"name":"Cardiolipin hydrolase (periplasm, n-C12:0)",
"metabolites":{
"clpn120_p":-1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa120_p":1.0,
"pg120_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNH120pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNH120pp"
],
"metanetx.reaction":[
"MNXR96774"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNH140pp",
"name":"Cardiolipin hydrolase (periplasm, n-C14:0)",
"metabolites":{
"clpn140_p":-1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa140_p":1.0,
"pg140_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNH140pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNH140pp"
],
"metanetx.reaction":[
"MNXR96775"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNH141pp",
"name":"Cardiolipin hydrolase (periplasm, n-C14:1)",
"metabolites":{
"clpn141_p":-1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa141_p":1.0,
"pg141_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNH141pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNH141pp"
],
"metanetx.reaction":[
"MNXR96776"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNH160pp",
"name":"Cardiolipin hydrolase (periplasm, n-C16:0)",
"metabolites":{
"clpn160_p":-1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa160_p":1.0,
"pg160_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNH160pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNH160pp"
],
"metanetx.reaction":[
"MNXR96777"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08222"
]
}
},
{
"id":"CLPNH161pp",
"name":"Cardiolipin hydrolase (periplasm, n-C16:1)",
"metabolites":{
"clpn161_p":-1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa161_p":1.0,
"pg161_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNH161pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNH161pp"
],
"metanetx.reaction":[
"MNXR96778"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNH180pp",
"name":"Cardiolipin hydrolase (periplasm, n-C18:0)",
"metabolites":{
"clpn180_p":-1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa180_p":1.0,
"pg180_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNH180pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNH180pp"
],
"metanetx.reaction":[
"MNXR96779"
],
"sbo":"SBO:0000176"
}
},
{
"id":"BUTtex",
"name":"Butyrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"but_e":-1.0,
"but_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"BUTtex"
]
},
"annotation":{
"bigg.reaction":[
"BUTtex"
],
"metanetx.reaction":[
"MNXR96352"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CLPNH181pp",
"name":"Cardiolipin hydrolase (periplasm, n-C18:1)",
"metabolites":{
"clpn181_p":-1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa181_p":1.0,
"pg181_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNH181pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNH181pp"
],
"metanetx.reaction":[
"MNXR96780"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CRNtex",
"name":"L-carnitine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"crn_e":-1.0,
"crn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CRNtex"
]
},
"annotation":{
"bigg.reaction":[
"CRNtex"
],
"metanetx.reaction":[
"MNXR96906"
],
"rhea":[
"34962",
"34960",
"34959",
"34961"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09773",
"rxn09858",
"rxn09691",
"rxn08265"
]
}
},
{
"id":"CLPNS120pp",
"name":"Cardiolipin synthase (periplasmic, n-C12:0)",
"metabolites":{
"clpn120_p":1.0,
"glyc_p":1.0,
"pg120_p":-2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1739 or STM0812",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS120pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS120pp"
],
"metanetx.reaction":[
"MNXR96781"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CA2t3pp",
"name":"Calcium (Ca+2) transport out via proton antiport (periplasm)",
"metabolites":{
"ca2_c":-1.0,
"ca2_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1771",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CA2t3pp"
]
},
"annotation":{
"bigg.reaction":[
"CA2t3pp"
],
"metanetx.reaction":[
"MNXR96437"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05514",
"rxn08185"
]
}
},
{
"id":"CS",
"name":"Citrate synthase",
"metabolites":{
"accoa_c":-1.0,
"cit_c":1.0,
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"oaa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0730",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"CS"
]
},
"annotation":{
"bigg.reaction":[
"CS"
],
"biocyc":[
"META:CITSYN-RXN",
"META:RXN-14905"
],
"ec-code":[
"2.3.3.16",
"2.3.3.1",
"2.3.3.3"
],
"kegg.reaction":[
"R00351"
],
"metanetx.reaction":[
"MNXR96920"
],
"reactome.reaction":[
"R-GGA-373006",
"R-GGA-70975",
"R-CEL-70975",
"R-HSA-70975",
"R-DRE-70975",
"R-MMU-70975",
"R-ATH-70975",
"R-SPO-70975",
"R-OSA-70975",
"R-SCE-70975",
"R-SSC-70975",
"R-DDI-70975",
"R-RNO-70975",
"R-DME-70975",
"R-PFA-70975",
"R-XTR-70975",
"R-CFA-70975",
"R-BTA-70975"
],
"rhea":[
"16847",
"16846",
"16845",
"16848"
],
"sabiork":[
"267"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00256"
]
}
},
{
"id":"CA2tex",
"name":"Calcium (Ca+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ca2_e":-1.0,
"ca2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CA2tex"
]
},
"annotation":{
"bigg.reaction":[
"CA2tex"
],
"biocyc":[
"META:TRANS-RXN0-497",
"META:TRANS-RXN-144"
],
"ec-code":[
"3.6.3.8"
],
"metanetx.reaction":[
"MNXR96436"
],
"reactome.reaction":[
"R-HSA-210420",
"R-GGA-139855",
"R-HSA-432164",
"R-HSA-8863009",
"R-DME-2089943",
"R-CEL-2089943",
"R-CFA-3295579",
"R-TGU-5577213",
"R-SSC-2685505",
"R-RNO-210420",
"R-RNO-418309",
"R-TGU-5263618",
"R-DME-139854",
"R-SCE-418309",
"R-SSC-2534359",
"R-SSC-5263618",
"R-DRE-5263618",
"R-GGA-265645",
"R-RNO-3295579",
"R-ATH-2685505",
"R-TGU-265645",
"R-XTR-5263618",
"R-XTR-139854",
"R-XTR-418309",
"R-MMU-5263618",
"R-TGU-139854",
"R-GGA-418309",
"R-SSC-139854",
"R-CFA-418309",
"R-CEL-432164",
"R-SSC-2855020",
"R-DME-432164",
"R-DRE-139855",
"R-CEL-3295579",
"R-CFA-2089943",
"R-CFA-265645",
"R-GGA-432164",
"R-RNO-432164",
"R-MMU-2089943",
"R-GGA-2855020",
"R-CFA-2534359",
"R-RNO-182097",
"R-SSC-139855",
"R-CEL-139854",
"R-DRE-432164",
"R-SSC-418309",
"R-RNO-139854",
"R-DME-3295579",
"R-TGU-3295579",
"R-HSA-5263618",
"R-DDI-2685505",
"R-HSA-2534359",
"R-TGU-139855",
"R-XTR-5577213",
"R-CFA-5577213",
"R-DDI-3295579",
"R-HSA-2685505",
"R-XTR-210420",
"R-HSA-3295579",
"R-HSA-2855020",
"R-GGA-210420",
"R-DRE-2089943",
"R-CFA-2855020",
"R-RNO-139855",
"R-DME-418309",
"R-MMU-432164",
"R-BTA-139855",
"R-HSA-139854",
"R-DDI-418309",
"R-HSA-5577213",
"R-GGA-2089943",
"R-BTA-139854",
"R-CFA-2685505",
"R-MMU-2855020",
"R-HSA-418309",
"R-BTA-5577213",
"R-HSA-434798",
"R-XTR-2089943",
"R-BTA-2685505",
"R-MMU-418309",
"R-SSC-210420",
"R-HSA-169683",
"R-SSC-2089943",
"R-DRE-5577213",
"R-ATH-418309",
"R-RNO-2089943",
"R-RNO-265645",
"R-BTA-2855020",
"R-XTR-3295579",
"R-MMU-2685505",
"R-MMU-265645",
"R-CFA-139855",
"R-TGU-2685505",
"R-CFA-139854",
"R-CEL-418309",
"R-GGA-2685505",
"R-GGA-139854",
"R-XTR-2855020",
"R-BTA-265645",
"R-RNO-5263618",
"R-SSC-3295579",
"R-HSA-2089943",
"R-TGU-2855020",
"R-BTA-418309",
"R-DRE-139854",
"R-DRE-265645",
"R-GGA-3295579",
"R-XTR-2685505",
"R-BTA-2089943",
"R-MMU-210420",
"R-XTR-139855",
"R-SSC-265645",
"R-CFA-210420",
"R-XTR-265645",
"R-DME-434802",
"R-TGU-418309",
"R-MMU-3295579",
"R-RNO-2855020",
"R-SSC-5577213",
"R-OSA-2685505",
"R-HSA-4420052",
"R-DRE-2855020",
"R-BTA-5263618",
"R-GGA-5263618",
"R-CEL-5263618",
"R-RNO-2685505",
"R-GGA-5577213",
"R-BTA-210420",
"R-DRE-3295579",
"R-HSA-139855",
"R-DRE-210420",
"R-DRE-2685505",
"R-RNO-2534359",
"R-TGU-2089943",
"R-CFA-5263618",
"R-MMU-2534359",
"R-TGU-432164",
"R-BTA-2534359",
"R-MMU-139855",
"R-MMU-5577213",
"R-CFA-432164",
"R-XTR-432164",
"R-CEL-265645",
"R-SPO-418309",
"R-RNO-5577213",
"R-HSA-265645",
"R-OSA-418309",
"R-DRE-418309",
"R-BTA-3295579",
"R-TGU-210420",
"R-MMU-139854",
"R-SSC-432164",
"R-BTA-432164",
"R-DME-5263618"
],
"rhea":[
"29671",
"29674",
"29673",
"29672"
],
"sabiork":[
"12376"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08186"
]
}
},
{
"id":"CADVtpp",
"name":"Lysine/Cadaverine antiporter (periplasm)",
"metabolites":{
"15dap_c":-1.0,
"15dap_p":1.0,
"h_c":1.0,
"h_p":-1.0,
"lys__L_c":1.0,
"lys__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2558",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CADVtpp"
]
},
"annotation":{
"bigg.reaction":[
"CADVtpp"
],
"metanetx.reaction":[
"MNXR96445"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08187",
"rxn10148"
]
}
},
{
"id":"CLPNS140pp",
"name":"Cardiolipin synthase (periplasmic, n-C14:0)",
"metabolites":{
"clpn140_p":1.0,
"glyc_p":1.0,
"pg140_p":-2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1739 or STM0812",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS140pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS140pp"
],
"metanetx.reaction":[
"MNXR96782"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNS141pp",
"name":"Cardiolipin synthase (periplasmic, n-C14:1)",
"metabolites":{
"clpn141_p":1.0,
"glyc_p":1.0,
"pg141_p":-2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1739 or STM0812",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS141pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS141pp"
],
"metanetx.reaction":[
"MNXR96783"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CAt6pp",
"name":"Calcium / sodium antiporter (1:1)",
"metabolites":{
"ca2_c":-1.0,
"ca2_p":1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3314",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CAt6pp"
]
},
"annotation":{
"bigg.reaction":[
"CAt6pp"
],
"metanetx.reaction":[
"MNXR96460"
],
"rhea":[
"29258",
"29256",
"29255",
"29257"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08188",
"rxn10448"
]
}
},
{
"id":"CLPNS160pp",
"name":"Cardiolipin synthase (periplasmic, n-C16:0)",
"metabolites":{
"clpn160_p":1.0,
"glyc_p":1.0,
"pg160_p":-2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1739 or STM0812",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS160pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS160pp"
],
"metanetx.reaction":[
"MNXR96784"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08229"
]
}
},
{
"id":"CSNtex",
"name":"Cytosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"csn_e":-1.0,
"csn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CSNtex"
]
},
"annotation":{
"bigg.reaction":[
"CSNtex"
],
"metanetx.reaction":[
"MNXR96928"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08267"
]
}
},
{
"id":"CLPNS161pp",
"name":"Cardiolipin synthase (periplasmic, n-C16:1)",
"metabolites":{
"clpn161_p":1.0,
"glyc_p":1.0,
"pg161_p":-2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1739 or STM0812",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS161pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS161pp"
],
"metanetx.reaction":[
"MNXR96786"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLPNS180pp",
"name":"Cardiolipin synthase (periplasmic, n-C18:0)",
"metabolites":{
"clpn180_p":1.0,
"glyc_p":1.0,
"pg180_p":-2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1739 or STM0812",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS180pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS180pp"
],
"metanetx.reaction":[
"MNXR96787"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CBIAT",
"name":"Cobinamide adenyltransferase",
"metabolites":{
"adocbi_c":1.0,
"atp_c":-1.0,
"cbi_c":-1.0,
"h_c":-1.0,
"pppi_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1718",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CBIAT"
]
},
"annotation":{
"bigg.reaction":[
"CBIAT"
],
"biocyc":[
"META:BTUR2-RXN"
],
"ec-code":[
"2.5.1.17"
],
"metanetx.reaction":[
"MNXR96465"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CBItonex",
"name":"Cobinamide transport via ton system (extermal)",
"metabolites":{
"cbi_e":-1.0,
"cbi_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4130 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"CBItonex"
]
},
"annotation":{
"bigg.reaction":[
"CBItonex"
],
"metanetx.reaction":[
"MNXR96468"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CBIuabcpp",
"name":"Cobinamide transport via ABC system (uptake, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cbi_c":1.0,
"cbi_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1340 and STM1342 and STM0206",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CBIuabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CBIuabcpp"
],
"biocyc":[
"META:TRANS-RXN-296"
],
"ec-code":[
"3.6.3.33"
],
"metanetx.reaction":[
"MNXR96467"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CBL1abcpp",
"name":"Cob(1)alamin transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cbl1_c":1.0,
"cbl1_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1340 and STM1342 and STM0206",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CBL1abcpp"
]
},
"annotation":{
"bigg.reaction":[
"CBL1abcpp"
],
"biocyc":[
"META:ABC-5-RXN"
],
"ec-code":[
"3.6.3.33"
],
"metanetx.reaction":[
"MNXR96471"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CLPNS181pp",
"name":"Cardiolipin synthase (periplasmic, n-C18:1)",
"metabolites":{
"clpn181_p":1.0,
"glyc_p":1.0,
"pg181_p":-2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1739 or STM0812",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CLPNS181pp"
]
},
"annotation":{
"bigg.reaction":[
"CLPNS181pp"
],
"metanetx.reaction":[
"MNXR96788"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CTBTCAL2",
"name":"Crotonobetaine-CoA Ligase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ctbt_c":-1.0,
"ctbtcoa_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0071",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CTBTCAL2"
]
},
"annotation":{
"bigg.reaction":[
"CTBTCAL2"
],
"metanetx.reaction":[
"MNXR96937"
],
"rhea":[
"30081",
"30079",
"30080",
"30082"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CLt3_2pp",
"name":"Chloride transport out via proton antiport (2:1) (periplasm)",
"metabolites":{
"cl_c":2.0,
"cl_p":-2.0,
"h_c":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0203 or STM1490",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CLt3_2pp"
]
},
"annotation":{
"bigg.reaction":[
"CLt3_2pp"
],
"biocyc":[
"META:RXN0-2501"
],
"metanetx.reaction":[
"MNXR96796"
],
"rhea":[
"29569",
"29567",
"29568",
"29570"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08233"
]
}
},
{
"id":"CLtex",
"name":"Chloride (Cl-1) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cl_e":-1.0,
"cl_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CLtex"
]
},
"annotation":{
"bigg.reaction":[
"CLtex"
],
"biocyc":[
"META:TRANS-RXN-139"
],
"metanetx.reaction":[
"MNXR96797"
],
"reactome.reaction":[
"R-TGU-975340",
"R-OSA-2684901",
"R-RNO-2744228",
"R-DDI-2744228",
"R-HSA-2744228",
"R-SSC-975449",
"R-CFA-2744242",
"R-CFA-975449",
"R-GGA-975389",
"R-TGU-975449",
"R-HSA-2684901",
"R-DRE-2744349",
"R-RNO-975449",
"R-GGA-427570",
"R-XTR-2684901",
"R-SSC-2744349",
"R-BTA-2684901",
"R-HSA-427570",
"R-TGU-975389",
"R-BTA-2744349",
"R-DME-2684901",
"R-SSC-2684901",
"R-SSC-975389",
"R-BTA-975389",
"R-MMU-975389",
"R-TGU-2744242",
"R-DME-2744242",
"R-CEL-975340",
"R-PFA-427570",
"R-GGA-975449",
"R-XTR-427570",
"R-CFA-975389",
"R-DRE-975449",
"R-SSC-427570",
"R-XTR-2744349",
"R-CEL-427570",
"R-DME-2744349",
"R-HSA-2744242",
"R-GGA-2744228",
"R-SSC-975340",
"R-BTA-2744228",
"R-CEL-975389",
"R-HSA-975340",
"R-DME-975389",
"R-DRE-2684901",
"R-RNO-2744242",
"R-MMU-975449",
"R-CFA-427570",
"R-DME-427570",
"R-HSA-975449",
"R-SSC-2744242",
"R-DRE-2744228",
"R-DRE-2744242",
"R-RNO-975340",
"R-GGA-2744242",
"R-RNO-2744361",
"R-MMU-2744361",
"R-BTA-975340",
"R-SCE-427570",
"R-OSA-427570",
"R-GGA-975340",
"R-RNO-427570",
"R-XTR-975340",
"R-MMU-2684901",
"R-CFA-2744361",
"R-CFA-975340",
"R-MMU-2744242",
"R-RNO-2744349",
"R-TGU-2744228",
"R-DME-2744228",
"R-DRE-2744361",
"R-BTA-427570",
"R-SSC-2744228",
"R-SSC-2744361",
"R-DDI-427570",
"R-CEL-2684901",
"R-MMU-2744349",
"R-CFA-2744228",
"R-MMU-975340",
"R-XTR-2744228",
"R-XTR-2744361",
"R-BTA-975449",
"R-SPO-2684901",
"R-ATH-427570",
"R-TGU-427570",
"R-BTA-2744242",
"R-CFA-2744349",
"R-GGA-2684901",
"R-DDI-2684901",
"R-CFA-2684901",
"R-DRE-975389",
"R-MMU-2744228",
"R-RNO-975389",
"R-HSA-2744349",
"R-BTA-2744361",
"R-GGA-2744361",
"R-RNO-2684901",
"R-XTR-975449",
"R-TGU-2684901",
"R-CEL-2744228",
"R-DRE-975340",
"R-XTR-975389",
"R-DME-2744361",
"R-HSA-975389",
"R-MMU-427570",
"R-HSA-2744361",
"R-CEL-2744361",
"R-TGU-2744361",
"R-XTR-2744242",
"R-DME-975340",
"R-SCE-2744228",
"R-ATH-2684901"
],
"rhea":[
"29823",
"29824",
"29826",
"29825"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10473",
"rxn08234"
]
}
},
{
"id":"CMPN",
"name":"CMP nucleosidase",
"metabolites":{
"cmp_c":-1.0,
"csn_c":1.0,
"h2o_c":-1.0,
"r5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"CMPN"
]
},
"annotation":{
"bigg.reaction":[
"CMPN"
],
"ec-code":[
"3.2.2.10"
],
"metanetx.reaction":[
"MNXR96804"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CMPtex",
"name":"CMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cmp_e":-1.0,
"cmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CMPtex"
]
},
"annotation":{
"bigg.reaction":[
"CMPtex"
],
"metanetx.reaction":[
"MNXR96806"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08236",
"rxn09776"
]
}
},
{
"id":"CBL1tonex",
"name":"Cob(1)alamin transport via ton system (extermal)",
"metabolites":{
"cbl1_e":-1.0,
"cbl1_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4130 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"CBL1tonex"
]
},
"annotation":{
"bigg.reaction":[
"CBL1tonex"
],
"metanetx.reaction":[
"MNXR96472"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CBPS",
"name":"Carbamoyl-phosphate synthase (glutamine-hydrolysing)",
"metabolites":{
"adp_c":2.0,
"atp_c":-2.0,
"cbp_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"hco3_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0066 and STM0067",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"CBPS"
]
},
"annotation":{
"bigg.reaction":[
"CBPS"
],
"biocyc":[
"META:CARBPSYN-RXN"
],
"ec-code":[
"6.3.5.5"
],
"kegg.reaction":[
"R00575"
],
"metanetx.reaction":[
"MNXR96485"
],
"reactome.reaction":[
"R-RNO-73577",
"R-GGA-73577",
"R-DRE-73577",
"R-ATH-73577",
"R-CFA-73577",
"R-MMU-73577",
"R-OSA-73577",
"R-CEL-73577",
"R-SPO-73577",
"R-GGA-419440",
"R-BTA-73577",
"R-SCE-73577",
"R-XTR-73577",
"R-DDI-73577",
"R-HSA-73577",
"R-PFA-73577",
"R-TGU-73577",
"R-SSC-73577",
"R-DME-73577"
],
"rhea":[
"18635",
"18633",
"18636",
"18634"
],
"sabiork":[
"203"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00414"
]
}
},
{
"id":"CD2abcpp",
"name":"Cadmium (Cd+2) ABC transporter (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cd2_c":-1.0,
"cd2_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3576",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CD2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"CD2abcpp"
],
"biocyc":[
"META:3.6.3.3-RXN",
"META:3.6.3.46-RXN"
],
"ec-code":[
"3.6.3.46",
"3.6.3.3"
],
"metanetx.reaction":[
"MNXR96495"
],
"rhea":[
"12134#1",
"12135#1",
"12133#1",
"12132#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05516",
"rxn08195"
]
}
},
{
"id":"CD2t3pp",
"name":"Cadmium (Cd+2) transport out via proton antiport (periplasm)",
"metabolites":{
"cd2_c":-1.0,
"cd2_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0758 or STM4061",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CD2t3pp"
]
},
"annotation":{
"bigg.reaction":[
"CD2t3pp"
],
"biocyc":[
"META:TRANS-RXN0-244"
],
"metanetx.reaction":[
"MNXR96497"
],
"rhea":[
"28740",
"28741",
"28742",
"28739"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13814",
"rxn08196"
]
}
},
{
"id":"CD2tex",
"name":"Cadmium (Cd+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cd2_e":-1.0,
"cd2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CD2tex"
]
},
"annotation":{
"bigg.reaction":[
"CD2tex"
],
"biocyc":[
"META:RXN0-10"
],
"metanetx.reaction":[
"MNXR96499"
],
"rhea":[
"28709",
"28708",
"28707",
"28710"
],
"sabiork":[
"13041"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08198",
"rxn08197"
]
}
},
{
"id":"CD2tpp",
"name":"Cadmium (+2) transport in via permease (no H+)",
"metabolites":{
"cd2_c":1.0,
"cd2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3190",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CD2tpp"
]
},
"annotation":{
"bigg.reaction":[
"CD2tpp"
],
"biocyc":[
"META:RXN0-10"
],
"metanetx.reaction":[
"MNXR96499"
],
"rhea":[
"28709",
"28708",
"28707",
"28710"
],
"sabiork":[
"13041"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08198",
"rxn08197"
]
}
},
{
"id":"CDAPPA120",
"name":"CDP-Diacylglycerol pyrophostatase (n-C12:0)",
"metabolites":{
"cdpdddecg_c":-1.0,
"cmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pa120_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4064",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CDAPPA120"
]
},
"annotation":{
"bigg.reaction":[
"CDAPPA120"
],
"ec-code":[
"3.6.1.26"
],
"metanetx.reaction":[
"MNXR96500"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08199"
]
}
},
{
"id":"CO2tex",
"name":"CO2 transport via diffusion (extracellular to periplasm)",
"metabolites":{
"co2_e":-1.0,
"co2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CO2tex"
]
},
"annotation":{
"bigg.reaction":[
"CO2tex"
],
"biocyc":[
"META:TRANS-RXN0-545"
],
"metanetx.reaction":[
"MNXR96810"
],
"reactome.reaction":[
"R-DDI-1247645",
"R-CFA-1237069",
"R-TGU-1247649",
"R-CFA-1237042",
"R-CEL-1247645",
"R-XTR-1237069",
"R-HSA-1247645",
"R-OSA-1237042",
"R-GGA-1237042",
"R-BTA-1247645",
"R-GGA-1247649",
"R-RNO-1247645",
"R-XTR-1247645",
"R-TGU-1237042",
"R-SCE-1247649",
"R-MMU-1247649",
"R-CFA-1247649",
"R-GGA-1247645",
"R-SSC-1247645",
"R-BTA-1237069",
"R-RNO-1237069",
"R-SCE-1237042",
"R-DDI-1247649",
"R-SSC-1237042",
"R-DRE-1247649",
"R-DRE-1237042",
"R-DDI-1237042",
"R-DME-1237042",
"R-MMU-1237042",
"R-SSC-1247649",
"R-TGU-1237069",
"R-BTA-1247649",
"R-CFA-1247645",
"R-RNO-1247649",
"R-HSA-1237069",
"R-CEL-1237069",
"R-DDI-1237069",
"R-MMU-1237069",
"R-DME-1247645",
"R-ATH-1237042",
"R-OSA-1247649",
"R-HSA-1237042",
"R-DRE-1247645",
"R-HSA-1247649",
"R-MMU-1247645",
"R-DME-1237069",
"R-RNO-1237042",
"R-TGU-1247645",
"R-BTA-1237042",
"R-GGA-1237069",
"R-DME-1247649",
"R-SSC-1237069",
"R-DRE-1237069",
"R-ATH-1247649"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05467",
"rxn08237",
"rxn09706",
"rxn09821",
"rxn09775",
"rxn09876",
"rxn08238",
"rxn09860"
]
}
},
{
"id":"CO2tpp",
"name":"CO2 transporter via diffusion (periplasm)",
"metabolites":{
"co2_c":1.0,
"co2_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CO2tpp"
]
},
"annotation":{
"bigg.reaction":[
"CO2tpp"
],
"biocyc":[
"META:TRANS-RXN0-545"
],
"metanetx.reaction":[
"MNXR96810"
],
"reactome.reaction":[
"R-DDI-1247645",
"R-CFA-1237069",
"R-TGU-1247649",
"R-CFA-1237042",
"R-CEL-1247645",
"R-XTR-1237069",
"R-HSA-1247645",
"R-OSA-1237042",
"R-GGA-1237042",
"R-BTA-1247645",
"R-GGA-1247649",
"R-RNO-1247645",
"R-XTR-1247645",
"R-TGU-1237042",
"R-SCE-1247649",
"R-MMU-1247649",
"R-CFA-1247649",
"R-GGA-1247645",
"R-SSC-1247645",
"R-BTA-1237069",
"R-RNO-1237069",
"R-SCE-1237042",
"R-DDI-1247649",
"R-SSC-1237042",
"R-DRE-1247649",
"R-DRE-1237042",
"R-DDI-1237042",
"R-DME-1237042",
"R-MMU-1237042",
"R-SSC-1247649",
"R-TGU-1237069",
"R-BTA-1247649",
"R-CFA-1247645",
"R-RNO-1247649",
"R-HSA-1237069",
"R-CEL-1237069",
"R-DDI-1237069",
"R-MMU-1237069",
"R-DME-1247645",
"R-ATH-1237042",
"R-OSA-1247649",
"R-HSA-1237042",
"R-DRE-1247645",
"R-HSA-1247649",
"R-MMU-1247645",
"R-DME-1237069",
"R-RNO-1237042",
"R-TGU-1247645",
"R-BTA-1237042",
"R-GGA-1237069",
"R-DME-1247649",
"R-SSC-1237069",
"R-DRE-1237069",
"R-ATH-1247649"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05467",
"rxn08237",
"rxn09706",
"rxn09821",
"rxn09775",
"rxn09876",
"rxn08238",
"rxn09860"
]
}
},
{
"id":"CDAPPA140",
"name":"CDP-Diacylglycerol pyrophostatase (n-C14:0)",
"metabolites":{
"cdpdtdecg_c":-1.0,
"cmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pa140_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4064",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CDAPPA140"
]
},
"annotation":{
"bigg.reaction":[
"CDAPPA140"
],
"ec-code":[
"3.6.1.26"
],
"metanetx.reaction":[
"MNXR96501"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08200"
]
}
},
{
"id":"CTBTabcpp",
"name":"Crotonobetaine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ctbt_c":1.0,
"ctbt_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2809 and STM2810 and STM2811",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CTBTabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CTBTabcpp"
],
"metanetx.reaction":[
"MNXR96938"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CDAPPA141",
"name":"CDP-Diacylglycerol pyrophostatase (n-C14:1)",
"metabolites":{
"cdpdtdec7eg_c":-1.0,
"cmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pa141_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4064",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CDAPPA141"
]
},
"annotation":{
"bigg.reaction":[
"CDAPPA141"
],
"ec-code":[
"3.6.1.26"
],
"metanetx.reaction":[
"MNXR96502"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08201"
]
}
},
{
"id":"CDAPPA160",
"name":"CDP-Diacylglycerol pyrophostatase (n-C16:0)",
"metabolites":{
"cdpdhdecg_c":-1.0,
"cmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pa160_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4064",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CDAPPA160"
]
},
"annotation":{
"bigg.reaction":[
"CDAPPA160"
],
"ec-code":[
"3.6.1.26"
],
"metanetx.reaction":[
"MNXR96503"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08202"
]
}
},
{
"id":"COBALT2abcpp",
"name":"Cobalt (Co+2) ABC transporter (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cobalt2_c":-1.0,
"cobalt2_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3576",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"COBALT2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"COBALT2abcpp"
],
"metanetx.reaction":[
"MNXR96819"
],
"rhea":[
"32782#2",
"32779#2",
"32780#2",
"32781#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08239"
]
}
},
{
"id":"COBALT2t3pp",
"name":"Cobalt (Co+2) transport out via proton antiport (periplasm)",
"metabolites":{
"cobalt2_c":-1.0,
"cobalt2_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4061 or STM0758",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"COBALT2t3pp"
]
},
"annotation":{
"bigg.reaction":[
"COBALT2t3pp"
],
"metanetx.reaction":[
"MNXR96820"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08240",
"rxn13681"
]
}
},
{
"id":"COBALT2tex",
"name":"Cobalt (Co+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cobalt2_e":-1.0,
"cobalt2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"COBALT2tex"
]
},
"annotation":{
"bigg.reaction":[
"COBALT2tex"
],
"biocyc":[
"META:TRANS-RXN-141A"
],
"metanetx.reaction":[
"MNXR96821"
],
"rhea":[
"28579",
"28580",
"28581",
"28578"
],
"sabiork":[
"12148"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08241",
"rxn08242",
"rxn10474"
]
}
},
{
"id":"CTBTt2rpp",
"name":"Cronobetaine outward transport (H+ antiport)",
"metabolites":{
"ctbt_c":1.0,
"ctbt_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4290",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CTBTt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"CTBTt2rpp"
],
"metanetx.reaction":[
"MNXR96939"
],
"sbo":"SBO:0000185"
}
},
{
"id":"COBALT2tpp_copy1",
"name":"Cobalt transport in via permease (no H+)",
"metabolites":{
"cobalt2_c":1.0,
"cobalt2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3190 or STM3952",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"COBALT2tpp",
"Cobalt2abcppII"
]
},
"annotation":{
"bigg.reaction":[
"COBALT2tpp"
],
"biocyc":[
"META:TRANS-RXN-141A"
],
"metanetx.reaction":[
"MNXR96821"
],
"rhea":[
"28579",
"28580",
"28581",
"28578"
],
"sabiork":[
"12148"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08241",
"rxn08242",
"rxn10474"
]
}
},
{
"id":"COLIPAabcpp",
"name":"Core oligosaccharide lipid A transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"colipa_c":-1.0,
"colipa_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"COLIPAabcpp"
]
},
"annotation":{
"bigg.reaction":[
"COLIPAabcpp"
],
"metanetx.reaction":[
"MNXR96844"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08243"
]
}
},
{
"id":"COLIPAtex",
"name":"Core oligosaccharide lipid A transport via vector (periplasm to extracellular)",
"metabolites":{
"colipa_e":1.0,
"colipa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"COLIPAtex"
]
},
"annotation":{
"bigg.reaction":[
"COLIPAtex"
],
"metanetx.reaction":[
"MNXR96846"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08244"
]
}
},
{
"id":"CDAPPA161",
"name":"CDP-Diacylglycerol pyrophostatase (n-C16:1)",
"metabolites":{
"cdpdhdec9eg_c":-1.0,
"cmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pa161_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4064",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CDAPPA161"
]
},
"annotation":{
"bigg.reaction":[
"CDAPPA161"
],
"ec-code":[
"3.6.1.26"
],
"metanetx.reaction":[
"MNXR96505"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08203"
]
}
},
{
"id":"CDAPPA180",
"name":"CDP-Diacylglycerol pyrophostatase (n-C18:0)",
"metabolites":{
"cdpdodecg_c":-1.0,
"cmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pa180_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4064",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CDAPPA180"
]
},
"annotation":{
"bigg.reaction":[
"CDAPPA180"
],
"ec-code":[
"3.6.1.26"
],
"metanetx.reaction":[
"MNXR96506"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08204"
]
}
},
{
"id":"CDAPPA181",
"name":"CDP-Diacylglycerol pyrophostatase (n-C18:1)",
"metabolites":{
"cdpdodec11eg_c":-1.0,
"cmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pa181_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4064",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"CDAPPA181"
]
},
"annotation":{
"bigg.reaction":[
"CDAPPA181"
],
"ec-code":[
"3.6.1.26"
],
"metanetx.reaction":[
"MNXR96507"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08205"
]
}
},
{
"id":"CPGNR1",
"name":"Coprogen(Fe(III)) reductase",
"metabolites":{
"cpgn_c":-2.0,
"cpgn_un_c":2.0,
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CPGNR1"
]
},
"annotation":{
"bigg.reaction":[
"CPGNR1"
],
"metanetx.reaction":[
"MNXR96868"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08247"
]
}
},
{
"id":"CTPS2",
"name":"CTP synthase (glutamine)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ctp_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pi_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2953",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"CTPS2"
]
},
"annotation":{
"bigg.reaction":[
"CTPS2"
],
"biocyc":[
"META:CTPSYN-RXN"
],
"ec-code":[
"6.3.4.2"
],
"kegg.reaction":[
"R00573"
],
"metanetx.reaction":[
"MNXR96945"
],
"reactome.reaction":[
"R-RNO-504054",
"R-TGU-73647",
"R-RNO-73647",
"R-PFA-73647",
"R-BTA-504054",
"R-MMU-504054",
"R-SSC-73647",
"R-BTA-73647",
"R-SCE-504054",
"R-XTR-504054",
"R-OSA-73647",
"R-SPO-504054",
"R-TGU-504054",
"R-PFA-504054",
"R-DRE-73647",
"R-DME-504054",
"R-MMU-73647",
"R-OSA-504054",
"R-CFA-73647",
"R-HSA-73647",
"R-DDI-73647",
"R-DME-73647",
"R-SCE-73647",
"R-HSA-504054",
"R-GGA-73647",
"R-CFA-504054",
"R-ATH-504054",
"R-ATH-73647",
"R-DDI-504054",
"R-XTR-73647",
"R-GGA-504054",
"R-SPO-73647",
"R-SSC-504054"
],
"rhea":[
"26427",
"26429",
"26426",
"26428"
],
"sabiork":[
"459"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00412",
"rxn11276"
]
}
},
{
"id":"CPGNR2",
"name":"Coprogen(Fe(III)) reductase",
"metabolites":{
"cpgn_c":-2.0,
"cpgn_un_c":2.0,
"fe2_c":2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CPGNR2"
]
},
"annotation":{
"bigg.reaction":[
"CPGNR2"
],
"metanetx.reaction":[
"MNXR96869"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08248"
]
}
},
{
"id":"CPGNR3",
"name":"Coprogen(Fe(III)) reductase",
"metabolites":{
"cpgn_c":-2.0,
"cpgn_un_c":2.0,
"fe2_c":2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CPGNR3"
]
},
"annotation":{
"bigg.reaction":[
"CPGNR3"
],
"metanetx.reaction":[
"MNXR96870"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08249"
]
}
},
{
"id":"CU1Opp",
"name":"Cuprous Oxidase (Cu+1)",
"metabolites":{
"cu2_p":4.0,
"cu_p":-4.0,
"h2o_p":2.0,
"h_p":-4.0,
"o2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0168",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CU1Opp"
]
},
"annotation":{
"bigg.reaction":[
"CU1Opp"
],
"ec-code":[
"1.16.3"
],
"metanetx.reaction":[
"MNXR96948"
],
"rhea":[
"30086",
"30085",
"30084",
"30083"
],
"sabiork":[
"7055"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CPGNUtex",
"name":"Coprogen unloaded secretion (extracellular)",
"metabolites":{
"cpgn_un_e":1.0,
"cpgn_un_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CPGNUtex"
]
},
"annotation":{
"bigg.reaction":[
"CPGNUtex"
],
"metanetx.reaction":[
"MNXR96871"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08251"
]
}
},
{
"id":"CPGNUtpp",
"name":"Coprogen unloaded secretion",
"metabolites":{
"cpgn_un_c":-1.0,
"cpgn_un_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CPGNUtpp"
]
},
"annotation":{
"bigg.reaction":[
"CPGNUtpp"
],
"metanetx.reaction":[
"MNXR96872"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08252"
]
}
},
{
"id":"CPGNabcpp",
"name":"Coprogen transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cpgn_c":1.0,
"cpgn_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0194 and STM0192 and STM0193",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CPGNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CPGNabcpp"
],
"metanetx.reaction":[
"MNXR96873"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08245"
]
}
},
{
"id":"CPGNexs",
"name":"Coprogen Fe-loading reaction (spontaneaous)",
"metabolites":{
"cpgn_e":1.0,
"cpgn_un_e":-1.0,
"fe3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CPGNexs"
]
},
"annotation":{
"bigg.reaction":[
"CPGNexs"
],
"metanetx.reaction":[
"MNXR96874"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08246"
]
}
},
{
"id":"DAMPtex",
"name":"DAMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"damp_e":-1.0,
"damp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DAMPtex"
]
},
"annotation":{
"bigg.reaction":[
"DAMPtex"
],
"metanetx.reaction":[
"MNXR97136"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08303"
]
}
},
{
"id":"DAPDC",
"name":"Diaminopimelate decarboxylase",
"metabolites":{
"26dap__M_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"lys__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3013",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"DAPDC"
]
},
"annotation":{
"bigg.reaction":[
"DAPDC"
],
"biocyc":[
"META:DIAMINOPIMDECARB-RXN"
],
"ec-code":[
"4.1.1.20"
],
"kegg.reaction":[
"R00451"
],
"metanetx.reaction":[
"MNXR97141"
],
"rhea":[
"15101",
"15104",
"15102",
"15103"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00313"
]
}
},
{
"id":"DAPE",
"name":"Diaminopimelate epimerase",
"metabolites":{
"26dap_LL_c":-1.0,
"26dap__M_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3947",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"DAPE"
]
},
"annotation":{
"bigg.reaction":[
"DAPE"
],
"biocyc":[
"META:DIAMINOPIMEPIM-RXN"
],
"ec-code":[
"5.1.1.7"
],
"kegg.reaction":[
"R02735"
],
"metanetx.reaction":[
"MNXR97143"
],
"rhea":[
"15396",
"15395",
"15393",
"15394"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01974"
]
}
},
{
"id":"DAPabcpp",
"name":"M-diaminopimelic acid ABC transport (periplasm)",
"metabolites":{
"26dap__M_c":1.0,
"26dap__M_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1954",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DAPabcpp"
]
},
"annotation":{
"bigg.reaction":[
"DAPabcpp"
],
"biocyc":[
"META:TRANS-RXN-291"
],
"metanetx.reaction":[
"MNXR97146"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08304",
"rxn10145"
]
}
},
{
"id":"DAPtex",
"name":"1,5-Diaminopentane transport via diffusion (extracellular to periplasm)",
"metabolites":{
"15dap_e":-1.0,
"15dap_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DAPtex"
]
},
"annotation":{
"bigg.reaction":[
"DAPtex"
],
"metanetx.reaction":[
"MNXR97147"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08305"
]
}
},
{
"id":"CPGNtonex",
"name":"Coprogen transport via ton system (extracellular)",
"metabolites":{
"cpgn_e":-1.0,
"cpgn_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1204 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"CPGNtonex"
]
},
"annotation":{
"bigg.reaction":[
"CPGNtonex"
],
"metanetx.reaction":[
"MNXR96875"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08250"
]
}
},
{
"id":"CU1abcpp",
"name":"Copper (Cu +1) ABC transporter (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cu_c":-1.0,
"cu_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0498",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CU1abcpp"
]
},
"annotation":{
"bigg.reaction":[
"CU1abcpp"
],
"biocyc":[
"META:TRANS-RXN0-207",
"META:RXN-14455"
],
"ec-code":[
"3.6.3.54"
],
"metanetx.reaction":[
"MNXR96949"
],
"rhea":[
"25795#1",
"25794#1",
"25793#1",
"25792#1"
],
"sabiork":[
"12237#1"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CPPPGO",
"name":"Coproporphyrinogen oxidase (O2 required)",
"metabolites":{
"co2_c":2.0,
"cpppg3_c":-1.0,
"h2o_c":2.0,
"h_c":-2.0,
"o2_c":-1.0,
"pppg9_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2451",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPPPGO"
]
},
"annotation":{
"bigg.reaction":[
"CPPPGO"
],
"biocyc":[
"META:RXN0-1461"
],
"ec-code":[
"1.3.3.3"
],
"kegg.reaction":[
"R03220"
],
"metanetx.reaction":[
"MNXR96880"
],
"rhea":[
"18257",
"18258",
"18259",
"18260"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02303"
]
}
},
{
"id":"CPPPGO2",
"name":"Oxygen Independent coproporphyrinogen-III oxidase",
"metabolites":{
"amet_c":-2.0,
"co2_c":2.0,
"cpppg3_c":-1.0,
"dad_5_c":2.0,
"met__L_c":2.0,
"pppg9_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4004",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CPPPGO2"
]
},
"annotation":{
"bigg.reaction":[
"CPPPGO2"
],
"biocyc":[
"META:HEMN-RXN"
],
"ec-code":[
"1.3.98.3",
"1.3.99.22"
],
"kegg.reaction":[
"R06895"
],
"metanetx.reaction":[
"MNXR96881"
],
"rhea":[
"15425",
"15427",
"15428",
"15426"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04704"
]
}
},
{
"id":"DASYN120",
"name":"CDP-diacylglycerol synthetase (n-C12:0)",
"metabolites":{
"cdpdddecg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa120_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0222",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN120"
]
},
"annotation":{
"bigg.reaction":[
"DASYN120"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97154"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08306"
]
}
},
{
"id":"DASYN140",
"name":"CDP-diacylglycerol synthetase (n-C14:0)",
"metabolites":{
"cdpdtdecg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa140_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0222",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN140"
]
},
"annotation":{
"bigg.reaction":[
"DASYN140"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97155"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08307"
]
}
},
{
"id":"CRNBTCT",
"name":"Gamma-butyrobetainyl-CoA: carnitine CoA transferase",
"metabolites":{
"bbtcoa_c":-1.0,
"crn_c":-1.0,
"crncoa_c":1.0,
"gbbtn_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0072",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CRNBTCT"
]
},
"annotation":{
"bigg.reaction":[
"CRNBTCT"
],
"biocyc":[
"META:RXN0-3601"
],
"ec-code":[
"2.8.3.21"
],
"kegg.reaction":[
"R10644"
],
"metanetx.reaction":[
"MNXR96894"
],
"rhea":[
"28420",
"28418",
"28421",
"28419"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AU1abcpp",
"name":"Gold Au 1 ABC transporter periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"au_c":-1.0,
"au_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0353",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"AU1abcpp"
]
},
"annotation":{
"bigg.reaction":[
"AU1abcpp"
],
"metanetx.reaction":[
"MNXR96144"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CRNCAL2",
"name":"Carnitine-CoA Ligase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"crn_c":-1.0,
"crncoa_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0071",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CRNCAL2"
]
},
"annotation":{
"bigg.reaction":[
"CRNCAL2"
],
"metanetx.reaction":[
"MNXR96895"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CRNCAR",
"name":"Carnitine-CoA racemase",
"metabolites":{
"crnDcoa_c":1.0,
"crncoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0070",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CRNCAR"
]
},
"annotation":{
"bigg.reaction":[
"CRNCAR"
],
"biocyc":[
"META:CARNCOARACE-RXN"
],
"ec-code":[
"5.1.1"
],
"metanetx.reaction":[
"MNXR96896"
],
"rhea":[
"30541",
"30542",
"30539",
"30540"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CRNCBCT",
"name":"Crotonobetainyl-CoA: carnitine CoA transferase",
"metabolites":{
"crn_c":-1.0,
"crncoa_c":1.0,
"ctbt_c":1.0,
"ctbtcoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0072",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CRNCBCT"
]
},
"annotation":{
"bigg.reaction":[
"CRNCBCT"
],
"biocyc":[
"META:RXN-14936"
],
"ec-code":[
"2.8.3.21"
],
"kegg.reaction":[
"R10643"
],
"metanetx.reaction":[
"MNXR96899"
],
"rhea":[
"28527",
"28529",
"28528",
"28526"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DASYN141",
"name":"CDP-diacylglycerol synthetase (n-C14:1)",
"metabolites":{
"cdpdtdec7eg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa141_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0222",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN141"
]
},
"annotation":{
"bigg.reaction":[
"DASYN141"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97156"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08308"
]
}
},
{
"id":"DASYN160",
"name":"CDP-diacylglycerol synthetase (n-C16:0)",
"metabolites":{
"cdpdhdecg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa160_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0222",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN160"
]
},
"annotation":{
"bigg.reaction":[
"DASYN160"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97157"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08309"
]
}
},
{
"id":"DASYN161",
"name":"CDP-diacylglycerol synthetase (n-C16:1)",
"metabolites":{
"cdpdhdec9eg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa161_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0222",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN161"
]
},
"annotation":{
"bigg.reaction":[
"DASYN161"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97159"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08310"
]
}
},
{
"id":"DASYN180",
"name":"CDP-diacylglycerol synthetase (n-C18:0)",
"metabolites":{
"cdpdodecg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa180_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0222",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN180"
]
},
"annotation":{
"bigg.reaction":[
"DASYN180"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97160"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08311"
]
}
},
{
"id":"CRNCDH",
"name":"Carnityl-CoA dehydratse",
"metabolites":{
"crncoa_c":-1.0,
"ctbtcoa_c":1.0,
"h2o_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0070",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CRNCDH"
]
},
"annotation":{
"bigg.reaction":[
"CRNCDH"
],
"biocyc":[
"META:CARNDETRU-RXN"
],
"ec-code":[
"4.2.1.149"
],
"kegg.reaction":[
"R10675"
],
"metanetx.reaction":[
"MNXR96900"
],
"rhea":[
"28339",
"28341",
"28340",
"28338"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CU2abcpp",
"name":"Copper (Cu+2) ABC transporter (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cu2_c":-1.0,
"cu2_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3576",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CU2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"CU2abcpp"
],
"biocyc":[
"META:TRANS-RXN-178",
"META:3.6.3.4-RXN"
],
"ec-code":[
"3.6.3.4",
"3.6.3"
],
"metanetx.reaction":[
"MNXR96950"
],
"reactome.reaction":[
"R-CFA-936802",
"R-DDI-936895",
"R-XTR-936802",
"R-BTA-936802",
"R-RNO-936895",
"R-SPO-936895",
"R-GGA-936895",
"R-TGU-936802",
"R-RNO-936802",
"R-XTR-936895",
"R-MMU-936895",
"R-TGU-936895",
"R-DME-936802",
"R-MMU-936802",
"R-HSA-936802",
"R-SSC-936802",
"R-DRE-936802",
"R-CFA-936895",
"R-DRE-936895",
"R-BTA-936895",
"R-CEL-936895",
"R-OSA-936895",
"R-DME-936895",
"R-GGA-936802",
"R-HSA-936895",
"R-CEL-936802",
"R-SCE-936895",
"R-ATH-936895"
],
"rhea":[
"10376#1",
"10377#1",
"10379#1",
"10378#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08271",
"rxn05528"
]
}
},
{
"id":"DASYN181",
"name":"CDP-diacylglycerol synthetase (n-C18:1)",
"metabolites":{
"cdpdodec11eg_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"pa181_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0222",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DASYN181"
]
},
"annotation":{
"bigg.reaction":[
"DASYN181"
],
"ec-code":[
"2.7.7.41"
],
"metanetx.reaction":[
"MNXR97161"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08312"
]
}
},
{
"id":"DATPHs",
"name":"DATP amine hydrolysis (spontaneous)",
"metabolites":{
"datp_c":-1.0,
"ditp_c":1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DATPHs"
]
},
"annotation":{
"bigg.reaction":[
"DATPHs"
],
"metanetx.reaction":[
"MNXR97174"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08313"
]
}
},
{
"id":"CU2tex",
"name":"Copper (Cu+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cu2_e":-1.0,
"cu2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2267 or STM0320 or STM0999 or STM1473",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CU2tex"
]
},
"annotation":{
"bigg.reaction":[
"CU2tex"
],
"biocyc":[
"META:RXN0-14"
],
"metanetx.reaction":[
"MNXR96951"
],
"reactome.reaction":[
"R-HSA-437300",
"R-DME-437300",
"R-RNO-437300",
"R-SCE-437300",
"R-DRE-437300",
"R-XTR-437300",
"R-TGU-437300",
"R-BTA-437300",
"R-CFA-437300",
"R-SSC-437300",
"R-MMU-437300",
"R-GGA-437300"
],
"rhea":[
"28705",
"28706",
"28704",
"28703"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08274",
"rxn05212",
"rxn08273"
]
}
},
{
"id":"DB4PS",
"name":"3,4-Dihydroxy-2-butanone-4-phosphate synthase",
"metabolites":{
"db4p_c":1.0,
"for_c":1.0,
"h_c":1.0,
"ru5p__D_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3195",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DB4PS"
]
},
"annotation":{
"bigg.reaction":[
"DB4PS"
],
"ec-code":[
"4.1.99.12"
],
"kegg.reaction":[
"R07281"
],
"metanetx.reaction":[
"MNXR97178"
],
"sabiork":[
"9052"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05040"
]
}
},
{
"id":"DBTS",
"name":"Dethiobiotin synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"co2_c":-1.0,
"dann_c":-1.0,
"dtbt_c":1.0,
"h_c":3.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0797 or STM1489",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DBTS"
]
},
"annotation":{
"bigg.reaction":[
"DBTS"
],
"biocyc":[
"META:DETHIOBIOTIN-SYN-RXN"
],
"ec-code":[
"6.3.3.3"
],
"kegg.reaction":[
"R03182"
],
"metanetx.reaction":[
"MNXR97180"
],
"rhea":[
"15807",
"15808",
"15806",
"15805"
],
"sabiork":[
"3011"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02277"
]
}
},
{
"id":"DMQMT",
"name":"3-Dimethylubiquinonol 3-methyltransferase",
"metabolites":{
"2omhmbl_c":-1.0,
"ahcys_c":1.0,
"amet_c":-1.0,
"h_c":1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2276",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DMQMT"
]
},
"annotation":{
"bigg.reaction":[
"DMQMT"
],
"biocyc":[
"META:DHHB-METHYLTRANSFER-RXN"
],
"ec-code":[
"2.1.1.64"
],
"metanetx.reaction":[
"MNXR97527"
],
"rhea":[
"28682",
"28680",
"28679",
"28681"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08353"
]
}
},
{
"id":"CU2tpp",
"name":"Copper transport in via permease (no H+)",
"metabolites":{
"cu2_c":1.0,
"cu2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3190",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CU2tpp"
]
},
"annotation":{
"bigg.reaction":[
"CU2tpp"
],
"biocyc":[
"META:RXN0-14"
],
"metanetx.reaction":[
"MNXR96951"
],
"reactome.reaction":[
"R-HSA-437300",
"R-DME-437300",
"R-RNO-437300",
"R-SCE-437300",
"R-DRE-437300",
"R-XTR-437300",
"R-TGU-437300",
"R-BTA-437300",
"R-CFA-437300",
"R-SSC-437300",
"R-MMU-437300",
"R-GGA-437300"
],
"rhea":[
"28705",
"28706",
"28704",
"28703"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08274",
"rxn05212",
"rxn08273"
]
}
},
{
"id":"DMSOtex",
"name":"Dimethyl sulfoxide transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dmso_e":-1.0,
"dmso_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DMSOtex"
]
},
"annotation":{
"bigg.reaction":[
"DMSOtex"
],
"biocyc":[
"META:TRANS-RXN0-273"
],
"metanetx.reaction":[
"MNXR97533"
],
"rhea":[
"29700",
"29701",
"29702",
"29699"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08358"
]
}
},
{
"id":"DMStex",
"name":"Dimethyl sulfide transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dms_e":-1.0,
"dms_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DMStex"
]
},
"annotation":{
"bigg.reaction":[
"DMStex"
],
"metanetx.reaction":[
"MNXR97534"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08359",
"rxn10500"
]
}
},
{
"id":"DM_4hba_c",
"name":"Sink needed to allow 4-hydroxy-benzoate to leave system",
"metabolites":{
"4hba_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Intracellular demand",
"notes":{
"original_bigg_ids":[
"DM_4HBA"
]
},
"annotation":{
"bigg.reaction":[
"DM_4hba_c"
],
"biocyc":[
"META:TRANS-RXN0-274"
],
"metanetx.reaction":[
"MNXR95007"
],
"sbo":"SBO:0000628",
"seed.reaction":[
"rxn12376"
]
}
},
{
"id":"DCAtex",
"name":"Decanoate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dca_e":-1.0,
"dca_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DCAtex"
]
},
"annotation":{
"bigg.reaction":[
"DCAtex"
],
"metanetx.reaction":[
"MNXR97181"
],
"sbo":"SBO:0000185"
}
},
{
"id":"DCMPtex",
"name":"DCMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dcmp_e":-1.0,
"dcmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DCMPtex"
]
},
"annotation":{
"bigg.reaction":[
"DCMPtex"
],
"metanetx.reaction":[
"MNXR97186"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08315"
]
}
},
{
"id":"DCTPD",
"name":"DCTP deaminase",
"metabolites":{
"dctp_c":-1.0,
"dutp_c":1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2121",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DCTPD"
]
},
"annotation":{
"bigg.reaction":[
"DCTPD"
],
"biocyc":[
"META:DCTP-DEAM-RXN"
],
"ec-code":[
"3.5.4.13"
],
"kegg.reaction":[
"R02325"
],
"metanetx.reaction":[
"MNXR97201"
],
"rhea":[
"22683",
"22681",
"22682",
"22680"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01672"
]
}
},
{
"id":"DCYTD",
"name":"Deoxycytidine deaminase",
"metabolites":{
"dcyt_c":-1.0,
"duri_c":1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2183",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DCYTD"
]
},
"annotation":{
"bigg.reaction":[
"DCYTD"
],
"biocyc":[
"META:CYTIDEAM-RXN"
],
"ec-code":[
"3.5.4.5"
],
"kegg.reaction":[
"R02485"
],
"metanetx.reaction":[
"MNXR97207"
],
"reactome.reaction":[
"R-GGA-73608",
"R-HSA-73608",
"R-RNO-73608",
"R-DDI-73608",
"R-SPO-73608",
"R-DME-73608",
"R-DRE-73608",
"R-CFA-73608",
"R-SCE-73608",
"R-BTA-73608",
"R-CEL-73608",
"R-TGU-73608",
"R-MMU-73608",
"R-SSC-73608"
],
"rhea":[
"13436",
"13434",
"13433",
"13435"
],
"sabiork":[
"364"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01800"
]
}
},
{
"id":"DCYTt2pp",
"name":"Deoxycytidine transport in via proton symport (periplasm)",
"metabolites":{
"dcyt_c":1.0,
"dcyt_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113 or STM2409",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DCYTt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DCYTt2pp"
],
"biocyc":[
"META:TRANS-RXN-108D"
],
"metanetx.reaction":[
"MNXR97209"
],
"rhea":[
"29975",
"29976",
"29978",
"29977"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05205",
"rxn08316"
]
}
},
{
"id":"CUtex",
"name":"Copper (Cu+1) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cu_e":-1.0,
"cu_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CUtex"
]
},
"annotation":{
"bigg.reaction":[
"CUtex"
],
"metanetx.reaction":[
"MNXR96954"
],
"sbo":"SBO:0000185"
}
},
{
"id":"DCYTtex",
"name":"Deoxycytidine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dcyt_e":-1.0,
"dcyt_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0413",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"DCYTtex"
]
},
"annotation":{
"bigg.reaction":[
"DCYTtex"
],
"metanetx.reaction":[
"MNXR97208"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08317",
"rxn11014"
]
}
},
{
"id":"DDCAtexi",
"name":"Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ddca_e":-1.0,
"ddca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2391",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"DDCAtexi"
]
},
"annotation":{
"bigg.reaction":[
"DDCAtexi"
],
"metanetx.reaction":[
"MNXR97211"
],
"sbo":"SBO:0000185"
}
},
{
"id":"DDGALK",
"name":"2-dehydro-3-deoxygalactonokinase",
"metabolites":{
"2dh3dgal6p_c":1.0,
"2dh3dgal_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3829",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DDGALK"
]
},
"annotation":{
"bigg.reaction":[
"DDGALK"
],
"biocyc":[
"META:DEHYDDEOXGALACTKIN-RXN"
],
"ec-code":[
"2.7.1.58",
"2.7.1.178"
],
"kegg.reaction":[
"R03387"
],
"metanetx.reaction":[
"MNXR97213"
],
"rhea":[
"16527",
"16525",
"16526",
"16528"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02429"
]
}
},
{
"id":"DM_5drib_c",
"name":"Sink needed to allow 5'-deoxyribose to leave system",
"metabolites":{
"5drib_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Intracellular demand",
"notes":{
"original_bigg_ids":[
"DM_5DRIB"
]
},
"annotation":{
"bigg.reaction":[
"DM_5drib_c"
],
"metanetx.reaction":[
"MNXR142736"
],
"sbo":"SBO:0000628"
}
},
{
"id":"DM_hmfurn_c",
"name":"Sink needed to allow 4-hydroxy-5-methyl-3(2H)-furanone to leave system",
"metabolites":{
"hmfurn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Intracellular demand",
"notes":{
"original_bigg_ids":[
"DM_HMFURN"
]
},
"annotation":{
"bigg.reaction":[
"DM_hmfurn_c"
],
"metanetx.reaction":[
"MNXR142768"
],
"sbo":"SBO:0000628"
}
},
{
"id":"DM_oxam_c",
"name":"Sink needed to allow oxamate to leave system",
"metabolites":{
"oxam_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Intracellular demand",
"notes":{
"original_bigg_ids":[
"DM_OXAM"
]
},
"annotation":{
"bigg.reaction":[
"DM_oxam_c"
],
"metanetx.reaction":[
"MNXR131355"
],
"sabiork":[
"12467"
],
"sbo":"SBO:0000628"
}
},
{
"id":"DNMPPA",
"name":"Dihydroneopterin monophosphate dephosphorylase",
"metabolites":{
"dhnpt_c":1.0,
"dhpmp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DNMPPA"
]
},
"annotation":{
"bigg.reaction":[
"DNMPPA"
],
"biocyc":[
"META:DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN"
],
"ec-code":[
"3.6.1",
"3.6.1.-"
],
"kegg.reaction":[
"R04621"
],
"metanetx.reaction":[
"MNXR126238"
],
"rhea":[
"25308",
"25309",
"25306",
"25307"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03168"
]
}
},
{
"id":"DNTPPA",
"name":"Dihydroneopterin triphosphate pyrophosphatase",
"metabolites":{
"ahdt_c":-1.0,
"dhpmp_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1900 or STM0137",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DNTPPA"
]
},
"annotation":{
"bigg.reaction":[
"DNTPPA"
],
"biocyc":[
"META:H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN"
],
"ec-code":[
"3.6.1.67"
],
"kegg.reaction":[
"R04638"
],
"metanetx.reaction":[
"MNXR97680"
],
"rhea":[
"25302",
"25305",
"25303",
"25304"
],
"sabiork":[
"10428"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03173"
]
}
},
{
"id":"DDGLCNtex",
"name":"2-dehydro-3-deoxy-D-gluconate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"2ddglcn_e":-1.0,
"2ddglcn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DDGLCNtex"
]
},
"annotation":{
"bigg.reaction":[
"DDGLCNtex"
],
"metanetx.reaction":[
"MNXR138208"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08320"
]
}
},
{
"id":"CYANST",
"name":"Cyanide sulfurtransferase",
"metabolites":{
"cyan_c":-1.0,
"h_c":1.0,
"so3_c":1.0,
"tcynt_c":1.0,
"tsul_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3525",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"CYANST"
]
},
"annotation":{
"bigg.reaction":[
"CYANST"
],
"biocyc":[
"META:THIOSULFATE-SULFURTRANSFERASE-RXN"
],
"ec-code":[
"2.8.1.1"
],
"kegg.reaction":[
"R01931"
],
"metanetx.reaction":[
"MNXR138187"
],
"rhea":[
"16883",
"16884",
"16882",
"16881"
],
"sabiork":[
"7692"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01416"
]
}
},
{
"id":"DDGLK",
"name":"2-dehydro-3-deoxygluconokinase",
"metabolites":{
"2ddg6p_c":1.0,
"2ddglcn_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3612",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DDGLK"
]
},
"annotation":{
"bigg.reaction":[
"DDGLK"
],
"biocyc":[
"META:DEOXYGLUCONOKIN-RXN"
],
"ec-code":[
"2.7.1.45",
"2.7.1.178"
],
"kegg.reaction":[
"R01541"
],
"metanetx.reaction":[
"MNXR138209"
],
"rhea":[
"14799",
"14797",
"14798",
"14800"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01123"
]
}
},
{
"id":"DDPA",
"name":"3-deoxy-D-arabino-heptulosonate 7-phosphate synthetase",
"metabolites":{
"2dda7p_c":1.0,
"e4p_c":-1.0,
"h2o_c":-1.0,
"pep_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2670 or STM0760 or STM1347",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"DDPA"
]
},
"annotation":{
"bigg.reaction":[
"DDPA"
],
"biocyc":[
"META:DAHPSYN-RXN"
],
"ec-code":[
"2.5.1.54"
],
"kegg.reaction":[
"R01826"
],
"metanetx.reaction":[
"MNXR97218"
],
"reactome.reaction":[
"R-MTU-964912"
],
"rhea":[
"14718",
"14719",
"14717",
"14720"
],
"sabiork":[
"1910"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01332"
]
}
},
{
"id":"DGK1",
"name":"Deoxyguanylate kinase (dGMP:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dgdp_c":1.0,
"dgmp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3740",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DGK1"
]
},
"annotation":{
"bigg.reaction":[
"DGK1"
],
"biocyc":[
"META:GMKALT-RXN"
],
"ec-code":[
"2.7.4.13",
"2.7.4.12",
"2.7.4.8"
],
"kegg.reaction":[
"R02090"
],
"metanetx.reaction":[
"MNXR97320"
],
"reactome.reaction":[
"R-BTA-110133",
"R-SCE-73788",
"R-XTR-110133",
"R-SCE-110133",
"R-RNO-73788",
"R-HSA-110133",
"R-DRE-110133",
"R-SSC-73788",
"R-GGA-110133",
"R-GGA-73788",
"R-DME-110133",
"R-CFA-73788",
"R-SPO-110133",
"R-BTA-73788",
"R-RNO-110133",
"R-DDI-110133",
"R-MMU-73788",
"R-DDI-73788",
"R-MMU-110133",
"R-TGU-73788",
"R-DME-73788",
"R-CFA-110133",
"R-CEL-110133",
"R-DRE-73788",
"R-PFA-73788",
"R-HSA-73788",
"R-XTR-73788",
"R-CEL-73788",
"R-TGU-110133",
"R-PFA-110133",
"R-SPO-73788",
"R-SSC-110133"
],
"rhea":[
"12697",
"12699",
"12698",
"12700"
],
"sabiork":[
"303"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01509"
]
}
},
{
"id":"DOGULNR",
"name":"2,3 dioxo-L-gulonate reductase",
"metabolites":{
"23doguln_c":-1.0,
"3dhguln_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3668",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DOGULNR"
]
},
"annotation":{
"bigg.reaction":[
"DOGULNR"
],
"biocyc":[
"META:RXN0-703"
],
"ec-code":[
"1.1.1.130"
],
"kegg.reaction":[
"R02637"
],
"metanetx.reaction":[
"MNXR97688"
],
"rhea":[
"21927",
"21925",
"21926",
"21924"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01911"
]
}
},
{
"id":"DOPAtex",
"name":"Dopamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dopa_e":-1.0,
"dopa_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DOPAtex"
]
},
"annotation":{
"bigg.reaction":[
"DOPAtex"
],
"metanetx.reaction":[
"MNXR97758"
],
"reactome.reaction":[
"R-TGU-372542",
"R-GGA-372542",
"R-CFA-372542",
"R-BTA-372542",
"R-CEL-372542",
"R-DRE-372542",
"R-HSA-372542",
"R-MMU-372542",
"R-SSC-372542",
"R-DME-372542",
"R-RNO-372542",
"R-HSA-351596"
],
"sabiork":[
"7032"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08363"
]
}
},
{
"id":"DPCOAK",
"name":"Dephospho-CoA kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"coa_c":1.0,
"dpcoa_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0140",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DPCOAK"
]
},
"annotation":{
"bigg.reaction":[
"DPCOAK"
],
"biocyc":[
"META:DEPHOSPHOCOAKIN-RXN"
],
"ec-code":[
"2.7.1.24"
],
"kegg.reaction":[
"R00130"
],
"metanetx.reaction":[
"MNXR97762"
],
"reactome.reaction":[
"R-XTR-196773",
"R-SSC-196773",
"R-RNO-196773",
"R-CFA-196773",
"R-DDI-196773",
"R-CEL-196773",
"R-GGA-196773",
"R-MMU-196773",
"R-OSA-196773",
"R-PFA-196773",
"R-SCE-196773",
"R-DRE-196773",
"R-TGU-196773",
"R-ATH-196773",
"R-DME-196773",
"R-HSA-196773",
"R-BTA-196773"
],
"rhea":[
"18248",
"18245",
"18247",
"18246"
],
"sabiork":[
"48"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00100"
]
}
},
{
"id":"DRPA",
"name":"Deoxyribose-phosphate aldolase",
"metabolites":{
"2dr5p_c":-1.0,
"acald_c":1.0,
"g3p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4567",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DRPA"
]
},
"annotation":{
"bigg.reaction":[
"DRPA"
],
"biocyc":[
"META:DEOXYRIBOSE-P-ALD-RXN"
],
"ec-code":[
"4.1.2.4"
],
"kegg.reaction":[
"R01066"
],
"metanetx.reaction":[
"MNXR97787"
],
"reactome.reaction":[
"R-XTR-6787321",
"R-PFA-6787321",
"R-RNO-6787321",
"R-SSC-6787321",
"R-TGU-6787321",
"R-CEL-6787321",
"R-BTA-6787321",
"R-GGA-6787321",
"R-CFA-6787321",
"R-HSA-6787321",
"R-DME-6787321",
"R-DRE-6787321",
"R-MMU-6787321"
],
"rhea":[
"12823",
"12822",
"12821",
"12824"
],
"sabiork":[
"64"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00784"
]
}
},
{
"id":"DGMPtex",
"name":"DGMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dgmp_e":-1.0,
"dgmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DGMPtex"
]
},
"annotation":{
"bigg.reaction":[
"DGMPtex"
],
"metanetx.reaction":[
"MNXR97322"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08322"
]
}
},
{
"id":"DGSNt2pp",
"name":"Deoxyguanosine transport in via proton symport (periplasm)",
"metabolites":{
"dgsn_c":1.0,
"dgsn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DGSNt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DGSNt2pp"
],
"metanetx.reaction":[
"MNXR97325"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09688",
"rxn08323"
]
}
},
{
"id":"CYANSTpp",
"name":"Cyanide sulfurtransferase (periplasmic)",
"metabolites":{
"cyan_p":-1.0,
"h_p":1.0,
"so3_p":1.0,
"tcynt_p":1.0,
"tsul_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1686",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"CYANSTpp"
]
},
"annotation":{
"bigg.reaction":[
"CYANSTpp"
],
"biocyc":[
"META:THIOSULFATE-SULFURTRANSFERASE-RXN"
],
"ec-code":[
"2.8.1.1"
],
"kegg.reaction":[
"R01931"
],
"metanetx.reaction":[
"MNXR138187"
],
"rhea":[
"16883",
"16884",
"16882",
"16881"
],
"sabiork":[
"7692"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01416"
]
}
},
{
"id":"DGSNtex",
"name":"Deoxyguanosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dgsn_e":-1.0,
"dgsn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DGSNtex"
]
},
"annotation":{
"bigg.reaction":[
"DGSNtex"
],
"metanetx.reaction":[
"MNXR97324"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08324"
]
}
},
{
"id":"DSBAO1",
"name":"DsbA protein reoxidation reaction (aerobic)",
"metabolites":{
"dsbaox_p":1.0,
"dsbard_p":-1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3997 and STM1807",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"DSBAO1"
]
},
"annotation":{
"bigg.reaction":[
"DSBAO1"
],
"metanetx.reaction":[
"MNXR97791"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08366"
]
}
},
{
"id":"DSBAO2",
"name":"DsbA protein reoxidation reaction (anaerobic)",
"metabolites":{
"dsbaox_p":1.0,
"dsbard_p":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3997 and STM1807",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"DSBAO2"
]
},
"annotation":{
"bigg.reaction":[
"DSBAO2"
],
"metanetx.reaction":[
"MNXR97792"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08367"
]
}
},
{
"id":"DSBCGT",
"name":"DsbC:glutathione thiotransferase",
"metabolites":{
"dsbcox_p":-1.0,
"dsbcrd_p":1.0,
"gthox_p":1.0,
"gthrd_p":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3043",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"DSBCGT"
]
},
"annotation":{
"bigg.reaction":[
"DSBCGT"
],
"metanetx.reaction":[
"MNXR97793"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08368"
]
}
},
{
"id":"DSBDR",
"name":"DsbD reductase",
"metabolites":{
"dsbdox_c":-1.0,
"dsbdrd_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM4323 and STM3915) or (STM4323 and STM2649)",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"DSBDR"
]
},
"annotation":{
"bigg.reaction":[
"DSBDR"
],
"metanetx.reaction":[
"MNXR97794"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08369"
]
}
},
{
"id":"DSBGGT",
"name":"DsbG:glutathione thiotransferase",
"metabolites":{
"dsbgox_p":-1.0,
"dsbgrd_p":1.0,
"gthox_p":1.0,
"gthrd_p":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0607",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"DSBGGT"
]
},
"annotation":{
"bigg.reaction":[
"DSBGGT"
],
"metanetx.reaction":[
"MNXR97795"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08370"
]
}
},
{
"id":"DHAD1",
"name":"Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylbutanoate)",
"metabolites":{
"23dhmb_c":-1.0,
"3mob_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3904",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"DHAD1"
]
},
"annotation":{
"bigg.reaction":[
"DHAD1"
],
"biocyc":[
"META:DIHYDROXYISOVALDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.9"
],
"kegg.reaction":[
"R04441"
],
"metanetx.reaction":[
"MNXR97358"
],
"rhea":[
"24810",
"24811",
"24809",
"24812"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHAD2",
"name":"Dihydroxy-acid dehydratase (2,3-dihydroxy-3-methylpentanoate)",
"metabolites":{
"23dhmp_c":-1.0,
"3mop_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3904",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"DHAD2"
]
},
"annotation":{
"bigg.reaction":[
"DHAD2"
],
"biocyc":[
"META:DIHYDROXYMETVALDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.9"
],
"kegg.reaction":[
"R05070"
],
"metanetx.reaction":[
"MNXR97359"
],
"rhea":[
"27694",
"27696",
"27697",
"27695"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHAtex",
"name":"Dihydroxyacetone transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dha_e":-1.0,
"dha_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DHAtex"
]
},
"annotation":{
"bigg.reaction":[
"DHAtex"
],
"biocyc":[
"META:TRANS-RXN0-559"
],
"metanetx.reaction":[
"MNXR97367"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08325",
"rxn08326",
"rxn05532"
]
}
},
{
"id":"DHAtpp",
"name":"Dihydroxyacetone transport via facilitated diffusion (periplasm)",
"metabolites":{
"dha_c":1.0,
"dha_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DHAtpp"
]
},
"annotation":{
"bigg.reaction":[
"DHAtpp"
],
"biocyc":[
"META:TRANS-RXN0-559"
],
"metanetx.reaction":[
"MNXR97367"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08325",
"rxn08326",
"rxn05532"
]
}
},
{
"id":"DHBD",
"name":"2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase",
"metabolites":{
"23ddhb_c":-1.0,
"23dhb_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0598",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHBD"
]
},
"annotation":{
"bigg.reaction":[
"DHBD"
],
"biocyc":[
"META:DHBDEHYD-RXN"
],
"ec-code":[
"1.3.1.28"
],
"kegg.reaction":[
"R01505"
],
"metanetx.reaction":[
"MNXR97368"
],
"rhea":[
"23826",
"23827",
"23825",
"23824"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01094"
]
}
},
{
"id":"DSERDHr",
"name":"D-serine dehydrogenase",
"metabolites":{
"2amsa_c":1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"ser__D_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1511",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"DSERDHr"
]
},
"annotation":{
"bigg.reaction":[
"DSERDHr"
],
"metanetx.reaction":[
"MNXR97797"
],
"rhea":[
"30107",
"30109",
"30110",
"30108"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08371"
]
}
},
{
"id":"DSERt2pp",
"name":"D-serine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ser__D_c":1.0,
"ser__D_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4398",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DSERt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DSERt2pp"
],
"biocyc":[
"META:RXN0-5130"
],
"metanetx.reaction":[
"MNXR97798"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05649",
"rxn08372"
]
}
},
{
"id":"DSERtex",
"name":"D-serine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ser__D_e":-1.0,
"ser__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DSERtex"
]
},
"annotation":{
"bigg.reaction":[
"DSERtex"
],
"biocyc":[
"META:TRANS-RXN0-495"
],
"metanetx.reaction":[
"MNXR97799"
],
"rhea":[
"29457",
"29456",
"29455",
"29458"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08373",
"rxn10965"
]
}
},
{
"id":"DHBS",
"name":"2,3-dihydroxybenzoate adenylate synthase",
"metabolites":{
"23dhb_c":-1.0,
"23dhba_c":1.0,
"atp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0596",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHBS"
]
},
"annotation":{
"bigg.reaction":[
"DHBS"
],
"biocyc":[
"META:DHBAMPLIG-RXN"
],
"ec-code":[
"2.7.7.58"
],
"kegg.reaction":[
"R01504"
],
"metanetx.reaction":[
"MNXR97369"
],
"rhea":[
"20231",
"20229",
"20230",
"20232"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01093"
]
}
},
{
"id":"CYANtex",
"name":"Cyanide transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cyan_e":-1.0,
"cyan_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CYANtex"
]
},
"annotation":{
"bigg.reaction":[
"CYANtex"
],
"metanetx.reaction":[
"MNXR96957"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08276"
]
}
},
{
"id":"DHDPRy",
"name":"Dihydrodipicolinate reductase (NADPH)",
"metabolites":{
"23dhdp_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"thdp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0064",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"DHDPRy"
]
},
"annotation":{
"bigg.reaction":[
"DHDPRy"
],
"ec-code":[
"1.3.1.26"
],
"metanetx.reaction":[
"MNXR134418"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02929"
]
}
},
{
"id":"DHDPS",
"name":"Dihydrodipicolinate synthase",
"metabolites":{
"23dhdp_c":1.0,
"aspsa_c":-1.0,
"h2o_c":2.0,
"h_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2489",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"DHDPS"
]
},
"annotation":{
"bigg.reaction":[
"DHDPS"
],
"metanetx.reaction":[
"MNXR125801"
],
"rhea":[
"14846",
"14848",
"14847",
"14845"
],
"sabiork":[
"2256"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01644"
]
}
},
{
"id":"DTMPK",
"name":"DTMP kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dtdp_c":1.0,
"dtmp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1200",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DTMPK"
]
},
"annotation":{
"bigg.reaction":[
"DTMPK"
],
"biocyc":[
"META:DTMPKI-RXN"
],
"ec-code":[
"2.7.4.13",
"2.7.4.12",
"2.7.4.9"
],
"kegg.reaction":[
"R02094"
],
"metanetx.reaction":[
"MNXR97804"
],
"rhea":[
"13520",
"13518",
"13517",
"13519"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01513"
]
}
},
{
"id":"DTMPtex",
"name":"DTMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dtmp_e":-1.0,
"dtmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DTMPtex"
]
},
"annotation":{
"bigg.reaction":[
"DTMPtex"
],
"metanetx.reaction":[
"MNXR97806"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08374"
]
}
},
{
"id":"CYNTtex",
"name":"Cyanate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cynt_e":-1.0,
"cynt_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CYNTtex"
]
},
"annotation":{
"bigg.reaction":[
"CYNTtex"
],
"biocyc":[
"META:TRANS-RXN-14"
],
"metanetx.reaction":[
"MNXR96963"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08279"
]
}
},
{
"id":"DUMPtex",
"name":"DUMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dump_e":-1.0,
"dump_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DUMPtex"
]
},
"annotation":{
"bigg.reaction":[
"DUMPtex"
],
"metanetx.reaction":[
"MNXR97813"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09816",
"rxn08375"
]
}
},
{
"id":"DURIK1",
"name":"Deoxyuridine kinase (ATP:Deoxyuridine)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dump_c":1.0,
"duri_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1750",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DURIK1"
]
},
"annotation":{
"bigg.reaction":[
"DURIK1"
],
"biocyc":[
"META:DURIDKI-RXN"
],
"ec-code":[
"2.7.1.145",
"2.7.1.21"
],
"kegg.reaction":[
"R02099"
],
"metanetx.reaction":[
"MNXR97817"
],
"rhea":[
"28209",
"28206",
"28207",
"28208"
],
"sabiork":[
"500"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01518"
]
}
},
{
"id":"DURIPP",
"name":"Deoxyuridine phosphorylase",
"metabolites":{
"2dr1p_c":1.0,
"duri_c":-1.0,
"pi_c":-1.0,
"ura_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4568 or STM4570",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DURIPP"
]
},
"annotation":{
"bigg.reaction":[
"DURIPP"
],
"biocyc":[
"META:URA-PHOSPH-RXN"
],
"ec-code":[
"2.4.2.3",
"2.4.2.1",
"2.4.2.4",
"2.4.2.2"
],
"kegg.reaction":[
"R02484"
],
"metanetx.reaction":[
"MNXR97818"
],
"rhea":[
"22825",
"22824",
"22827",
"22826"
],
"sabiork":[
"511"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01799"
]
}
},
{
"id":"DHFR",
"name":"Dihydrofolate reductase",
"metabolites":{
"dhf_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"thf_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0087",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHFR"
]
},
"annotation":{
"bigg.reaction":[
"DHFR"
],
"ec-code":[
"1.5.1.3"
],
"kegg.reaction":[
"R00939"
],
"metanetx.reaction":[
"MNXR97401"
],
"reactome.reaction":[
"R-SCE-197972",
"R-HSA-197972",
"R-RNO-197972",
"R-CEL-197972",
"R-TGU-197972",
"R-XTR-197972",
"R-SPO-197972",
"R-SSC-197972",
"R-CFA-197972",
"R-GGA-197972",
"R-BTA-197972",
"R-DRE-197972",
"R-DDI-197972",
"R-MMU-197972",
"R-DME-197972"
],
"rhea":[
"15010",
"15009",
"15012",
"15011"
],
"sabiork":[
"100"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHFS",
"name":"Dihydrofolate synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dhf_c":1.0,
"dhpt_c":-1.0,
"glu__L_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2365",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHFS"
]
},
"annotation":{
"bigg.reaction":[
"DHFS"
],
"biocyc":[
"META:DIHYDROFOLATESYNTH-RXN"
],
"ec-code":[
"6.3.2.12",
"6.3.2.17"
],
"kegg.reaction":[
"R02237"
],
"metanetx.reaction":[
"MNXR140043"
],
"rhea":[
"23585",
"23587",
"23584",
"23586"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01603"
]
}
},
{
"id":"DHNAOT4",
"name":"1,4-dihydroxy-2-naphthoate octaprenyltransferase",
"metabolites":{
"2dmmql8_c":1.0,
"co2_c":1.0,
"dhna_c":-1.0,
"h_c":-1.0,
"octdp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4090",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHNAOT4"
]
},
"annotation":{
"bigg.reaction":[
"DHNAOT4"
],
"biocyc":[
"META:DMK-RXN"
],
"ec-code":[
"2.5.1.74"
],
"metanetx.reaction":[
"MNXR97408"
],
"rhea":[
"30101",
"30100",
"30099",
"30102"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08333"
]
}
},
{
"id":"DURIt2pp",
"name":"Deoxyuridine transport in via proton symport (periplasm)",
"metabolites":{
"duri_c":1.0,
"duri_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2409 or STM3113",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DURIt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DURIt2pp"
],
"biocyc":[
"META:TRANS-RXN-108F"
],
"metanetx.reaction":[
"MNXR97820"
],
"rhea":[
"29970",
"29969",
"29968",
"29967"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09685",
"rxn08376"
]
}
},
{
"id":"DURItex",
"name":"Deoxyuridine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"duri_e":-1.0,
"duri_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0413",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"DURItex"
]
},
"annotation":{
"bigg.reaction":[
"DURItex"
],
"metanetx.reaction":[
"MNXR97819"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10984",
"rxn08377"
]
}
},
{
"id":"DHNPA2r",
"name":"Dihydroneopterin aldolase reversible",
"metabolites":{
"6hmhpt_c":1.0,
"dhnpt_c":-1.0,
"gcald_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3206",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHNPA2"
]
},
"annotation":{
"bigg.reaction":[
"DHNPA2r"
],
"biocyc":[
"META:H2NEOPTERINALDOL-RXN"
],
"ec-code":[
"4.1.2.25"
],
"kegg.reaction":[
"R03504"
],
"metanetx.reaction":[
"MNXR125603"
],
"rhea":[
"10541",
"10540",
"10542",
"10543"
],
"sabiork":[
"3293"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02504"
]
}
},
{
"id":"DUTPDP",
"name":"DUTP diphosphatase",
"metabolites":{
"dump_c":1.0,
"dutp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3731",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DUTPDP"
]
},
"annotation":{
"bigg.reaction":[
"DUTPDP"
],
"biocyc":[
"META:DUTP-PYROP-RXN"
],
"ec-code":[
"3.6.1.-",
"3.6.1.23",
"3.6.1.9"
],
"kegg.reaction":[
"R02100"
],
"metanetx.reaction":[
"MNXR97822"
],
"reactome.reaction":[
"R-SSC-73666",
"R-CEL-73666",
"R-ATH-73666",
"R-OSA-73666",
"R-BTA-73666",
"R-HSA-73666",
"R-DME-73666",
"R-GGA-73666",
"R-DRE-73666",
"R-SPO-73666",
"R-MMU-73666",
"R-CFA-73666",
"R-DDI-73666",
"R-RNO-73666",
"R-SCE-73666",
"R-TGU-73666"
],
"rhea":[
"10251",
"10249",
"10250",
"10248"
],
"sabiork":[
"365"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01519"
]
}
},
{
"id":"DHORD2",
"name":"Dihydoorotic acid dehydrogenase (quinone8)",
"metabolites":{
"dhor__S_c":-1.0,
"orot_c":1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1058",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHORD2"
]
},
"annotation":{
"bigg.reaction":[
"DHORD2"
],
"metanetx.reaction":[
"MNXR97418"
],
"rhea":[
"28689",
"28688",
"28690",
"28687"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08335"
]
}
},
{
"id":"CYSDS_copy1",
"name":"Cysteine Desulfhydrase",
"metabolites":{
"cys__L_c":-1.0,
"h2o_c":-1.0,
"h2s_c":1.0,
"nh4_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3161",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"CYSDS",
"CYSLDS"
]
},
"annotation":{
"bigg.reaction":[
"CYSDS"
],
"biocyc":[
"META:LCYSDESULF-RXN"
],
"ec-code":[
"4.4.1.28",
"4.4.1.8",
"4.4.1.1"
],
"kegg.reaction":[
"R00782"
],
"metanetx.reaction":[
"MNXR96994"
],
"rhea":[
"24932",
"24931",
"24933",
"24934"
],
"sabiork":[
"1131"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00566"
]
}
},
{
"id":"DHORD5",
"name":"Dihydroorotic acid (menaquinone-8)",
"metabolites":{
"dhor__S_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"orot_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1058",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHORD5"
]
},
"annotation":{
"bigg.reaction":[
"DHORD5"
],
"metanetx.reaction":[
"MNXR97421"
],
"rhea":[
"29200",
"29201",
"29199",
"29202"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08336"
]
}
},
{
"id":"DHORTS",
"name":"Dihydroorotase",
"metabolites":{
"cbasp_c":1.0,
"dhor__S_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1163",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHORTS"
]
},
"annotation":{
"bigg.reaction":[
"DHORTS"
],
"biocyc":[
"META:DIHYDROOROT-RXN"
],
"ec-code":[
"3.5.2.3"
],
"kegg.reaction":[
"R01993"
],
"metanetx.reaction":[
"MNXR97428"
],
"reactome.reaction":[
"R-CFA-73571",
"R-BTA-73571",
"R-SCE-73571",
"R-MMU-73571",
"R-GGA-73571",
"R-CEL-73571",
"R-OSA-73571",
"R-SPO-73571",
"R-TGU-73571",
"R-SSC-73571",
"R-RNO-73571",
"R-GGA-419465",
"R-HSA-73571",
"R-DDI-73571",
"R-DRE-73571",
"R-XTR-73571",
"R-DME-73571",
"R-ATH-73571",
"R-PFA-73571"
],
"rhea":[
"24296",
"24298",
"24299",
"24297"
],
"sabiork":[
"399"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01465"
]
}
},
{
"id":"DXPRIi",
"name":"1-deoxy-D-xylulose reductoisomerase",
"metabolites":{
"2me4p_c":1.0,
"dxyl5p_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0220",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DXPRIi"
]
},
"annotation":{
"bigg.reaction":[
"DXPRIi"
],
"biocyc":[
"META:DXPREDISOM-RXN"
],
"ec-code":[
"1.1.1.267"
],
"kegg.reaction":[
"R05688"
],
"metanetx.reaction":[
"MNXR97830"
],
"rhea":[
"13720",
"13717",
"13718",
"13719"
],
"sabiork":[
"5284"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03958"
]
}
},
{
"id":"DXPS",
"name":"1-deoxy-D-xylulose 5-phosphate synthase",
"metabolites":{
"co2_c":1.0,
"dxyl5p_c":1.0,
"g3p_c":-1.0,
"h_c":-1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0422",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DXPS"
]
},
"annotation":{
"bigg.reaction":[
"DXPS"
],
"biocyc":[
"META:DXS-RXN"
],
"ec-code":[
"2.2.1.7"
],
"kegg.reaction":[
"R05636"
],
"metanetx.reaction":[
"MNXR97831"
],
"rhea":[
"12605",
"12607",
"12608",
"12606"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03909"
]
}
},
{
"id":"DXYLK",
"name":"1-Deoxy-D-xylulose kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dxyl5p_c":1.0,
"dxyl_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3660",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DXYLK"
]
},
"annotation":{
"bigg.reaction":[
"DXYLK"
],
"biocyc":[
"META:RXN0-382"
],
"ec-code":[
"2.7.1"
],
"metanetx.reaction":[
"MNXR97832"
],
"rhea":[
"27991",
"27990",
"27993",
"27992"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08380"
]
}
},
{
"id":"DHPPDA2",
"name":"Diaminohydroxyphosphoribosylaminopryrimidine deaminase (25drapp)",
"metabolites":{
"25drapp_c":-1.0,
"5apru_c":1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0416",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHPPDA2"
]
},
"annotation":{
"bigg.reaction":[
"DHPPDA2"
],
"biocyc":[
"META:RIBOFLAVINSYNDEAM-RXN"
],
"ec-code":[
"3.5.4.26"
],
"kegg.reaction":[
"R03459"
],
"metanetx.reaction":[
"MNXR97435"
],
"rhea":[
"21871",
"21869",
"21868",
"21870"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHPS2",
"name":"Dihydropteroate synthase",
"metabolites":{
"4abz_c":-1.0,
"6hmhptpp_c":-1.0,
"dhpt_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3295",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHPS2"
]
},
"annotation":{
"bigg.reaction":[
"DHPS2"
],
"biocyc":[
"META:H2PTEROATESYNTH-RXN"
],
"ec-code":[
"2.5.1.15"
],
"kegg.reaction":[
"R03067"
],
"metanetx.reaction":[
"MNXR140085"
],
"rhea":[
"19950",
"19949",
"19952",
"19951"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn12954"
]
}
},
{
"id":"CYSDtex",
"name":"D-cysteine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cys__D_e":-1.0,
"cys__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CYSDtex"
]
},
"annotation":{
"bigg.reaction":[
"CYSDtex"
],
"metanetx.reaction":[
"MNXR96997"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08283"
]
}
},
{
"id":"DHPTDCs",
"name":"4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous)",
"metabolites":{
"dhptd_c":-1.0,
"h2o_c":1.0,
"hmfurn_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"DHPTDCs"
]
},
"annotation":{
"bigg.reaction":[
"DHPTDCs"
],
"metanetx.reaction":[
"MNXR97441"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08340"
]
}
},
{
"id":"D_LACt2pp",
"name":"D-lactate transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"lac__D_c":1.0,
"lac__D_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3692",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"D_LACt2pp"
]
},
"annotation":{
"bigg.reaction":[
"D_LACt2pp"
],
"biocyc":[
"META:TRANS-RXN0-515"
],
"metanetx.reaction":[
"MNXR97838"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10171",
"rxn09772",
"rxn08350"
]
}
},
{
"id":"D_LACtex",
"name":"D-lactate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"lac__D_e":-1.0,
"lac__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"D_LACtex"
]
},
"annotation":{
"bigg.reaction":[
"D_LACtex"
],
"metanetx.reaction":[
"MNXR97840"
],
"sabiork":[
"12471"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08351"
]
}
},
{
"id":"DHQS",
"name":"3-dehydroquinate synthase",
"metabolites":{
"2dda7p_c":-1.0,
"3dhq_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3486",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"DHQS"
]
},
"annotation":{
"bigg.reaction":[
"DHQS"
],
"biocyc":[
"META:3-DEHYDROQUINATE-SYNTHASE-RXN"
],
"ec-code":[
"4.2.3.4"
],
"kegg.reaction":[
"R03083"
],
"metanetx.reaction":[
"MNXR97447"
],
"rhea":[
"21968",
"21970",
"21971",
"21969"
],
"sabiork":[
"2923"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02212"
]
}
},
{
"id":"DHQTi",
"name":"3-dehydroquinate dehydratase, irreversible",
"metabolites":{
"3dhq_c":-1.0,
"3dhsk_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1358",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"DHQTi"
]
},
"annotation":{
"bigg.reaction":[
"DHQTi"
],
"biocyc":[
"META:3-DEHYDROQUINATE-DEHYDRATASE-RXN"
],
"ec-code":[
"4.2.1.10"
],
"kegg.reaction":[
"R03084"
],
"metanetx.reaction":[
"MNXR97449"
],
"rhea":[
"21099",
"21097",
"21096",
"21098"
],
"sabiork":[
"2924"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02213"
]
}
},
{
"id":"E4PD",
"name":"Erythrose 4-phosphate dehydrogenase",
"metabolites":{
"4per_c":1.0,
"e4p_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3070",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"E4PD"
]
},
"annotation":{
"bigg.reaction":[
"E4PD"
],
"biocyc":[
"META:ERYTH4PDEHYDROG-RXN"
],
"ec-code":[
"1.2.1.72"
],
"kegg.reaction":[
"R01825"
],
"metanetx.reaction":[
"MNXR97842"
],
"rhea":[
"12058",
"12057",
"12059",
"12056"
],
"sabiork":[
"1909"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01331"
]
}
},
{
"id":"CYSS",
"name":"Cysteine synthase",
"metabolites":{
"ac_c":1.0,
"acser_c":-1.0,
"cys__L_c":1.0,
"h2s_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2430 or STM2440",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"CYSS"
]
},
"annotation":{
"bigg.reaction":[
"CYSS"
],
"biocyc":[
"META:ACSERLY-RXN"
],
"ec-code":[
"2.5.1.47",
"2.5.1.65"
],
"kegg.reaction":[
"R00897"
],
"metanetx.reaction":[
"MNXR97007"
],
"rhea":[
"14829",
"14831",
"14830",
"14832"
],
"sabiork":[
"1220"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00649"
]
}
},
{
"id":"EAR100x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C10:0)",
"metabolites":{
"dcaACP_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"tdec2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR100x"
]
},
"annotation":{
"bigg.reaction":[
"EAR100x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97845"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR100y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C10:0)",
"metabolites":{
"dcaACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"tdec2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR100y"
]
},
"annotation":{
"bigg.reaction":[
"EAR100y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97846"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DIMPtex",
"name":"DIMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dimp_e":-1.0,
"dimp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DIMPtex"
]
},
"annotation":{
"bigg.reaction":[
"DIMPtex"
],
"metanetx.reaction":[
"MNXR97463"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08342"
]
}
},
{
"id":"DINSt2pp",
"name":"Deoxyinosine transport in via proton symport (periplasm)",
"metabolites":{
"din_c":1.0,
"din_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DINSt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DINSt2pp"
],
"biocyc":[
"META:TRANS-RXN-108E"
],
"metanetx.reaction":[
"MNXR97465"
],
"rhea":[
"29971",
"29972",
"29974",
"29973"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08343",
"rxn09687"
]
}
},
{
"id":"EAR120x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:0)",
"metabolites":{
"ddcaACP_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"tddec2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR120x"
]
},
"annotation":{
"bigg.reaction":[
"EAR120x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97847"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DINStex",
"name":"Deoxyinosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"din_e":-1.0,
"din_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DINStex"
]
},
"annotation":{
"bigg.reaction":[
"DINStex"
],
"metanetx.reaction":[
"MNXR97466"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08344"
]
}
},
{
"id":"EAR120y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:0)",
"metabolites":{
"ddcaACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"tddec2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR120y"
]
},
"annotation":{
"bigg.reaction":[
"EAR120y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97848"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYSSADS",
"name":"L-cysteine sulfinic acid desulfurase",
"metabolites":{
"3sala_c":-1.0,
"ala__L_c":1.0,
"h_c":-2.0,
"so2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2984",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"CYSSADS"
]
},
"annotation":{
"bigg.reaction":[
"CYSSADS"
],
"ec-code":[
"4.1.1.12",
"4.4.1.1"
],
"kegg.reaction":[
"R00863"
],
"metanetx.reaction":[
"MNXR97008"
],
"sabiork":[
"1198"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00624"
]
}
},
{
"id":"EAR121x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C12:1)",
"metabolites":{
"cddec5eACP_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"t3c5ddeceACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR121x"
]
},
"annotation":{
"bigg.reaction":[
"EAR121x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97849"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR121y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C12:1)",
"metabolites":{
"cddec5eACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"t3c5ddeceACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR121y"
]
},
"annotation":{
"bigg.reaction":[
"EAR121y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97850"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DKGLCNR1",
"name":"2,5-diketo-D-gluconate reductase",
"metabolites":{
"25dkglcn_c":-1.0,
"2dhguln_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3165 or STM0255",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DKGLCNR1"
]
},
"annotation":{
"bigg.reaction":[
"DKGLCNR1"
],
"metanetx.reaction":[
"MNXR97489"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08345"
]
}
},
{
"id":"DKGLCNR2x",
"name":"2,5-diketo-D-gluconate reductase (NADH)",
"metabolites":{
"25dkglcn_c":-1.0,
"5dglcn_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DKGLCNR2x"
]
},
"annotation":{
"bigg.reaction":[
"DKGLCNR2x"
],
"metanetx.reaction":[
"MNXR97490"
],
"rhea":[
"30103",
"30105",
"30106",
"30104"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08346"
]
}
},
{
"id":"EAR140x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:0)",
"metabolites":{
"h_c":-1.0,
"myrsACP_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"tmrs2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR140x"
]
},
"annotation":{
"bigg.reaction":[
"EAR140x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97851"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DKGLCNR2y",
"name":"2,5-diketo-D-gluconate reductase (NADPH)",
"metabolites":{
"25dkglcn_c":-1.0,
"5dglcn_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DKGLCNR2y"
]
},
"annotation":{
"bigg.reaction":[
"DKGLCNR2y"
],
"biocyc":[
"META:YIAE1-RXN"
],
"ec-code":[
"1.1.1",
"1.1.1.215"
],
"kegg.reaction":[
"R08879"
],
"metanetx.reaction":[
"MNXR97491"
],
"rhea":[
"27637",
"27635",
"27634",
"27636"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08347"
]
}
},
{
"id":"CYSTL",
"name":"Cystathionine b-lyase",
"metabolites":{
"cyst__L_c":-1.0,
"h2o_c":-1.0,
"hcys__L_c":1.0,
"nh4_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1464 or STM3161 or STM1557",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"CYSTL"
]
},
"annotation":{
"bigg.reaction":[
"CYSTL"
],
"ec-code":[
"4.4.1.8"
],
"kegg.reaction":[
"R01286"
],
"metanetx.reaction":[
"MNXR96469"
],
"rhea":[
"13967",
"13965",
"13968",
"13966"
],
"sabiork":[
"1501"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DKMPPD",
"name":"2,3-diketo-5-methylthio-1-phosphopentane degradation reaction",
"metabolites":{
"2kmb_c":1.0,
"dkmpp_c":-1.0,
"for_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"o2_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"DKMPPD"
]
},
"annotation":{
"bigg.reaction":[
"DKMPPD"
],
"metanetx.reaction":[
"MNXR126322"
],
"rhea":[
"27925",
"27922",
"27924",
"27923"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08348"
]
}
},
{
"id":"EAR140y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:0)",
"metabolites":{
"h_c":-1.0,
"myrsACP_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"tmrs2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR140y"
]
},
"annotation":{
"bigg.reaction":[
"EAR140y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97852"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR141x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C14:1)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"t3c7mrseACP_c":-1.0,
"tdeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR141x"
]
},
"annotation":{
"bigg.reaction":[
"EAR141x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97853"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DKMPPD3",
"name":"2,3-diketo-5-methylthio-1-phosphopentane degradation reaction",
"metabolites":{
"2kmb_c":1.0,
"dkmpp_c":-1.0,
"for_c":1.0,
"h2o_c":-3.0,
"h_c":4.0,
"nad_c":-2.0,
"nadh_c":2.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"DKMPPD3"
]
},
"annotation":{
"bigg.reaction":[
"DKMPPD3"
],
"metanetx.reaction":[
"MNXR138248"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08349"
]
}
},
{
"id":"DMATT",
"name":"Dimethylallyltranstransferase",
"metabolites":{
"dmpp_c":-1.0,
"grdp_c":1.0,
"ipdp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0423",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DMATT"
]
},
"annotation":{
"bigg.reaction":[
"DMATT"
],
"biocyc":[
"META:GPPSYN-RXN"
],
"ec-code":[
"2.5.1.1"
],
"kegg.reaction":[
"R01658"
],
"metanetx.reaction":[
"MNXR97512"
],
"reactome.reaction":[
"R-HSA-191322",
"R-CFA-191322",
"R-CEL-191322",
"R-XTR-191322",
"R-GGA-191322",
"R-ATH-191322",
"R-DME-191322",
"R-SPO-191322",
"R-SSC-191322",
"R-DDI-191322",
"R-BTA-191322",
"R-MMU-191322",
"R-DRE-191322",
"R-PFA-191322",
"R-RNO-191322",
"R-TGU-191322",
"R-OSA-191322",
"R-SCE-191322"
],
"rhea":[
"22410",
"22409",
"22411",
"22408"
],
"sabiork":[
"1793"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01213"
]
}
},
{
"id":"DMPPS",
"name":"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (dmpp)",
"metabolites":{
"dmpp_c":1.0,
"h2mb4p_c":-1.0,
"h2o_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0049",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DMPPS"
]
},
"annotation":{
"bigg.reaction":[
"DMPPS"
],
"ec-code":[
"1.17.1.2"
],
"metanetx.reaction":[
"MNXR97524"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08352"
]
}
},
{
"id":"EAR141y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C14:1)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"t3c7mrseACP_c":-1.0,
"tdeACP_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR141y"
]
},
"annotation":{
"bigg.reaction":[
"EAR141y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97854"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR160x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:0)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"palmACP_c":1.0,
"tpalm2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR160x"
]
},
"annotation":{
"bigg.reaction":[
"EAR160x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97855"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR160y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C16:0)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"palmACP_c":1.0,
"tpalm2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR160y"
]
},
"annotation":{
"bigg.reaction":[
"EAR160y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97856"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR161x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C16:1)",
"metabolites":{
"h_c":-1.0,
"hdeACP_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"t3c9palmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR161x"
]
},
"annotation":{
"bigg.reaction":[
"EAR161x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97857"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYSTRS",
"name":"Cysteinyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"cys__L_c":-1.0,
"cystrna_c":1.0,
"ppi_c":1.0,
"trnacys_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0537",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"CYSTRS"
]
},
"annotation":{
"bigg.reaction":[
"CYSTRS"
],
"ec-code":[
"6.1.1.16",
"6.1.1.15"
],
"kegg.reaction":[
"R03650"
],
"metanetx.reaction":[
"MNXR97018"
],
"reactome.reaction":[
"R-HSA-379887",
"R-HSA-380158"
],
"sabiork":[
"405"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06435"
]
}
},
{
"id":"EAR161y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C16:1)",
"metabolites":{
"h_c":-1.0,
"hdeACP_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"t3c9palmeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR161y"
]
},
"annotation":{
"bigg.reaction":[
"EAR161y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97858"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR180x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:0)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"ocdcaACP_c":1.0,
"toctd2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR180x"
]
},
"annotation":{
"bigg.reaction":[
"EAR180x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97859"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR180y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C18:0)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"ocdcaACP_c":1.0,
"toctd2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR180y"
]
},
"annotation":{
"bigg.reaction":[
"EAR180y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97860"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR181x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C18:1)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"octeACP_c":1.0,
"t3c11vaceACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR181x"
]
},
"annotation":{
"bigg.reaction":[
"EAR181x"
],
"ec-code":[
"1.3.1.9"
],
"metanetx.reaction":[
"MNXR97861"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_alaala_e",
"name":"D-Alanyl-D-alanine exchange",
"metabolites":{
"alaala_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_alaala_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_alaala_e"
],
"metanetx.reaction":[
"MNXR95679"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08099"
]
}
},
{
"id":"EAR181y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C18:1)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"octeACP_c":1.0,
"t3c11vaceACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR181y"
]
},
"annotation":{
"bigg.reaction":[
"EAR181y"
],
"ec-code":[
"1.3.1.10"
],
"metanetx.reaction":[
"MNXR97862"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ECAP3pp",
"name":"Enterobacterial common antigen polymerase (periplasm)",
"metabolites":{
"eca3und_p":-1.0,
"eca4und_p":1.0,
"h_p":1.0,
"udcpdp_p":1.0,
"unagamuf_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3928 and STM3919",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ECAP3pp"
]
},
"annotation":{
"bigg.reaction":[
"ECAP3pp"
],
"metanetx.reaction":[
"MNXR142827"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYSabc2pp",
"name":"L-cysteine export via ABC system (cytoplasm to periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cys__L_c":-1.0,
"cys__L_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0956 and STM0957",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CYSabc2pp"
]
},
"annotation":{
"bigg.reaction":[
"CYSabc2pp"
],
"biocyc":[
"META:RXN0-3"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR97026"
],
"rhea":[
"32796#2",
"32797#2",
"29783#1",
"29786#1",
"32798#2",
"29784#1",
"29785#1",
"32795#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08280"
]
}
},
{
"id":"ECAtpp",
"name":"Enterobacterial common antigen transferase (flippase, cytoplasm to periplasm)",
"metabolites":{
"unagamuf_c":-1.0,
"unagamuf_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3926",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ECAtpp"
]
},
"annotation":{
"bigg.reaction":[
"ECAtpp"
],
"biocyc":[
"META:TRANS-RXN0-279"
],
"metanetx.reaction":[
"MNXR97878"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08411"
]
}
},
{
"id":"ECOAH1",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxybutanoyl-CoA)",
"metabolites":{
"3hbcoa_c":-1.0,
"b2coa_c":1.0,
"h2o_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH1"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH1"
],
"biocyc":[
"META:RXN-11667"
],
"ec-code":[
"4.2.1.150",
"4.2.1.17",
"4.2.1.55"
],
"kegg.reaction":[
"R03026"
],
"metanetx.reaction":[
"MNXR97883"
],
"reactome.reaction":[
"R-CFA-77314",
"R-TGU-77314",
"R-RNO-77314",
"R-SCE-77314",
"R-HSA-77314",
"R-CEL-77314",
"R-DDI-77314",
"R-DRE-77314",
"R-SSC-77314",
"R-GGA-77314",
"R-XTR-77314",
"R-MMU-77314",
"R-DME-77314",
"R-BTA-77314"
],
"rhea":[
"26559",
"26558",
"26560",
"26561"
],
"sabiork":[
"2876"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02167"
]
}
},
{
"id":"EAR40x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C4:0)",
"metabolites":{
"but2eACP_c":-1.0,
"butACP_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR40x"
]
},
"annotation":{
"bigg.reaction":[
"EAR40x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97863"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR40y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C4:0)",
"metabolites":{
"but2eACP_c":-1.0,
"butACP_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR40y"
]
},
"annotation":{
"bigg.reaction":[
"EAR40y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97864"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR60x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C6:0)",
"metabolites":{
"h_c":-1.0,
"hexACP_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"thex2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR60x"
]
},
"annotation":{
"bigg.reaction":[
"EAR60x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97865"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR60y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C6:0)",
"metabolites":{
"h_c":-1.0,
"hexACP_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"thex2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR60y"
]
},
"annotation":{
"bigg.reaction":[
"EAR60y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97866"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ECOAH2",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxyhexanoyl-CoA)",
"metabolites":{
"3hhcoa_c":-1.0,
"h2o_c":1.0,
"hx2coa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH2"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH2"
],
"biocyc":[
"META:RXN-12567"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04749"
],
"metanetx.reaction":[
"MNXR97886"
],
"reactome.reaction":[
"R-HSA-77325",
"R-DME-77325",
"R-MMU-77325",
"R-RNO-77325",
"R-BTA-77325",
"R-TGU-77325",
"R-XTR-77325",
"R-CFA-77325",
"R-DDI-77325",
"R-SCE-77325",
"R-CEL-77325",
"R-DRE-77325",
"R-SSC-77325",
"R-GGA-77325"
],
"rhea":[
"30548",
"30547",
"30550",
"30549"
],
"sabiork":[
"4405"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03250"
]
}
},
{
"id":"CYSabcpp",
"name":"L-cysteine uptake via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cys__L_c":1.0,
"cys__L_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CYSabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CYSabcpp"
],
"biocyc":[
"META:TRANS-RXN-265"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR97025"
],
"rhea":[
"32798#1",
"32796#1",
"29785#2",
"29786#2",
"29783#2",
"32795#1",
"29784#2",
"32797#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05237",
"rxn08281"
]
}
},
{
"id":"ECOAH3",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxyoctanoyl-CoA)",
"metabolites":{
"3hocoa_c":-1.0,
"h2o_c":1.0,
"oc2coa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2388 or STM3983",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH3"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH3"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04746"
],
"metanetx.reaction":[
"MNXR97888"
],
"reactome.reaction":[
"R-SSC-77333",
"R-GGA-77333",
"R-RNO-77333",
"R-BTA-77333",
"R-XTR-77333",
"R-CEL-77333",
"R-MMU-77333",
"R-TGU-77333",
"R-DME-77333",
"R-HSA-77333",
"R-DDI-77333",
"R-SCE-77333",
"R-DRE-77333",
"R-CFA-77333"
],
"rhea":[
"31202",
"31200",
"31201",
"31199"
],
"sabiork":[
"4402"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03247"
]
}
},
{
"id":"ECOAH4",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxydecanoyl-CoA)",
"metabolites":{
"3hdcoa_c":-1.0,
"dc2coa_c":1.0,
"h2o_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH4"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH4"
],
"biocyc":[
"META:RXN-13616"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04744"
],
"metanetx.reaction":[
"MNXR97889"
],
"reactome.reaction":[
"R-HSA-77344",
"R-CEL-77344",
"R-CFA-77344",
"R-GGA-77344",
"R-TGU-77344",
"R-MMU-77344",
"R-DME-77344",
"R-RNO-77344",
"R-SSC-77344",
"R-DDI-77344",
"R-DRE-77344",
"R-BTA-77344",
"R-SCE-77344",
"R-XTR-77344"
],
"rhea":[
"31193",
"31191",
"31194",
"31192"
],
"sabiork":[
"4400"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03245"
]
}
},
{
"id":"EAR80x",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADH) (n-C8:0)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"ocACP_c":1.0,
"toct2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR80x"
]
},
"annotation":{
"bigg.reaction":[
"EAR80x"
],
"ec-code":[
"2.3.1.-"
],
"metanetx.reaction":[
"MNXR97867"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EAR80y",
"name":"Enoyl-[acyl-carrier-protein] reductase (NADPH) (n-C8:0)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"ocACP_c":1.0,
"toct2eACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1700",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"EAR80y"
]
},
"annotation":{
"bigg.reaction":[
"EAR80y"
],
"ec-code":[
"2.3.1.86"
],
"metanetx.reaction":[
"MNXR97868"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ECA4COLIPAtex",
"name":"Enterobacterial common antigen (x4) core oligosaccharide lipid A transport (periplasm to extracellular)",
"metabolites":{
"eca4colipa_e":1.0,
"eca4colipa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ECA4COLIPAtex"
]
},
"annotation":{
"bigg.reaction":[
"ECA4COLIPAtex"
],
"metanetx.reaction":[
"MNXR97872"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08406"
]
}
},
{
"id":"ECOAH5",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxydodecanoyl-CoA)",
"metabolites":{
"3hddcoa_c":-1.0,
"dd2coa_c":1.0,
"h2o_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH5"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH5"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04170"
],
"metanetx.reaction":[
"MNXR97890"
],
"reactome.reaction":[
"R-DDI-77256",
"R-BTA-77256",
"R-CEL-77256",
"R-CFA-77256",
"R-DME-77256",
"R-DRE-77256",
"R-RNO-77256",
"R-GGA-77256",
"R-MMU-77256",
"R-TGU-77256",
"R-XTR-77256",
"R-HSA-77256",
"R-SCE-77256",
"R-SSC-77256"
],
"rhea":[
"31078",
"31075",
"31077",
"31076"
],
"sabiork":[
"3890"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02911"
]
}
},
{
"id":"CYSIabcpp",
"name":"L cystine uptake via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cysi__L_c":1.0,
"cysi__L_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CYSIabcpp"
]
},
"annotation":{
"bigg.reaction":[
"CYSIabcpp"
],
"biocyc":[
"META:TRANS-RXN0-593"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR97003"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11080",
"rxn10415"
]
}
},
{
"id":"ECOAH6",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxytetradecanoyl-CoA)",
"metabolites":{
"3htdcoa_c":-1.0,
"h2o_c":1.0,
"td2coa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH6"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH6"
],
"biocyc":[
"META:RXN-14273"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04740"
],
"metanetx.reaction":[
"MNXR97891"
],
"reactome.reaction":[
"R-BTA-77277",
"R-TGU-77277",
"R-SSC-77277",
"R-GGA-77277",
"R-CFA-77277",
"R-DME-77277",
"R-CEL-77277",
"R-MMU-77277",
"R-HSA-77277",
"R-RNO-77277",
"R-XTR-77277"
],
"rhea":[
"31173",
"31171",
"31174",
"31172"
],
"sabiork":[
"4396"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03241"
]
}
},
{
"id":"ECA4OALpp",
"name":"Enterobacterial common antigen (x4) O-antigen ligase (periplasm)",
"metabolites":{
"colipa_p":-1.0,
"eca4colipa_p":1.0,
"eca4und_p":-1.0,
"h_p":1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3713",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ECA4OALpp"
]
},
"annotation":{
"bigg.reaction":[
"ECA4OALpp"
],
"metanetx.reaction":[
"MNXR142825"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ECAP1pp",
"name":"Enterobacterial common antigen polymerase (periplasm)",
"metabolites":{
"eca2und_p":1.0,
"h_p":1.0,
"udcpdp_p":1.0,
"unagamuf_p":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3928 and STM3919",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ECAP1pp"
]
},
"annotation":{
"bigg.reaction":[
"ECAP1pp"
],
"metanetx.reaction":[
"MNXR97874"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ECAP2pp",
"name":"Enterobacterial common antigen polymerase (periplasm)",
"metabolites":{
"eca2und_p":-1.0,
"eca3und_p":1.0,
"h_p":1.0,
"udcpdp_p":1.0,
"unagamuf_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3928 and STM3919",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ECAP2pp"
]
},
"annotation":{
"bigg.reaction":[
"ECAP2pp"
],
"metanetx.reaction":[
"MNXR142826"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ECOAH7",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxyhexadecanoyl-CoA)",
"metabolites":{
"3hhdcoa_c":-1.0,
"h2o_c":1.0,
"hdd2coa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH7"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH7"
],
"biocyc":[
"META:RXN-14272"
],
"ec-code":[
"4.2.1.17",
"4.2.1.74"
],
"kegg.reaction":[
"R04738"
],
"metanetx.reaction":[
"MNXR97892"
],
"reactome.reaction":[
"R-HSA-77301",
"R-MMU-77301",
"R-RNO-77301",
"R-TGU-77301",
"R-DME-77301",
"R-BTA-77301",
"R-CEL-77301",
"R-XTR-77301",
"R-SSC-77301",
"R-CFA-77301",
"R-GGA-77301"
],
"rhea":[
"31163",
"31166",
"31164",
"31165"
],
"sabiork":[
"4394"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03240"
]
}
},
{
"id":"ECOAH8",
"name":"3-hydroxyacyl-CoA dehydratase (3-hydroxyoctadecanoyl-CoA)",
"metabolites":{
"3hodcoa_c":-1.0,
"h2o_c":1.0,
"od2coa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ECOAH8"
]
},
"annotation":{
"bigg.reaction":[
"ECOAH8"
],
"ec-code":[
"4.2.1.134",
"4.2.1.17"
],
"metanetx.reaction":[
"MNXR97893"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08413"
]
}
},
{
"id":"EDA",
"name":"2-dehydro-3-deoxy-phosphogluconate aldolase",
"metabolites":{
"2ddg6p_c":-1.0,
"g3p_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1884",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"EDA"
]
},
"annotation":{
"bigg.reaction":[
"EDA"
],
"biocyc":[
"META:KDPGALDOL-RXN"
],
"ec-code":[
"4.1.2.14",
"4.1.2.55"
],
"kegg.reaction":[
"R05605"
],
"metanetx.reaction":[
"MNXR97897"
],
"rhea":[
"17092",
"17091",
"17089",
"17090"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03884"
]
}
},
{
"id":"CYStex",
"name":"L-cysteine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cys__L_e":-1.0,
"cys__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CYStex"
]
},
"annotation":{
"bigg.reaction":[
"CYStex"
],
"biocyc":[
"META:RXN0-1924"
],
"metanetx.reaction":[
"MNXR97029"
],
"rhea":[
"29655",
"29656",
"29658",
"29657"
],
"sabiork":[
"13465"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08284",
"rxn10998",
"rxn08286"
]
}
},
{
"id":"EDD",
"name":"6-phosphogluconate dehydratase",
"metabolites":{
"2ddg6p_c":1.0,
"6pgc_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1885",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"EDD"
]
},
"annotation":{
"bigg.reaction":[
"EDD"
],
"biocyc":[
"META:PGLUCONDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.12"
],
"kegg.reaction":[
"R02036"
],
"metanetx.reaction":[
"MNXR97898"
],
"rhea":[
"17280",
"17278",
"17277",
"17279"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01477"
]
}
},
{
"id":"EDTXS1",
"name":"Endotoxin Synthesis (lauroyl transferase)",
"metabolites":{
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"kdo2lipid4L_c":1.0,
"kdo2lipid4_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1155",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"EDTXS1"
]
},
"annotation":{
"bigg.reaction":[
"EDTXS1"
],
"ec-code":[
"2.3.1.241"
],
"metanetx.reaction":[
"MNXR97899"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYSItex",
"name":"L cystine transport via diffusion extracellular to periplasm ",
"metabolites":{
"cysi__L_e":-1.0,
"cysi__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CYSItex"
]
},
"annotation":{
"bigg.reaction":[
"CYSItex"
],
"biocyc":[
"META:TRANS-RXN0-507"
],
"metanetx.reaction":[
"MNXR97004"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EDTXS2",
"name":"Endotoxin Synthesis (myristoyl transferase)",
"metabolites":{
"ACP_c":1.0,
"kdo2lipid4L_c":-1.0,
"lipa_c":1.0,
"myrsACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1889",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"EDTXS2"
]
},
"annotation":{
"bigg.reaction":[
"EDTXS2"
],
"ec-code":[
"2.3.1.243"
],
"metanetx.reaction":[
"MNXR97901"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EDTXS3",
"name":"Endotoxin Synthesis (palmitoleoyl ACP)",
"metabolites":{
"ACP_c":1.0,
"hdeACP_c":-1.0,
"kdo2lipid4_c":-1.0,
"kdo2lipid4p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2401",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"EDTXS3"
]
},
"annotation":{
"bigg.reaction":[
"EDTXS3"
],
"metanetx.reaction":[
"MNXR97903"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYStpp",
"name":"L-cysteine export via facilitated transport",
"metabolites":{
"cys__L_c":-1.0,
"cys__L_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2645 or STM1517",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CYStpp"
]
},
"annotation":{
"bigg.reaction":[
"CYStpp"
],
"biocyc":[
"META:RXN0-1924"
],
"metanetx.reaction":[
"MNXR97029"
],
"rhea":[
"29655",
"29656",
"29658",
"29657"
],
"sabiork":[
"13465"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08284",
"rxn10998",
"rxn08286"
]
}
},
{
"id":"EDTXS4",
"name":"Endotoxin Synthesis (myristoyl transferase)",
"metabolites":{
"ACP_c":1.0,
"kdo2lipid4p_c":-1.0,
"lipa_cold_c":1.0,
"myrsACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1889",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"EDTXS4"
]
},
"annotation":{
"bigg.reaction":[
"EDTXS4"
],
"metanetx.reaction":[
"MNXR97904"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ENLIPAtex",
"name":"Phosphoethanolamine lipid A transport via vector (periplasm to extracellular)",
"metabolites":{
"enlipa_e":1.0,
"enlipa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ENLIPAtex"
]
},
"annotation":{
"bigg.reaction":[
"ENLIPAtex"
],
"metanetx.reaction":[
"MNXR97923"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08419"
]
}
},
{
"id":"CYTBO3_4pp",
"name":"Cytochrome oxidase bo3 (ubiquinol-8: 4 protons) (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h_c":-4.0,
"h_p":4.0,
"o2_c":-0.5,
"q8_c":1.0,
"q8h2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0440 and STM0441 and STM0442 and STM0443",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CYTBO3_4pp"
]
},
"annotation":{
"bigg.reaction":[
"CYTBO3_4pp"
],
"metanetx.reaction":[
"MNXR97036"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_all__D_e",
"name":"D-Allose exchange",
"metabolites":{
"all__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_all_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_all__D_e"
],
"metanetx.reaction":[
"MNXR95776"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08115"
]
}
},
{
"id":"ENO",
"name":"Enolase",
"metabolites":{
"2pg_c":-1.0,
"h2o_c":1.0,
"pep_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2952",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"ENO"
]
},
"annotation":{
"bigg.reaction":[
"ENO"
],
"biocyc":[
"META:2PGADEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.11"
],
"kegg.reaction":[
"R00658"
],
"metanetx.reaction":[
"MNXR97932"
],
"reactome.reaction":[
"R-BTA-71660",
"R-RNO-70494",
"R-TGU-71660",
"R-SSC-71660",
"R-GGA-352981",
"R-DME-70494",
"R-CFA-70494",
"R-OSA-70494",
"R-SCE-71660",
"R-GGA-353044",
"R-CFA-71660",
"R-GGA-70494",
"R-PFA-71660",
"R-SPO-71660",
"R-SPO-70494",
"R-DDI-70494",
"R-RNO-71660",
"R-MMU-70494",
"R-ATH-70494",
"R-SCE-70494",
"R-SSC-70494",
"R-HSA-70494",
"R-DME-71660",
"R-CEL-71660",
"R-HSA-71660",
"R-TGU-70494",
"R-XTR-71660",
"R-DRE-70494",
"R-DRE-71660",
"R-MMU-71660",
"R-ATH-71660",
"R-BTA-70494",
"R-CEL-70494",
"R-XTR-70494",
"R-DDI-71660",
"R-OSA-71660",
"R-PFA-70494",
"R-GGA-71660"
],
"rhea":[
"10166",
"10165",
"10164",
"10167"
],
"sabiork":[
"8"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00459"
]
}
},
{
"id":"CYTD",
"name":"Cytidine deaminase",
"metabolites":{
"cytd_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0,
"uri_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2183",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"CYTD"
]
},
"annotation":{
"bigg.reaction":[
"CYTD"
],
"biocyc":[
"META:CYTIDEAM2-RXN"
],
"ec-code":[
"3.5.4.5"
],
"kegg.reaction":[
"R01878"
],
"metanetx.reaction":[
"MNXR97039"
],
"rhea":[
"16069",
"16070",
"16072",
"16071"
],
"sabiork":[
"89"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01368"
]
}
},
{
"id":"CYTDH",
"name":"Cytidine hydrolase",
"metabolites":{
"csn_c":1.0,
"cytd_c":-1.0,
"h2o_c":-1.0,
"rib__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0661 or STM0051",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"CYTDH"
]
},
"annotation":{
"bigg.reaction":[
"CYTDH"
],
"biocyc":[
"META:RXN0-361"
],
"ec-code":[
"3.2.2.3",
"3.2.2.8"
],
"kegg.reaction":[
"R02137"
],
"metanetx.reaction":[
"MNXR97040"
],
"rhea":[
"27958",
"27959",
"27960",
"27961"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01541"
]
}
},
{
"id":"CYTDK2",
"name":"Cytidine kinase (GTP)",
"metabolites":{
"cmp_c":1.0,
"cytd_c":-1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2122",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"CYTDK2"
]
},
"annotation":{
"bigg.reaction":[
"CYTDK2"
],
"biocyc":[
"META:CYTIDINEKIN-RXN"
],
"ec-code":[
"2.7.1.48",
"2.7.1.213"
],
"kegg.reaction":[
"R00517"
],
"metanetx.reaction":[
"MNXR97042"
],
"rhea":[
"28165",
"28164",
"28162",
"28163"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00369"
]
}
},
{
"id":"ENTCS",
"name":"Enterochelin synthase",
"metabolites":{
"23dhba_c":-3.0,
"amp_c":6.0,
"enter_c":1.0,
"h_c":9.0,
"seramp_c":-3.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0584",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ENTCS"
]
},
"annotation":{
"bigg.reaction":[
"ENTCS"
],
"metanetx.reaction":[
"MNXR97933"
],
"rhea":[
"28566",
"28569",
"28568",
"28567"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08420",
"rxn13827"
]
}
},
{
"id":"ETHAAL",
"name":"Ethanolamine ammonia-lyase",
"metabolites":{
"acald_c":1.0,
"etha_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2457 and STM2458",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"ETHAAL"
]
},
"annotation":{
"bigg.reaction":[
"ETHAAL"
],
"biocyc":[
"META:ETHAMLY-RXN"
],
"ec-code":[
"4.3.1.7"
],
"kegg.reaction":[
"R00749"
],
"metanetx.reaction":[
"MNXR97968"
],
"rhea":[
"15313",
"15314",
"15316",
"15315"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00539"
]
}
},
{
"id":"EX_alltn_e",
"name":"Allantoin exchange",
"metabolites":{
"alltn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_alltn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_alltn_e"
],
"biocyc":[
"META:TRANS-RXN0-557"
],
"metanetx.reaction":[
"MNXR95771"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08117",
"rxn09698"
]
}
},
{
"id":"EX_amp_e",
"name":"AMP exchange",
"metabolites":{
"amp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_amp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_amp_e"
],
"metanetx.reaction":[
"MNXR95830"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08134",
"rxn13227"
]
}
},
{
"id":"CYTDt2pp_copy1",
"name":"Cytidine transport in via proton symport (periplasm)",
"metabolites":{
"cytd_c":1.0,
"cytd_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113 or STM2409",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CYTDt2pp",
"CYTDt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"CYTDt2pp"
],
"biocyc":[
"META:TRANS-RXN-108B"
],
"metanetx.reaction":[
"MNXR97044"
],
"rhea":[
"29986",
"29984",
"29985",
"29983"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08289",
"rxn05198"
]
}
},
{
"id":"EX_anhgm_e",
"name":"N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramic acid exchange",
"metabolites":{
"anhgm_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_anhgm_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_anhgm_e"
],
"metanetx.reaction":[
"MNXR95839"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08135"
]
}
},
{
"id":"EX_arab__L_e",
"name":"L-Arabinose exchange",
"metabolites":{
"arab__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_arab_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_arab__L_e"
],
"metanetx.reaction":[
"MNXR95913"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ETHAt2pp",
"name":"Ethanolamine transport in via proton symport",
"metabolites":{
"etha_c":1.0,
"etha_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2460",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ETHAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"ETHAt2pp"
],
"metanetx.reaction":[
"MNXR97975"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08423",
"rxn05551"
]
}
},
{
"id":"ETHAtex",
"name":"Ethanolamine transport via diffusion (extracellular)",
"metabolites":{
"etha_e":-1.0,
"etha_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ETHAtex"
]
},
"annotation":{
"bigg.reaction":[
"ETHAtex"
],
"biocyc":[
"META:TRANS-RXN0-476"
],
"metanetx.reaction":[
"MNXR97974"
],
"rhea":[
"32750",
"32749",
"32747",
"32748"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08424",
"rxn10841"
]
}
},
{
"id":"ETHSO3tex",
"name":"Ethanesulfonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ethso3_e":-1.0,
"ethso3_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ETHSO3tex"
]
},
"annotation":{
"bigg.reaction":[
"ETHSO3tex"
],
"metanetx.reaction":[
"MNXR97978"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08426"
]
}
},
{
"id":"ETOHt2rpp",
"name":"Ethanol reversible transport via proton symport (periplasm)",
"metabolites":{
"etoh_c":1.0,
"etoh_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ETOHt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ETOHt2rpp"
],
"metanetx.reaction":[
"MNXR97981"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10146",
"rxn08427"
]
}
},
{
"id":"CYTDt2pp_copy2",
"name":"Cytidine transport in via proton symport (periplasm)",
"metabolites":{
"cytd_c":1.0,
"cytd_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2421",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CYTDt2pp",
"CYTDt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"CYTDt2pp"
],
"biocyc":[
"META:TRANS-RXN-108B"
],
"metanetx.reaction":[
"MNXR97044"
],
"rhea":[
"29986",
"29984",
"29985",
"29983"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08289",
"rxn05198"
]
}
},
{
"id":"ETOHtex",
"name":"Ethanol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"etoh_e":-1.0,
"etoh_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ETOHtex"
]
},
"annotation":{
"bigg.reaction":[
"ETOHtex"
],
"biocyc":[
"META:TRANS-RXN0-546"
],
"metanetx.reaction":[
"MNXR97980"
],
"rhea":[
"35269",
"35267",
"35270",
"35268"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09683",
"rxn08428",
"rxn09764"
]
}
},
{
"id":"EX_arbtn_e",
"name":"Aerobactin minus Fe3 exchange",
"metabolites":{
"arbtn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_arbtn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_arbtn_e"
],
"metanetx.reaction":[
"MNXR142929"
],
"sbo":"SBO:0000627"
}
},
{
"id":"CYTDtex",
"name":"Cytidine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"cytd_e":-1.0,
"cytd_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"CYTDtex"
]
},
"annotation":{
"bigg.reaction":[
"CYTDtex"
],
"metanetx.reaction":[
"MNXR97043"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13338",
"rxn08290",
"rxn10997"
]
}
},
{
"id":"EX_arbtn_fe3_e",
"name":"Aerobactin exchange",
"metabolites":{
"arbtn_fe3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_arbtn_fe3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_arbtn_fe3_e"
],
"metanetx.reaction":[
"MNXR142930"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_chitob_e",
"name":"Chitobiose exchange",
"metabolites":{
"chitob_e":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_chitob_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_chitob_e"
],
"biocyc":[
"META:TRANS-RXN0-445"
],
"metanetx.reaction":[
"MNXR96716"
],
"rhea":[
"35051",
"35054",
"35052",
"35053"
],
"sbo":"SBO:0000627"
}
},
{
"id":"CYTK1",
"name":"Cytidylate kinase (CMP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cdp_c":1.0,
"cmp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0980",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"CYTK1"
]
},
"annotation":{
"bigg.reaction":[
"CYTK1"
],
"biocyc":[
"META:RXN-11832"
],
"ec-code":[
"2.7.4.25",
"2.7.4.14"
],
"kegg.reaction":[
"R00512"
],
"metanetx.reaction":[
"MNXR97047"
],
"rhea":[
"11603",
"11601",
"11602",
"11600"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00364"
]
}
},
{
"id":"EX_pydxn_e",
"name":"Pyridoxine exchange",
"metabolites":{
"pydxn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pydxn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pydxn_e"
],
"biocyc":[
"META:TRANS-RXN0-205"
],
"metanetx.reaction":[
"MNXR103364"
],
"rhea":[
"28472",
"28470",
"28473",
"28471"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13097"
]
}
},
{
"id":"EX_pydx_e",
"name":"Pyridoxal exchange",
"metabolites":{
"pydx_e":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pydx_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pydx_e"
],
"biocyc":[
"META:TRANS-RXN0-214"
],
"metanetx.reaction":[
"MNXR103370"
],
"rhea":[
"28462",
"28465",
"28463",
"28464"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12666"
]
}
},
{
"id":"EX_arg__L_e",
"name":"L-Arginine exchange",
"metabolites":{
"arg__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_arg_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_arg__L_e"
],
"biocyc":[
"META:RXN66-448"
],
"metanetx.reaction":[
"MNXR95951"
],
"rhea":[
"32145",
"32143",
"32144",
"32146"
],
"sabiork":[
"7983"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10840",
"rxn08155"
]
}
},
{
"id":"EX_ascb__L_e",
"name":"L-Ascorbate exchange",
"metabolites":{
"ascb__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ascb_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ascb__L_e"
],
"metanetx.reaction":[
"MNXR138070"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08159"
]
}
},
{
"id":"EX_asn__L_e",
"name":"L-Asparagine exchange",
"metabolites":{
"asn__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_asn_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_asn__L_e"
],
"metanetx.reaction":[
"MNXR96069"
],
"sabiork":[
"13466"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05220",
"rxn08162"
]
}
},
{
"id":"EX_12ppd__R_e",
"name":"(R)-Propane-1,2-diol exchange",
"metabolites":{
"12ppd__R_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_12ppd_R_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_12ppd__R_e"
],
"biocyc":[
"META:TRANS-RXN0-467"
],
"metanetx.reaction":[
"MNXR94683"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07920",
"rxn07919"
]
}
},
{
"id":"CYTK2",
"name":"Cytidylate kinase (dCMP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dcdp_c":1.0,
"dcmp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0980",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"CYTK2"
]
},
"annotation":{
"bigg.reaction":[
"CYTK2"
],
"biocyc":[
"META:RXN-7913"
],
"ec-code":[
"2.7.4.13",
"2.7.4.14",
"2.7.4.25"
],
"kegg.reaction":[
"R01665"
],
"metanetx.reaction":[
"MNXR97053"
],
"rhea":[
"25096",
"25094",
"25097",
"25095"
],
"sabiork":[
"84"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01219"
]
}
},
{
"id":"EX_aso3_e",
"name":"Arsenite exchange",
"metabolites":{
"aso3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_aso3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_aso3_e"
],
"biocyc":[
"META:TRANS-RXN0-551"
],
"metanetx.reaction":[
"MNXR96073"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05507",
"rxn08164"
]
}
},
{
"id":"EX_asp__L_e",
"name":"L-Aspartate exchange",
"metabolites":{
"asp__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_asp_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_asp__L_e"
],
"biocyc":[
"META:TRANS-RXN0-554"
],
"metanetx.reaction":[
"MNXR96107"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10906",
"rxn08170",
"rxn13232"
]
}
},
{
"id":"EX_12ppd__S_e",
"name":"(S)-Propane-1,2-diol exchange",
"metabolites":{
"12ppd__S_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_12ppd_S_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_12ppd__S_e"
],
"metanetx.reaction":[
"MNXR94684"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_but_e",
"name":"Butyrate (n-C4:0) exchange",
"metabolites":{
"but_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_but_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_but_e"
],
"metanetx.reaction":[
"MNXR96352"
],
"sbo":"SBO:0000627"
}
},
{
"id":"DAAD",
"name":"D-Amino acid dehydrogenase",
"metabolites":{
"ala__D_c":-1.0,
"fad_c":-1.0,
"fadh2_c":1.0,
"h2o_c":-1.0,
"nh4_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1803",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"DAAD"
]
},
"annotation":{
"bigg.reaction":[
"DAAD"
],
"ec-code":[
"1.4.99.1"
],
"metanetx.reaction":[
"MNXR97073"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08291"
]
}
},
{
"id":"EX_14glucan_e",
"name":"1,4-alpha-D-glucan exchange",
"metabolites":{
"14glucan_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_14glucan_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_14glucan_e"
],
"ec-code":[
"2.4.1.161"
],
"metanetx.reaction":[
"MNXR94694"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_15dap_e",
"name":"1,5-Diaminopentane exchange",
"metabolites":{
"15dap_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_15dap_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_15dap_e"
],
"metanetx.reaction":[
"MNXR97147"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08305"
]
}
},
{
"id":"EX_butso3_e",
"name":"Butanesulfonate exchange",
"metabolites":{
"butso3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_butso3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_butso3_e"
],
"metanetx.reaction":[
"MNXR96351"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08182"
]
}
},
{
"id":"DADA",
"name":"Deoxyadenosine deaminase",
"metabolites":{
"dad_2_c":-1.0,
"din_c":1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1463",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DADA"
]
},
"annotation":{
"bigg.reaction":[
"DADA"
],
"biocyc":[
"META:ADDALT-RXN"
],
"ec-code":[
"3.5.4.4"
],
"kegg.reaction":[
"R02556"
],
"metanetx.reaction":[
"MNXR97076"
],
"rhea":[
"28193",
"28190",
"28192",
"28191"
],
"sabiork":[
"281"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01858"
]
}
},
{
"id":"EX_ca2_e",
"name":"Calcium exchange",
"metabolites":{
"ca2_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ca2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ca2_e"
],
"biocyc":[
"META:TRANS-RXN0-497",
"META:TRANS-RXN-144"
],
"ec-code":[
"3.6.3.8"
],
"metanetx.reaction":[
"MNXR96436"
],
"reactome.reaction":[
"R-HSA-210420",
"R-GGA-139855",
"R-HSA-432164",
"R-HSA-8863009",
"R-DME-2089943",
"R-CEL-2089943",
"R-CFA-3295579",
"R-TGU-5577213",
"R-SSC-2685505",
"R-RNO-210420",
"R-RNO-418309",
"R-TGU-5263618",
"R-DME-139854",
"R-SCE-418309",
"R-SSC-2534359",
"R-SSC-5263618",
"R-DRE-5263618",
"R-GGA-265645",
"R-RNO-3295579",
"R-ATH-2685505",
"R-TGU-265645",
"R-XTR-5263618",
"R-XTR-139854",
"R-XTR-418309",
"R-MMU-5263618",
"R-TGU-139854",
"R-GGA-418309",
"R-SSC-139854",
"R-CFA-418309",
"R-CEL-432164",
"R-SSC-2855020",
"R-DME-432164",
"R-DRE-139855",
"R-CEL-3295579",
"R-CFA-2089943",
"R-CFA-265645",
"R-GGA-432164",
"R-RNO-432164",
"R-MMU-2089943",
"R-GGA-2855020",
"R-CFA-2534359",
"R-RNO-182097",
"R-SSC-139855",
"R-CEL-139854",
"R-DRE-432164",
"R-SSC-418309",
"R-RNO-139854",
"R-DME-3295579",
"R-TGU-3295579",
"R-HSA-5263618",
"R-DDI-2685505",
"R-HSA-2534359",
"R-TGU-139855",
"R-XTR-5577213",
"R-CFA-5577213",
"R-DDI-3295579",
"R-HSA-2685505",
"R-XTR-210420",
"R-HSA-3295579",
"R-HSA-2855020",
"R-GGA-210420",
"R-DRE-2089943",
"R-CFA-2855020",
"R-RNO-139855",
"R-DME-418309",
"R-MMU-432164",
"R-BTA-139855",
"R-HSA-139854",
"R-DDI-418309",
"R-HSA-5577213",
"R-GGA-2089943",
"R-BTA-139854",
"R-CFA-2685505",
"R-MMU-2855020",
"R-HSA-418309",
"R-BTA-5577213",
"R-HSA-434798",
"R-XTR-2089943",
"R-BTA-2685505",
"R-MMU-418309",
"R-SSC-210420",
"R-HSA-169683",
"R-SSC-2089943",
"R-DRE-5577213",
"R-ATH-418309",
"R-RNO-2089943",
"R-RNO-265645",
"R-BTA-2855020",
"R-XTR-3295579",
"R-MMU-2685505",
"R-MMU-265645",
"R-CFA-139855",
"R-TGU-2685505",
"R-CFA-139854",
"R-CEL-418309",
"R-GGA-2685505",
"R-GGA-139854",
"R-XTR-2855020",
"R-BTA-265645",
"R-RNO-5263618",
"R-SSC-3295579",
"R-HSA-2089943",
"R-TGU-2855020",
"R-BTA-418309",
"R-DRE-139854",
"R-DRE-265645",
"R-GGA-3295579",
"R-XTR-2685505",
"R-BTA-2089943",
"R-MMU-210420",
"R-XTR-139855",
"R-SSC-265645",
"R-CFA-210420",
"R-XTR-265645",
"R-DME-434802",
"R-TGU-418309",
"R-MMU-3295579",
"R-RNO-2855020",
"R-SSC-5577213",
"R-OSA-2685505",
"R-HSA-4420052",
"R-DRE-2855020",
"R-BTA-5263618",
"R-GGA-5263618",
"R-CEL-5263618",
"R-RNO-2685505",
"R-GGA-5577213",
"R-BTA-210420",
"R-DRE-3295579",
"R-HSA-139855",
"R-DRE-210420",
"R-DRE-2685505",
"R-RNO-2534359",
"R-TGU-2089943",
"R-CFA-5263618",
"R-MMU-2534359",
"R-TGU-432164",
"R-BTA-2534359",
"R-MMU-139855",
"R-MMU-5577213",
"R-CFA-432164",
"R-XTR-432164",
"R-CEL-265645",
"R-SPO-418309",
"R-RNO-5577213",
"R-HSA-265645",
"R-OSA-418309",
"R-DRE-418309",
"R-BTA-3295579",
"R-TGU-210420",
"R-MMU-139854",
"R-SSC-432164",
"R-BTA-432164",
"R-DME-5263618"
],
"rhea":[
"29671",
"29674",
"29673",
"29672"
],
"sabiork":[
"12376"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08186"
]
}
},
{
"id":"EX_cbi_e",
"name":"Cobinamide exchange",
"metabolites":{
"cbi_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cbi_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cbi_e"
],
"biocyc":[
"META:TRANS-RXN0-283"
],
"metanetx.reaction":[
"MNXR124011"
],
"rhea":[
"29695",
"29697",
"29696",
"29698"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_cbl1_e",
"name":"Cob(I)alamin exchange",
"metabolites":{
"cbl1_e":-1.0
},
"lower_bound":-0.01,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cbl1_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cbl1_e"
],
"biocyc":[
"META:RXN0-1565"
],
"metanetx.reaction":[
"MNXR123114"
],
"rhea":[
"29722",
"29720",
"29721",
"29719"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_23camp_e",
"name":"2',3'-Cyclic AMP exchange",
"metabolites":{
"23camp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_23camp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_23camp_e"
],
"metanetx.reaction":[
"MNXR94718"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07925"
]
}
},
{
"id":"EX_23ccmp_e",
"name":"2',3'-Cyclic CMP exchange",
"metabolites":{
"23ccmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_23ccmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_23ccmp_e"
],
"metanetx.reaction":[
"MNXR94720"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07926"
]
}
},
{
"id":"EX_23cgmp_e",
"name":"2',3'-Cyclic GMP exchange",
"metabolites":{
"23cgmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_23cgmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_23cgmp_e"
],
"metanetx.reaction":[
"MNXR94721"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07927"
]
}
},
{
"id":"EX_cd2_e",
"name":"Cadmium exchange",
"metabolites":{
"cd2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cd2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cd2_e"
],
"biocyc":[
"META:RXN0-10"
],
"metanetx.reaction":[
"MNXR96499"
],
"rhea":[
"28709",
"28708",
"28707",
"28710"
],
"sabiork":[
"13041"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08198",
"rxn08197"
]
}
},
{
"id":"EX_23cump_e",
"name":"2',3'-Cyclic UMP exchange",
"metabolites":{
"23cump_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_23cump_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_23cump_e"
],
"metanetx.reaction":[
"MNXR94726"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07928"
]
}
},
{
"id":"DADK",
"name":"Deoxyadenylate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dadp_c":1.0,
"damp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"DADK"
]
},
"annotation":{
"bigg.reaction":[
"DADK"
],
"biocyc":[
"META:DEOXYADENYLATE-KINASE-RXN"
],
"ec-code":[
"2.7.4.11",
"2.7.4.13",
"2.7.4.3"
],
"kegg.reaction":[
"R01547"
],
"metanetx.reaction":[
"MNXR96117"
],
"reactome.reaction":[
"R-DME-74220",
"R-BTA-74220",
"R-MMU-110141",
"R-PFA-74220",
"R-TGU-110141",
"R-SCE-74220",
"R-HSA-110141",
"R-XTR-110141",
"R-CFA-110141",
"R-CEL-110141",
"R-HSA-74220",
"R-BTA-110141",
"R-CFA-74220",
"R-SSC-110141",
"R-CEL-74220",
"R-DRE-74220",
"R-SCE-110141",
"R-DRE-110141",
"R-GGA-110141",
"R-RNO-110141",
"R-SSC-74220",
"R-DME-110141",
"R-MMU-74220",
"R-PFA-110141",
"R-XTR-74220",
"R-TGU-74220",
"R-GGA-74220",
"R-RNO-74220"
],
"rhea":[
"23100",
"23103",
"23102",
"23101"
],
"sabiork":[
"314"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01127"
]
}
},
{
"id":"EX_23dappa_e",
"name":"2,3-diaminopropionate exchange",
"metabolites":{
"23dappa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_23dappa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_23dappa_e"
],
"metanetx.reaction":[
"MNXR94728"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07930"
]
}
},
{
"id":"EX_26dap__M_e",
"name":"Meso-2,6-Diaminoheptanedioate exchange",
"metabolites":{
"26dap__M_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_26dap_M_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_26dap__M_e"
],
"metanetx.reaction":[
"MNXR94741"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07931"
]
}
},
{
"id":"EX_cgly_e",
"name":"Cys-Gly exchange",
"metabolites":{
"cgly_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cgly_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cgly_e"
],
"metanetx.reaction":[
"MNXR96658"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08211"
]
}
},
{
"id":"EX_chol_e",
"name":"Choline exchange",
"metabolites":{
"chol_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_chol_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_chol_e"
],
"biocyc":[
"META:TRANS-RXN-319"
],
"metanetx.reaction":[
"MNXR96693"
],
"reactome.reaction":[
"R-GGA-6797956",
"R-DDI-6797956",
"R-XTR-444433",
"R-CFA-6797956",
"R-SSC-6797956",
"R-HSA-444433",
"R-OSA-444433",
"R-MMU-6797956",
"R-DME-444433",
"R-GGA-444433",
"R-MMU-444433",
"R-DDI-444433",
"R-SCE-444433",
"R-SSC-444433",
"R-TGU-6797956",
"R-OSA-6797956",
"R-DME-6797956",
"R-ATH-444433",
"R-HSA-6797956",
"R-XTR-6797956",
"R-ATH-6797956",
"R-CEL-444433",
"R-BTA-444433",
"R-RNO-6797956",
"R-SCE-6797956",
"R-RNO-444433",
"R-BTA-6797956",
"R-TGU-444433",
"R-DRE-444433",
"R-CFA-444433",
"R-DRE-6797956"
],
"rhea":[
"32753",
"32754",
"32752",
"32751"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08214"
]
}
},
{
"id":"EX_cit_e",
"name":"Citrate exchange",
"metabolites":{
"cit_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cit_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cit_e"
],
"metanetx.reaction":[
"MNXR96756"
],
"rhea":[
"33184",
"33186",
"33183",
"33185"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10946",
"rxn08217"
]
}
},
{
"id":"EX_2ddglcn_e",
"name":"2-Dehydro-3-deoxy-D-gluconate exchange",
"metabolites":{
"2ddglcn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_2ddglcn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_2ddglcn_e"
],
"metanetx.reaction":[
"MNXR138208"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08320"
]
}
},
{
"id":"DADNt2pp",
"name":"Deoxyadenosine transport in via proton symport (periplasm)",
"metabolites":{
"dad_2_c":1.0,
"dad_2_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2409 or STM3113",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DADNt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DADNt2pp"
],
"biocyc":[
"META:TRANS-RXN-108C"
],
"metanetx.reaction":[
"MNXR97080"
],
"rhea":[
"29982",
"29979",
"29981",
"29980"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05317",
"rxn08292"
]
}
},
{
"id":"EX_34dhpac_e",
"name":"3,4-Dihydroxyphenylacetaldehyde exchange",
"metabolites":{
"34dhpac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_34dhpac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_34dhpac_e"
],
"metanetx.reaction":[
"MNXR94848"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07972"
]
}
},
{
"id":"EX_3amp_e",
"name":"3'-AMP exchange",
"metabolites":{
"3amp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3amp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3amp_e"
],
"metanetx.reaction":[
"MNXR94857"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07973"
]
}
},
{
"id":"EX_3cmp_e",
"name":"3'-cmp exchange",
"metabolites":{
"3cmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3cmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3cmp_e"
],
"metanetx.reaction":[
"MNXR94861"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07974"
]
}
},
{
"id":"EX_3gmp_e",
"name":"3'-GMP exchange",
"metabolites":{
"3gmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3gmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3gmp_e"
],
"metanetx.reaction":[
"MNXR94868"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn07975"
]
}
},
{
"id":"EX_icit_e",
"name":"Isocitrate exchange",
"metabolites":{
"icit_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_icit_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_icit_e"
],
"metanetx.reaction":[
"MNXR100788"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12803"
]
}
},
{
"id":"EX_acon_C_e",
"name":"Cisaconitate exchange",
"metabolites":{
"acon_C_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acon_C_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acon_C_e"
],
"metanetx.reaction":[
"MNXR95381"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12788"
]
}
},
{
"id":"EX_cl_e",
"name":"Chloride exchange",
"metabolites":{
"cl_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cl_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cl_e"
],
"biocyc":[
"META:TRANS-RXN-139"
],
"metanetx.reaction":[
"MNXR96797"
],
"reactome.reaction":[
"R-TGU-975340",
"R-OSA-2684901",
"R-RNO-2744228",
"R-DDI-2744228",
"R-HSA-2744228",
"R-SSC-975449",
"R-CFA-2744242",
"R-CFA-975449",
"R-GGA-975389",
"R-TGU-975449",
"R-HSA-2684901",
"R-DRE-2744349",
"R-RNO-975449",
"R-GGA-427570",
"R-XTR-2684901",
"R-SSC-2744349",
"R-BTA-2684901",
"R-HSA-427570",
"R-TGU-975389",
"R-BTA-2744349",
"R-DME-2684901",
"R-SSC-2684901",
"R-SSC-975389",
"R-BTA-975389",
"R-MMU-975389",
"R-TGU-2744242",
"R-DME-2744242",
"R-CEL-975340",
"R-PFA-427570",
"R-GGA-975449",
"R-XTR-427570",
"R-CFA-975389",
"R-DRE-975449",
"R-SSC-427570",
"R-XTR-2744349",
"R-CEL-427570",
"R-DME-2744349",
"R-HSA-2744242",
"R-GGA-2744228",
"R-SSC-975340",
"R-BTA-2744228",
"R-CEL-975389",
"R-HSA-975340",
"R-DME-975389",
"R-DRE-2684901",
"R-RNO-2744242",
"R-MMU-975449",
"R-CFA-427570",
"R-DME-427570",
"R-HSA-975449",
"R-SSC-2744242",
"R-DRE-2744228",
"R-DRE-2744242",
"R-RNO-975340",
"R-GGA-2744242",
"R-RNO-2744361",
"R-MMU-2744361",
"R-BTA-975340",
"R-SCE-427570",
"R-OSA-427570",
"R-GGA-975340",
"R-RNO-427570",
"R-XTR-975340",
"R-MMU-2684901",
"R-CFA-2744361",
"R-CFA-975340",
"R-MMU-2744242",
"R-RNO-2744349",
"R-TGU-2744228",
"R-DME-2744228",
"R-DRE-2744361",
"R-BTA-427570",
"R-SSC-2744228",
"R-SSC-2744361",
"R-DDI-427570",
"R-CEL-2684901",
"R-MMU-2744349",
"R-CFA-2744228",
"R-MMU-975340",
"R-XTR-2744228",
"R-XTR-2744361",
"R-BTA-975449",
"R-SPO-2684901",
"R-ATH-427570",
"R-TGU-427570",
"R-BTA-2744242",
"R-CFA-2744349",
"R-GGA-2684901",
"R-DDI-2684901",
"R-CFA-2684901",
"R-DRE-975389",
"R-MMU-2744228",
"R-RNO-975389",
"R-HSA-2744349",
"R-BTA-2744361",
"R-GGA-2744361",
"R-RNO-2684901",
"R-XTR-975449",
"R-TGU-2684901",
"R-CEL-2744228",
"R-DRE-975340",
"R-XTR-975389",
"R-DME-2744361",
"R-HSA-975389",
"R-MMU-427570",
"R-HSA-2744361",
"R-CEL-2744361",
"R-TGU-2744361",
"R-XTR-2744242",
"R-DME-975340",
"R-SCE-2744228",
"R-ATH-2684901"
],
"rhea":[
"29823",
"29824",
"29826",
"29825"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10473",
"rxn08234"
]
}
},
{
"id":"EX_cmp_e",
"name":"CMP exchange",
"metabolites":{
"cmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cmp_e"
],
"metanetx.reaction":[
"MNXR96806"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08236",
"rxn09776"
]
}
},
{
"id":"EX_co2_e",
"name":"CO2 exchange",
"metabolites":{
"co2_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_co2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_co2_e"
],
"biocyc":[
"META:TRANS-RXN0-545"
],
"metanetx.reaction":[
"MNXR96810"
],
"reactome.reaction":[
"R-DDI-1247645",
"R-CFA-1237069",
"R-TGU-1247649",
"R-CFA-1237042",
"R-CEL-1247645",
"R-XTR-1237069",
"R-HSA-1247645",
"R-OSA-1237042",
"R-GGA-1237042",
"R-BTA-1247645",
"R-GGA-1247649",
"R-RNO-1247645",
"R-XTR-1247645",
"R-TGU-1237042",
"R-SCE-1247649",
"R-MMU-1247649",
"R-CFA-1247649",
"R-GGA-1247645",
"R-SSC-1247645",
"R-BTA-1237069",
"R-RNO-1237069",
"R-SCE-1237042",
"R-DDI-1247649",
"R-SSC-1237042",
"R-DRE-1247649",
"R-DRE-1237042",
"R-DDI-1237042",
"R-DME-1237042",
"R-MMU-1237042",
"R-SSC-1247649",
"R-TGU-1237069",
"R-BTA-1247649",
"R-CFA-1247645",
"R-RNO-1247649",
"R-HSA-1237069",
"R-CEL-1237069",
"R-DDI-1237069",
"R-MMU-1237069",
"R-DME-1247645",
"R-ATH-1237042",
"R-OSA-1247649",
"R-HSA-1237042",
"R-DRE-1247645",
"R-HSA-1247649",
"R-MMU-1247645",
"R-DME-1237069",
"R-RNO-1237042",
"R-TGU-1247645",
"R-BTA-1237042",
"R-GGA-1237069",
"R-DME-1247649",
"R-SSC-1237069",
"R-DRE-1237069",
"R-ATH-1247649"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05467",
"rxn08237",
"rxn09706",
"rxn09821",
"rxn09775",
"rxn09876",
"rxn08238",
"rxn09860"
]
}
},
{
"id":"DADNtex",
"name":"Deoxyadenosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"dad_2_e":-1.0,
"dad_2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0413",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"DADNtex"
]
},
"annotation":{
"bigg.reaction":[
"DADNtex"
],
"metanetx.reaction":[
"MNXR97081"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08293",
"rxn10939"
]
}
},
{
"id":"EX_cobalt2_e",
"name":"Co2+ exchange",
"metabolites":{
"cobalt2_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cobalt2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cobalt2_e"
],
"biocyc":[
"META:TRANS-RXN-141A"
],
"metanetx.reaction":[
"MNXR96821"
],
"rhea":[
"28579",
"28580",
"28581",
"28578"
],
"sabiork":[
"12148"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08241",
"rxn08242",
"rxn10474"
]
}
},
{
"id":"EX_colipa_e",
"name":"Core oligosaccharide lipid A exchange",
"metabolites":{
"colipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_colipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_colipa_e"
],
"metanetx.reaction":[
"MNXR96846"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08244"
]
}
},
{
"id":"EX_3hcinnm_e",
"name":"3-hydroxycinnamic acid exchange",
"metabolites":{
"3hcinnm_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3hcinnm_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3hcinnm_e"
],
"metanetx.reaction":[
"MNXR100571"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08702"
]
}
},
{
"id":"DAGK120",
"name":"Diacylglycerol kinase (n-C12:0)",
"metabolites":{
"12dgr120_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa120_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4236",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK120"
]
},
"annotation":{
"bigg.reaction":[
"DAGK120"
],
"metanetx.reaction":[
"MNXR97091"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_3hpppn_e",
"name":"3-(3-hydroxy-phenyl)propionate exchange",
"metabolites":{
"3hpppn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3hpppn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3hpppn_e"
],
"metanetx.reaction":[
"MNXR100697"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08726"
]
}
},
{
"id":"EX_cpgn_e",
"name":"Coprogen exchange",
"metabolites":{
"cpgn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cpgn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cpgn_e"
],
"metanetx.reaction":[
"MNXR142942"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_cpgn_un_e",
"name":"Coprogen unloaded (no Fe(III)) exchange",
"metabolites":{
"cpgn_un_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cpgn_un_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cpgn_un_e"
],
"metanetx.reaction":[
"MNXR142943"
],
"sbo":"SBO:0000627"
}
},
{
"id":"DAGK140",
"name":"Diacylglycerol kinase (n-C14:0)",
"metabolites":{
"12dgr140_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa140_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4236",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK140"
]
},
"annotation":{
"bigg.reaction":[
"DAGK140"
],
"metanetx.reaction":[
"MNXR97092"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_crn_e",
"name":"L-Carnitine exchange",
"metabolites":{
"crn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_crn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_crn_e"
],
"metanetx.reaction":[
"MNXR96906"
],
"rhea":[
"34962",
"34960",
"34959",
"34961"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09773",
"rxn09858",
"rxn09691",
"rxn08265"
]
}
},
{
"id":"EX_3ump_e",
"name":"3'-UMP exchange",
"metabolites":{
"3ump_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3ump_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3ump_e"
],
"metanetx.reaction":[
"MNXR94983"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08005"
]
}
},
{
"id":"EX_csn_e",
"name":"Cytosine exchange",
"metabolites":{
"csn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_csn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_csn_e"
],
"metanetx.reaction":[
"MNXR96928"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08267"
]
}
},
{
"id":"DAGK141",
"name":"Diacylglycerol kinase (n-C14:1)",
"metabolites":{
"12dgr141_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa141_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4236",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK141"
]
},
"annotation":{
"bigg.reaction":[
"DAGK141"
],
"metanetx.reaction":[
"MNXR97093"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_cu2_e",
"name":"Cu2+ exchange",
"metabolites":{
"cu2_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cu2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cu2_e"
],
"biocyc":[
"META:RXN0-14"
],
"metanetx.reaction":[
"MNXR96951"
],
"reactome.reaction":[
"R-HSA-437300",
"R-DME-437300",
"R-RNO-437300",
"R-SCE-437300",
"R-DRE-437300",
"R-XTR-437300",
"R-TGU-437300",
"R-BTA-437300",
"R-CFA-437300",
"R-SSC-437300",
"R-MMU-437300",
"R-GGA-437300"
],
"rhea":[
"28705",
"28706",
"28704",
"28703"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08274",
"rxn05212",
"rxn08273"
]
}
},
{
"id":"EX_cu_e",
"name":"Cu+ exchange",
"metabolites":{
"cu_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cu_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cu_e"
],
"metanetx.reaction":[
"MNXR96954"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_4abut_e",
"name":"4-Aminobutanoate exchange",
"metabolites":{
"4abut_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4abut_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4abut_e"
],
"metanetx.reaction":[
"MNXR94993"
],
"reactome.reaction":[
"R-XTR-888592",
"R-DRE-888592",
"R-OSA-888592",
"R-GGA-888592",
"R-SSC-888592",
"R-DME-888592",
"R-CFA-888592",
"R-BTA-888592",
"R-RNO-888592",
"R-SCE-888592",
"R-TGU-888592",
"R-ATH-888592",
"R-MMU-888592",
"R-HSA-888592",
"R-CEL-888592"
],
"rhea":[
"35035",
"35036",
"35037",
"35038"
],
"sabiork":[
"13098"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08028",
"rxn11326",
"rxn09795"
]
}
},
{
"id":"EX_4hoxpacd_e",
"name":"4-Hydroxyphenylacetaldehyde exchange",
"metabolites":{
"4hoxpacd_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4hoxpacd_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4hoxpacd_e"
],
"metanetx.reaction":[
"MNXR95017"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08006"
]
}
},
{
"id":"EX_5dglcn_e",
"name":"5-Dehydro-D-gluconate exchange",
"metabolites":{
"5dglcn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_5dglcn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_5dglcn_e"
],
"metanetx.reaction":[
"MNXR95067"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08012"
]
}
},
{
"id":"EX_cyan_e",
"name":"Hydrogen cyanide exchange",
"metabolites":{
"cyan_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cyan_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cyan_e"
],
"metanetx.reaction":[
"MNXR96957"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08276"
]
}
},
{
"id":"EX_LalaDgluMdapDala_e",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate-D-alanine exchange",
"metabolites":{
"LalaDgluMdapDala_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_LalaDgluMdapDala_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_LalaDgluMdapDala_e"
],
"metanetx.reaction":[
"MNXR95051"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08009"
]
}
},
{
"id":"DAGK160",
"name":"Diacylglycerol kinase (n-C16:0)",
"metabolites":{
"12dgr160_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa160_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4236",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK160"
]
},
"annotation":{
"bigg.reaction":[
"DAGK160"
],
"ec-code":[
"2.7.1.107"
],
"metanetx.reaction":[
"MNXR97094"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_LalaDgluMdap_e",
"name":"L-alanine-D-glutamate-meso-2,6-diaminoheptanedioate exchange",
"metabolites":{
"LalaDgluMdap_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_LalaDgluMdap_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_LalaDgluMdap_e"
],
"metanetx.reaction":[
"MNXR94971"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08004"
]
}
},
{
"id":"EX_ac_e",
"name":"Acetate exchange",
"metabolites":{
"ac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ac_e"
],
"biocyc":[
"META:RXN0-1981",
"META:TRANS-RXN0-567"
],
"metanetx.reaction":[
"MNXR95431"
],
"rhea":[
"27817",
"27814",
"27816",
"27815"
],
"sabiork":[
"12184"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09787",
"rxn09866",
"rxn10904",
"rxn08063"
]
}
},
{
"id":"EX_cynt_e",
"name":"Cyanate exchange",
"metabolites":{
"cynt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cynt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cynt_e"
],
"biocyc":[
"META:TRANS-RXN-14"
],
"metanetx.reaction":[
"MNXR96963"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08279"
]
}
},
{
"id":"EX_cys__D_e",
"name":"D-Cysteine exchange",
"metabolites":{
"cys__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cys_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cys__D_e"
],
"metanetx.reaction":[
"MNXR96997"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08283"
]
}
},
{
"id":"EX_cys__L_e",
"name":"L-Cysteine exchange",
"metabolites":{
"cys__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cys_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cys__L_e"
],
"biocyc":[
"META:RXN0-1924"
],
"metanetx.reaction":[
"MNXR97029"
],
"rhea":[
"29655",
"29656",
"29658",
"29657"
],
"sabiork":[
"13465"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08284",
"rxn10998",
"rxn08286"
]
}
},
{
"id":"EX_acac_e",
"name":"Acetoacetate exchange",
"metabolites":{
"acac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acac_e"
],
"biocyc":[
"META:TRANS-RXN0-281"
],
"metanetx.reaction":[
"MNXR95208"
],
"rhea":[
"29753",
"29752",
"29754",
"29751"
],
"sabiork":[
"12476"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08030",
"rxn10960",
"rxn13115"
]
}
},
{
"id":"EX_acald_e",
"name":"Acetaldehyde exchange",
"metabolites":{
"acald_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acald_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acald_e"
],
"metanetx.reaction":[
"MNXR95212"
],
"reactome.reaction":[
"R-HSA-449872"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09700",
"rxn08033",
"rxn13212",
"rxn08032"
]
}
},
{
"id":"DAGK161",
"name":"Diacylglycerol kinase (n-C16:1)",
"metabolites":{
"12dgr161_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa161_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4236",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK161"
]
},
"annotation":{
"bigg.reaction":[
"DAGK161"
],
"metanetx.reaction":[
"MNXR97097"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_acgal1p_e",
"name":"N-Acetyl-D-galactosamine 1-phosphate exchange",
"metabolites":{
"acgal1p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acgal1p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acgal1p_e"
],
"metanetx.reaction":[
"MNXR95234"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08036"
]
}
},
{
"id":"EX_acgal_e",
"name":"N-Acetyl-D-galactosamine exchange",
"metabolites":{
"acgal_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acgal_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acgal_e"
],
"metanetx.reaction":[
"MNXR95244"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08037"
]
}
},
{
"id":"EX_cysi__L_e",
"name":"L Cystine exchange",
"metabolites":{
"cysi__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cysi_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cysi__L_e"
],
"biocyc":[
"META:TRANS-RXN0-507"
],
"metanetx.reaction":[
"MNXR97004"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_cytd_e",
"name":"Cytidine exchange",
"metabolites":{
"cytd_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_cytd_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_cytd_e"
],
"metanetx.reaction":[
"MNXR97043"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13338",
"rxn08290",
"rxn10997"
]
}
},
{
"id":"EX_dad_2_e",
"name":"Deoxyadenosine exchange",
"metabolites":{
"dad_2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dad_2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dad_2_e"
],
"metanetx.reaction":[
"MNXR97081"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08293",
"rxn10939"
]
}
},
{
"id":"EX_damp_e",
"name":"DAMP exchange",
"metabolites":{
"damp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_damp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_damp_e"
],
"metanetx.reaction":[
"MNXR97136"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08303"
]
}
},
{
"id":"EX_dca_e",
"name":"Decanoate (n-C10:0) exchange",
"metabolites":{
"dca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dca_e"
],
"metanetx.reaction":[
"MNXR97181"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_dcmp_e",
"name":"DCMP exchange",
"metabolites":{
"dcmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dcmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dcmp_e"
],
"metanetx.reaction":[
"MNXR97186"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08315"
]
}
},
{
"id":"EX_acgam1p_e",
"name":"N-Acetyl-D-glucosamine 1-phosphate exchange",
"metabolites":{
"acgam1p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acgam1p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acgam1p_e"
],
"metanetx.reaction":[
"MNXR95246"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08039"
]
}
},
{
"id":"EX_acgam_e",
"name":"N-Acetyl-D-glucosamine exchange",
"metabolites":{
"acgam_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acgam_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acgam_e"
],
"metanetx.reaction":[
"MNXR95252"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08042"
]
}
},
{
"id":"EX_acmana_e",
"name":"N-Acetyl-D-mannosamine exchange",
"metabolites":{
"acmana_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acmana_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acmana_e"
],
"metanetx.reaction":[
"MNXR95277"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08047"
]
}
},
{
"id":"DAGK180",
"name":"Diacylglycerol kinase (n-C18:0)",
"metabolites":{
"12dgr180_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa180_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4236",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK180"
]
},
"annotation":{
"bigg.reaction":[
"DAGK180"
],
"metanetx.reaction":[
"MNXR97098"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_acmum_e",
"name":"N-Acetylmuramate exchange",
"metabolites":{
"acmum_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acmum_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acmum_e"
],
"metanetx.reaction":[
"MNXR95279"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08049"
]
}
},
{
"id":"EX_acnam_e",
"name":"N-Acetylneuraminate exchange",
"metabolites":{
"acnam_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acnam_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acnam_e"
],
"biocyc":[
"META:RXN-15315",
"META:RXN0-0"
],
"metanetx.reaction":[
"MNXR95292"
],
"rhea":[
"28994",
"28993",
"28992",
"28991"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08051"
]
}
},
{
"id":"EX_acolipa_e",
"name":"4-Amino-4-deoxy-L-arabinose modified core oligosaccharide lipid A exchange",
"metabolites":{
"acolipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acolipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acolipa_e"
],
"metanetx.reaction":[
"MNXR95379"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08056"
]
}
},
{
"id":"EX_dcyt_e",
"name":"Deoxycytidine exchange",
"metabolites":{
"dcyt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dcyt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dcyt_e"
],
"metanetx.reaction":[
"MNXR97208"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08317",
"rxn11014"
]
}
},
{
"id":"EX_ddca_e",
"name":"Dodecanoate (n-C12:0) exchange",
"metabolites":{
"ddca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ddca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ddca_e"
],
"metanetx.reaction":[
"MNXR97211"
],
"sbo":"SBO:0000627"
}
},
{
"id":"DAGK181",
"name":"Diacylglycerol kinase (n-C18:1)",
"metabolites":{
"12dgr181_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pa181_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4236",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"DAGK181"
]
},
"annotation":{
"bigg.reaction":[
"DAGK181"
],
"metanetx.reaction":[
"MNXR97100"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_dgmp_e",
"name":"DGMP exchange",
"metabolites":{
"dgmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dgmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dgmp_e"
],
"metanetx.reaction":[
"MNXR97322"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08322"
]
}
},
{
"id":"EX_dgsn_e",
"name":"Deoxyguanosine exchange",
"metabolites":{
"dgsn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dgsn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dgsn_e"
],
"metanetx.reaction":[
"MNXR97324"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08324"
]
}
},
{
"id":"EX_acser_e",
"name":"O-Acetyl-L-serine exchange",
"metabolites":{
"acser_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_acser_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_acser_e"
],
"biocyc":[
"META:RXN0-1923"
],
"metanetx.reaction":[
"MNXR95416"
],
"rhea":[
"29659",
"29660",
"29662",
"29661"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08060",
"rxn08059"
]
}
},
{
"id":"EX_ade_e",
"name":"Adenine exchange",
"metabolites":{
"ade_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ade_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ade_e"
],
"biocyc":[
"META:TRANS-RXN0-577"
],
"metanetx.reaction":[
"MNXR95445"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10918",
"rxn08065",
"rxn09786"
]
}
},
{
"id":"EX_adn_e",
"name":"Adenosine exchange",
"metabolites":{
"adn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_adn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_adn_e"
],
"metanetx.reaction":[
"MNXR95460"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08069",
"rxn11000"
]
}
},
{
"id":"EX_adocbl_e",
"name":"Adenosylcobalamin exchange",
"metabolites":{
"adocbl_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_adocbl_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_adocbl_e"
],
"metanetx.reaction":[
"MNXR96480"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_dha_e",
"name":"Dihydroxyacetone exchange",
"metabolites":{
"dha_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dha_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dha_e"
],
"biocyc":[
"META:TRANS-RXN0-559"
],
"metanetx.reaction":[
"MNXR97367"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08325",
"rxn08326",
"rxn05532"
]
}
},
{
"id":"EX_dimp_e",
"name":"DIMP exchange",
"metabolites":{
"dimp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dimp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dimp_e"
],
"metanetx.reaction":[
"MNXR97463"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08342"
]
}
},
{
"id":"DALAt2pp",
"name":"D-alanine transport in via proton symport (periplasm)",
"metabolites":{
"ala__D_c":1.0,
"ala__D_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4398",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DALAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DALAt2pp"
],
"biocyc":[
"META:TRANS-RXN-62A"
],
"metanetx.reaction":[
"MNXR97135"
],
"rhea":[
"28903",
"28904",
"28906",
"28905"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05494",
"rxn08301"
]
}
},
{
"id":"EX_din_e",
"name":"Deoxyinosine exchange",
"metabolites":{
"din_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_din_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_din_e"
],
"metanetx.reaction":[
"MNXR97466"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08344"
]
}
},
{
"id":"EX_ag_e",
"name":"Silver exchange",
"metabolites":{
"ag_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ag_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ag_e"
],
"metanetx.reaction":[
"MNXR142917"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_agm_e",
"name":"Agmatine exchange",
"metabolites":{
"agm_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_agm_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_agm_e"
],
"metanetx.reaction":[
"MNXR95556"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08082"
]
}
},
{
"id":"EX_dms_e",
"name":"Dimethyl sulfide exchange",
"metabolites":{
"dms_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dms_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dms_e"
],
"metanetx.reaction":[
"MNXR97534"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08359",
"rxn10500"
]
}
},
{
"id":"DALAtex",
"name":"D-Alanine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ala__D_e":-1.0,
"ala__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DALAtex"
]
},
"annotation":{
"bigg.reaction":[
"DALAtex"
],
"metanetx.reaction":[
"MNXR95702"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08302",
"rxn10991"
]
}
},
{
"id":"EX_dmso_e",
"name":"Dimethyl sulfoxide exchange",
"metabolites":{
"dmso_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dmso_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dmso_e"
],
"biocyc":[
"META:TRANS-RXN0-273"
],
"metanetx.reaction":[
"MNXR97533"
],
"rhea":[
"29700",
"29701",
"29702",
"29699"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08358"
]
}
},
{
"id":"EX_akg_e",
"name":"2-Oxoglutarate exchange",
"metabolites":{
"akg_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_akg_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_akg_e"
],
"metanetx.reaction":[
"MNXR95663"
],
"sabiork":[
"13794"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10923",
"rxn08096",
"rxn13220"
]
}
},
{
"id":"EX_ala_B_e",
"name":"Beta-Alanine exchange",
"metabolites":{
"ala_B_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ala_B_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ala_B_e"
],
"metanetx.reaction":[
"MNXR95682"
],
"reactome.reaction":[
"R-RNO-909763",
"R-HSA-909765"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08175"
]
}
},
{
"id":"EX_ala__D_e",
"name":"D-Alanine exchange",
"metabolites":{
"ala__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ala_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ala__D_e"
],
"metanetx.reaction":[
"MNXR95702"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08302",
"rxn10991"
]
}
},
{
"id":"EX_dopa_e",
"name":"Dopamine exchange",
"metabolites":{
"dopa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dopa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dopa_e"
],
"metanetx.reaction":[
"MNXR97758"
],
"reactome.reaction":[
"R-TGU-372542",
"R-GGA-372542",
"R-CFA-372542",
"R-BTA-372542",
"R-CEL-372542",
"R-DRE-372542",
"R-HSA-372542",
"R-MMU-372542",
"R-SSC-372542",
"R-DME-372542",
"R-RNO-372542",
"R-HSA-351596"
],
"sabiork":[
"7032"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08363"
]
}
},
{
"id":"EX_g1p_e",
"name":"D-Glucose 1-phosphate exchange",
"metabolites":{
"g1p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_g1p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_g1p_e"
],
"metanetx.reaction":[
"MNXR99849"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08545"
]
}
},
{
"id":"EX_dtmp_e",
"name":"DTMP exchange",
"metabolites":{
"dtmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dtmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dtmp_e"
],
"metanetx.reaction":[
"MNXR97806"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08374"
]
}
},
{
"id":"EX_dump_e",
"name":"DUMP exchange",
"metabolites":{
"dump_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dump_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dump_e"
],
"metanetx.reaction":[
"MNXR97813"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09816",
"rxn08375"
]
}
},
{
"id":"EX_duri_e",
"name":"Deoxyuridine exchange",
"metabolites":{
"duri_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_duri_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_duri_e"
],
"metanetx.reaction":[
"MNXR97819"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10984",
"rxn08377"
]
}
},
{
"id":"EX_eca4colipa_e",
"name":"(enterobacterial common antigen)x4 core oligosaccharide lipid A exchange",
"metabolites":{
"eca4colipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_eca4colipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_eca4colipa_e"
],
"metanetx.reaction":[
"MNXR97872"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08406"
]
}
},
{
"id":"EX_enlipa_e",
"name":"Phosphoethanolamine KDO(2)-lipid (A) exchange",
"metabolites":{
"enlipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_enlipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_enlipa_e"
],
"metanetx.reaction":[
"MNXR97923"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08419"
]
}
},
{
"id":"EX_enter_e",
"name":"Enterochelin exchange",
"metabolites":{
"enter_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_enter_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_enter_e"
],
"biocyc":[
"META:RXN0-8",
"META:TRANS-RXN0-496"
],
"metanetx.reaction":[
"MNXR123417"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_etha_e",
"name":"Ethanolamine exchange",
"metabolites":{
"etha_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_etha_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_etha_e"
],
"biocyc":[
"META:TRANS-RXN0-476"
],
"metanetx.reaction":[
"MNXR97974"
],
"rhea":[
"32750",
"32749",
"32747",
"32748"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08424",
"rxn10841"
]
}
},
{
"id":"EX_ala__L_e",
"name":"L-Alanine exchange",
"metabolites":{
"ala__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ala_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ala__L_e"
],
"metanetx.reaction":[
"MNXR95706"
],
"sabiork":[
"10375"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08104",
"rxn10921",
"rxn13221"
]
}
},
{
"id":"EX_melib_e",
"name":"Melibiose exchange",
"metabolites":{
"melib_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_melib_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_melib_e"
],
"metanetx.reaction":[
"MNXR138589"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_met__D_e",
"name":"D-Methionine exchange",
"metabolites":{
"met__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_met_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_met__D_e"
],
"metanetx.reaction":[
"MNXR101473"
],
"rhea":[
"34913",
"34912",
"34914",
"34911"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08911"
]
}
},
{
"id":"EX_met__L_e",
"name":"L-Methionine exchange",
"metabolites":{
"met__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_met_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_met__L_e"
],
"metanetx.reaction":[
"MNXR101493"
],
"sabiork":[
"13469",
"13461"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08920",
"rxn10976"
]
}
},
{
"id":"EX_metsox_R__L_e",
"name":"L-methionine-R-sulfoxide exchange",
"metabolites":{
"metsox_R__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_metsox_R_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_metsox_R__L_e"
],
"metanetx.reaction":[
"MNXR138593"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08917"
]
}
},
{
"id":"EX_metsox_S__L_e",
"name":"L-Methionine S-oxide exchange",
"metabolites":{
"metsox_S__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_metsox_S_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_metsox_S__L_e"
],
"metanetx.reaction":[
"MNXR101483"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08915"
]
}
},
{
"id":"EX_mg2_e",
"name":"Mg exchange",
"metabolites":{
"mg2_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mg2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mg2_e"
],
"biocyc":[
"META:TRANS-RXN-141"
],
"metanetx.reaction":[
"MNXR101507"
],
"reactome.reaction":[
"R-MMU-442661",
"R-OSA-5336466",
"R-BTA-5336453",
"R-SSC-442661",
"R-MMU-5336453",
"R-HSA-5339528",
"R-MMU-5336466",
"R-TGU-5339538",
"R-SCE-5336466",
"R-SCE-5339538",
"R-XTR-5336466",
"R-GGA-442661",
"R-ATH-5336453",
"R-BTA-5336466",
"R-RNO-5339538",
"R-SSC-5339538",
"R-SPO-5339528",
"R-DME-5339528",
"R-GGA-5339538",
"R-CEL-5336453",
"R-TGU-5336453",
"R-OSA-5336453",
"R-SCE-5339528",
"R-ATH-5336466",
"R-CFA-5336453",
"R-CEL-5339528",
"R-SPO-5339538",
"R-SSC-5336466",
"R-XTR-5339528",
"R-SSC-5339528",
"R-DRE-5339528",
"R-BTA-5339528",
"R-CFA-442661",
"R-CFA-5339538",
"R-DME-442661",
"R-DME-5339538",
"R-DRE-5339538",
"R-MMU-5339538",
"R-RNO-442661",
"R-RNO-5336453",
"R-DDI-5336466",
"R-RNO-5339528",
"R-HSA-442661",
"R-HSA-5336453",
"R-TGU-5336466",
"R-DRE-5336466",
"R-BTA-442661",
"R-DRE-5336453",
"R-HSA-5339538",
"R-HSA-5336454",
"R-TGU-5339528",
"R-GGA-5339528",
"R-XTR-5339538",
"R-MMU-5339528",
"R-DME-5336453",
"R-RNO-5336466",
"R-CFA-5336466",
"R-CEL-442661",
"R-SPO-5336466",
"R-GGA-5336453",
"R-BTA-5339538",
"R-TGU-442661",
"R-HSA-5336466",
"R-XTR-442661",
"R-CEL-5339538",
"R-MMU-5336430",
"R-DRE-442661",
"R-GGA-5336466",
"R-CFA-5339528"
],
"rhea":[
"29827",
"29828",
"29829",
"29830"
],
"sabiork":[
"12062"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05616",
"rxn08922",
"rxn08923"
]
}
},
{
"id":"EX_ethso3_e",
"name":"Ethanesulfonate exchange",
"metabolites":{
"ethso3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ethso3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ethso3_e"
],
"metanetx.reaction":[
"MNXR97978"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08426"
]
}
},
{
"id":"EX_etoh_e",
"name":"Ethanol exchange",
"metabolites":{
"etoh_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_etoh_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_etoh_e"
],
"biocyc":[
"META:TRANS-RXN0-546"
],
"metanetx.reaction":[
"MNXR97980"
],
"rhea":[
"35269",
"35267",
"35270",
"35268"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09683",
"rxn08428",
"rxn09764"
]
}
},
{
"id":"EX_minohp_e",
"name":"Myo-Inositol hexakisphosphate exchange",
"metabolites":{
"minohp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_minohp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_minohp_e"
],
"metanetx.reaction":[
"MNXR101585"
],
"reactome.reaction":[
"R-HSA-1855164",
"R-HSA-1855188",
"R-HSA-1855187"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13346",
"rxn08925"
]
}
},
{
"id":"EX_f6p_e",
"name":"D-fructose 6-phosphate exchange",
"metabolites":{
"f6p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_f6p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_f6p_e"
],
"metanetx.reaction":[
"MNXR99076"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_g3pc_e",
"name":"Sn-Glycero-3-phosphocholine exchange",
"metabolites":{
"g3pc_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_g3pc_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_g3pc_e"
],
"metanetx.reaction":[
"MNXR99874"
],
"rhea":[
"32912",
"32911",
"32913",
"32914"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08554",
"rxn13291"
]
}
},
{
"id":"EX_fald_e",
"name":"Formaldehyde exchange",
"metabolites":{
"fald_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fald_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fald_e"
],
"metanetx.reaction":[
"MNXR99238"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08461",
"rxn08462"
]
}
},
{
"id":"EX_fe2_e",
"name":"Fe2+ exchange",
"metabolites":{
"fe2_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe2_e"
],
"biocyc":[
"META:TRANS-RXN-8"
],
"metanetx.reaction":[
"MNXR99505"
],
"rhea":[
"28488",
"28487",
"28489",
"28486"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08476",
"rxn08475",
"rxn13286",
"rxn10963"
]
}
},
{
"id":"EX_fe3_e",
"name":"Fe3+ exchange",
"metabolites":{
"fe3_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe3_e"
],
"metanetx.reaction":[
"MNXR99522"
],
"reactome.reaction":[
"R-RNO-442368",
"R-HSA-442368",
"R-BTA-442368",
"R-SSC-442368",
"R-MMU-442368",
"R-CFA-442368",
"R-GGA-442368",
"R-TGU-442368"
],
"rhea":[
"34973",
"34972",
"34974",
"34971"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05292",
"rxn08492"
]
}
},
{
"id":"EX_fe3dcit_e",
"name":"Fe(III)dicitrate exchange",
"metabolites":{
"fe3dcit_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe3dcit_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe3dcit_e"
],
"metanetx.reaction":[
"MNXR142958"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_mmet_e",
"name":"S-Methyl-L-methionine exchange",
"metabolites":{
"mmet_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mmet_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mmet_e"
],
"biocyc":[
"META:TRANS-RXN0-486"
],
"metanetx.reaction":[
"MNXR101659"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08945"
]
}
},
{
"id":"EX_mn2_e",
"name":"Mn2+ exchange",
"metabolites":{
"mn2_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mn2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mn2_e"
],
"biocyc":[
"META:RXN0-16",
"META:TRANS-RXN0-487"
],
"metanetx.reaction":[
"MNXR101670"
],
"rhea":[
"28702",
"28699",
"28700",
"28701"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08952",
"rxn08947"
]
}
},
{
"id":"EX_mnl_e",
"name":"D-Mannitol exchange",
"metabolites":{
"mnl_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mnl_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mnl_e"
],
"metanetx.reaction":[
"MNXR101678"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08950"
]
}
},
{
"id":"EX_fe3dhbzs_e",
"name":"Ferric 2,3-dihydroxybenzoylserine exchange",
"metabolites":{
"fe3dhbzs_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe3dhbzs_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe3dhbzs_e"
],
"metanetx.reaction":[
"MNXR142960"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_mobd_e",
"name":"Molybdate exchange",
"metabolites":{
"mobd_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mobd_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mobd_e"
],
"metanetx.reaction":[
"MNXR101690"
],
"rhea":[
"34909",
"34907",
"34910",
"34908"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08956"
]
}
},
{
"id":"EX_g3pe_e",
"name":"Sn-Glycero-3-phosphoethanolamine exchange",
"metabolites":{
"g3pe_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_g3pe_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_g3pe_e"
],
"metanetx.reaction":[
"MNXR99884"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08560"
]
}
},
{
"id":"EX_mso3_e",
"name":"Methanesulfonate exchange",
"metabolites":{
"mso3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mso3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mso3_e"
],
"metanetx.reaction":[
"MNXR101742"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08960"
]
}
},
{
"id":"EX_fe3hox_e",
"name":"Fe(III)hydroxamate exchange",
"metabolites":{
"fe3hox_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe3hox_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe3hox_e"
],
"metanetx.reaction":[
"MNXR142961"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_fe3hox_un_e",
"name":"Fe(III)hydoxamate, unloaded exchange",
"metabolites":{
"fe3hox_un_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe3hox_un_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe3hox_un_e"
],
"metanetx.reaction":[
"MNXR142962"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_fecrm_e",
"name":"Ferrichrome exchange",
"metabolites":{
"fecrm_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fecrm_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fecrm_e"
],
"biocyc":[
"META:RXN0-1701",
"META:RXN0-2241"
],
"metanetx.reaction":[
"MNXR123118"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_n2o_e",
"name":"Nitrous oxide exchange",
"metabolites":{
"n2o_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_n2o_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_n2o_e"
],
"metanetx.reaction":[
"MNXR101797"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08966",
"rxn08967"
]
}
},
{
"id":"EX_g3pg_e",
"name":"Glycerophosphoglycerol exchange",
"metabolites":{
"g3pg_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_g3pg_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_g3pg_e"
],
"metanetx.reaction":[
"MNXR99886"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08562"
]
}
},
{
"id":"EX_na1_e",
"name":"Sodium exchange",
"metabolites":{
"na1_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_na1_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_na1_e"
],
"biocyc":[
"META:TRANS-RXN-189"
],
"metanetx.reaction":[
"MNXR101804"
],
"reactome.reaction":[
"R-TGU-2671885",
"R-MMU-3295580",
"R-GGA-5576895",
"R-GGA-2672334",
"R-BTA-2672334",
"R-DRE-2671885",
"R-MMU-2730664",
"R-BTA-3295580",
"R-BTA-2730664",
"R-CFA-3295580",
"R-XTR-2672334",
"R-RNO-2671885",
"R-HSA-2671885",
"R-RNO-2730664",
"R-SSC-2671885",
"R-HSA-3295580",
"R-SSC-2672334",
"R-TGU-2672334",
"R-DRE-5576895",
"R-CEL-2730664",
"R-HSA-5576895",
"R-MMU-2672334",
"R-BTA-5576895",
"R-TGU-2730664",
"R-CFA-2672334",
"R-HSA-2730664",
"R-CFA-5576895",
"R-XTR-2671885",
"R-XTR-5576895",
"R-CFA-2730664",
"R-DME-2730664",
"R-XTR-3295580",
"R-GGA-3295580",
"R-BTA-2671885",
"R-DRE-3295580",
"R-MMU-2671885",
"R-SSC-3295580",
"R-CEL-3295580",
"R-GGA-2671885",
"R-GGA-2730664",
"R-HSA-2672334",
"R-SSC-5576895",
"R-CEL-2671885",
"R-DME-3295580",
"R-RNO-2672334",
"R-RNO-3295580",
"R-MMU-5576895",
"R-RNO-5576895",
"R-TGU-3295580",
"R-XTR-2730664",
"R-CFA-2671885"
],
"rhea":[
"34963",
"34966",
"34965",
"34964"
],
"sabiork":[
"12962"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08985",
"rxn10899"
]
}
},
{
"id":"EX_fecrm_un_e",
"name":"Ferrichrome minus Fe(III) exchange",
"metabolites":{
"fecrm_un_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fecrm_un_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fecrm_un_e"
],
"metanetx.reaction":[
"MNXR142964"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_feenter_e",
"name":"Fe-enterobactin exchange",
"metabolites":{
"feenter_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feenter_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feenter_e"
],
"metanetx.reaction":[
"MNXR142965"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_nac_e",
"name":"Nicotinate exchange",
"metabolites":{
"nac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_nac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_nac_e"
],
"metanetx.reaction":[
"MNXR101808"
],
"reactome.reaction":[
"R-TGU-8869603",
"R-BTA-8869603",
"R-XTR-8869603",
"R-CFA-8869603",
"R-GGA-8869603",
"R-RNO-8869603",
"R-HSA-8869603",
"R-DME-8869603",
"R-SSC-8869603",
"R-MMU-8869603",
"R-DRE-8869603"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08970",
"rxn05310",
"rxn08969"
]
}
},
{
"id":"EX_feoxam_e",
"name":"Ferroxamine exchange",
"metabolites":{
"feoxam_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feoxam_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feoxam_e"
],
"metanetx.reaction":[
"MNXR99567"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_g3pi_e",
"name":"Sn-Glycero-3-phospho-1-inositol exchange",
"metabolites":{
"g3pi_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_g3pi_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_g3pi_e"
],
"metanetx.reaction":[
"MNXR99888"
],
"rhea":[
"32918",
"32917",
"32916",
"32915"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13292",
"rxn08564"
]
}
},
{
"id":"EX_feoxam_un_e",
"name":"Ferroxamine minus Fe(3) exchange",
"metabolites":{
"feoxam_un_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feoxam_un_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feoxam_un_e"
],
"metanetx.reaction":[
"MNXR142966"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_nh4_e",
"name":"Ammonia exchange",
"metabolites":{
"nh4_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_nh4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_nh4_e"
],
"biocyc":[
"META:TRANS-RXN0-206",
"META:RXN-9615",
"META:TRANS-RXN0-544"
],
"metanetx.reaction":[
"MNXR101950"
],
"reactome.reaction":[
"R-CEL-444416",
"R-SSC-444416",
"R-DDI-444416",
"R-MMU-444416",
"R-DRE-444416",
"R-GGA-444416",
"R-CFA-444416",
"R-HSA-444416",
"R-XTR-444416",
"R-BTA-444416",
"R-RNO-444416",
"R-TGU-444416",
"R-DME-444416"
],
"rhea":[
"28749",
"28748",
"28750",
"28747"
],
"sabiork":[
"11683"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13364",
"rxn09835",
"rxn05466",
"rxn08987",
"rxn08986",
"rxn09736"
]
}
},
{
"id":"EX_ni2_e",
"name":"Ni2+ exchange",
"metabolites":{
"ni2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ni2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ni2_e"
],
"biocyc":[
"META:TRANS-RXN-141B"
],
"metanetx.reaction":[
"MNXR101958"
],
"rhea":[
"29833",
"29831",
"29834",
"29832"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_for_e",
"name":"Formate exchange",
"metabolites":{
"for_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_for_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_for_e"
],
"biocyc":[
"META:TRANS-RXN-1"
],
"metanetx.reaction":[
"MNXR99620"
],
"reactome.reaction":[
"R-HSA-6803255"
],
"rhea":[
"29681",
"29680",
"29682",
"29679"
],
"sabiork":[
"12483"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09754",
"rxn08525",
"rxn09682",
"rxn08526"
]
}
},
{
"id":"EX_fru_e",
"name":"D-Fructose exchange",
"metabolites":{
"fru_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fru_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fru_e"
],
"metanetx.reaction":[
"MNXR99663"
],
"reactome.reaction":[
"R-OSA-189222",
"R-XTR-189222",
"R-SCE-189222",
"R-ATH-189222",
"R-RNO-189222",
"R-DME-189222",
"R-TGU-189222",
"R-SSC-189222",
"R-CFA-189222",
"R-DRE-189222",
"R-HSA-189222",
"R-GGA-189222",
"R-BTA-189222",
"R-MMU-189222",
"R-DDI-189222"
],
"sabiork":[
"13415"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12996",
"rxn08537"
]
}
},
{
"id":"EX_frulys_e",
"name":"Fructoselysine exchange",
"metabolites":{
"frulys_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_frulys_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_frulys_e"
],
"biocyc":[
"META:TRANS-RXN0-417"
],
"metanetx.reaction":[
"MNXR99657"
],
"rhea":[
"28457",
"28455",
"28456",
"28454"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08534"
]
}
},
{
"id":"EX_fruur_e",
"name":"D-Fructuronate exchange",
"metabolites":{
"fruur_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fruur_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fruur_e"
],
"metanetx.reaction":[
"MNXR99659"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08539"
]
}
},
{
"id":"EX_nmn_e",
"name":"NMN exchange",
"metabolites":{
"nmn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_nmn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_nmn_e"
],
"metanetx.reaction":[
"MNXR101972"
],
"rhea":[
"28485",
"28483",
"28482",
"28484"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08997",
"rxn08995",
"rxn10181"
]
}
},
{
"id":"EX_no2_e",
"name":"Nitrite exchange",
"metabolites":{
"no2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_no2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_no2_e"
],
"biocyc":[
"META:TRANS-RXN-137"
],
"metanetx.reaction":[
"MNXR101912"
],
"rhea":[
"28983",
"28986",
"28984",
"28985"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10823",
"rxn08999"
]
}
},
{
"id":"EX_no3_e",
"name":"Nitrate exchange",
"metabolites":{
"no3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_no3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_no3_e"
],
"metanetx.reaction":[
"MNXR101992"
],
"rhea":[
"34924",
"34926",
"34923",
"34925"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09005",
"rxn10935"
]
}
},
{
"id":"EX_no_e",
"name":"Nitric oxide exchange",
"metabolites":{
"no_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_no_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_no_e"
],
"metanetx.reaction":[
"MNXR101998"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_g3ps_e",
"name":"Glycerophosphoserine exchange",
"metabolites":{
"g3ps_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_g3ps_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_g3ps_e"
],
"metanetx.reaction":[
"MNXR99893"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08566"
]
}
},
{
"id":"EX_o2_e",
"name":"O2 exchange",
"metabolites":{
"o2_e":-1.0
},
"lower_bound":-18.5,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_o2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_o2_e"
],
"biocyc":[
"META:TRANS-RXN0-474"
],
"metanetx.reaction":[
"MNXR102090"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09641",
"rxn05468",
"rxn09031",
"rxn09032",
"rxn09734"
]
}
},
{
"id":"EX_o2s_e",
"name":"Superoxide anion exchange",
"metabolites":{
"o2s_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_o2s_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_o2s_e"
],
"metanetx.reaction":[
"MNXR102089"
],
"reactome.reaction":[
"R-HSA-1222342"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_fuc__L_e",
"name":"L-Fucose exchange",
"metabolites":{
"fuc__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fuc_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fuc__L_e"
],
"metanetx.reaction":[
"MNXR99704"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_fum_e",
"name":"Fumarate exchange",
"metabolites":{
"fum_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fum_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fum_e"
],
"biocyc":[
"META:TRANS-RXN0-553"
],
"metanetx.reaction":[
"MNXR99715"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08544",
"rxn11013"
]
}
},
{
"id":"EX_ocdca_e",
"name":"Octadecanoate (n-C18:0) exchange",
"metabolites":{
"ocdca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ocdca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ocdca_e"
],
"metanetx.reaction":[
"MNXR99109"
],
"rhea":[
"39807",
"39808",
"39809",
"39810"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09034",
"rxn09669"
]
}
},
{
"id":"EX_g6p_e",
"name":"D-Glucose 6-phosphate exchange",
"metabolites":{
"g6p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_g6p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_g6p_e"
],
"metanetx.reaction":[
"MNXR99915"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08570",
"rxn09644",
"rxn13641"
]
}
},
{
"id":"EX_ocdcea_e",
"name":"Octadecenoate (n-C18:1) exchange",
"metabolites":{
"ocdcea_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ocdcea_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ocdcea_e"
],
"metanetx.reaction":[
"MNXR99110"
],
"rhea":[
"33658",
"33655",
"33656",
"33657"
],
"sabiork":[
"10346"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_octa_e",
"name":"Octanoate (n-C8:0) exchange",
"metabolites":{
"octa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_octa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_octa_e"
],
"biocyc":[
"META:TRANS-RXN0-272"
],
"metanetx.reaction":[
"MNXR99126"
],
"rhea":[
"29761",
"29762",
"29759",
"29760"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09036",
"rxn09840"
]
}
},
{
"id":"EX_gal1p_e",
"name":"Alpha-D-Galactose 1-phosphate exchange",
"metabolites":{
"gal1p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gal1p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gal1p_e"
],
"metanetx.reaction":[
"MNXR99923"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08572"
]
}
},
{
"id":"EX_orn_e",
"name":"Ornithine exchange",
"metabolites":{
"orn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_orn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_orn_e"
],
"biocyc":[
"META:TRANS-RXN-230"
],
"metanetx.reaction":[
"MNXR102223"
],
"sabiork":[
"7986"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10824",
"rxn09048"
]
}
},
{
"id":"EX_orot_e",
"name":"Orotate exchange",
"metabolites":{
"orot_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_orot_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_orot_e"
],
"metanetx.reaction":[
"MNXR102230"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10908",
"rxn09050"
]
}
},
{
"id":"EX_udpgal_e",
"name":"UDPgalactose exchange",
"metabolites":{
"udpgal_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_udpgal_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_udpgal_e"
],
"metanetx.reaction":[
"MNXR105061"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09349",
"rxn13413"
]
}
},
{
"id":"EX_udpglcur_e",
"name":"UDP-D-glucuronate exchange",
"metabolites":{
"udpglcur_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_udpglcur_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_udpglcur_e"
],
"metanetx.reaction":[
"MNXR105066"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09352"
]
}
},
{
"id":"EX_gal_bD_e",
"name":"Beta D-Galactose exchange",
"metabolites":{
"gal_bD_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gal_bD_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gal_bD_e"
],
"metanetx.reaction":[
"MNXR99953"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08574"
]
}
},
{
"id":"EX_ump_e",
"name":"UMP exchange",
"metabolites":{
"ump_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ump_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ump_e"
],
"metanetx.reaction":[
"MNXR105127"
],
"rhea":[
"27927",
"27929",
"27926",
"27928"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09808",
"rxn09361"
]
}
},
{
"id":"EX_gal_e",
"name":"D-Galactose exchange",
"metabolites":{
"gal_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gal_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gal_e"
],
"metanetx.reaction":[
"MNXR100025"
],
"rhea":[
"34918",
"34917",
"34916",
"34915"
],
"sabiork":[
"7001"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10911",
"rxn08585"
]
}
},
{
"id":"EX_ura_e",
"name":"Uracil exchange",
"metabolites":{
"ura_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ura_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ura_e"
],
"biocyc":[
"META:TRANS-RXN0-560"
],
"metanetx.reaction":[
"MNXR105147"
],
"rhea":[
"27320",
"28622",
"27319",
"27318"
],
"sabiork":[
"12300"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10993",
"rxn09366"
]
}
},
{
"id":"EX_urea_e",
"name":"Urea exchange",
"metabolites":{
"urea_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_urea_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_urea_e"
],
"biocyc":[
"META:TRANS-RXN0-460"
],
"metanetx.reaction":[
"MNXR105156"
],
"reactome.reaction":[
"R-DRE-444126",
"R-XTR-444126",
"R-SSC-507873",
"R-GGA-507875",
"R-GGA-507873",
"R-SPO-507873",
"R-CEL-507873",
"R-HSA-507875",
"R-RNO-507875",
"R-SCE-507875",
"R-TGU-507875",
"R-CEL-507875",
"R-PFA-507873",
"R-SSC-507875",
"R-MMU-444126",
"R-MMU-507873",
"R-HSA-507873",
"R-XTR-507875",
"R-MMU-507875",
"R-SPO-507875",
"R-CFA-444126",
"R-CFA-507875",
"R-GGA-444126",
"R-PFA-507875",
"R-DRE-507875",
"R-XTR-507873",
"R-TGU-444126",
"R-RNO-507873",
"R-TGU-507873",
"R-SSC-444126",
"R-DRE-507873",
"R-BTA-507875",
"R-RNO-444126",
"R-SCE-507873",
"R-CFA-507873",
"R-BTA-444126",
"R-HSA-444126",
"R-BTA-507873"
],
"rhea":[
"32802",
"32799",
"32801",
"32800"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09369",
"rxn05667",
"rxn09368"
]
}
},
{
"id":"EX_oaa_e",
"name":"Oxaloacetate exchange",
"metabolites":{
"oaa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_oaa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_oaa_e"
],
"biocyc":[
"META:RXN-13407",
"META:TRANS-RXN-226"
],
"ec-code":[
"5.3.2.2"
],
"metanetx.reaction":[
"MNXR102100"
],
"sabiork":[
"13795"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13365"
]
}
},
{
"id":"EX_pacald_e",
"name":"Phenylacetaldehyde exchange",
"metabolites":{
"pacald_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pacald_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pacald_e"
],
"biocyc":[
"META:TRANS-RXN0-284"
],
"metanetx.reaction":[
"MNXR102312"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09061",
"rxn13374",
"rxn13373"
]
}
},
{
"id":"EX_peamn_e",
"name":"Phenethylamine exchange",
"metabolites":{
"peamn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_peamn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_peamn_e"
],
"metanetx.reaction":[
"MNXR102462"
],
"rhea":[
"29745",
"29744",
"29746",
"29743"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn11405",
"rxn09080"
]
}
},
{
"id":"EX_galct__D_e",
"name":"D-Galactarate exchange",
"metabolites":{
"galct__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_galct_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_galct__D_e"
],
"biocyc":[
"META:TRANS-RXN0-203"
],
"metanetx.reaction":[
"MNXR99963"
],
"rhea":[
"28478",
"28480",
"28479",
"28481"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12441",
"rxn08581"
]
}
},
{
"id":"EX_phe__L_e",
"name":"L-Phenylalanine exchange",
"metabolites":{
"phe__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_phe_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_phe__L_e"
],
"biocyc":[
"META:RXN66-445"
],
"metanetx.reaction":[
"MNXR102637"
],
"rhea":[
"27952",
"27951",
"27950",
"27953"
],
"sabiork":[
"13470",
"14018"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn11018",
"rxn09118"
]
}
},
{
"id":"EX_pheme_e",
"name":"Protoheme exchange",
"metabolites":{
"pheme_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pheme_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pheme_e"
],
"metanetx.reaction":[
"MNXR102625"
],
"reactome.reaction":[
"R-CFA-917892",
"R-RNO-917892",
"R-CEL-917892",
"R-BTA-917892",
"R-TGU-917892",
"R-HSA-917892",
"R-MMU-917892",
"R-DRE-917892",
"R-XTR-917892",
"R-SSC-917892",
"R-DME-917892",
"R-GGA-917892"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_uri_e",
"name":"Uridine exchange",
"metabolites":{
"uri_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_uri_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_uri_e"
],
"metanetx.reaction":[
"MNXR105165"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10987",
"rxn09372"
]
}
},
{
"id":"EX_pi_e",
"name":"Phosphate exchange",
"metabolites":{
"pi_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pi_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pi_e"
],
"biocyc":[
"META:TRANS-RXN0-470"
],
"metanetx.reaction":[
"MNXR102871"
],
"rhea":[
"32824",
"32826",
"32825",
"32823"
],
"sabiork":[
"10985"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10838",
"rxn09722",
"rxn09121",
"rxn13178"
]
}
},
{
"id":"EX_galctn__D_e",
"name":"D-Galactonate exchange",
"metabolites":{
"galctn__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_galctn_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_galctn__D_e"
],
"metanetx.reaction":[
"MNXR99961"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08579"
]
}
},
{
"id":"EX_val__L_e",
"name":"L-Valine exchange",
"metabolites":{
"val__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_val_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_val__L_e"
],
"biocyc":[
"META:TRANS-RXN0-269"
],
"metanetx.reaction":[
"MNXR105190"
],
"rhea":[
"29706",
"29703",
"29705",
"29704"
],
"sabiork":[
"13468"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05245",
"rxn09375"
]
}
},
{
"id":"EX_xan_e",
"name":"Xanthine exchange",
"metabolites":{
"xan_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_xan_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_xan_e"
],
"biocyc":[
"META:TRANS-RXN0-561"
],
"metanetx.reaction":[
"MNXR105226"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09379",
"rxn09652",
"rxn09378"
]
}
},
{
"id":"EX_pnto__R_e",
"name":"(R)-Pantothenate exchange",
"metabolites":{
"pnto__R_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pnto_R_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pnto__R_e"
],
"metanetx.reaction":[
"MNXR103051"
],
"rhea":[
"34978",
"34975",
"34976",
"34977"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09166"
]
}
},
{
"id":"EX_galctn__L_e",
"name":"L-Galactonate exchange",
"metabolites":{
"galctn__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_galctn_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_galctn__L_e"
],
"metanetx.reaction":[
"MNXR99959"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08577"
]
}
},
{
"id":"EX_ppa_e",
"name":"Propionate exchange",
"metabolites":{
"ppa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ppa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ppa_e"
],
"metanetx.reaction":[
"MNXR103094"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_xmp_e",
"name":"Xanthosine 5'-phosphate exchange",
"metabolites":{
"xmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_xmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_xmp_e"
],
"metanetx.reaction":[
"MNXR105231"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09380"
]
}
},
{
"id":"EX_xtsn_e",
"name":"Xanthosine exchange",
"metabolites":{
"xtsn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_xtsn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_xtsn_e"
],
"metanetx.reaction":[
"MNXR105247"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09382"
]
}
},
{
"id":"EX_xyl__D_e",
"name":"D-Xylose exchange",
"metabolites":{
"xyl__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_xyl_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_xyl__D_e"
],
"metanetx.reaction":[
"MNXR105270"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09385",
"rxn09650"
]
}
},
{
"id":"EX_xylu__L_e",
"name":"L-Xylulose exchange",
"metabolites":{
"xylu__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_xylu_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_xylu__L_e"
],
"metanetx.reaction":[
"MNXR138931"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09387"
]
}
},
{
"id":"EX_zn2_e",
"name":"Zinc exchange",
"metabolites":{
"zn2_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_zn2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_zn2_e"
],
"biocyc":[
"META:RXN0-12"
],
"metanetx.reaction":[
"MNXR105280"
],
"reactome.reaction":[
"R-RNO-442359",
"R-TGU-437085",
"R-TGU-437139",
"R-DRE-442393",
"R-HSA-437084",
"R-PFA-437136",
"R-CFA-442422",
"R-BTA-437139",
"R-SSC-442393",
"R-HSA-437129",
"R-XTR-435366",
"R-RNO-442422",
"R-RNO-437136",
"R-SCE-437085",
"R-DME-442422",
"R-DDI-442422",
"R-MMU-435366",
"R-RNO-442317",
"R-DDI-437136",
"R-CEL-442393",
"R-SSC-437139",
"R-CEL-442422",
"R-ATH-437085",
"R-MMU-437136",
"R-MMU-442317",
"R-DRE-442422",
"R-MMU-437139",
"R-SPO-435366",
"R-DME-437136",
"R-OSA-442393",
"R-XTR-437085",
"R-OSA-442422",
"R-CEL-435366",
"R-DRE-442317",
"R-BTA-442317",
"R-DDI-435366",
"R-SSC-442422",
"R-HSA-442387",
"R-HSA-437139",
"R-SCE-435366",
"R-MMU-437085",
"R-ATH-442422",
"R-HSA-442405",
"R-GGA-435366",
"R-CEL-442317",
"R-SSC-442317",
"R-DRE-442387",
"R-DRE-437085",
"R-MMU-437092",
"R-SCE-442422",
"R-CFA-442393",
"R-BTA-442393",
"R-SSC-437136",
"R-TGU-442422",
"R-BTA-442387",
"R-OSA-437085",
"R-RNO-442393",
"R-SCE-442393",
"R-RNO-437139",
"R-SSC-437085",
"R-XTR-442317",
"R-XTR-442393",
"R-GGA-437136",
"R-SCE-437136",
"R-XTR-437136",
"R-HSA-437085",
"R-ATH-442393",
"R-XTR-437139",
"R-BTA-437085",
"R-GGA-442317",
"R-GGA-437085",
"R-CEL-442387",
"R-SSC-435366",
"R-TGU-442387",
"R-SCE-437139",
"R-CEL-437136",
"R-MMU-442387",
"R-MMU-442422",
"R-BTA-442422",
"R-RNO-435366",
"R-RNO-442387",
"R-CFA-437085",
"R-DME-442317",
"R-HSA-435366",
"R-DRE-437139",
"R-TGU-437136",
"R-TGU-435366",
"R-SCE-442387",
"R-HSA-442422",
"R-ATH-437136",
"R-HSA-442317",
"R-HSA-442393",
"R-CEL-437139",
"R-HSA-442345",
"R-GGA-442387",
"R-CFA-442317",
"R-GGA-442422",
"R-DRE-437136",
"R-MMU-442319",
"R-MMU-442393",
"R-GGA-437139",
"R-OSA-437136",
"R-BTA-435366",
"R-CEL-437085",
"R-XTR-442387",
"R-SSC-442387",
"R-DRE-435366",
"R-DDI-437085",
"R-MMU-437145",
"R-CFA-442387",
"R-SPO-442393",
"R-TGU-442317",
"R-DME-442393",
"R-XTR-442422",
"R-SCE-442317",
"R-SPO-437085",
"R-CFA-435366",
"R-RNO-437085",
"R-CFA-437139",
"R-HSA-435375",
"R-RNO-437094",
"R-CFA-437136",
"R-HSA-437136",
"R-DME-435366"
],
"rhea":[
"29353",
"29351",
"29352",
"29354"
],
"sabiork":[
"13042"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09391",
"rxn09390"
]
}
},
{
"id":"EX_ppal_e",
"name":"Propanal exchange",
"metabolites":{
"ppal_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ppal_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ppal_e"
],
"metanetx.reaction":[
"MNXR103071"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09169",
"rxn09170"
]
}
},
{
"id":"EX_pppn_e",
"name":"Phenylpropanoate exchange",
"metabolites":{
"pppn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pppn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pppn_e"
],
"biocyc":[
"META:TRANS-RXN0-282"
],
"metanetx.reaction":[
"MNXR103136"
],
"rhea":[
"29748",
"29750",
"29749",
"29747"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09183"
]
}
},
{
"id":"EX_ppt_e",
"name":"Phosphonate exchange",
"metabolites":{
"ppt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ppt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ppt_e"
],
"metanetx.reaction":[
"MNXR103151"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09185"
]
}
},
{
"id":"EX_pro__L_e",
"name":"L-Proline exchange",
"metabolites":{
"pro__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pro_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pro__L_e"
],
"metanetx.reaction":[
"MNXR103213"
],
"sabiork":[
"12183",
"13974"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09720",
"rxn09193",
"rxn11339",
"rxn10945"
]
}
},
{
"id":"BIOMASS_Ec_iAF1260_core_59p81M",
"name":"E. coli biomass objective function (iAF1260) - core - with 59.81 GAM estimate",
"metabolites":{
"10fthf_c":-0.000223,
"2ohph_c":-0.000223,
"adp_c":59.81,
"ala__L_c":-0.5137,
"amet_c":-0.000223,
"arg__L_c":-0.2958,
"asn__L_c":-0.2411,
"asp__L_c":-0.2411,
"atp_c":-59.984,
"ca2_c":-0.004737,
"cl_c":-0.004737,
"coa_c":-0.000576,
"cobalt2_c":-0.003158,
"ctp_c":-0.1335,
"cu2_c":-0.003158,
"cys__L_c":-0.09158,
"datp_c":-0.02617,
"dctp_c":-0.02702,
"dgtp_c":-0.02702,
"dttp_c":-0.02617,
"fad_c":-0.000223,
"fe2_c":-0.007106,
"fe3_c":-0.007106,
"gln__L_c":-0.2632,
"glu__L_c":-0.2632,
"gly_c":-0.6126,
"gtp_c":-0.2151,
"h2o_c":-54.462,
"h_c":59.81,
"his__L_c":-0.09474,
"ile__L_c":-0.2905,
"k_c":-0.1776,
"kdo2lipid4_e":-0.01945,
"leu__L_c":-0.4505,
"lys__L_c":-0.3432,
"met__L_c":-0.1537,
"mg2_c":-0.007895,
"mlthf_c":-0.000223,
"mn2_c":-0.003158,
"mobd_c":-0.003158,
"murein5px4p_p":-0.01389,
"nad_c":-0.001831,
"nadp_c":-0.000447,
"nh4_c":-0.011843,
"pe160_c":-0.02233,
"pe160_p":-0.04148,
"pe161_c":-0.02632,
"pe161_p":-0.04889,
"phe__L_c":-0.1759,
"pheme_c":-0.000223,
"pi_c":59.806,
"ppi_c":0.7739,
"pro__L_c":-0.2211,
"pydx5p_c":-0.000223,
"ribflv_c":-0.000223,
"ser__L_c":-0.2158,
"sheme_c":-0.000223,
"so4_c":-0.003948,
"thf_c":-0.000223,
"thmpp_c":-0.000223,
"thr__L_c":-0.2537,
"trp__L_c":-0.05684,
"tyr__L_c":-0.1379,
"udcpdp_c":-5.5e-05,
"utp_c":-0.1441,
"val__L_c":-0.4232,
"zn2_c":-0.003158
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Biomass and maintenance functions",
"notes":{
"original_bigg_ids":[
"Ec_biomass_iAF1260_core_59p81M"
]
},
"annotation":{
"bigg.reaction":[
"BIOMASS_Ec_iAF1260_core_59p81M"
],
"metanetx.reaction":[
"MNXR138121"
],
"sbo":"SBO:0000629"
}
},
{
"id":"EX_progly_e",
"name":"L-Prolinylglycine exchange",
"metabolites":{
"progly_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_progly_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_progly_e"
],
"metanetx.reaction":[
"MNXR103191"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09190"
]
}
},
{
"id":"EX_galt_e",
"name":"Galactitol exchange",
"metabolites":{
"galt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_galt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_galt_e"
],
"metanetx.reaction":[
"MNXR100019"
],
"rhea":[
"33146",
"33144",
"33143",
"33145"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08587"
]
}
},
{
"id":"EX_psclys_e",
"name":"Psicoselysine exchange",
"metabolites":{
"psclys_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_psclys_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_psclys_e"
],
"biocyc":[
"META:TRANS-RXN0-418"
],
"metanetx.reaction":[
"MNXR103228"
],
"rhea":[
"28450",
"28453",
"28451",
"28452"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09196"
]
}
},
{
"id":"EX_pser__L_e",
"name":"O-Phospho-L-serine exchange",
"metabolites":{
"pser__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pser_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pser__L_e"
],
"metanetx.reaction":[
"MNXR103246"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09204"
]
}
},
{
"id":"F6PA",
"name":"Fructose 6-phosphate aldolase",
"metabolites":{
"dha_c":1.0,
"f6p_c":-1.0,
"g3p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4109",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"F6PA"
]
},
"annotation":{
"bigg.reaction":[
"F6PA"
],
"biocyc":[
"META:RXN0-313"
],
"ec-code":[
"4.1.2"
],
"metanetx.reaction":[
"MNXR99075"
],
"rhea":[
"28002",
"28003",
"28004",
"28005"
],
"sbo":"SBO:0000176"
}
},
{
"id":"F6PP",
"name":"D-fructose 6-phosphate phosphatase",
"metabolites":{
"f6p_c":-1.0,
"fru_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0840 or STM0842",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"F6PP"
]
},
"annotation":{
"bigg.reaction":[
"F6PP"
],
"metanetx.reaction":[
"MNXR99077"
],
"sbo":"SBO:0000176"
}
},
{
"id":"F6Pt6_2pp",
"name":"Fructose-6-phosphate transport via phosphate antiport (periplasm)",
"metabolites":{
"f6p_c":1.0,
"f6p_p":-1.0,
"pi_c":-2.0,
"pi_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3787",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"F6Pt6_2pp"
]
},
"annotation":{
"bigg.reaction":[
"F6Pt6_2pp"
],
"metanetx.reaction":[
"MNXR99079"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_ptrc_e",
"name":"Putrescine exchange",
"metabolites":{
"ptrc_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ptrc_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ptrc_e"
],
"metanetx.reaction":[
"MNXR103339"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09216",
"rxn13393"
]
}
},
{
"id":"EX_galur_e",
"name":"D-Galacturonate exchange",
"metabolites":{
"galur_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_galur_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_galur_e"
],
"metanetx.reaction":[
"MNXR100021"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08589"
]
}
},
{
"id":"EX_pyr_e",
"name":"Pyruvate exchange",
"metabolites":{
"pyr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pyr_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pyr_e"
],
"biocyc":[
"META:TRANS-RXN0-506",
"META:TRANS-RXN0-570"
],
"metanetx.reaction":[
"MNXR103384"
],
"sabiork":[
"12168"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10929",
"rxn09218"
]
}
},
{
"id":"F6Ptex",
"name":"Fructose 6-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"f6p_e":-1.0,
"f6p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"F6Ptex"
]
},
"annotation":{
"bigg.reaction":[
"F6Ptex"
],
"metanetx.reaction":[
"MNXR99076"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FA100ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"dcaACP_c":-1.0,
"dca_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0403",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA100ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA100ACPHi"
],
"ec-code":[
"3.1.2.21"
],
"metanetx.reaction":[
"MNXR99086"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA120ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"ddca_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0403",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA120ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA120ACPHi"
],
"ec-code":[
"3.1.2.21"
],
"metanetx.reaction":[
"MNXR99087"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_r5p_e",
"name":"Alpha-D-Ribose 5-phosphate exchange",
"metabolites":{
"r5p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_r5p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_r5p_e"
],
"metanetx.reaction":[
"MNXR103411"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_gam6p_e",
"name":"D-Glucosamine 6-phosphate exchange",
"metabolites":{
"gam6p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gam6p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gam6p_e"
],
"metanetx.reaction":[
"MNXR100031"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13642",
"rxn08591",
"rxn05568"
]
}
},
{
"id":"EX_rib__D_e",
"name":"D-Ribose exchange",
"metabolites":{
"rib__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_rib_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_rib__D_e"
],
"metanetx.reaction":[
"MNXR104036"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09228"
]
}
},
{
"id":"EX_rmn_e",
"name":"L-Rhamnose exchange",
"metabolites":{
"rmn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_rmn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_rmn_e"
],
"metanetx.reaction":[
"MNXR104042"
],
"rhea":[
"34995",
"34998",
"34997",
"34996"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09229"
]
}
},
{
"id":"FA140ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"myrsACP_c":-1.0,
"ttdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0403",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA140ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA140ACPHi"
],
"ec-code":[
"3.1.2.14"
],
"metanetx.reaction":[
"MNXR99089"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA141ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"tdeACP_c":-1.0,
"ttdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0403",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA141ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA141ACPHi"
],
"ec-code":[
"3.1.2.14"
],
"metanetx.reaction":[
"MNXR99093"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA160ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdca_c":1.0,
"palmACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0403",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA160ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA160ACPHi"
],
"ec-code":[
"3.1.2.14"
],
"metanetx.reaction":[
"MNXR99097"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_sbt__D_e",
"name":"D-Sorbitol exchange",
"metabolites":{
"sbt__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_sbt_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_sbt__D_e"
],
"metanetx.reaction":[
"MNXR104288"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09243",
"rxn09662"
]
}
},
{
"id":"EX_gam_e",
"name":"D-Glucosamine exchange",
"metabolites":{
"gam_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gam_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gam_e"
],
"metanetx.reaction":[
"MNXR100035"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08593"
]
}
},
{
"id":"EX_ser__D_e",
"name":"D-Serine exchange",
"metabolites":{
"ser__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ser_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ser__D_e"
],
"biocyc":[
"META:TRANS-RXN0-495"
],
"metanetx.reaction":[
"MNXR97799"
],
"rhea":[
"29457",
"29456",
"29455",
"29458"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08373",
"rxn10965"
]
}
},
{
"id":"FA161ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdcea_c":1.0,
"hdeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0403",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA161ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA161ACPHi"
],
"ec-code":[
"3.1.2.14"
],
"metanetx.reaction":[
"MNXR99103"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FA80ACPHi",
"name":"Fatty-acyl-ACP hydrolase",
"metabolites":{
"ACP_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ocACP_c":-1.0,
"octa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0403",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FA80ACPHi"
]
},
"annotation":{
"bigg.reaction":[
"FA80ACPHi"
],
"ec-code":[
"3.1.2.21"
],
"metanetx.reaction":[
"MNXR99125"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAE100",
"name":"Fatty-acid-CoA thioesterase (decanoate)",
"metabolites":{
"coa_c":1.0,
"dca_c":1.0,
"dcacoa_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE100"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE100"
],
"ec-code":[
"3.1.2.2"
],
"metanetx.reaction":[
"MNXR99127"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_ser__L_e",
"name":"L-Serine exchange",
"metabolites":{
"ser__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ser_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ser__L_e"
],
"metanetx.reaction":[
"MNXR104354"
],
"reactome.reaction":[
"R-DRE-8932980",
"R-CFA-8932980",
"R-SSC-8932980",
"R-MMU-8932980",
"R-RNO-8932980",
"R-BTA-8932980",
"R-DME-8932980",
"R-SPO-8932980",
"R-TGU-8932980",
"R-GGA-8932980",
"R-OSA-8932980",
"R-XTR-8932980",
"R-DDI-8932980",
"R-SCE-8932980",
"R-HSA-8932980",
"R-CEL-8932980",
"R-ATH-8932980"
],
"rhea":[
"35033",
"35034",
"35032",
"35031"
],
"sabiork":[
"13463",
"13973"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09248",
"rxn10999",
"rxn13110"
]
}
},
{
"id":"EX_gbbtn_e",
"name":"Gamma-butyrobetaine exchange",
"metabolites":{
"gbbtn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gbbtn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gbbtn_e"
],
"metanetx.reaction":[
"MNXR100053"
],
"rhea":[
"32838",
"32837",
"32835",
"32836"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08595"
]
}
},
{
"id":"EX_skm_e",
"name":"Shikimate exchange",
"metabolites":{
"skm_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_skm_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_skm_e"
],
"metanetx.reaction":[
"MNXR104394"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09257"
]
}
},
{
"id":"EX_so2_e",
"name":"Sulfur dioxide exchange",
"metabolites":{
"so2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_so2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_so2_e"
],
"metanetx.reaction":[
"MNXR104456"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09258",
"rxn09259"
]
}
},
{
"id":"EX_so3_e",
"name":"Sulfite exchange",
"metabolites":{
"so3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_so3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_so3_e"
],
"metanetx.reaction":[
"MNXR104460"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12453",
"rxn09260"
]
}
},
{
"id":"EX_so4_e",
"name":"Sulfate exchange",
"metabolites":{
"so4_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_so4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_so4_e"
],
"metanetx.reaction":[
"MNXR104469"
],
"reactome.reaction":[
"R-TGU-8875871",
"R-DRE-8875871",
"R-GGA-8875871",
"R-BTA-8875871",
"R-SCE-8875871",
"R-HSA-8875871",
"R-SPO-8875871",
"R-XTR-8875871",
"R-MMU-8875871",
"R-RNO-8875871",
"R-SSC-8875871",
"R-PFA-8875871",
"R-ATH-8875871",
"R-CFA-8875871",
"R-OSA-8875871",
"R-DME-8875871"
],
"rhea":[
"34983",
"34984",
"34986",
"34985"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09261",
"rxn05238"
]
}
},
{
"id":"FACOAE120",
"name":"Fatty-acid-CoA thioesterase (dodecanoate)",
"metabolites":{
"coa_c":1.0,
"ddca_c":1.0,
"ddcacoa_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE120"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE120"
],
"ec-code":[
"3.1.2.2"
],
"metanetx.reaction":[
"MNXR99128"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAE140",
"name":"Fatty-acid-CoA thioesterase (tetradecanoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"tdcoa_c":-1.0,
"ttdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE140"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE140"
],
"ec-code":[
"3.1.2.2"
],
"metanetx.reaction":[
"MNXR99129"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAE141",
"name":"Fatty-acid-CoA thioesterase (tetradecenoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"tdecoa_c":-1.0,
"ttdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE141"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE141"
],
"metanetx.reaction":[
"MNXR99130"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAE160",
"name":"Fatty-acid-CoA thioesterase (hexadecanoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdca_c":1.0,
"pmtcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE160"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE160"
],
"biocyc":[
"META:PALMITOYL-COA-HYDROLASE-RXN"
],
"ec-code":[
"3.1.2.22",
"3.1.2.2"
],
"kegg.reaction":[
"R01274"
],
"metanetx.reaction":[
"MNXR99131"
],
"rhea":[
"16648",
"16645",
"16646",
"16647"
],
"sabiork":[
"1490"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00943"
]
}
},
{
"id":"FACOAE161",
"name":"Fatty-acid-CoA thioesterase (hexadecenoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdcea_c":1.0,
"hdcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE161"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE161"
],
"metanetx.reaction":[
"MNXR99132"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FACOAE180",
"name":"Fatty-acid-CoA thioesterase (octadecanoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ocdca_c":1.0,
"stcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE180"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE180"
],
"biocyc":[
"META:RXN-9624"
],
"ec-code":[
"3.1.2.2"
],
"kegg.reaction":[
"R08174"
],
"metanetx.reaction":[
"MNXR99133"
],
"rhea":[
"30142",
"30140",
"30141",
"30139"
],
"sabiork":[
"6573"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08444"
]
}
},
{
"id":"EX_spmd_e",
"name":"Spermidine exchange",
"metabolites":{
"spmd_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_spmd_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_spmd_e"
],
"metanetx.reaction":[
"MNXR104495"
],
"rhea":[
"35040",
"35039",
"35042",
"35041"
],
"sabiork":[
"13767"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13397",
"rxn09266"
]
}
},
{
"id":"EX_succ_e",
"name":"Succinate exchange",
"metabolites":{
"succ_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_succ_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_succ_e"
],
"biocyc":[
"META:TRANS-RXN0-552"
],
"metanetx.reaction":[
"MNXR104619"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10952",
"rxn09271"
]
}
},
{
"id":"FACOAE181",
"name":"Fatty-acid-CoA thioesterase (octadecenoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ocdcea_c":1.0,
"odecoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE181"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE181"
],
"metanetx.reaction":[
"MNXR99134"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_sucr_e",
"name":"Sucrose exchange",
"metabolites":{
"sucr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_sucr_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_sucr_e"
],
"metanetx.reaction":[
"MNXR104641"
],
"sabiork":[
"13123"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09275"
]
}
},
{
"id":"FACOAE60",
"name":"Fatty-acid-CoA thioesterase (hexanoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hxa_c":1.0,
"hxcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE60"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE60"
],
"metanetx.reaction":[
"MNXR99139"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_gdp_e",
"name":"GDP exchange",
"metabolites":{
"gdp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gdp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gdp_e"
],
"metanetx.reaction":[
"MNXR100096"
],
"reactome.reaction":[
"R-HSA-111812"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08600",
"rxn09815"
]
}
},
{
"id":"FACOAE80",
"name":"Fatty-acid-CoA thioesterase (octanoate)",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"occoa_c":-1.0,
"octa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0464",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAE80"
]
},
"annotation":{
"bigg.reaction":[
"FACOAE80"
],
"metanetx.reaction":[
"MNXR99140"
],
"rhea":[
"30143",
"30144",
"30145",
"30146"
],
"sabiork":[
"6581"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08447"
]
}
},
{
"id":"FACOAL100t2pp",
"name":"Fatty-acid-CoA ligase (decanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"dca_p":-1.0,
"dcacoa_c":1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1818 or STM1350",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL100t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL100t2pp"
],
"metanetx.reaction":[
"MNXR99142"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_sulfac_e",
"name":"Sulfoacetate exchange",
"metabolites":{
"sulfac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_sulfac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_sulfac_e"
],
"metanetx.reaction":[
"MNXR104646"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09278"
]
}
},
{
"id":"EX_tartr__L_e",
"name":"L-tartrate exchange",
"metabolites":{
"tartr__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tartr_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tartr__L_e"
],
"metanetx.reaction":[
"MNXR104724"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09284"
]
}
},
{
"id":"EX_taur_e",
"name":"Taurine exchange",
"metabolites":{
"taur_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_taur_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_taur_e"
],
"metanetx.reaction":[
"MNXR104733"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09286",
"rxn13402"
]
}
},
{
"id":"EX_tcynt_e",
"name":"Thiocyanate exchange",
"metabolites":{
"tcynt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tcynt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tcynt_e"
],
"metanetx.reaction":[
"MNXR104749"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09287"
]
}
},
{
"id":"FACOAL120t2pp",
"name":"Fatty-acid-CoA ligase (dodecanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ddca_p":-1.0,
"ddcacoa_c":1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1350 or STM1818",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL120t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL120t2pp"
],
"metanetx.reaction":[
"MNXR99144"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_glc__D_e",
"name":"D-Glucose exchange",
"metabolites":{
"glc__D_e":-1.0
},
"lower_bound":-5.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glc_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glc__D_e"
],
"biocyc":[
"META:TRANS-RXN0-574"
],
"metanetx.reaction":[
"MNXR100188"
],
"sabiork":[
"7002",
"601"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09875",
"rxn09679",
"rxn08617"
]
}
},
{
"id":"FACOAL140t2pp",
"name":"Fatty-acid-CoA ligase (tetradecanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0,
"tdcoa_c":1.0,
"ttdca_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1818 or STM1350",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL140t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL140t2pp"
],
"metanetx.reaction":[
"MNXR99147"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_thm_e",
"name":"Thiamin exchange",
"metabolites":{
"thm_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_thm_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_thm_e"
],
"metanetx.reaction":[
"MNXR131128"
],
"sabiork":[
"12167"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn11006",
"rxn09300"
]
}
},
{
"id":"EX_thr__L_e",
"name":"L-Threonine exchange",
"metabolites":{
"thr__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_thr_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_thr__L_e"
],
"metanetx.reaction":[
"MNXR104852"
],
"rhea":[
"35022",
"35020",
"35019",
"35021"
],
"sabiork":[
"13464"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09307",
"rxn13117",
"rxn10898"
]
}
},
{
"id":"FACOAL141t2pp",
"name":"Fatty-acid-CoA ligase (tetradecenoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ppi_c":1.0,
"tdecoa_c":1.0,
"ttdcea_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1350 or STM1818",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL141t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL141t2pp"
],
"metanetx.reaction":[
"MNXR99149"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_glcn_e",
"name":"D-Gluconate exchange",
"metabolites":{
"glcn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glcn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glcn_e"
],
"metanetx.reaction":[
"MNXR100210"
],
"sabiork":[
"13786"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12424",
"rxn08610"
]
}
},
{
"id":"FACOAL160t2pp",
"name":"Fatty-acid-CoA ligase (hexadecanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"hdca_p":-1.0,
"pmtcoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1350 or STM1818",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL160t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL160t2pp"
],
"metanetx.reaction":[
"MNXR99155"
],
"rhea":[
"51716",
"51719",
"51717",
"51718"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_thrp_e",
"name":"L-Threonine O-3-phosphate exchange",
"metabolites":{
"thrp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_thrp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_thrp_e"
],
"metanetx.reaction":[
"MNXR104845"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09303"
]
}
},
{
"id":"EX_thym_e",
"name":"Thymine exchange",
"metabolites":{
"thym_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_thym_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_thym_e"
],
"biocyc":[
"META:TRANS-RXN0-524"
],
"metanetx.reaction":[
"MNXR104853"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09309"
]
}
},
{
"id":"EX_glcr_e",
"name":"D-Glucarate exchange",
"metabolites":{
"glcr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glcr_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glcr_e"
],
"biocyc":[
"META:TRANS-RXN0-204"
],
"metanetx.reaction":[
"MNXR100222"
],
"rhea":[
"28477",
"28476",
"28474",
"28475"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12442",
"rxn08614"
]
}
},
{
"id":"EX_thymd_e",
"name":"Thymidine exchange",
"metabolites":{
"thymd_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_thymd_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_thymd_e"
],
"metanetx.reaction":[
"MNXR104821"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10916",
"rxn09299"
]
}
},
{
"id":"EX_tma_e",
"name":"Trimethylamine exchange",
"metabolites":{
"tma_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tma_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tma_e"
],
"metanetx.reaction":[
"MNXR104884"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09318"
]
}
},
{
"id":"FACOAL161t2pp",
"name":"Fatty-acid-CoA ligase (hexadecenoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"hdcea_p":-1.0,
"hdcoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1818 or STM1350",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL161t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL161t2pp"
],
"metanetx.reaction":[
"MNXR99158"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL180t2pp",
"name":"Fatty-acid-CoA ligase (octadecanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ocdca_p":-1.0,
"ppi_c":1.0,
"stcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1818 or STM1350",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL180t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL180t2pp"
],
"metanetx.reaction":[
"MNXR99167"
],
"rhea":[
"51723",
"51720",
"51722",
"51721"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL181t2pp",
"name":"Fatty-acid-CoA ligase (octadecenoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"ocdcea_p":-1.0,
"odecoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1818 or STM1350",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL181t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL181t2pp"
],
"metanetx.reaction":[
"MNXR99173"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL60t2pp",
"name":"Fatty-acid-CoA ligase (hexanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"hxa_p":-1.0,
"hxcoa_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1818 or STM1350",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL60t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL60t2pp"
],
"metanetx.reaction":[
"MNXR99204"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FACOAL80t2pp",
"name":"Fatty-acid-CoA ligase (octanoate transport via vectoral Co-A coupling)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"h_c":1.0,
"h_p":-1.0,
"occoa_c":1.0,
"octa_p":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1818 or STM1350",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"FACOAL80t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FACOAL80t2pp"
],
"metanetx.reaction":[
"MNXR99206"
],
"rhea":[
"51824",
"51825",
"51827",
"51826"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_tmao_e",
"name":"Trimethylamine N-oxide exchange",
"metabolites":{
"tmao_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tmao_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tmao_e"
],
"metanetx.reaction":[
"MNXR104882"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09317"
]
}
},
{
"id":"EX_tre_e",
"name":"Trehalose exchange",
"metabolites":{
"tre_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tre_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tre_e"
],
"metanetx.reaction":[
"MNXR104933"
],
"rhea":[
"17631",
"17632",
"17630",
"17629"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09323"
]
}
},
{
"id":"EX_trp__L_e",
"name":"L-Tryptophan exchange",
"metabolites":{
"trp__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_trp_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_trp__L_e"
],
"biocyc":[
"META:RXN66-449"
],
"metanetx.reaction":[
"MNXR104949"
],
"sabiork":[
"14017",
"13425"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09327",
"rxn05222"
]
}
},
{
"id":"EX_tsul_e",
"name":"Thiosulfate exchange",
"metabolites":{
"tsul_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tsul_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tsul_e"
],
"metanetx.reaction":[
"MNXR104966"
],
"rhea":[
"32808",
"32810",
"32807",
"32809"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09330"
]
}
},
{
"id":"EX_ttdca_e",
"name":"Tetradecanoate (n-C14:0) exchange",
"metabolites":{
"ttdca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ttdca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ttdca_e"
],
"metanetx.reaction":[
"MNXR99092"
],
"sbo":"SBO:0000627"
}
},
{
"id":"FADRx_copy1",
"name":"FAD reductase",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FADRx",
"FLAVNADR"
]
},
"annotation":{
"bigg.reaction":[
"FADRx"
],
"biocyc":[
"META:RXN-8506"
],
"ec-code":[
"1.5.1.37",
"1.5.1.36",
"1.5.1.45"
],
"kegg.reaction":[
"R09748"
],
"metanetx.reaction":[
"MNXR99215"
],
"rhea":[
"30150",
"30149",
"30147",
"30148"
],
"sabiork":[
"7290"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08458"
]
}
},
{
"id":"EX_ttdcea_e",
"name":"Tetradecenoate (n-C14:1) exchange",
"metabolites":{
"ttdcea_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ttdcea_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ttdcea_e"
],
"metanetx.reaction":[
"MNXR99096"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_glcur1p_e",
"name":"D-Glucuronate 1-phosphate exchange",
"metabolites":{
"glcur1p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glcur1p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glcur1p_e"
],
"metanetx.reaction":[
"MNXR100231"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08621"
]
}
},
{
"id":"EX_tungs_e",
"name":"Tungstate exchange",
"metabolites":{
"tungs_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tungs_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tungs_e"
],
"metanetx.reaction":[
"MNXR104979"
],
"rhea":[
"32842",
"32841",
"32840",
"32839"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09334"
]
}
},
{
"id":"EX_tym_e",
"name":"Tyramine exchange",
"metabolites":{
"tym_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tym_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tym_e"
],
"metanetx.reaction":[
"MNXR104985"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09335"
]
}
},
{
"id":"FADRx2",
"name":"FAD reductase",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2947 and STM2948",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FADRx2"
]
},
"annotation":{
"bigg.reaction":[
"FADRx2"
],
"ec-code":[
"1.5.1.45",
"1.5.1.30"
],
"kegg.reaction":[
"R09520"
],
"metanetx.reaction":[
"MNXR99216"
],
"rhea":[
"30154",
"30151",
"30153",
"30152"
],
"sabiork":[
"7292"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08459"
]
}
},
{
"id":"FALDtex",
"name":"Formaldehyde transport via diffusion (extracellular to periplasm)",
"metabolites":{
"fald_e":-1.0,
"fald_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FALDtex"
]
},
"annotation":{
"bigg.reaction":[
"FALDtex"
],
"metanetx.reaction":[
"MNXR99238"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08461",
"rxn08462"
]
}
},
{
"id":"FALDtpp",
"name":"Formaldehyde transport via diffusion (periplasm)",
"metabolites":{
"fald_c":1.0,
"fald_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FALDtpp"
]
},
"annotation":{
"bigg.reaction":[
"FALDtpp"
],
"metanetx.reaction":[
"MNXR99238"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08461",
"rxn08462"
]
}
},
{
"id":"EX_tyr__L_e",
"name":"L-Tyrosine exchange",
"metabolites":{
"tyr__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tyr_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tyr__L_e"
],
"biocyc":[
"META:RXN66-446"
],
"metanetx.reaction":[
"MNXR105002"
],
"sabiork":[
"13471"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09339",
"rxn10974"
]
}
},
{
"id":"EX_glcur_e",
"name":"D-Glucuronate exchange",
"metabolites":{
"glcur_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glcur_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glcur_e"
],
"metanetx.reaction":[
"MNXR100235"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08623"
]
}
},
{
"id":"EX_tyrp_e",
"name":"Phosphotyrosine exchange",
"metabolites":{
"tyrp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tyrp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tyrp_e"
],
"metanetx.reaction":[
"MNXR104999"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09337"
]
}
},
{
"id":"EX_uacgam_e",
"name":"UDP-N-acetyl-D-glucosamine exchange",
"metabolites":{
"uacgam_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_uacgam_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_uacgam_e"
],
"metanetx.reaction":[
"MNXR105021"
],
"reactome.reaction":[
"R-BTA-742354",
"R-SCE-742354",
"R-CEL-742354",
"R-SSC-742354",
"R-HSA-742354",
"R-CFA-742354",
"R-DDI-742354",
"R-MMU-742354",
"R-RNO-742354",
"R-SPO-742354",
"R-DME-742354",
"R-TGU-742354",
"R-GGA-742354",
"R-DRE-742354"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09342"
]
}
},
{
"id":"FALGTHLs",
"name":"Formaldehyde glutathione ligase (spontaneous)",
"metabolites":{
"fald_c":-1.0,
"gthrd_c":-1.0,
"hmgth_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FALGTHLs"
]
},
"annotation":{
"bigg.reaction":[
"FALGTHLs"
],
"biocyc":[
"META:RXN-2961"
],
"ec-code":[
"4.4.1.22"
],
"kegg.reaction":[
"R06982"
],
"metanetx.reaction":[
"MNXR99239"
],
"rhea":[
"22488",
"22490",
"22491",
"22489"
],
"sabiork":[
"7488"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08463",
"rxn04791"
]
}
},
{
"id":"FBA",
"name":"Fructose-bisphosphate aldolase",
"metabolites":{
"dhap_c":1.0,
"fdp_c":-1.0,
"g3p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2141 or STM3068",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"FBA"
]
},
"annotation":{
"bigg.reaction":[
"FBA"
],
"ec-code":[
"4.1.2.13"
],
"kegg.reaction":[
"R01068"
],
"metanetx.reaction":[
"MNXR99459"
],
"rhea":[
"14729",
"14732",
"14731",
"14730"
],
"sabiork":[
"1338"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00786"
]
}
},
{
"id":"EX_udpacgal_e",
"name":"UDP-N-acetyl-D-galactosamine exchange",
"metabolites":{
"udpacgal_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_udpacgal_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_udpacgal_e"
],
"metanetx.reaction":[
"MNXR105046"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09347"
]
}
},
{
"id":"EX_gln__L_e",
"name":"L-Glutamine exchange",
"metabolites":{
"gln__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gln_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gln__L_e"
],
"biocyc":[
"META:TRANS-RXN-233"
],
"metanetx.reaction":[
"MNXR100259"
],
"reactome.reaction":[
"R-HSA-212651",
"R-BTA-212614",
"R-RNO-212614",
"R-SSC-212614",
"R-MMU-212614",
"R-HSA-212614",
"R-GGA-212614",
"R-CFA-212614",
"R-TGU-212614",
"R-SCE-212614"
],
"sabiork":[
"13421"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08625",
"rxn10928"
]
}
},
{
"id":"EX_udpg_e",
"name":"UDPglucose exchange",
"metabolites":{
"udpg_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_udpg_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_udpg_e"
],
"metanetx.reaction":[
"MNXR143086"
],
"sabiork":[
"11025"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09353"
]
}
},
{
"id":"FBP",
"name":"Fructose-bisphosphatase",
"metabolites":{
"f6p_c":1.0,
"fdp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4085 or STM4415",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"FBP"
]
},
"annotation":{
"bigg.reaction":[
"FBP"
],
"ec-code":[
"3.1.3.11"
],
"metanetx.reaction":[
"MNXR99465"
],
"rhea":[
"11067",
"11065",
"11066",
"11064"
],
"sabiork":[
"2084"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FCI",
"name":"L-fucose isomerase",
"metabolites":{
"fcl__L_c":1.0,
"fuc__L_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2976",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"FCI"
]
},
"annotation":{
"bigg.reaction":[
"FCI"
],
"ec-code":[
"5.3.1.3"
],
"metanetx.reaction":[
"MNXR99468"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FCLK",
"name":"L-fuculokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fc1p_c":1.0,
"fcl__L_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2977",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"FCLK"
]
},
"annotation":{
"bigg.reaction":[
"FCLK"
],
"biocyc":[
"META:FUCULOKIN-RXN"
],
"ec-code":[
"2.7.1.51"
],
"kegg.reaction":[
"R03241"
],
"metanetx.reaction":[
"MNXR99469"
],
"rhea":[
"12376",
"12378",
"12379",
"12377"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02319"
]
}
},
{
"id":"EX_glu__L_e",
"name":"L-Glutamate exchange",
"metabolites":{
"glu__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glu_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glu__L_e"
],
"biocyc":[
"META:TRANS-RXN-234",
"META:TRANS-RXN-232"
],
"metanetx.reaction":[
"MNXR100301"
],
"reactome.reaction":[
"R-HSA-212658",
"R-TGU-210439",
"R-GGA-210439",
"R-XTR-210439",
"R-RNO-210439",
"R-CFA-210439",
"R-CEL-210439",
"R-DME-210439",
"R-SSC-210439",
"R-HSA-210439",
"R-DRE-210439",
"R-MMU-210439",
"R-BTA-210439"
],
"sabiork":[
"12283"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08633",
"rxn09750",
"rxn13304",
"rxn13120",
"rxn10917"
]
}
},
{
"id":"FCLPA",
"name":"L-fuculose 1-phosphate aldolase",
"metabolites":{
"dhap_c":1.0,
"fc1p_c":-1.0,
"lald__L_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2974 or STM2916",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"FCLPA"
]
},
"annotation":{
"bigg.reaction":[
"FCLPA"
],
"biocyc":[
"META:FUCPALDOL-RXN"
],
"ec-code":[
"4.1.2.17"
],
"kegg.reaction":[
"R02262"
],
"metanetx.reaction":[
"MNXR99470"
],
"rhea":[
"12934",
"12936",
"12935",
"12933"
],
"sabiork":[
"2229"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01620"
]
}
},
{
"id":"EX_gly_e",
"name":"Glycine exchange",
"metabolites":{
"gly_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gly_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gly_e"
],
"biocyc":[
"META:TRANS-RXN0-537"
],
"metanetx.reaction":[
"MNXR100371"
],
"reactome.reaction":[
"R-CEL-351963",
"R-GGA-351963",
"R-SSC-351963",
"R-TGU-351963",
"R-BTA-351963",
"R-DRE-351963",
"R-RNO-351963",
"R-MMU-351963",
"R-CFA-351963",
"R-HSA-351963"
],
"sabiork":[
"13462"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05218",
"rxn08662",
"rxn13111"
]
}
},
{
"id":"FCLT",
"name":"Ferrochelatase",
"metabolites":{
"fe2_c":-1.0,
"h_c":2.0,
"pheme_c":1.0,
"ppp9_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0489",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FCLT"
]
},
"annotation":{
"bigg.reaction":[
"FCLT"
],
"biocyc":[
"META:PROTOHEMEFERROCHELAT-RXN"
],
"ec-code":[
"4.99.1.1"
],
"kegg.reaction":[
"R00310"
],
"metanetx.reaction":[
"MNXR99471"
],
"rhea":[
"22585",
"22586",
"22584",
"22587"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FDH4pp",
"name":"Formate dehydrogenase (quinone-8) (periplasm)",
"metabolites":{
"co2_p":1.0,
"for_p":-1.0,
"h_c":-2.0,
"h_p":1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM4035 and STM4036 and STM4037) or (STM1570 and STM1569 and STM1568)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"FDH4pp"
]
},
"annotation":{
"bigg.reaction":[
"FDH4pp"
],
"metanetx.reaction":[
"MNXR99478"
],
"rhea":[
"29077#1",
"29075#1",
"29078#1",
"29076#1"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FE3DHBZStonex",
"name":"Ferric 2,3-dihydroxybenzoylserine transport via ton system (extracellular)",
"metabolites":{
"fe3dhbzs_e":-1.0,
"fe3dhbzs_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2199 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"FE3DHBZStonex"
]
},
"annotation":{
"bigg.reaction":[
"FE3DHBZStonex"
],
"metanetx.reaction":[
"MNXR99512"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08482"
]
}
},
{
"id":"FE3HOXR1",
"name":"Fe(III)hydroxamate reductase",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"fe3hox_c":-2.0,
"fe3hox_un_c":2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3HOXR1"
]
},
"annotation":{
"bigg.reaction":[
"FE3HOXR1"
],
"metanetx.reaction":[
"MNXR99514"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08485"
]
}
},
{
"id":"FE3HOXR2",
"name":"Fe(III)hydroxamate reductase",
"metabolites":{
"fe2_c":2.0,
"fe3hox_c":-2.0,
"fe3hox_un_c":2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3HOXR2"
]
},
"annotation":{
"bigg.reaction":[
"FE3HOXR2"
],
"metanetx.reaction":[
"MNXR99515"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08486"
]
}
},
{
"id":"FE3HOXR3",
"name":"Fe(III)hydroxamate reductase",
"metabolites":{
"fe2_c":2.0,
"fe3hox_c":-2.0,
"fe3hox_un_c":2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3HOXR3"
]
},
"annotation":{
"bigg.reaction":[
"FE3HOXR3"
],
"metanetx.reaction":[
"MNXR99516"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08487"
]
}
},
{
"id":"FE3HOXUtex",
"name":"Fe(III)hydroxamate unloaded secretion",
"metabolites":{
"fe3hox_un_c":-1.0,
"fe3hox_un_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3HOXUtex"
]
},
"annotation":{
"bigg.reaction":[
"FE3HOXUtex"
],
"metanetx.reaction":[
"MNXR99517"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08489"
]
}
},
{
"id":"FDH5pp",
"name":"Formate Dehydrogenase (menaquinone-8) (periplasm)",
"metabolites":{
"co2_p":1.0,
"for_p":-1.0,
"h_c":-2.0,
"h_p":1.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1570 and STM1569 and STM1568) or (STM4035 and STM4036 and STM4037)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"FDH5pp"
]
},
"annotation":{
"bigg.reaction":[
"FDH5pp"
],
"metanetx.reaction":[
"MNXR99480"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FE2t2pp",
"name":"Iron (II) transport in via proton symport (periplasm)",
"metabolites":{
"fe2_c":1.0,
"fe2_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2408",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE2t2pp"
]
},
"annotation":{
"bigg.reaction":[
"FE2t2pp"
],
"biocyc":[
"META:RXN0-2421"
],
"metanetx.reaction":[
"MNXR99501"
],
"rhea":[
"29579",
"29582",
"29581",
"29580"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08473"
]
}
},
{
"id":"FE2tex",
"name":"Iron (II) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"fe2_e":-1.0,
"fe2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FE2tex"
]
},
"annotation":{
"bigg.reaction":[
"FE2tex"
],
"biocyc":[
"META:TRANS-RXN-8"
],
"metanetx.reaction":[
"MNXR99505"
],
"rhea":[
"28488",
"28487",
"28489",
"28486"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08476",
"rxn08475",
"rxn13286",
"rxn10963"
]
}
},
{
"id":"FE2tpp",
"name":"Iron (+2) transport in via permease (no H+)",
"metabolites":{
"fe2_c":1.0,
"fe2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3190",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE2tpp"
]
},
"annotation":{
"bigg.reaction":[
"FE2tpp"
],
"biocyc":[
"META:TRANS-RXN-8"
],
"metanetx.reaction":[
"MNXR99505"
],
"rhea":[
"28488",
"28487",
"28489",
"28486"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08476",
"rxn08475",
"rxn13286",
"rxn10963"
]
}
},
{
"id":"FE3HOXUtpp",
"name":"Fe(III)hydroxamate unloaded secretion (extracellular)",
"metabolites":{
"fe3hox_un_e":1.0,
"fe3hox_un_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3HOXUtpp"
]
},
"annotation":{
"bigg.reaction":[
"FE3HOXUtpp"
],
"metanetx.reaction":[
"MNXR99518"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08490"
]
}
},
{
"id":"FE3HOXexs",
"name":"Fe(III) hydroxamate Fe-loading reaction (spontaneaous)",
"metabolites":{
"fe3_e":-1.0,
"fe3hox_e":1.0,
"fe3hox_un_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3HOXexs"
]
},
"annotation":{
"bigg.reaction":[
"FE3HOXexs"
],
"metanetx.reaction":[
"MNXR99520"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08484"
]
}
},
{
"id":"EX_glyald_e",
"name":"D-Glyceraldehyde exchange",
"metabolites":{
"glyald_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glyald_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glyald_e"
],
"metanetx.reaction":[
"MNXR100311"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08636",
"rxn08635",
"rxn10164"
]
}
},
{
"id":"FE3HOXtonex",
"name":"Fe(III)hydroxamine transport via ton system (extracellular)",
"metabolites":{
"fe3hox_e":-1.0,
"fe3hox_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0191 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"FE3HOXtonex"
]
},
"annotation":{
"bigg.reaction":[
"FE3HOXtonex"
],
"metanetx.reaction":[
"MNXR99521"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08488"
]
}
},
{
"id":"FE3Ri",
"name":"Fe(III) reduction",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"fe3_c":-2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FE3Ri"
]
},
"annotation":{
"bigg.reaction":[
"FE3Ri"
],
"metanetx.reaction":[
"MNXR99524"
],
"rhea":[
"30155",
"30157",
"30158",
"30156"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08491"
]
}
},
{
"id":"FE3DHBZR",
"name":"Release of Fe(III) from ferric 2,3-dihydroxybenzoylserine",
"metabolites":{
"23dhbzs_c":1.0,
"fe3_c":1.0,
"fe3dhbzs_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3DHBZR"
]
},
"annotation":{
"bigg.reaction":[
"FE3DHBZR"
],
"metanetx.reaction":[
"MNXR99510"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08480"
]
}
},
{
"id":"FE3DHBZSabcpp",
"name":"Ferric 2,3-dihydroxybenzoylserine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fe3dhbzs_c":1.0,
"fe3dhbzs_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0594 and STM0590 and STM0592 and STM0591",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3DHBZSabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FE3DHBZSabcpp"
],
"metanetx.reaction":[
"MNXR99511"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08481"
]
}
},
{
"id":"FE3tex",
"name":"Iron (III) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"fe3_e":-1.0,
"fe3_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FE3tex"
]
},
"annotation":{
"bigg.reaction":[
"FE3tex"
],
"metanetx.reaction":[
"MNXR99522"
],
"reactome.reaction":[
"R-RNO-442368",
"R-HSA-442368",
"R-BTA-442368",
"R-SSC-442368",
"R-MMU-442368",
"R-CFA-442368",
"R-GGA-442368",
"R-TGU-442368"
],
"rhea":[
"34973",
"34972",
"34974",
"34971"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05292",
"rxn08492"
]
}
},
{
"id":"G1PPpp",
"name":"Glucose-1-phosphatase",
"metabolites":{
"g1p_p":-1.0,
"glc__D_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1117",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"G1PPpp"
]
},
"annotation":{
"bigg.reaction":[
"G1PPpp"
],
"biocyc":[
"META:GLUCOSE-1-PHOSPHAT-RXN",
"META:RXN-17330"
],
"ec-code":[
"3.1.3.10"
],
"kegg.reaction":[
"R00304"
],
"metanetx.reaction":[
"MNXR99844"
],
"rhea":[
"19933",
"19936",
"19935",
"19934"
],
"sabiork":[
"797",
"9953"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00221"
]
}
},
{
"id":"EX_glyb_e",
"name":"Glycine betaine exchange",
"metabolites":{
"glyb_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glyb_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glyb_e"
],
"biocyc":[
"META:TRANS-RXN0-490"
],
"metanetx.reaction":[
"MNXR100317"
],
"reactome.reaction":[
"R-HSA-6797957"
],
"rhea":[
"28945",
"28944",
"28946",
"28943"
],
"sabiork":[
"11693"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08639",
"rxn12430"
]
}
},
{
"id":"FECRMR1",
"name":"Ferrichrome reductase",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"fecrm_c":-2.0,
"fecrm_un_c":2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FECRMR1"
]
},
"annotation":{
"bigg.reaction":[
"FECRMR1"
],
"metanetx.reaction":[
"MNXR99530"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08495"
]
}
},
{
"id":"FECRMR2",
"name":"Ferrichrome reductase",
"metabolites":{
"fe2_c":2.0,
"fecrm_c":-2.0,
"fecrm_un_c":2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FECRMR2"
]
},
"annotation":{
"bigg.reaction":[
"FECRMR2"
],
"metanetx.reaction":[
"MNXR99531"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08496"
]
}
},
{
"id":"FECRMR3",
"name":"Ferrichrome reductase",
"metabolites":{
"fe2_c":2.0,
"fecrm_c":-2.0,
"fecrm_un_c":2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FECRMR3"
]
},
"annotation":{
"bigg.reaction":[
"FECRMR3"
],
"metanetx.reaction":[
"MNXR99532"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08497"
]
}
},
{
"id":"G1PTT",
"name":"Glucose-1-phosphate thymidylyltransferase",
"metabolites":{
"dtdpglu_c":1.0,
"dttp_c":-1.0,
"g1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3923 or STM2095",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"G1PTT"
]
},
"annotation":{
"bigg.reaction":[
"G1PTT"
],
"biocyc":[
"META:DTDPGLUCOSEPP-RXN"
],
"ec-code":[
"2.7.7.24"
],
"kegg.reaction":[
"R02328"
],
"metanetx.reaction":[
"MNXR99846"
],
"rhea":[
"15226",
"15227",
"15225",
"15228"
],
"sabiork":[
"2281"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01675"
]
}
},
{
"id":"EX_glyc2p_e",
"name":"Glycerol 2-phosphate exchange",
"metabolites":{
"glyc2p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glyc2p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glyc2p_e"
],
"metanetx.reaction":[
"MNXR100319"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08640"
]
}
},
{
"id":"G1Ptex",
"name":"D-glucose 1-phosphate transport via diffusion",
"metabolites":{
"g1p_e":-1.0,
"g1p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"G1Ptex"
]
},
"annotation":{
"bigg.reaction":[
"G1Ptex"
],
"metanetx.reaction":[
"MNXR99849"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08545"
]
}
},
{
"id":"FECRMUtex",
"name":"Ferrichrome (minus Fe) secretion (to extracellular)",
"metabolites":{
"fecrm_un_e":1.0,
"fecrm_un_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FECRMUtex"
]
},
"annotation":{
"bigg.reaction":[
"FECRMUtex"
],
"metanetx.reaction":[
"MNXR99533"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08499"
]
}
},
{
"id":"FECRMUtpp",
"name":"Ferrichrome (minus Fe) secretion (to periplasm)",
"metabolites":{
"fecrm_un_c":-1.0,
"fecrm_un_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FECRMUtpp"
]
},
"annotation":{
"bigg.reaction":[
"FECRMUtpp"
],
"metanetx.reaction":[
"MNXR99534"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08500"
]
}
},
{
"id":"FECRMabcpp",
"name":"Ferrichrome transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fecrm_c":1.0,
"fecrm_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0194 and STM0192 and STM0193",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FECRMabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FECRMabcpp"
],
"biocyc":[
"META:TRANS-RXN-298"
],
"ec-code":[
"3.6.3.34"
],
"metanetx.reaction":[
"MNXR99535"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08493",
"rxn05188"
]
}
},
{
"id":"EX_glyc3p_e",
"name":"Glycerol 3-phosphate exchange",
"metabolites":{
"glyc3p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glyc3p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glyc3p_e"
],
"metanetx.reaction":[
"MNXR100308"
],
"rhea":[
"34969",
"34967",
"34968",
"34970"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08643",
"rxn09749",
"rxn11234"
]
}
},
{
"id":"FECRMexs",
"name":"Ferrichrome Fe(III)-loading reaction (spontaneous)",
"metabolites":{
"fe3_e":-1.0,
"fecrm_e":1.0,
"fecrm_un_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FECRMexs"
]
},
"annotation":{
"bigg.reaction":[
"FECRMexs"
],
"metanetx.reaction":[
"MNXR99536"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08494"
]
}
},
{
"id":"G1SAT",
"name":"Glutamate-1-semialdehyde aminotransferase",
"metabolites":{
"5aop_c":1.0,
"glu1sa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0202",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"G1SAT"
]
},
"annotation":{
"bigg.reaction":[
"G1SAT"
],
"biocyc":[
"META:GSAAMINOTRANS-RXN"
],
"ec-code":[
"5.4.3.8"
],
"kegg.reaction":[
"R02272"
],
"metanetx.reaction":[
"MNXR99850"
],
"rhea":[
"14265",
"14267",
"14268",
"14266"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01629"
]
}
},
{
"id":"G2PPpp",
"name":"Glycerol 2-phosphate phosphatase (periplasmic)",
"metabolites":{
"glyc2p_p":-1.0,
"glyc_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"G2PPpp"
]
},
"annotation":{
"bigg.reaction":[
"G2PPpp"
],
"biocyc":[
"META:GLYCEROL-2-PHOSPHATASE-RXN"
],
"ec-code":[
"3.1.3.19"
],
"kegg.reaction":[
"R01043"
],
"metanetx.reaction":[
"MNXR99852"
],
"rhea":[
"13106",
"13108",
"13107",
"13105"
],
"sabiork":[
"1325"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00766"
]
}
},
{
"id":"FECRMtonex",
"name":"Ferrichrome transport via ton system (extracellular)",
"metabolites":{
"fecrm_e":-1.0,
"fecrm_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0191 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"FECRMtonex"
]
},
"annotation":{
"bigg.reaction":[
"FECRMtonex"
],
"metanetx.reaction":[
"MNXR99537"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08498"
]
}
},
{
"id":"EX_glyc__R_e",
"name":"(R)-Glycerate exchange",
"metabolites":{
"glyc__R_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glyc_R_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glyc__R_e"
],
"biocyc":[
"META:TRANS-RXN0-523"
],
"metanetx.reaction":[
"MNXR100323"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08645"
]
}
},
{
"id":"FEENTERabcpp",
"name":"Fe-enterobactin transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"feenter_c":1.0,
"feenter_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0594 and STM0590 and STM0592 and STM0591",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEENTERabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FEENTERabcpp"
],
"ec-code":[
"3.6.3.34"
],
"metanetx.reaction":[
"MNXR99546"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FEENTERexs",
"name":"Enterobactin Fe(III) binding (spontaneous)",
"metabolites":{
"enter_e":-1.0,
"fe3_e":-1.0,
"feenter_e":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEENTERexs"
]
},
"annotation":{
"bigg.reaction":[
"FEENTERexs"
],
"metanetx.reaction":[
"MNXR99547"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEENTERtonex",
"name":"Fe-enterobactin transport via ton system (extracellular)",
"metabolites":{
"feenter_e":-1.0,
"feenter_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0585 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"FEENTERtonex"
]
},
"annotation":{
"bigg.reaction":[
"FEENTERtonex"
],
"metanetx.reaction":[
"MNXR99549"
],
"sbo":"SBO:0000185"
}
},
{
"id":"G3PAT120",
"name":"Glycerol-3-phosphate acyltransferase (C12:0)",
"metabolites":{
"1ddecg3p_c":1.0,
"ACP_c":1.0,
"ddcaACP_c":-1.0,
"glyc3p_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4235",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"G3PAT120"
]
},
"annotation":{
"bigg.reaction":[
"G3PAT120"
],
"ec-code":[
"2.3.1.15"
],
"metanetx.reaction":[
"MNXR99854"
],
"sbo":"SBO:0000176"
}
},
{
"id":"G3PAT140",
"name":"Glycerol-3-phosphate acyltransferase (C14:0)",
"metabolites":{
"1tdecg3p_c":1.0,
"ACP_c":1.0,
"glyc3p_c":-1.0,
"myrsACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4235",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"G3PAT140"
]
},
"annotation":{
"bigg.reaction":[
"G3PAT140"
],
"ec-code":[
"2.3.1.15"
],
"metanetx.reaction":[
"MNXR99855"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_glyc_e",
"name":"Glycerol exchange",
"metabolites":{
"glyc_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glyc_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glyc_e"
],
"biocyc":[
"META:TRANS-RXN-131"
],
"metanetx.reaction":[
"MNXR100343"
],
"reactome.reaction":[
"R-RNO-507871",
"R-SCE-507871",
"R-MMU-432049",
"R-GGA-507869",
"R-SCE-432049",
"R-MMU-507869",
"R-CEL-507869",
"R-SPO-432049",
"R-TGU-432049",
"R-HSA-507871",
"R-PFA-432074",
"R-GGA-432049",
"R-PFA-432049",
"R-BTA-432049",
"R-MMU-507871",
"R-CEL-507871",
"R-XTR-507871",
"R-HSA-507869",
"R-SCE-507869",
"R-DRE-507869",
"R-PFA-507869",
"R-TGU-507869",
"R-RNO-507869",
"R-MMU-432074",
"R-SPO-432074",
"R-BTA-432074",
"R-CFA-432074",
"R-CEL-432074",
"R-PFA-507871",
"R-SSC-432074",
"R-CFA-507871",
"R-SPO-507871",
"R-BTA-507871",
"R-XTR-432049",
"R-HSA-432049",
"R-DRE-432074",
"R-CFA-432049",
"R-SPO-507869",
"R-GGA-432074",
"R-HSA-432074",
"R-RNO-432074",
"R-SCE-432074",
"R-TGU-507871",
"R-GGA-507871",
"R-DRE-432049",
"R-BTA-507869",
"R-SSC-507871",
"R-XTR-432074",
"R-XTR-507869",
"R-CFA-507869",
"R-RNO-432049",
"R-SSC-507869",
"R-SSC-432049",
"R-TGU-432074",
"R-CEL-432049",
"R-DRE-507871"
],
"rhea":[
"29676",
"29678",
"29677",
"29675"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05581",
"rxn08654",
"rxn08658"
]
}
},
{
"id":"EX_glyclt_e",
"name":"Glycolate exchange",
"metabolites":{
"glyclt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_glyclt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_glyclt_e"
],
"biocyc":[
"META:RXN0-5111"
],
"metanetx.reaction":[
"MNXR100333"
],
"rhea":[
"29448",
"29450",
"29449",
"29447"
],
"sabiork":[
"12468"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08653",
"rxn12426"
]
}
},
{
"id":"G3PAT141",
"name":"Glycerol-3-phosphate acyltransferase (C14:1)",
"metabolites":{
"1tdec7eg3p_c":1.0,
"ACP_c":1.0,
"glyc3p_c":-1.0,
"tdeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4235",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"G3PAT141"
]
},
"annotation":{
"bigg.reaction":[
"G3PAT141"
],
"ec-code":[
"2.3.1.15"
],
"metanetx.reaction":[
"MNXR99856"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEENTERtpp",
"name":"Enterochelin transport (secretion)",
"metabolites":{
"enter_c":-1.0,
"enter_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0593",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FEENTERtpp"
]
},
"annotation":{
"bigg.reaction":[
"FEENTERtpp"
],
"metanetx.reaction":[
"MNXR99550"
],
"rhea":[
"29435",
"29438",
"29437",
"29436"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08508"
]
}
},
{
"id":"EX_gmp_e",
"name":"GMP exchange",
"metabolites":{
"gmp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gmp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gmp_e"
],
"biocyc":[
"META:TRANS-RXN0-565"
],
"metanetx.reaction":[
"MNXR100386"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08664"
]
}
},
{
"id":"G3PAT160",
"name":"Glycerol-3-phosphate acyltransferase (C16:0)",
"metabolites":{
"1hdecg3p_c":1.0,
"ACP_c":1.0,
"glyc3p_c":-1.0,
"palmACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4235",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"G3PAT160"
]
},
"annotation":{
"bigg.reaction":[
"G3PAT160"
],
"ec-code":[
"2.3.1.15"
],
"metanetx.reaction":[
"MNXR99857"
],
"sbo":"SBO:0000176"
}
},
{
"id":"G3PAT161",
"name":"Glycerol-3-phosphate acyltransferase (C16:1)",
"metabolites":{
"1hdec9eg3p_c":1.0,
"ACP_c":1.0,
"glyc3p_c":-1.0,
"hdeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4235",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"G3PAT161"
]
},
"annotation":{
"bigg.reaction":[
"G3PAT161"
],
"ec-code":[
"2.3.1.15"
],
"metanetx.reaction":[
"MNXR99859"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEOXAMUtex",
"name":"Ferroxamine (minus Fe3) secretion (to extracellular)",
"metabolites":{
"feoxam_un_e":1.0,
"feoxam_un_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEOXAMUtex"
]
},
"annotation":{
"bigg.reaction":[
"FEOXAMUtex"
],
"metanetx.reaction":[
"MNXR99554"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08515"
]
}
},
{
"id":"EX_gsn_e",
"name":"Guanosine exchange",
"metabolites":{
"gsn_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gsn_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gsn_e"
],
"metanetx.reaction":[
"MNXR100433"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08672",
"rxn10897"
]
}
},
{
"id":"FEOXAMUtpp",
"name":"Ferroxamine (minus Fe3) secretion (to periplasm)",
"metabolites":{
"feoxam_un_c":-1.0,
"feoxam_un_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEOXAMUtpp"
]
},
"annotation":{
"bigg.reaction":[
"FEOXAMUtpp"
],
"metanetx.reaction":[
"MNXR99555"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08516"
]
}
},
{
"id":"FEOXAMabcpp",
"name":"Ferroxamine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"feoxam_c":1.0,
"feoxam_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0194 and STM0192 and STM0193",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEOXAMabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FEOXAMabcpp"
],
"metanetx.reaction":[
"MNXR143100"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08509",
"rxn05558"
]
}
},
{
"id":"FEOXAMexs",
"name":"Ferroxamine Fe3-loading reaction (spontaneous)",
"metabolites":{
"fe3_e":-1.0,
"feoxam_e":1.0,
"feoxam_un_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEOXAMexs"
]
},
"annotation":{
"bigg.reaction":[
"FEOXAMexs"
],
"metanetx.reaction":[
"MNXR143101"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08510"
]
}
},
{
"id":"G3PAT180",
"name":"Glycerol-3-phosphate acyltransferase (C18:0)",
"metabolites":{
"1odecg3p_c":1.0,
"ACP_c":1.0,
"glyc3p_c":-1.0,
"ocdcaACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4235",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"G3PAT180"
]
},
"annotation":{
"bigg.reaction":[
"G3PAT180"
],
"ec-code":[
"2.3.1.15"
],
"metanetx.reaction":[
"MNXR99860"
],
"sbo":"SBO:0000176"
}
},
{
"id":"G3PAT181",
"name":"Glycerol-3-phosphate acyltransferase (C18:1)",
"metabolites":{
"1odec11eg3p_c":1.0,
"ACP_c":1.0,
"glyc3p_c":-1.0,
"octeACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4235",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"G3PAT181"
]
},
"annotation":{
"bigg.reaction":[
"G3PAT181"
],
"ec-code":[
"2.3.1.15"
],
"metanetx.reaction":[
"MNXR99862"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEOXAMtonex",
"name":"Ferroxamine transport via ton system (extracellular)",
"metabolites":{
"feoxam_e":-1.0,
"feoxam_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0191 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"FEOXAMtonex"
]
},
"annotation":{
"bigg.reaction":[
"FEOXAMtonex"
],
"metanetx.reaction":[
"MNXR143102"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08514"
]
}
},
{
"id":"EX_gthox_e",
"name":"Oxidized glutathione exchange",
"metabolites":{
"gthox_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gthox_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gthox_e"
],
"metanetx.reaction":[
"MNXR100443"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09677",
"rxn08674"
]
}
},
{
"id":"FEROpp",
"name":"Ferroxidase",
"metabolites":{
"fe2_p":-4.0,
"fe3_p":4.0,
"h2o_p":2.0,
"h_p":-4.0,
"o2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0168",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROpp"
]
},
"annotation":{
"bigg.reaction":[
"FEROpp"
],
"biocyc":[
"META:RXN0-1483"
],
"ec-code":[
"1.16.3.1"
],
"kegg.reaction":[
"R00078"
],
"metanetx.reaction":[
"MNXR99561"
],
"rhea":[
"11437",
"11149",
"11438",
"11151",
"11439",
"11436",
"11150",
"11148"
],
"sabiork":[
"665"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00056"
]
}
},
{
"id":"G3PCabcpp",
"name":"Sn-glycerol-3-phosphocholine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"g3pc_c":1.0,
"g3pc_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3556 and STM3557 and STM3554 and STM3555",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"G3PCabcpp"
]
},
"annotation":{
"bigg.reaction":[
"G3PCabcpp"
],
"metanetx.reaction":[
"MNXR99873"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08553"
]
}
},
{
"id":"EX_gthrd_e",
"name":"Reduced glutathione exchange",
"metabolites":{
"gthrd_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gthrd_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gthrd_e"
],
"metanetx.reaction":[
"MNXR100449"
],
"reactome.reaction":[
"R-HSA-1247915",
"R-HSA-1500817"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08677",
"rxn10829"
]
}
},
{
"id":"G3PCtex",
"name":"Glycero-3-phosphocholine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"g3pc_e":-1.0,
"g3pc_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"G3PCtex"
]
},
"annotation":{
"bigg.reaction":[
"G3PCtex"
],
"metanetx.reaction":[
"MNXR99874"
],
"rhea":[
"32912",
"32911",
"32913",
"32914"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08554",
"rxn13291"
]
}
},
{
"id":"FHL",
"name":"Formate-hydrogen lyase",
"metabolites":{
"co2_c":1.0,
"for_c":-1.0,
"h2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM4285 and (STM2847 and STM2848 and STM2849 and STM2850 and STM2851 and STM2852)",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"FHL"
]
},
"annotation":{
"bigg.reaction":[
"FHL"
],
"biocyc":[
"META:FHLMULTI-RXN"
],
"metanetx.reaction":[
"MNXR99594"
],
"rhea":[
"27611",
"27610",
"27613",
"27612"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08518"
]
}
},
{
"id":"FLDR",
"name":"Flavodoxin reductase (NADPH)",
"metabolites":{
"fldox_c":-1.0,
"fldrd_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0694 and STM4084) or (STM3045 and STM4084)",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"FLDR"
]
},
"annotation":{
"bigg.reaction":[
"FLDR"
],
"biocyc":[
"META:FLAVONADPREDUCT-RXN"
],
"ec-code":[
"1.19.1.a",
"1.19.1.1"
],
"kegg.reaction":[
"R11485"
],
"metanetx.reaction":[
"MNXR99598"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_gtp_e",
"name":"GTP exchange",
"metabolites":{
"gtp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gtp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gtp_e"
],
"metanetx.reaction":[
"MNXR100462"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08680",
"rxn12663"
]
}
},
{
"id":"FLVR",
"name":"Flavin reductase",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"rbflvrd_c":1.0,
"ribflv_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2947 and STM2948) or STM3979",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FLVR"
]
},
"annotation":{
"bigg.reaction":[
"FLVR"
],
"biocyc":[
"META:NADPH-DEHYDROGENASE-FLAVIN-RXN"
],
"ec-code":[
"1.5.1.41",
"1.5.1.30"
],
"kegg.reaction":[
"R05707"
],
"metanetx.reaction":[
"MNXR99601"
],
"rhea":[
"19378",
"19379",
"19377",
"19380"
],
"sabiork":[
"1843"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03976"
]
}
},
{
"id":"G3PD2",
"name":"Glycerol-3-phosphate dehydrogenase (NADP)",
"metabolites":{
"dhap_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3700",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"G3PD2"
]
},
"annotation":{
"bigg.reaction":[
"G3PD2"
],
"ec-code":[
"1.1.1.94"
],
"kegg.reaction":[
"R00844"
],
"metanetx.reaction":[
"MNXR99877"
],
"rhea":[
"11096",
"11099",
"11098",
"11097"
],
"sabiork":[
"1184"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00612"
]
}
},
{
"id":"G3PD5",
"name":"Glycerol-3-phosphate dehydrogenase (ubiquinone-8)",
"metabolites":{
"dhap_c":1.0,
"glyc3p_c":-1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2284 and STM2285 and STM2286) or STM3526",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"G3PD5"
]
},
"annotation":{
"bigg.reaction":[
"G3PD5"
],
"metanetx.reaction":[
"MNXR99880"
],
"rhea":[
"28753",
"28752",
"28754",
"28751"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08556"
]
}
},
{
"id":"G3PD6",
"name":"Glycerol-3-phosphate dehydrogenase (menaquinone-8)",
"metabolites":{
"dhap_c":1.0,
"glyc3p_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2284 and STM2285 and STM2286",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"G3PD6"
]
},
"annotation":{
"bigg.reaction":[
"G3PD6"
],
"metanetx.reaction":[
"MNXR99881"
],
"rhea":[
"29223",
"29226",
"29225",
"29224"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08557"
]
}
},
{
"id":"G3PD7",
"name":"Glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8)",
"metabolites":{
"2dmmq8_c":-1.0,
"2dmmql8_c":1.0,
"dhap_c":1.0,
"glyc3p_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2284 and STM2285 and STM2286",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"G3PD7"
]
},
"annotation":{
"bigg.reaction":[
"G3PD7"
],
"ec-code":[
"1.1.99.5"
],
"metanetx.reaction":[
"MNXR99882"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08558"
]
}
},
{
"id":"G3PEabcpp",
"name":"Sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"g3pe_c":1.0,
"g3pe_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3556 and STM3557 and STM3554 and STM3555",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"G3PEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"G3PEabcpp"
],
"metanetx.reaction":[
"MNXR99883"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08559"
]
}
},
{
"id":"G3PEtex",
"name":"Glycero-3-phosphoethanolamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"g3pe_e":-1.0,
"g3pe_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"G3PEtex"
]
},
"annotation":{
"bigg.reaction":[
"G3PEtex"
],
"metanetx.reaction":[
"MNXR99884"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08560"
]
}
},
{
"id":"FLVRx",
"name":"Flavin reductase (NAD)",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"rbflvrd_c":1.0,
"ribflv_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FLVRx"
]
},
"annotation":{
"bigg.reaction":[
"FLVRx"
],
"ec-code":[
"1.5.1.41",
"1.5.1.36"
],
"kegg.reaction":[
"R09750"
],
"metanetx.reaction":[
"MNXR99602"
],
"rhea":[
"31458",
"31457",
"31455",
"31456"
],
"sabiork":[
"7291"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08521"
]
}
},
{
"id":"FMETTRS",
"name":"Methionyl-tRNA formyltransferase",
"metabolites":{
"10fthf_c":-1.0,
"fmettrna_c":1.0,
"h_c":1.0,
"mettrna_c":-1.0,
"thf_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3407",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"FMETTRS"
]
},
"annotation":{
"bigg.reaction":[
"FMETTRS"
],
"ec-code":[
"2.1.2.9"
],
"kegg.reaction":[
"R03940"
],
"metanetx.reaction":[
"MNXR99604"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FMNAT",
"name":"FMN adenylyltransferase",
"metabolites":{
"atp_c":-1.0,
"fad_c":1.0,
"fmn_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0045",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FMNAT"
]
},
"annotation":{
"bigg.reaction":[
"FMNAT"
],
"biocyc":[
"META:FADSYN-RXN"
],
"ec-code":[
"2.7.7.2"
],
"kegg.reaction":[
"R00161"
],
"metanetx.reaction":[
"MNXR95501"
],
"reactome.reaction":[
"R-XTR-196929",
"R-ATH-196929",
"R-GGA-196929",
"R-SSC-196929",
"R-DRE-196929",
"R-HSA-196929",
"R-RNO-196929",
"R-SCE-196929",
"R-CEL-196929",
"R-DDI-196929",
"R-BTA-196929",
"R-MMU-196929",
"R-DME-196929",
"R-SPO-196929",
"R-TGU-196929",
"R-PFA-196929",
"R-CFA-196929"
],
"rhea":[
"17239",
"17240",
"17238",
"17237"
],
"sabiork":[
"390"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00122"
]
}
},
{
"id":"FMNRx",
"name":"FMN reductase",
"metabolites":{
"fmn_c":-1.0,
"fmnh2_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FMNRx"
]
},
"annotation":{
"bigg.reaction":[
"FMNRx"
],
"biocyc":[
"META:RXN-9510"
],
"ec-code":[
"1.5.1.41",
"1.5.1.42",
"1.5.1.36",
"1.5.1.39",
"1.5.1.-"
],
"kegg.reaction":[
"R05705"
],
"metanetx.reaction":[
"MNXR99607"
],
"rhea":[
"21620",
"21622",
"21623",
"21621"
],
"sabiork":[
"5301"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03974"
]
}
},
{
"id":"G3PGabcpp",
"name":"Sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"g3pg_c":1.0,
"g3pg_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3556 and STM3557 and STM3554 and STM3555",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"G3PGabcpp"
]
},
"annotation":{
"bigg.reaction":[
"G3PGabcpp"
],
"metanetx.reaction":[
"MNXR99885"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08561"
]
}
},
{
"id":"FMNRx2",
"name":"FMN reductase",
"metabolites":{
"fmn_c":-1.0,
"fmnh2_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2947 and STM2948) or STM3979",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FMNRx2"
]
},
"annotation":{
"bigg.reaction":[
"FMNRx2"
],
"biocyc":[
"META:RXN-12444"
],
"ec-code":[
"1.5.1.38",
"1.5.1.39",
"1.5.1.-"
],
"kegg.reaction":[
"R05706"
],
"metanetx.reaction":[
"MNXR99597"
],
"rhea":[
"21625",
"50759",
"50756",
"50758",
"21627",
"21626",
"21624",
"50757"
],
"sabiork":[
"5302"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13939",
"rxn03975",
"rxn13930"
]
}
},
{
"id":"EX_gua_e",
"name":"Guanine exchange",
"metabolites":{
"gua_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_gua_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_gua_e"
],
"biocyc":[
"META:TRANS-RXN0-578"
],
"metanetx.reaction":[
"MNXR100465"
],
"sabiork":[
"12299"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10142",
"rxn08683",
"rxn08682",
"rxn09746"
]
}
},
{
"id":"FORt2pp",
"name":"Formate transport via proton symport (uptake only, periplasm)",
"metabolites":{
"for_c":1.0,
"for_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0974",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FORt2pp"
]
},
"annotation":{
"bigg.reaction":[
"FORt2pp"
],
"metanetx.reaction":[
"MNXR99621"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08524",
"rxn05559"
]
}
},
{
"id":"FORtex",
"name":"Formate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"for_e":-1.0,
"for_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FORtex"
]
},
"annotation":{
"bigg.reaction":[
"FORtex"
],
"biocyc":[
"META:TRANS-RXN-1"
],
"metanetx.reaction":[
"MNXR99620"
],
"reactome.reaction":[
"R-HSA-6803255"
],
"rhea":[
"29681",
"29680",
"29682",
"29679"
],
"sabiork":[
"12483"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09754",
"rxn08525",
"rxn09682",
"rxn08526"
]
}
},
{
"id":"G3PGtex",
"name":"Glycerophoglycerol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"g3pg_e":-1.0,
"g3pg_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"G3PGtex"
]
},
"annotation":{
"bigg.reaction":[
"G3PGtex"
],
"metanetx.reaction":[
"MNXR99886"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08562"
]
}
},
{
"id":"G3PIabcpp",
"name":"Sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"g3pi_c":1.0,
"g3pi_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3556 and STM3557 and STM3554 and STM3555",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"G3PIabcpp"
]
},
"annotation":{
"bigg.reaction":[
"G3PIabcpp"
],
"metanetx.reaction":[
"MNXR99887"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08563"
]
}
},
{
"id":"G3PItex",
"name":"Glycero-3-phospho-1-inositol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"g3pi_e":-1.0,
"g3pi_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"G3PItex"
]
},
"annotation":{
"bigg.reaction":[
"G3PItex"
],
"metanetx.reaction":[
"MNXR99888"
],
"rhea":[
"32918",
"32917",
"32916",
"32915"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13292",
"rxn08564"
]
}
},
{
"id":"FORtppi",
"name":"Formate transport via diffusion (cytoplasm to periplasm)",
"metabolites":{
"for_c":-1.0,
"for_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0974",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FORtppi"
]
},
"annotation":{
"bigg.reaction":[
"FORtppi"
],
"biocyc":[
"META:TRANS-RXN-1"
],
"metanetx.reaction":[
"MNXR99620"
],
"reactome.reaction":[
"R-HSA-6803255"
],
"rhea":[
"29681",
"29680",
"29682",
"29679"
],
"sabiork":[
"12483"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09754",
"rxn08525",
"rxn09682",
"rxn08526"
]
}
},
{
"id":"EX_h2_e",
"name":"H2 exchange",
"metabolites":{
"h2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_h2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_h2_e"
],
"metanetx.reaction":[
"MNXR100495"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10542",
"rxn08691",
"rxn08692"
]
}
},
{
"id":"FRD2",
"name":"Fumarate reductase",
"metabolites":{
"fum_c":-1.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"succ_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4340 and STM4341 and STM4342 and STM4343",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"FRD2"
]
},
"annotation":{
"bigg.reaction":[
"FRD2"
],
"metanetx.reaction":[
"MNXR99637"
],
"rhea":[
"29216",
"29215",
"29218",
"29217"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08527"
]
}
},
{
"id":"FRD3",
"name":"Fumarate reductase",
"metabolites":{
"2dmmq8_c":1.0,
"2dmmql8_c":-1.0,
"fum_c":-1.0,
"succ_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4340 and STM4341 and STM4342 and STM4343",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"FRD3"
]
},
"annotation":{
"bigg.reaction":[
"FRD3"
],
"ec-code":[
"1.3.99.1"
],
"metanetx.reaction":[
"MNXR99639"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08528"
]
}
},
{
"id":"G3PSabcpp",
"name":"Sn-glycerol-3-phosphoserine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"g3ps_c":1.0,
"g3ps_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3556 and STM3557 and STM3554 and STM3555",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"G3PSabcpp"
]
},
"annotation":{
"bigg.reaction":[
"G3PSabcpp"
],
"metanetx.reaction":[
"MNXR99892"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08565"
]
}
},
{
"id":"G3PStex",
"name":"Glycerophosphserine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"g3ps_e":-1.0,
"g3ps_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"G3PStex"
]
},
"annotation":{
"bigg.reaction":[
"G3PStex"
],
"metanetx.reaction":[
"MNXR99893"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08566"
]
}
},
{
"id":"G3PT",
"name":"Glycerol-3-phosphatase",
"metabolites":{
"glyc3p_c":-1.0,
"glyc_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0840 or STM0842",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"G3PT"
]
},
"annotation":{
"bigg.reaction":[
"G3PT"
],
"biocyc":[
"META:RXN-14965"
],
"ec-code":[
"3.1.3.2",
"3.1.3.21"
],
"kegg.reaction":[
"R00841"
],
"metanetx.reaction":[
"MNXR99894"
],
"sabiork":[
"1182"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00610"
]
}
},
{
"id":"FRUK",
"name":"Fructose-1-phosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"f1p_c":-1.0,
"fdp_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2205",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"FRUK"
]
},
"annotation":{
"bigg.reaction":[
"FRUK"
],
"ec-code":[
"2.7.1.56"
],
"metanetx.reaction":[
"MNXR99652"
],
"rhea":[
"14216",
"14213",
"14214",
"14215"
],
"sabiork":[
"7171"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01492"
]
}
},
{
"id":"EX_h2o2_e",
"name":"Hydrogen peroxide exchange",
"metabolites":{
"h2o2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_h2o2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_h2o2_e"
],
"biocyc":[
"META:TRANS-RXN-284",
"META:TRANS-RXN0-572"
],
"metanetx.reaction":[
"MNXR98640"
],
"reactome.reaction":[
"R-RNO-3779389",
"R-HSA-3779381"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13308",
"rxn08685"
]
}
},
{
"id":"FRULYStex",
"name":"Fructoselysine transporter via diffusion (extracellular)",
"metabolites":{
"frulys_e":-1.0,
"frulys_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FRULYStex"
]
},
"annotation":{
"bigg.reaction":[
"FRULYStex"
],
"biocyc":[
"META:TRANS-RXN0-417"
],
"metanetx.reaction":[
"MNXR99657"
],
"rhea":[
"28457",
"28455",
"28456",
"28454"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08534"
]
}
},
{
"id":"G5SADs",
"name":"L-glutamate 5-semialdehyde dehydratase (spontaneous)",
"metabolites":{
"1pyr5c_c":1.0,
"glu5sa_c":-1.0,
"h2o_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"G5SADs"
]
},
"annotation":{
"bigg.reaction":[
"G5SADs"
],
"biocyc":[
"META:SPONTPRO-RXN"
],
"kegg.reaction":[
"R03314"
],
"metanetx.reaction":[
"MNXR99897"
],
"reactome.reaction":[
"R-HSA-70655",
"R-HSA-70667"
],
"rhea":[
"28237",
"28234",
"28235",
"28236"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11220",
"rxn02374"
]
}
},
{
"id":"G5SD",
"name":"Glutamate-5-semialdehyde dehydrogenase",
"metabolites":{
"glu5p_c":-1.0,
"glu5sa_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0322",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"G5SD"
]
},
"annotation":{
"bigg.reaction":[
"G5SD"
],
"biocyc":[
"META:GLUTSEMIALDEHYDROG-RXN"
],
"ec-code":[
"1.2.1.41"
],
"kegg.reaction":[
"R03313"
],
"metanetx.reaction":[
"MNXR99896"
],
"rhea":[
"19541",
"19543",
"19544",
"19542"
],
"sabiork":[
"3127"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02373"
]
}
},
{
"id":"G6PDA",
"name":"Glucosamine-6-phosphate deaminase",
"metabolites":{
"f6p_c":1.0,
"gam6p_c":-1.0,
"h2o_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0684",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"G6PDA"
]
},
"annotation":{
"bigg.reaction":[
"G6PDA"
],
"ec-code":[
"3.5.99.6"
],
"kegg.reaction":[
"R00765"
],
"metanetx.reaction":[
"MNXR99905"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00552"
]
}
},
{
"id":"FRUURtex",
"name":"D-fructuronate transport via diffusion (extracellular)",
"metabolites":{
"fruur_e":-1.0,
"fruur_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FRUURtex"
]
},
"annotation":{
"bigg.reaction":[
"FRUURtex"
],
"metanetx.reaction":[
"MNXR99659"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08539"
]
}
},
{
"id":"FRUpts2pp",
"name":"Fructose transport via PEP:Pyr PTS (f6p generating) (periplasm)",
"metabolites":{
"f6p_c":1.0,
"fru_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1830 and STM1831 and STM1832 and STM2431 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FRUpts2pp"
]
},
"annotation":{
"bigg.reaction":[
"FRUpts2pp"
],
"metanetx.reaction":[
"MNXR99662"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FRUptspp",
"name":"D-fructose transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"f1p_c":1.0,
"fru_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2204 and STM2206 and STM2431 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FRUptspp"
]
},
"annotation":{
"bigg.reaction":[
"FRUptspp"
],
"metanetx.reaction":[
"MNXR99661"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05560",
"rxn08536"
]
}
},
{
"id":"FRUtex",
"name":"D-fructose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"fru_e":-1.0,
"fru_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FRUtex"
]
},
"annotation":{
"bigg.reaction":[
"FRUtex"
],
"metanetx.reaction":[
"MNXR99663"
],
"reactome.reaction":[
"R-OSA-189222",
"R-XTR-189222",
"R-SCE-189222",
"R-ATH-189222",
"R-RNO-189222",
"R-DME-189222",
"R-TGU-189222",
"R-SSC-189222",
"R-CFA-189222",
"R-DRE-189222",
"R-HSA-189222",
"R-GGA-189222",
"R-BTA-189222",
"R-MMU-189222",
"R-DDI-189222"
],
"sabiork":[
"13415"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12996",
"rxn08537"
]
}
},
{
"id":"G6PDH2r",
"name":"Glucose 6-phosphate dehydrogenase",
"metabolites":{
"6pgl_c":1.0,
"g6p_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1886",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"G6PDH2r"
]
},
"annotation":{
"bigg.reaction":[
"G6PDH2r"
],
"biocyc":[
"META:GLU6PDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.363",
"1.1.1.49"
],
"kegg.reaction":[
"R00835"
],
"metanetx.reaction":[
"MNXR99907"
],
"rhea":[
"15842",
"15843",
"15841",
"15844"
],
"sabiork":[
"1176",
"6509"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00604"
]
}
},
{
"id":"G6PP",
"name":"Glucose-6-phosphate phosphatase",
"metabolites":{
"g6p_c":-1.0,
"glc__D_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0840 or STM0842",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"G6PP"
]
},
"annotation":{
"bigg.reaction":[
"G6PP"
],
"biocyc":[
"META:RXN66-526"
],
"ec-code":[
"3.1.3.9",
"3.1.3.58"
],
"kegg.reaction":[
"R00303"
],
"metanetx.reaction":[
"MNXR99912"
],
"rhea":[
"16691",
"16689",
"16692",
"16690"
],
"sabiork":[
"7713",
"796"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00220"
]
}
},
{
"id":"G6Pt6_2pp",
"name":"Glucose-6-phosphate transport via phosphate antiport (periplasm)",
"metabolites":{
"g6p_c":1.0,
"g6p_p":-1.0,
"pi_c":-2.0,
"pi_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3787",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"G6Pt6_2pp"
]
},
"annotation":{
"bigg.reaction":[
"G6Pt6_2pp"
],
"metanetx.reaction":[
"MNXR99913"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08569",
"rxn05563"
]
}
},
{
"id":"FTHFD",
"name":"Formyltetrahydrofolate deformylase",
"metabolites":{
"10fthf_c":-1.0,
"for_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"thf_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1756",
"subsystem":"Folate Metabolism",
"notes":{
"original_bigg_ids":[
"FTHFD"
]
},
"annotation":{
"bigg.reaction":[
"FTHFD"
],
"ec-code":[
"3.5.1.10"
],
"kegg.reaction":[
"R00944"
],
"metanetx.reaction":[
"MNXR99669"
],
"rhea":[
"19833",
"19835",
"19834",
"19836"
],
"sabiork":[
"1259"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FUCtex",
"name":"L-fucose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"fuc__L_e":-1.0,
"fuc__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FUCtex"
]
},
"annotation":{
"bigg.reaction":[
"FUCtex"
],
"metanetx.reaction":[
"MNXR99704"
],
"sbo":"SBO:0000185"
}
},
{
"id":"G6Ptex",
"name":"Glucose 6-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"g6p_e":-1.0,
"g6p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"G6Ptex"
]
},
"annotation":{
"bigg.reaction":[
"G6Ptex"
],
"metanetx.reaction":[
"MNXR99915"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08570",
"rxn09644",
"rxn13641"
]
}
},
{
"id":"EX_h2o_e",
"name":"H2O exchange",
"metabolites":{
"h2o_e":-1.0
},
"lower_bound":-100.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_h2o_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_h2o_e"
],
"biocyc":[
"META:TRANS-RXN-145",
"META:TRANS-RXN0-547"
],
"metanetx.reaction":[
"MNXR98641"
],
"reactome.reaction":[
"R-ATH-507868",
"R-CFA-432054",
"R-CFA-432010",
"R-RNO-507868",
"R-OSA-432065",
"R-GGA-432010",
"R-SPO-445714",
"R-PFA-445714",
"R-CFA-432065",
"R-GGA-432067",
"R-TGU-432054",
"R-TGU-445714",
"R-OSA-507868",
"R-DRE-507868",
"R-SPO-507868",
"R-BTA-432054",
"R-GGA-507870",
"R-OSA-432010",
"R-DME-432065",
"R-DRE-432067",
"R-PFA-507868",
"R-SSC-432054",
"R-HSA-432065",
"R-OSA-507870",
"R-HSA-432054",
"R-SSC-432065",
"R-CEL-507868",
"R-XTR-507868",
"R-ATH-507870",
"R-SCE-432065",
"R-BTA-507870",
"R-DME-432010",
"R-CFA-445714",
"R-DRE-445714",
"R-BTA-507868",
"R-GGA-507868",
"R-RNO-432054",
"R-RNO-432010",
"R-SSC-432067",
"R-CEL-445714",
"R-DDI-432065",
"R-ATH-432010",
"R-SCE-432054",
"R-MMU-432065",
"R-MMU-445714",
"R-GGA-432065",
"R-HSA-432067",
"R-SSC-507870",
"R-SCE-432067",
"R-RNO-507870",
"R-DME-432054",
"R-ATH-432067",
"R-BTA-445714",
"R-DRE-507870",
"R-DME-507868",
"R-DME-507870",
"R-DRE-432010",
"R-MMU-432010",
"R-HSA-445714",
"R-OSA-432054",
"R-RNO-432067",
"R-TGU-432010",
"R-TGU-507868",
"R-DDI-432054",
"R-PFA-507870",
"R-HSA-507870",
"R-XTR-432067",
"R-HSA-432010",
"R-SSC-507868",
"R-SCE-507870",
"R-CEL-507870",
"R-DDI-507868",
"R-DRE-432054",
"R-XTR-507870",
"R-DDI-432010",
"R-BTA-432065",
"R-CFA-432067",
"R-OSA-432067",
"R-ATH-432065",
"R-GGA-445714",
"R-SCE-507868",
"R-TGU-432065",
"R-MMU-432067",
"R-TGU-507870",
"R-CFA-507870",
"R-RNO-432065",
"R-MMU-432054",
"R-MMU-507868",
"R-SPO-507870",
"R-SCE-432010",
"R-MMU-507870",
"R-SSC-445714",
"R-HSA-507868",
"R-DME-432067",
"R-SSC-432010",
"R-TGU-432067",
"R-GGA-432054",
"R-BTA-432010",
"R-SCE-445714",
"R-DDI-507870",
"R-ATH-432054",
"R-DDI-432067",
"R-XTR-445714",
"R-BTA-432067",
"R-CFA-507868",
"R-RNO-445714"
],
"rhea":[
"29668",
"29669",
"29667",
"29670"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08687",
"rxn08686",
"rxn09745",
"rxn09838",
"rxn09874",
"rxn09812",
"rxn09643",
"rxn05319"
]
}
},
{
"id":"GAL1PPpp",
"name":"D-galactose 1-phosphatase",
"metabolites":{
"gal1p_p":-1.0,
"gal_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1117",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GAL1PPpp"
]
},
"annotation":{
"bigg.reaction":[
"GAL1PPpp"
],
"biocyc":[
"META:RXN-14938"
],
"ec-code":[
"3.1.3.94"
],
"kegg.reaction":[
"R10622"
],
"metanetx.reaction":[
"MNXR99922"
],
"rhea":[
"29316",
"29317",
"29318",
"29315"
],
"sabiork":[
"9957",
"13296"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08571"
]
}
},
{
"id":"GAL1Ptex",
"name":"D-galactose 1-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gal1p_e":-1.0,
"gal1p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GAL1Ptex"
]
},
"annotation":{
"bigg.reaction":[
"GAL1Ptex"
],
"metanetx.reaction":[
"MNXR99923"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08572"
]
}
},
{
"id":"FUCtpp",
"name":"L-fucose transport via proton symport (periplasm)",
"metabolites":{
"fuc__L_c":1.0,
"fuc__L_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2975",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FUCtpp"
]
},
"annotation":{
"bigg.reaction":[
"FUCtpp"
],
"biocyc":[
"META:TRANS-RXN-20"
],
"metanetx.reaction":[
"MNXR99703"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FUM",
"name":"Fumarase",
"metabolites":{
"fum_c":-1.0,
"h2o_c":-1.0,
"mal__L_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1468 or STM4300 or STM1469 or (STM0761 and STM0762)",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"FUM"
]
},
"annotation":{
"bigg.reaction":[
"FUM"
],
"biocyc":[
"META:FUMHYDR-RXN"
],
"ec-code":[
"4.2.1.2"
],
"kegg.reaction":[
"R01082"
],
"metanetx.reaction":[
"MNXR99705"
],
"reactome.reaction":[
"R-TGU-451033",
"R-TGU-70982",
"R-HSA-70982",
"R-ATH-451033",
"R-SPO-70982",
"R-SPO-451033",
"R-XTR-451033",
"R-MMU-70982",
"R-DRE-70982",
"R-DME-70982",
"R-DME-451033",
"R-HSA-451033",
"R-SCE-451033",
"R-DDI-451033",
"R-OSA-451033",
"R-CFA-70982",
"R-XTR-70982",
"R-MMU-451033",
"R-OSA-70982",
"R-BTA-70982",
"R-DRE-451033",
"R-GGA-373141",
"R-RNO-451033",
"R-CEL-451033",
"R-ATH-70982",
"R-GGA-373145",
"R-CEL-70982",
"R-BTA-451033",
"R-SSC-451033",
"R-SCE-70982",
"R-CFA-451033",
"R-RNO-70982",
"R-GGA-70982",
"R-DDI-70982",
"R-GGA-451033",
"R-SSC-70982"
],
"rhea":[
"12463",
"12461",
"12462",
"12460"
],
"sabiork":[
"256"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00799"
]
}
},
{
"id":"FUMt2_2pp",
"name":"Fumarate transport via proton symport (2 H) (periplasm)",
"metabolites":{
"fum_c":1.0,
"fum_p":-1.0,
"h_c":2.0,
"h_p":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3614",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FUMt2_2pp"
]
},
"annotation":{
"bigg.reaction":[
"FUMt2_2pp"
],
"biocyc":[
"META:TRANS-RXN-121B"
],
"metanetx.reaction":[
"MNXR99711"
],
"rhea":[
"29332",
"29334",
"29333",
"29331"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08542",
"rxn10152"
]
}
},
{
"id":"FUMtex",
"name":"Fumarate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"fum_e":-1.0,
"fum_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FUMtex"
]
},
"annotation":{
"bigg.reaction":[
"FUMtex"
],
"biocyc":[
"META:TRANS-RXN0-553"
],
"metanetx.reaction":[
"MNXR99715"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08544",
"rxn11013"
]
}
},
{
"id":"GALBDtex",
"name":"Beta D-galactose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gal_bD_e":-1.0,
"gal_bD_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GALBDtex"
]
},
"annotation":{
"bigg.reaction":[
"GALBDtex"
],
"metanetx.reaction":[
"MNXR99953"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08574"
]
}
},
{
"id":"GALCTNLtex",
"name":"L-galactonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"galctn__L_e":-1.0,
"galctn__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2267 or STM1473 or STM0999 or STM0320",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GALCTNLtex"
]
},
"annotation":{
"bigg.reaction":[
"GALCTNLtex"
],
"metanetx.reaction":[
"MNXR99959"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08577"
]
}
},
{
"id":"G1PACT",
"name":"Glucosamine-1-phosphate N-acetyltransferase",
"metabolites":{
"accoa_c":-1.0,
"acgam1p_c":1.0,
"coa_c":1.0,
"gam1p_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3862",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"G1PACT"
]
},
"annotation":{
"bigg.reaction":[
"G1PACT"
],
"ec-code":[
"2.3.1.4",
"2.3.1.157"
],
"metanetx.reaction":[
"MNXR99841"
],
"sabiork":[
"4940"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03638"
]
}
},
{
"id":"EX_h2s_e",
"name":"Hydrogen sulfide exchange",
"metabolites":{
"h2s_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_h2s_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_h2s_e"
],
"biocyc":[
"META:TRANS-RXN-310"
],
"metanetx.reaction":[
"MNXR100494"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08690",
"rxn08689",
"rxn10541"
]
}
},
{
"id":"GALCTNt2pp",
"name":"D-galactonate transport via proton symport (periplasm)",
"metabolites":{
"galctn__D_c":1.0,
"galctn__D_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3827",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GALCTNt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GALCTNt2pp"
],
"biocyc":[
"META:TRANS-RXN-16"
],
"metanetx.reaction":[
"MNXR99960"
],
"rhea":[
"29836",
"29838",
"29837",
"29835"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08578",
"rxn10160"
]
}
},
{
"id":"GALCTNtex",
"name":"D-galactonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"galctn__D_e":-1.0,
"galctn__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GALCTNtex"
]
},
"annotation":{
"bigg.reaction":[
"GALCTNtex"
],
"metanetx.reaction":[
"MNXR99961"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08579"
]
}
},
{
"id":"EX_h_e",
"name":"H+ exchange",
"metabolites":{
"h_e":-1.0
},
"lower_bound":-100.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_h_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_h_e"
],
"biocyc":[
"META:RXN-14452"
],
"metanetx.reaction":[
"MNXR100765"
],
"reactome.reaction":[
"R-HSA-2534378",
"R-DDI-74723",
"R-BTA-170026",
"R-CFA-170026",
"R-SCE-74723",
"R-DRE-74723",
"R-HSA-170026",
"R-TGU-2534378",
"R-HSA-74723",
"R-CFA-2534378",
"R-TGU-74723",
"R-OSA-170026",
"R-RNO-2534378",
"R-GGA-2534378",
"R-MMU-2534378",
"R-BTA-2534378",
"R-SSC-2534378",
"R-DRE-170026",
"R-TGU-170026",
"R-GGA-170026",
"R-SCE-170026",
"R-DRE-2534378",
"R-BTA-74723",
"R-SPO-74723",
"R-XTR-74723",
"R-RNO-74723",
"R-XTR-2534378",
"R-MMU-74723",
"R-CFA-74723",
"R-GGA-74723",
"R-CEL-170026",
"R-MMU-170026",
"R-ATH-74723",
"R-DME-74723",
"R-PFA-74723",
"R-SSC-74723",
"R-XTR-170026",
"R-SSC-170026",
"R-CEL-74723",
"R-ATH-170026",
"R-RNO-170026",
"R-DME-170026"
],
"rhea":[
"34980",
"34981",
"34982",
"34979"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn11009",
"rxn08730"
]
}
},
{
"id":"GALCTt2rpp",
"name":"D-galactarte transport via proton symport, reversible (periplasm)",
"metabolites":{
"galct__D_c":1.0,
"galct__D_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2962",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GALCTt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"GALCTt2rpp"
],
"metanetx.reaction":[
"MNXR99962"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05565",
"rxn08580"
]
}
},
{
"id":"GALCTtex",
"name":"D-galactarte transport via diffusion (extracellular to periplasm)",
"metabolites":{
"galct__D_e":-1.0,
"galct__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GALCTtex"
]
},
"annotation":{
"bigg.reaction":[
"GALCTtex"
],
"biocyc":[
"META:TRANS-RXN0-203"
],
"metanetx.reaction":[
"MNXR99963"
],
"rhea":[
"28478",
"28480",
"28479",
"28481"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12441",
"rxn08581"
]
}
},
{
"id":"GALKr",
"name":"Galactokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gal1p_c":1.0,
"gal_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0774 or STM2101",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GALKr"
]
},
"annotation":{
"bigg.reaction":[
"GALKr"
],
"biocyc":[
"META:GALACTOKIN-RXN"
],
"ec-code":[
"2.7.1.6"
],
"kegg.reaction":[
"R01092"
],
"metanetx.reaction":[
"MNXR99985"
],
"rhea":[
"13556",
"13554",
"13555",
"13553"
],
"sabiork":[
"1354"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00808"
]
}
},
{
"id":"GAMptspp",
"name":"D-glucosamine transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"gam6p_c":1.0,
"gam_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1830 and STM1831 and STM1832 and STM2431 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GAMptspp"
]
},
"annotation":{
"bigg.reaction":[
"GAMptspp"
],
"metanetx.reaction":[
"MNXR100034"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08592",
"rxn05569"
]
}
},
{
"id":"GAMtex",
"name":"D-glucosamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gam_e":-1.0,
"gam_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GAMtex"
]
},
"annotation":{
"bigg.reaction":[
"GAMtex"
],
"metanetx.reaction":[
"MNXR100035"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08593"
]
}
},
{
"id":"GAPD",
"name":"Glyceraldehyde-3-phosphate dehydrogenase",
"metabolites":{
"13dpg_c":1.0,
"g3p_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1290",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"GAPD"
]
},
"annotation":{
"bigg.reaction":[
"GAPD"
],
"biocyc":[
"META:GAPOXNPHOSPHN-RXN"
],
"ec-code":[
"1.2.1.12",
"1.2.1.59"
],
"kegg.reaction":[
"R01061"
],
"metanetx.reaction":[
"MNXR100040"
],
"reactome.reaction":[
"R-ATH-70482",
"R-DME-70449",
"R-PFA-70482",
"R-SPO-70449",
"R-DRE-70449",
"R-CEL-70449",
"R-CEL-70482",
"R-CFA-70449",
"R-MMU-70482",
"R-HSA-70449",
"R-OSA-70482",
"R-GGA-352956",
"R-RNO-70449",
"R-SCE-70449",
"R-SSC-70482",
"R-ATH-70449",
"R-GGA-70482",
"R-OSA-70449",
"R-GGA-352921",
"R-DDI-70449",
"R-SPO-70482",
"R-TGU-70482",
"R-SCE-70482",
"R-HSA-70482",
"R-DME-70482",
"R-PFA-70449",
"R-XTR-70449",
"R-DRE-70482",
"R-XTR-70482",
"R-GGA-70449",
"R-RNO-70482",
"R-SSC-70449",
"R-DDI-70482",
"R-TGU-70449",
"R-MMU-70449",
"R-CFA-70482",
"R-BTA-70449",
"R-BTA-70482"
],
"rhea":[
"10303",
"10300",
"10302",
"10301"
],
"sabiork":[
"7844"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00781"
]
}
},
{
"id":"GARFT",
"name":"Phosphoribosylglycinamide formyltransferase",
"metabolites":{
"10fthf_c":-1.0,
"fgam_c":1.0,
"gar_c":-1.0,
"h_c":1.0,
"thf_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2500",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"GARFT"
]
},
"annotation":{
"bigg.reaction":[
"GARFT"
],
"ec-code":[
"2.1.2.2"
],
"kegg.reaction":[
"R04325"
],
"metanetx.reaction":[
"MNXR99623"
],
"rhea":[
"15053",
"15054",
"15055",
"15056"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GART",
"name":"GAR transformylase-T",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fgam_c":1.0,
"for_c":-1.0,
"gar_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1883",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"GART"
]
},
"annotation":{
"bigg.reaction":[
"GART"
],
"biocyc":[
"META:GARTRANSFORMYL2-RXN"
],
"ec-code":[
"2.1.2.-",
"2.1.2"
],
"kegg.reaction":[
"R06974"
],
"metanetx.reaction":[
"MNXR100042"
],
"rhea":[
"24830",
"24832",
"24831",
"24829"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04783"
]
}
},
{
"id":"GBBTNtex",
"name":"Gamma-butyrobetaine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gbbtn_e":-1.0,
"gbbtn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GBBTNtex"
]
},
"annotation":{
"bigg.reaction":[
"GBBTNtex"
],
"metanetx.reaction":[
"MNXR100053"
],
"rhea":[
"32838",
"32837",
"32835",
"32836"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08595"
]
}
},
{
"id":"GDMANE",
"name":"GDP-4-dehydro-6-deoxy-D-mannose epimerase",
"metabolites":{
"gdpddman_c":-1.0,
"gdpofuc_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2108",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GDMANE"
]
},
"annotation":{
"bigg.reaction":[
"GDMANE"
],
"ec-code":[
"5"
],
"metanetx.reaction":[
"MNXR100087"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08597"
]
}
},
{
"id":"GDPDPK",
"name":"GDP diphosphokinase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gdp_c":-1.0,
"h_c":1.0,
"ppgpp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2956 or STM3742",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GDPDPK"
]
},
"annotation":{
"bigg.reaction":[
"GDPDPK"
],
"biocyc":[
"META:GDPPYPHOSKIN-RXN"
],
"ec-code":[
"2.7.6.5"
],
"metanetx.reaction":[
"MNXR100088"
],
"rhea":[
"28098",
"28101",
"28099",
"28100"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08598"
]
}
},
{
"id":"GALM2pp",
"name":"Aldose-1-epimerase",
"metabolites":{
"gal_bD_p":-1.0,
"gal_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0773",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GALM2pp"
]
},
"annotation":{
"bigg.reaction":[
"GALM2pp"
],
"biocyc":[
"META:ALDOSE1EPIM-RXN"
],
"ec-code":[
"5.1.3.3"
],
"metanetx.reaction":[
"MNXR99987"
],
"rhea":[
"28677",
"28675",
"28676",
"28678"
],
"sabiork":[
"7775"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08582"
]
}
},
{
"id":"GALS3",
"name":"A-galactosidase (melibiose)",
"metabolites":{
"gal_c":1.0,
"glc__D_c":1.0,
"h2o_c":-1.0,
"melib_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4298",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GALS3"
]
},
"annotation":{
"bigg.reaction":[
"GALS3"
],
"biocyc":[
"META:ALPHAGALACTOSID-RXN"
],
"ec-code":[
"3.2.1.22"
],
"metanetx.reaction":[
"MNXR138470"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GALT1",
"name":"Galactosyltransferase I (LPS core synthesis)",
"metabolites":{
"gagicolipa_c":1.0,
"gicolipa_c":-1.0,
"h_c":1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3719",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"GALT1"
]
},
"annotation":{
"bigg.reaction":[
"GALT1"
],
"metanetx.reaction":[
"MNXR143120"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08583"
]
}
},
{
"id":"GALTtex",
"name":"Galactitol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"galt_e":-1.0,
"galt_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GALTtex"
]
},
"annotation":{
"bigg.reaction":[
"GALTtex"
],
"metanetx.reaction":[
"MNXR100019"
],
"rhea":[
"33146",
"33144",
"33143",
"33145"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08587"
]
}
},
{
"id":"GALURt2rpp",
"name":"D-galacturonate transport via proton symport, reversible (periplasm)",
"metabolites":{
"galur_c":1.0,
"galur_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3134",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GALURt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"GALURt2rpp"
],
"metanetx.reaction":[
"MNXR100020"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08588",
"rxn05673"
]
}
},
{
"id":"GDPMNH",
"name":"GDP-mannose mannosyl hydrolase",
"metabolites":{
"gdp_c":1.0,
"gdpmann_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"man_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2107",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GDPMNH"
]
},
"annotation":{
"bigg.reaction":[
"GDPMNH"
],
"metanetx.reaction":[
"MNXR100091"
],
"rhea":[
"28102",
"28104",
"28103",
"28105"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08599"
]
}
},
{
"id":"GALURtex",
"name":"D-galacturonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"galur_e":-1.0,
"galur_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GALURtex"
]
},
"annotation":{
"bigg.reaction":[
"GALURtex"
],
"metanetx.reaction":[
"MNXR100021"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08589"
]
}
},
{
"id":"EX_hacolipa_e",
"name":"Hepta-acylated core oligosaccharide lipid A (E. coli) exchange",
"metabolites":{
"hacolipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hacolipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hacolipa_e"
],
"metanetx.reaction":[
"MNXR143008"
],
"sbo":"SBO:0000627"
}
},
{
"id":"GALUi",
"name":"UTP-glucose-1-phosphate uridylyltransferase (irreversible)",
"metabolites":{
"g1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0,
"udpg_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1752 and STM2098",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GALUi"
]
},
"annotation":{
"bigg.reaction":[
"GALUi"
],
"biocyc":[
"META:GLUC1PURIDYLTRANS-RXN"
],
"ec-code":[
"2.7.7.9",
"2.7.7.64"
],
"kegg.reaction":[
"R00289"
],
"metanetx.reaction":[
"MNXR143121"
],
"reactome.reaction":[
"R-HSA-70286",
"R-DME-70286",
"R-BTA-70286",
"R-DDI-70286",
"R-CEL-70286",
"R-OSA-70286",
"R-RNO-70286",
"R-SCE-70286",
"R-SPO-70286",
"R-ATH-70286",
"R-DRE-70286",
"R-SSC-70286",
"R-XTR-70286",
"R-CFA-70286",
"R-MMU-70286",
"R-GGA-70286",
"R-TGU-70286"
],
"rhea":[
"19889",
"19892",
"19890",
"19891"
],
"sabiork":[
"8973",
"68"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00213"
]
}
},
{
"id":"GDPMNP",
"name":"GDP-mannose phyrophosphatase",
"metabolites":{
"gdpmann_c":-1.0,
"gmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"man1p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2477",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GDPMNP"
]
},
"annotation":{
"bigg.reaction":[
"GDPMNP"
],
"biocyc":[
"META:RXN0-5108"
],
"ec-code":[
"3.6.1.-",
"3.6.1.21"
],
"kegg.reaction":[
"R00881"
],
"metanetx.reaction":[
"MNXR100092"
],
"rhea":[
"27981",
"27980",
"27978",
"27979"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00639"
]
}
},
{
"id":"GDPtex",
"name":"GDP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gdp_e":-1.0,
"gdp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM1473 or STM2267 or STM0999",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GDPtex"
]
},
"annotation":{
"bigg.reaction":[
"GDPtex"
],
"metanetx.reaction":[
"MNXR100096"
],
"reactome.reaction":[
"R-HSA-111812"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08600",
"rxn09815"
]
}
},
{
"id":"GALabcpp",
"name":"D-galactose transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gal_c":1.0,
"gal_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2189 and STM2190 and STM2188",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GALabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GALabcpp"
],
"biocyc":[
"META:ABC-18-RXN"
],
"ec-code":[
"3.6.3.17"
],
"metanetx.reaction":[
"MNXR100023"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08573",
"rxn05162"
]
}
},
{
"id":"GF6PTA",
"name":"Glutamine-fructose-6-phosphate transaminase",
"metabolites":{
"f6p_c":-1.0,
"gam6p_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3861",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GF6PTA"
]
},
"annotation":{
"bigg.reaction":[
"GF6PTA"
],
"biocyc":[
"META:L-GLN-FRUCT-6-P-AMINOTRANS-RXN"
],
"ec-code":[
"2.6.1.16"
],
"metanetx.reaction":[
"MNXR100107"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GALt2pp",
"name":"D-galactose transport in via proton symport (periplasm)",
"metabolites":{
"gal_c":1.0,
"gal_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3091",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GALt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GALt2pp"
],
"biocyc":[
"META:TRANS-RXN-21"
],
"metanetx.reaction":[
"MNXR100026"
],
"rhea":[
"29019",
"29022",
"29021",
"29020"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05566",
"rxn08584"
]
}
},
{
"id":"EX_halipa_e",
"name":"Hepta-acylated KDO(2)-lipid (A) exchange",
"metabolites":{
"halipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_halipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_halipa_e"
],
"metanetx.reaction":[
"MNXR143009"
],
"sbo":"SBO:0000627"
}
},
{
"id":"GALtex",
"name":"D-galactose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gal_e":-1.0,
"gal_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GALtex"
]
},
"annotation":{
"bigg.reaction":[
"GALtex"
],
"metanetx.reaction":[
"MNXR100025"
],
"rhea":[
"34918",
"34917",
"34916",
"34915"
],
"sabiork":[
"7001"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10911",
"rxn08585"
]
}
},
{
"id":"GAM6Pt6_2pp",
"name":"D-Glucosamine 6-phosphate transport via phosphate antiport (periplasm)",
"metabolites":{
"gam6p_c":1.0,
"gam6p_p":-1.0,
"pi_c":-2.0,
"pi_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3787",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GAM6Pt6_2pp"
]
},
"annotation":{
"bigg.reaction":[
"GAM6Pt6_2pp"
],
"metanetx.reaction":[
"MNXR100032"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08590"
]
}
},
{
"id":"GHMT2r",
"name":"Glycine hydroxymethyltransferase, reversible",
"metabolites":{
"gly_c":1.0,
"h2o_c":1.0,
"mlthf_c":1.0,
"ser__L_c":-1.0,
"thf_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2555",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"GHMT2r"
]
},
"annotation":{
"bigg.reaction":[
"GHMT2r"
],
"ec-code":[
"2.1.2.1"
],
"kegg.reaction":[
"R00945"
],
"metanetx.reaction":[
"MNXR100142"
],
"rhea":[
"15481",
"15483",
"15484",
"15482"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GK1",
"name":"Guanylate kinase (GMP:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gdp_c":1.0,
"gmp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3740",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"GK1"
]
},
"annotation":{
"bigg.reaction":[
"GK1"
],
"biocyc":[
"META:GUANYL-KIN-RXN"
],
"ec-code":[
"2.7.4.8"
],
"kegg.reaction":[
"R00332"
],
"metanetx.reaction":[
"MNXR100144"
],
"rhea":[
"20783",
"20782",
"20780",
"20781"
],
"sabiork":[
"77"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00239"
]
}
},
{
"id":"GLBRAN2",
"name":"1,4-alpha-glucan branching enzyme (glycogen -> bglycogen)",
"metabolites":{
"bglycogen_c":1.0,
"glycogen_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3538",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"GLBRAN2"
]
},
"annotation":{
"bigg.reaction":[
"GLBRAN2"
],
"ec-code":[
"2.4.1.18"
],
"metanetx.reaction":[
"MNXR100155"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08605"
]
}
},
{
"id":"GAMAN6Ptex",
"name":"D-glucosamine 6-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gam6p_e":-1.0,
"gam6p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GAMAN6Ptex"
]
},
"annotation":{
"bigg.reaction":[
"GAMAN6Ptex"
],
"metanetx.reaction":[
"MNXR100031"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13642",
"rxn08591",
"rxn05568"
]
}
},
{
"id":"EX_hdca_e",
"name":"Hexadecanoate (n-C16:0) exchange",
"metabolites":{
"hdca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hdca_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hdca_e"
],
"metanetx.reaction":[
"MNXR99101"
],
"rhea":[
"45257",
"45256",
"45258",
"45259"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08704",
"rxn09848",
"rxn09676"
]
}
},
{
"id":"GLCATr",
"name":"D-glucose O-acetyltransferase",
"metabolites":{
"accoa_c":-1.0,
"acglc__D_c":1.0,
"coa_c":1.0,
"glc__D_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0472",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLCATr"
]
},
"annotation":{
"bigg.reaction":[
"GLCATr"
],
"ec-code":[
"2.3.1.79"
],
"metanetx.reaction":[
"MNXR143129"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08607"
]
}
},
{
"id":"GLCDpp",
"name":"Glucose dehydrogenase (ubiquinone-8 as acceptor) (periplasm)",
"metabolites":{
"glc__D_p":-1.0,
"glcn_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0861 or STM0169",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"GLCDpp"
]
},
"annotation":{
"bigg.reaction":[
"GLCDpp"
],
"metanetx.reaction":[
"MNXR100177"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08608",
"rxn10116"
]
}
},
{
"id":"EX_hdcea_e",
"name":"Hexadecenoate (n-C16:1) exchange",
"metabolites":{
"hdcea_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hdcea_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hdcea_e"
],
"metanetx.reaction":[
"MNXR99102"
],
"sbo":"SBO:0000627"
}
},
{
"id":"GLCNt2rpp",
"name":"D-gluconate transport via proton symport, reversible (periplasm)",
"metabolites":{
"glcn_c":1.0,
"glcn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3512 or STM4482 or STM3541",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLCNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"GLCNt2rpp"
],
"biocyc":[
"META:TRANS-RXN0-209"
],
"metanetx.reaction":[
"MNXR100209"
],
"rhea":[
"28834",
"28831",
"28833",
"28832"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08609",
"rxn05571"
]
}
},
{
"id":"GLXCL",
"name":"Glyoxalate carboligase",
"metabolites":{
"2h3oppan_c":1.0,
"co2_c":1.0,
"glx_c":-2.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0517",
"subsystem":"Glyoxylate Metabolism",
"notes":{
"original_bigg_ids":[
"GLXCL"
]
},
"annotation":{
"bigg.reaction":[
"GLXCL"
],
"biocyc":[
"META:GLYOCARBOLIG-RXN"
],
"ec-code":[
"4.1.1.47"
],
"kegg.reaction":[
"R00013"
],
"metanetx.reaction":[
"MNXR100303"
],
"rhea":[
"10138",
"10139",
"10137",
"10136"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00010"
]
}
},
{
"id":"GLYALDtex",
"name":"Glyceraldehyde transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyald_e":-1.0,
"glyald_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLYALDtex"
]
},
"annotation":{
"bigg.reaction":[
"GLYALDtex"
],
"metanetx.reaction":[
"MNXR100311"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08636",
"rxn08635",
"rxn10164"
]
}
},
{
"id":"GLYALDtpp",
"name":"Glyceraldehyde facilitated diffusion (periplasm)",
"metabolites":{
"glyald_c":1.0,
"glyald_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4087",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYALDtpp"
]
},
"annotation":{
"bigg.reaction":[
"GLYALDtpp"
],
"metanetx.reaction":[
"MNXR100311"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08636",
"rxn08635",
"rxn10164"
]
}
},
{
"id":"GLCNtex",
"name":"D-gluconate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glcn_e":-1.0,
"glcn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLCNtex"
]
},
"annotation":{
"bigg.reaction":[
"GLCNtex"
],
"metanetx.reaction":[
"MNXR100210"
],
"sabiork":[
"13786"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12424",
"rxn08610"
]
}
},
{
"id":"GLCP",
"name":"Glycogen phosphorylase",
"metabolites":{
"g1p_c":1.0,
"glycogen_c":-1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3534 or STM3514",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"GLCP"
]
},
"annotation":{
"bigg.reaction":[
"GLCP"
],
"metanetx.reaction":[
"MNXR100214"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13299"
]
}
},
{
"id":"GLCP2",
"name":"Glycogen phosphorylase",
"metabolites":{
"bglycogen_c":-1.0,
"g1p_c":1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3514 or STM3534",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"GLCP2"
]
},
"annotation":{
"bigg.reaction":[
"GLCP2"
],
"ec-code":[
"2.4.1.1"
],
"metanetx.reaction":[
"MNXR100215"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08611"
]
}
},
{
"id":"GLYAT",
"name":"Glycine C-acetyltransferase",
"metabolites":{
"2aobut_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"gly_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3709",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"GLYAT"
]
},
"annotation":{
"bigg.reaction":[
"GLYAT"
],
"biocyc":[
"META:AKBLIG-RXN"
],
"ec-code":[
"2.3.1.29",
"2.3.1.37"
],
"kegg.reaction":[
"R00371"
],
"metanetx.reaction":[
"MNXR100313"
],
"rhea":[
"20736",
"20737",
"20738",
"20739"
],
"sabiork":[
"838"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00274"
]
}
},
{
"id":"EX_hg2_e",
"name":"Hg2+ exchange",
"metabolites":{
"hg2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hg2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hg2_e"
],
"metanetx.reaction":[
"MNXR100625"
],
"rhea":[
"32815",
"32817",
"32816",
"32818"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05586",
"rxn08717"
]
}
},
{
"id":"GLYBabcpp",
"name":"Glycine betaine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glyb_c":1.0,
"glyb_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2162 and STM2163 and STM2164 and STM2165",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYBabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GLYBabcpp"
],
"biocyc":[
"META:TRANS-RXN-283"
],
"metanetx.reaction":[
"MNXR100314"
],
"rhea":[
"32784#1",
"32785#1",
"32783#1",
"32786#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05181",
"rxn08637",
"rxn11216"
]
}
},
{
"id":"GLYBtex_copy1",
"name":"Glycine betaine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyb_e":-1.0,
"glyb_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLYBtex",
"GLYBt6ex"
]
},
"annotation":{
"bigg.reaction":[
"GLYBtex"
],
"biocyc":[
"META:TRANS-RXN0-490"
],
"metanetx.reaction":[
"MNXR100317"
],
"reactome.reaction":[
"R-HSA-6797957"
],
"rhea":[
"28945",
"28944",
"28946",
"28943"
],
"sabiork":[
"11693"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08639",
"rxn12430"
]
}
},
{
"id":"GLYC2Ptex",
"name":"Glycerol-2-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyc2p_e":-1.0,
"glyc2p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLYC2Ptex"
]
},
"annotation":{
"bigg.reaction":[
"GLYC2Ptex"
],
"metanetx.reaction":[
"MNXR100319"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08640"
]
}
},
{
"id":"GLCRAL",
"name":"5-dehydro-4-deoxyglucarate aldolase",
"metabolites":{
"2h3oppan_c":1.0,
"5dh4dglc_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3249",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLCRAL"
]
},
"annotation":{
"bigg.reaction":[
"GLCRAL"
],
"biocyc":[
"META:KDGALDOL-RXN"
],
"ec-code":[
"4.1.2.20"
],
"kegg.reaction":[
"R02754"
],
"metanetx.reaction":[
"MNXR100219"
],
"rhea":[
"27727",
"27726",
"27728",
"27729"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01990"
]
}
},
{
"id":"GLCRD",
"name":"Glucarate dehydratase",
"metabolites":{
"5dh4dglc_c":1.0,
"glcr_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2960 or STM2961",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLCRD"
]
},
"annotation":{
"bigg.reaction":[
"GLCRD"
],
"biocyc":[
"META:GLUCARDEHYDRA-RXN"
],
"ec-code":[
"4.2.1.40"
],
"kegg.reaction":[
"R02752"
],
"metanetx.reaction":[
"MNXR100220"
],
"rhea":[
"14574",
"14576",
"14573",
"14575"
],
"sabiork":[
"2632"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01989"
]
}
},
{
"id":"GLCRt2rpp",
"name":"D-glucarate transport via proton symport, reversible (periplasm)",
"metabolites":{
"glcr_c":1.0,
"glcr_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2962",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLCRt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"GLCRt2rpp"
],
"metanetx.reaction":[
"MNXR100221"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05572",
"rxn08613"
]
}
},
{
"id":"GLCRtex",
"name":"D-glucarate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glcr_e":-1.0,
"glcr_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLCRtex"
]
},
"annotation":{
"bigg.reaction":[
"GLCRtex"
],
"biocyc":[
"META:TRANS-RXN0-204"
],
"metanetx.reaction":[
"MNXR100222"
],
"rhea":[
"28477",
"28476",
"28474",
"28475"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12442",
"rxn08614"
]
}
},
{
"id":"GLYC3Pabcpp",
"name":"Sn-Glycerol 3-phosphate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glyc3p_c":1.0,
"glyc3p_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3556 and STM3557 and STM3554 and STM3555",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYC3Pabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GLYC3Pabcpp"
],
"biocyc":[
"META:ABC-34-RXN",
"META:3.6.3.20-RXN"
],
"ec-code":[
"3.6.3.20"
],
"metanetx.reaction":[
"MNXR100320"
],
"rhea":[
"21669#1",
"21670#1",
"21668#1",
"21671#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05158",
"rxn08641"
]
}
},
{
"id":"GLCS1",
"name":"Glycogen synthase (ADPGlc)",
"metabolites":{
"adp_c":1.0,
"adpglc_c":-1.0,
"glycogen_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3535",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"GLCS1"
]
},
"annotation":{
"bigg.reaction":[
"GLCS1"
],
"ec-code":[
"2.4.1.21"
],
"metanetx.reaction":[
"MNXR100223"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13643"
]
}
},
{
"id":"GLYC3Pt6pp",
"name":"Glycerol-3-phosphate : phosphate antiporter (periplasm)",
"metabolites":{
"glyc3p_c":1.0,
"glyc3p_p":-1.0,
"pi_c":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2283",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYC3Pt6pp"
]
},
"annotation":{
"bigg.reaction":[
"GLYC3Pt6pp"
],
"biocyc":[
"META:TRANS-RXN-22"
],
"metanetx.reaction":[
"MNXR100321"
],
"rhea":[
"29016",
"29015",
"29018",
"29017"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08642",
"rxn10165"
]
}
},
{
"id":"EX_his__L_e",
"name":"L-Histidine exchange",
"metabolites":{
"his__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_his_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_his__L_e"
],
"metanetx.reaction":[
"MNXR100649"
],
"sabiork":[
"13472"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08721",
"rxn10932"
]
}
},
{
"id":"GLYC3Ptex",
"name":"Glycerol-3-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyc3p_e":-1.0,
"glyc3p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLYC3Ptex"
]
},
"annotation":{
"bigg.reaction":[
"GLYC3Ptex"
],
"metanetx.reaction":[
"MNXR100308"
],
"rhea":[
"34969",
"34967",
"34968",
"34970"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08643",
"rxn09749",
"rxn11234"
]
}
},
{
"id":"GLCTR1",
"name":"Glucosyltransferase I (LPS core synthesis)",
"metabolites":{
"gicolipa_c":1.0,
"h_c":1.0,
"icolipa_c":-1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3722",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"GLCTR1"
]
},
"annotation":{
"bigg.reaction":[
"GLCTR1"
],
"metanetx.reaction":[
"MNXR143137"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GLCTR2",
"name":"Glucosyltransferase II (LPS core synthesis)",
"metabolites":{
"gagicolipa_c":-1.0,
"ggagicolipa_c":1.0,
"h_c":1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3718",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"GLCTR2"
]
},
"annotation":{
"bigg.reaction":[
"GLCTR2"
],
"metanetx.reaction":[
"MNXR143138"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08619"
]
}
},
{
"id":"GLCTR3",
"name":"Glucosyltransferase III (LPS core synthesis)",
"metabolites":{
"ggagicolipa_c":-1.0,
"gggagicolipa_c":1.0,
"h_c":1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3717",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"GLCTR3"
]
},
"annotation":{
"bigg.reaction":[
"GLCTR3"
],
"metanetx.reaction":[
"MNXR143139"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08620"
]
}
},
{
"id":"GLCUR1Ptex",
"name":"D-glucuronate 1-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glcur1p_e":-1.0,
"glcur1p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLCUR1Ptex"
]
},
"annotation":{
"bigg.reaction":[
"GLCUR1Ptex"
],
"metanetx.reaction":[
"MNXR100231"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08621"
]
}
},
{
"id":"GLYCAt2rpp",
"name":"D-glycerate transport via proton symport, reversible (periplasm)",
"metabolites":{
"glyc__R_c":1.0,
"glyc__R_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2962",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYCAt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"GLYCAt2rpp"
],
"metanetx.reaction":[
"MNXR100322"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08644",
"rxn13711"
]
}
},
{
"id":"GLYCAtex",
"name":"D-glycerate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyc__R_e":-1.0,
"glyc__R_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLYCAtex"
]
},
"annotation":{
"bigg.reaction":[
"GLYCAtex"
],
"biocyc":[
"META:TRANS-RXN0-523"
],
"metanetx.reaction":[
"MNXR100323"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08645"
]
}
},
{
"id":"GLCURt2rpp",
"name":"D-glucuronate transport via proton symport, reversible (periplasm)",
"metabolites":{
"glcur_c":1.0,
"glcur_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3134 or STM0161",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLCURt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"GLCURt2rpp"
],
"metanetx.reaction":[
"MNXR100234"
],
"rhea":[
"28956",
"28958",
"28957",
"28955"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08622",
"rxn05574"
]
}
},
{
"id":"EX_hom__L_e",
"name":"L-Homoserine exchange",
"metabolites":{
"hom__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hom_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hom__L_e"
],
"metanetx.reaction":[
"MNXR100678"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08723"
]
}
},
{
"id":"GLCURtex",
"name":"D-glucuronat transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glcur_e":-1.0,
"glcur_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLCURtex"
]
},
"annotation":{
"bigg.reaction":[
"GLCURtex"
],
"metanetx.reaction":[
"MNXR100235"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08623"
]
}
},
{
"id":"GLCabcpp",
"name":"D-glucose transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glc__D_c":1.0,
"glc__D_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2189 and STM2190 and STM2188",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLCabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GLCabcpp"
],
"biocyc":[
"META:TRANS-RXN-320"
],
"ec-code":[
"3.6.3.17"
],
"metanetx.reaction":[
"MNXR100236"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08606",
"rxn05147"
]
}
},
{
"id":"GLYCDx",
"name":"Glycerol dehydrogenase",
"metabolites":{
"dha_c":1.0,
"glyc_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4108 or STM3529",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCDx"
]
},
"annotation":{
"bigg.reaction":[
"GLYCDx"
],
"biocyc":[
"META:GLYCDEH-RXN"
],
"ec-code":[
"1.1.1.6"
],
"kegg.reaction":[
"R01034"
],
"metanetx.reaction":[
"MNXR100326"
],
"rhea":[
"13770",
"13772",
"13769",
"13771"
],
"sabiork":[
"1322"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00762"
]
}
},
{
"id":"GLYCK",
"name":"Glycerate kinase",
"metabolites":{
"3pg_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"glyc__R_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2959 or STM2492 or STM3247 or STM0525",
"subsystem":"Glyoxylate Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCK"
]
},
"annotation":{
"bigg.reaction":[
"GLYCK"
],
"biocyc":[
"META:GLY3KIN-RXN"
],
"ec-code":[
"2.7.1.31"
],
"kegg.reaction":[
"R01514"
],
"metanetx.reaction":[
"MNXR100328"
],
"reactome.reaction":[
"R-MMU-6799495",
"R-TGU-6799495",
"R-DME-6799495",
"R-GGA-6799495",
"R-RNO-6799495",
"R-XTR-6799495",
"R-DRE-6799495",
"R-HSA-6799495",
"R-SSC-6799495",
"R-BTA-6799495",
"R-CEL-6799495",
"R-CFA-6799495"
],
"rhea":[
"23518",
"23519",
"23516",
"23517"
],
"sabiork":[
"428"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01102"
]
}
},
{
"id":"GLYCK2",
"name":"Glycerate kinase",
"metabolites":{
"2pg_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"glyc__R_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3247",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCK2"
]
},
"annotation":{
"bigg.reaction":[
"GLYCK2"
],
"biocyc":[
"META:GKI-RXN"
],
"ec-code":[
"2.7.1.31",
"2.7.1.165"
],
"kegg.reaction":[
"R08572"
],
"metanetx.reaction":[
"MNXR100329"
],
"rhea":[
"27380",
"27378",
"27379",
"27377"
],
"sabiork":[
"11393"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08647"
]
}
},
{
"id":"GLYCL",
"name":"Glycine Cleavage System",
"metabolites":{
"co2_c":1.0,
"gly_c":-1.0,
"mlthf_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"nh4_c":1.0,
"thf_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3054 and STM3053 and STM3055 and STM0154",
"subsystem":"Folate Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCL"
]
},
"annotation":{
"bigg.reaction":[
"GLYCL"
],
"ec-code":[
"1.4.4.2",
"1.8.1.4",
"2.1.2.10"
],
"kegg.reaction":[
"R01221"
],
"metanetx.reaction":[
"MNXR100330"
],
"rhea":[
"27760",
"27759",
"27761",
"27758"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GLYCLTDx",
"name":"Glycolate dehydrogenase (NAD)",
"metabolites":{
"glx_c":-1.0,
"glyclt_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646 or STM1135",
"subsystem":"Glyoxylate Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCLTDx"
]
},
"annotation":{
"bigg.reaction":[
"GLYCLTDx"
],
"biocyc":[
"META:GLYCOLATE-REDUCTASE-RXN"
],
"ec-code":[
"1.1.1.79",
"1.1.1.26",
"1.1.1.29"
],
"kegg.reaction":[
"R00717"
],
"metanetx.reaction":[
"MNXR100331"
],
"rhea":[
"18231",
"18230",
"18232",
"18229"
],
"sabiork":[
"425"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00512"
]
}
},
{
"id":"GLYCLTDy",
"name":"Glycolate dehydrogenase (NADP)",
"metabolites":{
"glx_c":-1.0,
"glyclt_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646 or STM1135",
"subsystem":"Glyoxylate Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCLTDy"
]
},
"annotation":{
"bigg.reaction":[
"GLYCLTDy"
],
"biocyc":[
"META:GLYOXYLATE-REDUCTASE-NADP+-RXN"
],
"ec-code":[
"1.1.1.79"
],
"kegg.reaction":[
"R00465"
],
"metanetx.reaction":[
"MNXR100332"
],
"reactome.reaction":[
"R-RNO-389826",
"R-XTR-389826",
"R-MMU-389826",
"R-DDI-389826",
"R-SPO-389826",
"R-GGA-389826",
"R-TGU-389826",
"R-ATH-389826",
"R-CFA-389826",
"R-DME-389826",
"R-BTA-389826",
"R-OSA-389826",
"R-SCE-389826",
"R-SSC-389826",
"R-DRE-389826",
"R-HSA-389826"
],
"rhea":[
"10995",
"10994",
"10993",
"10992"
],
"sabiork":[
"159"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00324"
]
}
},
{
"id":"GLCptspp",
"name":"D-glucose transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"g6p_c":1.0,
"glc__D_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2433 and STM1203 and STM2431 and STM2432) or (STM1830 and STM1831 and STM1832 and STM2431 and STM2432) or (STM2433 and STM1465 and STM2431 and STM2432)",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLCptspp"
]
},
"annotation":{
"bigg.reaction":[
"GLCptspp"
],
"metanetx.reaction":[
"MNXR100237"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08612",
"rxn05226"
]
}
},
{
"id":"GLCt2pp",
"name":"D-glucose transport in via proton symport (periplasm)",
"metabolites":{
"glc__D_c":1.0,
"glc__D_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3091",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLCt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GLCt2pp"
],
"biocyc":[
"META:RXN0-7077"
],
"metanetx.reaction":[
"MNXR100238"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08616",
"rxn05573"
]
}
},
{
"id":"GLCtex_copy1",
"name":"Glucose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glc__D_e":-1.0,
"glc__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLCtex",
"GLCtexi"
]
},
"annotation":{
"bigg.reaction":[
"GLCtex"
],
"biocyc":[
"META:TRANS-RXN0-574"
],
"metanetx.reaction":[
"MNXR100188"
],
"sabiork":[
"7002",
"601"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09875",
"rxn09679",
"rxn08617"
]
}
},
{
"id":"GLCtex_copy2",
"name":"Glucose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glc__D_e":-1.0,
"glc__D_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4231",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"GLCtex",
"GLCtexi"
]
},
"annotation":{
"bigg.reaction":[
"GLCtex"
],
"biocyc":[
"META:TRANS-RXN0-574"
],
"metanetx.reaction":[
"MNXR100188"
],
"sabiork":[
"7002",
"601"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09875",
"rxn09679",
"rxn08617"
]
}
},
{
"id":"GLYCLTt2rpp",
"name":"Glycolate transport via proton symport, reversible (periplasm)",
"metabolites":{
"glyclt_c":1.0,
"glyclt_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3692",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYCLTt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"GLYCLTt2rpp"
],
"biocyc":[
"META:TRANS-RXN-105"
],
"metanetx.reaction":[
"MNXR100334"
],
"rhea":[
"29414",
"29413",
"29411",
"29412"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05470",
"rxn08651"
]
}
},
{
"id":"GLYCLTt4pp",
"name":"Glycolate transport via sodium symport (periplasm)",
"metabolites":{
"glyclt_c":1.0,
"glyclt_p":-1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4273",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYCLTt4pp"
]
},
"annotation":{
"bigg.reaction":[
"GLYCLTt4pp"
],
"metanetx.reaction":[
"MNXR100335"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08652"
]
}
},
{
"id":"GLDBRAN2",
"name":"Glycogen debranching enzyme (bglycogen -> glycogen)",
"metabolites":{
"bglycogen_c":-1.0,
"glycogen_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3537",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"GLDBRAN2"
]
},
"annotation":{
"bigg.reaction":[
"GLDBRAN2"
],
"ec-code":[
"2.4.1.18"
],
"metanetx.reaction":[
"MNXR100155"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08605"
]
}
},
{
"id":"EX_hxa_e",
"name":"Hexanoate (n-C6:0) exchange",
"metabolites":{
"hxa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hxa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hxa_e"
],
"metanetx.reaction":[
"MNXR100750"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08732"
]
}
},
{
"id":"GLGC",
"name":"Glucose-1-phosphate adenylyltransferase",
"metabolites":{
"adpglc_c":1.0,
"atp_c":-1.0,
"g1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3536",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"GLGC"
]
},
"annotation":{
"bigg.reaction":[
"GLGC"
],
"biocyc":[
"META:GLUC1PADENYLTRANS-RXN"
],
"ec-code":[
"2.7.7.27"
],
"kegg.reaction":[
"R00948"
],
"metanetx.reaction":[
"MNXR100243"
],
"rhea":[
"12122",
"12121",
"12120",
"12123"
],
"sabiork":[
"9396",
"1262"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00695"
]
}
},
{
"id":"GLNS",
"name":"Glutamine synthetase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gln__L_c":1.0,
"glu__L_c":-1.0,
"h_c":1.0,
"nh4_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4007",
"subsystem":"Glutamate metabolism",
"notes":{
"original_bigg_ids":[
"GLNS"
]
},
"annotation":{
"bigg.reaction":[
"GLNS"
],
"biocyc":[
"META:GLUTAMINESYN-RXN"
],
"ec-code":[
"6.3.1.2"
],
"kegg.reaction":[
"R00253"
],
"metanetx.reaction":[
"MNXR100024"
],
"reactome.reaction":[
"R-GGA-70606",
"R-RNO-70606",
"R-TGU-70606",
"R-DME-70606",
"R-CEL-70606",
"R-DRE-70606",
"R-XTR-70606",
"R-SPO-70606",
"R-ATH-70606",
"R-CFA-70606",
"R-BTA-70606",
"R-OSA-70606",
"R-SSC-70606",
"R-MMU-70606",
"R-HSA-70606",
"R-SCE-70606"
],
"rhea":[
"16172",
"16171",
"16169",
"16170"
],
"sabiork":[
"760"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00187"
]
}
},
{
"id":"GLNTRS",
"name":"Glutaminyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gln__L_c":-1.0,
"glntrna_c":1.0,
"ppi_c":1.0,
"trnagln_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0686",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"GLNTRS"
]
},
"annotation":{
"bigg.reaction":[
"GLNTRS"
],
"ec-code":[
"6.1.1.18"
],
"kegg.reaction":[
"R03652"
],
"metanetx.reaction":[
"MNXR100257"
],
"reactome.reaction":[
"R-HSA-379982",
"R-HSA-380241"
],
"sabiork":[
"3430"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06437"
]
}
},
{
"id":"GLYCLTtex",
"name":"Glycolate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyclt_e":-1.0,
"glyclt_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLYCLTtex"
]
},
"annotation":{
"bigg.reaction":[
"GLYCLTtex"
],
"biocyc":[
"META:RXN0-5111"
],
"metanetx.reaction":[
"MNXR100333"
],
"rhea":[
"29448",
"29450",
"29449",
"29447"
],
"sabiork":[
"12468"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08653",
"rxn12426"
]
}
},
{
"id":"GLYCTO2",
"name":"Glycolate oxidase",
"metabolites":{
"glx_c":1.0,
"glyclt_c":-1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1620",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCTO2"
]
},
"annotation":{
"bigg.reaction":[
"GLYCTO2"
],
"metanetx.reaction":[
"MNXR100339"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08655"
]
}
},
{
"id":"GLYCTO3",
"name":"Glycolate oxidase",
"metabolites":{
"glx_c":1.0,
"glyclt_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1620",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCTO3"
]
},
"annotation":{
"bigg.reaction":[
"GLYCTO3"
],
"metanetx.reaction":[
"MNXR100340"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08656"
]
}
},
{
"id":"GLYCTO4",
"name":"Glycolate oxidase",
"metabolites":{
"2dmmq8_c":-1.0,
"2dmmql8_c":1.0,
"glx_c":1.0,
"glyclt_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1620",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLYCTO4"
]
},
"annotation":{
"bigg.reaction":[
"GLYCTO4"
],
"metanetx.reaction":[
"MNXR100341"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08657"
]
}
},
{
"id":"GLNabcpp",
"name":"L-glutamine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gln__L_c":1.0,
"gln__L_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0830 and STM0829 and STM0828",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GLNabcpp"
],
"biocyc":[
"META:ABC-12-RXN"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR100258"
],
"rhea":[
"29895#1",
"29897#1",
"29898#1",
"29896#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11233",
"rxn05196",
"rxn05155",
"rxn11101",
"rxn08624"
]
}
},
{
"id":"EX_hxan_e",
"name":"Hypoxanthine exchange",
"metabolites":{
"hxan_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_hxan_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_hxan_e"
],
"biocyc":[
"META:TRANS-RXN0-579",
"META:TRANS-RXN0-562"
],
"metanetx.reaction":[
"MNXR100749"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10143",
"rxn08737",
"rxn08738"
]
}
},
{
"id":"GLNtex",
"name":"L-glutamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gln__L_e":-1.0,
"gln__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0999 or STM1473 or STM2267 or STM0320",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLNtex"
]
},
"annotation":{
"bigg.reaction":[
"GLNtex"
],
"biocyc":[
"META:TRANS-RXN-233"
],
"metanetx.reaction":[
"MNXR100259"
],
"reactome.reaction":[
"R-HSA-212651",
"R-BTA-212614",
"R-RNO-212614",
"R-SSC-212614",
"R-MMU-212614",
"R-HSA-212614",
"R-GGA-212614",
"R-CFA-212614",
"R-TGU-212614",
"R-SCE-212614"
],
"sabiork":[
"13421"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08625",
"rxn10928"
]
}
},
{
"id":"GLYCtex",
"name":"Glycerol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyc_e":-1.0,
"glyc_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLYCtex"
]
},
"annotation":{
"bigg.reaction":[
"GLYCtex"
],
"biocyc":[
"META:TRANS-RXN-131"
],
"metanetx.reaction":[
"MNXR100343"
],
"reactome.reaction":[
"R-RNO-507871",
"R-SCE-507871",
"R-MMU-432049",
"R-GGA-507869",
"R-SCE-432049",
"R-MMU-507869",
"R-CEL-507869",
"R-SPO-432049",
"R-TGU-432049",
"R-HSA-507871",
"R-PFA-432074",
"R-GGA-432049",
"R-PFA-432049",
"R-BTA-432049",
"R-MMU-507871",
"R-CEL-507871",
"R-XTR-507871",
"R-HSA-507869",
"R-SCE-507869",
"R-DRE-507869",
"R-PFA-507869",
"R-TGU-507869",
"R-RNO-507869",
"R-MMU-432074",
"R-SPO-432074",
"R-BTA-432074",
"R-CFA-432074",
"R-CEL-432074",
"R-PFA-507871",
"R-SSC-432074",
"R-CFA-507871",
"R-SPO-507871",
"R-BTA-507871",
"R-XTR-432049",
"R-HSA-432049",
"R-DRE-432074",
"R-CFA-432049",
"R-SPO-507869",
"R-GGA-432074",
"R-HSA-432074",
"R-RNO-432074",
"R-SCE-432074",
"R-TGU-507871",
"R-GGA-507871",
"R-DRE-432049",
"R-BTA-507869",
"R-SSC-507871",
"R-XTR-432074",
"R-XTR-507869",
"R-CFA-507869",
"R-RNO-432049",
"R-SSC-507869",
"R-SSC-432049",
"R-TGU-432074",
"R-CEL-432049",
"R-DRE-507871"
],
"rhea":[
"29676",
"29678",
"29677",
"29675"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05581",
"rxn08654",
"rxn08658"
]
}
},
{
"id":"GLYCtpp",
"name":"Glycerol transport via channel (periplasm)",
"metabolites":{
"glyc_c":-1.0,
"glyc_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001 or STM4087",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYCtpp"
]
},
"annotation":{
"bigg.reaction":[
"GLYCtpp"
],
"biocyc":[
"META:TRANS-RXN-131"
],
"metanetx.reaction":[
"MNXR100343"
],
"reactome.reaction":[
"R-RNO-507871",
"R-SCE-507871",
"R-MMU-432049",
"R-GGA-507869",
"R-SCE-432049",
"R-MMU-507869",
"R-CEL-507869",
"R-SPO-432049",
"R-TGU-432049",
"R-HSA-507871",
"R-PFA-432074",
"R-GGA-432049",
"R-PFA-432049",
"R-BTA-432049",
"R-MMU-507871",
"R-CEL-507871",
"R-XTR-507871",
"R-HSA-507869",
"R-SCE-507869",
"R-DRE-507869",
"R-PFA-507869",
"R-TGU-507869",
"R-RNO-507869",
"R-MMU-432074",
"R-SPO-432074",
"R-BTA-432074",
"R-CFA-432074",
"R-CEL-432074",
"R-PFA-507871",
"R-SSC-432074",
"R-CFA-507871",
"R-SPO-507871",
"R-BTA-507871",
"R-XTR-432049",
"R-HSA-432049",
"R-DRE-432074",
"R-CFA-432049",
"R-SPO-507869",
"R-GGA-432074",
"R-HSA-432074",
"R-RNO-432074",
"R-SCE-432074",
"R-TGU-507871",
"R-GGA-507871",
"R-DRE-432049",
"R-BTA-507869",
"R-SSC-507871",
"R-XTR-432074",
"R-XTR-507869",
"R-CFA-507869",
"R-RNO-432049",
"R-SSC-507869",
"R-SSC-432049",
"R-TGU-432074",
"R-CEL-432049",
"R-DRE-507871"
],
"rhea":[
"29676",
"29678",
"29677",
"29675"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05581",
"rxn08654",
"rxn08658"
]
}
},
{
"id":"GLU5K",
"name":"Glutamate 5-kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glu5p_c":1.0,
"glu__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0321",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"GLU5K"
]
},
"annotation":{
"bigg.reaction":[
"GLU5K"
],
"biocyc":[
"META:GLUTKIN-RXN"
],
"ec-code":[
"2.7.2.11"
],
"kegg.reaction":[
"R00239"
],
"metanetx.reaction":[
"MNXR100277"
],
"rhea":[
"14878",
"14880",
"14877",
"14879"
],
"sabiork":[
"752"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00179"
]
}
},
{
"id":"EX_idon__L_e",
"name":"L-Idonate exchange",
"metabolites":{
"idon__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_idon_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_idon__L_e"
],
"metanetx.reaction":[
"MNXR100804"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08743"
]
}
},
{
"id":"GLUCYS",
"name":"Gamma-glutamylcysteine synthetase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cys__L_c":-1.0,
"glu__L_c":-1.0,
"glucys_c":1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2818",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GLUCYS"
]
},
"annotation":{
"bigg.reaction":[
"GLUCYS"
],
"biocyc":[
"META:GLUTCYSLIG-RXN"
],
"ec-code":[
"6.3.2.2"
],
"kegg.reaction":[
"R00894"
],
"metanetx.reaction":[
"MNXR100074"
],
"reactome.reaction":[
"R-XTR-174367",
"R-RNO-174367",
"R-HSA-174367",
"R-SSC-174367",
"R-CEL-174367",
"R-SPO-174367",
"R-MMU-174367",
"R-DME-174367",
"R-CFA-174367",
"R-TGU-174367",
"R-DRE-174367",
"R-BTA-174367"
],
"rhea":[
"13285",
"13287",
"13286",
"13288"
],
"sabiork":[
"1217"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00646"
]
}
},
{
"id":"GLYK",
"name":"Glycerol kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glyc3p_c":1.0,
"glyc_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4086",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLYK"
]
},
"annotation":{
"bigg.reaction":[
"GLYK"
],
"biocyc":[
"META:GLYCEROL-KIN-RXN"
],
"ec-code":[
"2.7.1.30"
],
"kegg.reaction":[
"R00847"
],
"metanetx.reaction":[
"MNXR100348"
],
"reactome.reaction":[
"R-DME-75887",
"R-TGU-75887",
"R-CFA-75887",
"R-MMU-75887",
"R-DDI-75887",
"R-HSA-75887",
"R-XTR-75887",
"R-OSA-75887",
"R-SCE-75887",
"R-RNO-75887",
"R-CEL-75887",
"R-DRE-75887",
"R-ATH-75887",
"R-SSC-75887",
"R-BTA-75887",
"R-GGA-75887",
"R-PFA-75887"
],
"rhea":[
"21644",
"21645",
"21647",
"21646"
],
"sabiork":[
"99"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00615"
]
}
},
{
"id":"GLYOX",
"name":"Hydroxyacylglutathione hydrolase",
"metabolites":{
"gthrd_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"lac__D_c":1.0,
"lgt__S_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0261",
"subsystem":"Methylglyoxal Metabolism",
"notes":{
"original_bigg_ids":[
"GLYOX"
]
},
"annotation":{
"bigg.reaction":[
"GLYOX"
],
"biocyc":[
"META:GLYOXII-RXN"
],
"ec-code":[
"3.1.2.6"
],
"kegg.reaction":[
"R01736"
],
"metanetx.reaction":[
"MNXR100353"
],
"rhea":[
"25246",
"25247",
"25245",
"25248"
],
"sabiork":[
"9752",
"283"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01274"
]
}
},
{
"id":"GLUDy",
"name":"Glutamate dehydrogenase (NADP)",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"nh4_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1299",
"subsystem":"Glutamate Metabolism",
"notes":{
"original_bigg_ids":[
"GLUDy"
]
},
"annotation":{
"bigg.reaction":[
"GLUDy"
],
"biocyc":[
"META:GLUTDEHYD-RXN"
],
"ec-code":[
"1.4.1.13",
"1.4.1.3",
"1.4.1.4"
],
"kegg.reaction":[
"R00248"
],
"metanetx.reaction":[
"MNXR100086"
],
"rhea":[
"11613",
"11614",
"11612",
"11615"
],
"sabiork":[
"757"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00184"
]
}
},
{
"id":"GLYOX3",
"name":"Glyoxalase III",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"lac__D_c":1.0,
"mthgxl_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Methylglyoxal Metabolism",
"notes":{
"original_bigg_ids":[
"GLYOX3"
]
},
"annotation":{
"bigg.reaction":[
"GLYOX3"
],
"biocyc":[
"META:GLYOXIII-RXN"
],
"ec-code":[
"4.2.1.130"
],
"kegg.reaction":[
"R09796"
],
"metanetx.reaction":[
"MNXR100354"
],
"rhea":[
"27757",
"27755",
"27756",
"27754"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08659"
]
}
},
{
"id":"GLUN",
"name":"Glutaminase",
"metabolites":{
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1525",
"subsystem":"Glutamate Metabolism",
"notes":{
"original_bigg_ids":[
"GLUN"
]
},
"annotation":{
"bigg.reaction":[
"GLUN"
],
"biocyc":[
"META:GLUTAMIN-RXN"
],
"ec-code":[
"6.3.5.2",
"4.3.3.6",
"6.3.5.5",
"1.4.7.1",
"6.3.5.4",
"3.5.1.2",
"6.3.4.2",
"1.4.1.13",
"3.5.1.38"
],
"kegg.reaction":[
"R00256"
],
"metanetx.reaction":[
"MNXR100030"
],
"reactome.reaction":[
"R-TGU-70609",
"R-XTR-70609",
"R-SSC-70609",
"R-GGA-70609",
"R-DDI-70609",
"R-MMU-70609",
"R-DME-70609",
"R-RNO-70609",
"R-CEL-70609",
"R-BTA-70609",
"R-DRE-70609",
"R-HSA-70609",
"R-CFA-70609"
],
"rhea":[
"15892",
"15889",
"15891",
"15890"
],
"sabiork":[
"762"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00189"
]
}
},
{
"id":"EX_ile__L_e",
"name":"L-Isoleucine exchange",
"metabolites":{
"ile__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ile_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ile__L_e"
],
"metanetx.reaction":[
"MNXR100824"
],
"sabiork":[
"13467"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08747",
"rxn13323",
"rxn10933"
]
}
},
{
"id":"GLUNpp",
"name":"Glutaminase",
"metabolites":{
"gln__L_p":-1.0,
"glu__L_p":1.0,
"h2o_p":-1.0,
"nh4_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3106",
"subsystem":"Glutamate Metabolism",
"notes":{
"original_bigg_ids":[
"GLUNpp"
]
},
"annotation":{
"bigg.reaction":[
"GLUNpp"
],
"biocyc":[
"META:GLUTAMIN-RXN"
],
"ec-code":[
"6.3.5.2",
"4.3.3.6",
"6.3.5.5",
"1.4.7.1",
"6.3.5.4",
"3.5.1.2",
"6.3.4.2",
"1.4.1.13",
"3.5.1.38"
],
"kegg.reaction":[
"R00256"
],
"metanetx.reaction":[
"MNXR100030"
],
"reactome.reaction":[
"R-TGU-70609",
"R-XTR-70609",
"R-SSC-70609",
"R-GGA-70609",
"R-DDI-70609",
"R-MMU-70609",
"R-DME-70609",
"R-RNO-70609",
"R-CEL-70609",
"R-BTA-70609",
"R-DRE-70609",
"R-HSA-70609",
"R-CFA-70609"
],
"rhea":[
"15892",
"15889",
"15891",
"15890"
],
"sabiork":[
"762"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00189"
]
}
},
{
"id":"GLUPRT",
"name":"Glutamine phosphoribosyldiphosphate amidotransferase",
"metabolites":{
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"ppi_c":1.0,
"pram_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2362",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"GLUPRT"
]
},
"annotation":{
"bigg.reaction":[
"GLUPRT"
],
"biocyc":[
"META:PRPPAMIDOTRANS-RXN"
],
"ec-code":[
"2.4.2.14"
],
"kegg.reaction":[
"R01072"
],
"metanetx.reaction":[
"MNXR100287"
],
"reactome.reaction":[
"R-DME-73815",
"R-GGA-73815",
"R-SPO-73815",
"R-OSA-73815",
"R-TGU-73815",
"R-GGA-419152",
"R-ATH-73815",
"R-MMU-73815",
"R-SSC-73815",
"R-DDI-73815",
"R-CEL-73815",
"R-CFA-73815",
"R-SCE-73815",
"R-BTA-73815",
"R-RNO-73815",
"R-XTR-73815",
"R-DRE-73815",
"R-HSA-73815"
],
"rhea":[
"14905",
"14908",
"14906",
"14907"
],
"sabiork":[
"114"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00790"
]
}
},
{
"id":"GLUR",
"name":"Glutamate racemase",
"metabolites":{
"glu__D_c":-1.0,
"glu__L_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4131",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GLUR"
]
},
"annotation":{
"bigg.reaction":[
"GLUR"
],
"biocyc":[
"META:GLUTRACE-RXN"
],
"ec-code":[
"5.1.1.3"
],
"kegg.reaction":[
"R00260"
],
"metanetx.reaction":[
"MNXR100288"
],
"rhea":[
"12813",
"12814",
"12815",
"12816"
],
"sabiork":[
"765"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00193"
]
}
},
{
"id":"GLYTRS",
"name":"Glycyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gly_c":-1.0,
"glytrna_c":1.0,
"ppi_c":1.0,
"trnagly_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3655 and STM3656",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"GLYTRS"
]
},
"annotation":{
"bigg.reaction":[
"GLYTRS"
],
"ec-code":[
"6.1.1.14"
],
"kegg.reaction":[
"R03654"
],
"metanetx.reaction":[
"MNXR100365"
],
"reactome.reaction":[
"R-HSA-380240",
"R-HSA-380048"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06438"
]
}
},
{
"id":"GLYt2pp",
"name":"Glycine transport in via proton symport (periplasm)",
"metabolites":{
"gly_c":1.0,
"gly_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4398",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLYt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GLYt2pp"
],
"biocyc":[
"META:TRANS-RXN-62B"
],
"metanetx.reaction":[
"MNXR100368"
],
"rhea":[
"28901",
"28902",
"28900",
"28899"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08660",
"rxn09748",
"rxn05582"
]
}
},
{
"id":"GLYtex",
"name":"Glycine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gly_e":-1.0,
"gly_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLYtex"
]
},
"annotation":{
"bigg.reaction":[
"GLYtex"
],
"biocyc":[
"META:TRANS-RXN0-537"
],
"metanetx.reaction":[
"MNXR100371"
],
"reactome.reaction":[
"R-CEL-351963",
"R-GGA-351963",
"R-SSC-351963",
"R-TGU-351963",
"R-BTA-351963",
"R-DRE-351963",
"R-RNO-351963",
"R-MMU-351963",
"R-CFA-351963",
"R-HSA-351963"
],
"sabiork":[
"13462"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05218",
"rxn08662",
"rxn13111"
]
}
},
{
"id":"GMAND",
"name":"GDP-D-mannose dehydratase",
"metabolites":{
"gdpddman_c":1.0,
"gdpmann_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2109",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GMAND"
]
},
"annotation":{
"bigg.reaction":[
"GMAND"
],
"biocyc":[
"META:GDPMANDEHYDRA-RXN"
],
"ec-code":[
"4.2.1.47"
],
"kegg.reaction":[
"R00888"
],
"metanetx.reaction":[
"MNXR100377"
],
"rhea":[
"23823",
"23822",
"23820",
"23821"
],
"sabiork":[
"588"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00642"
]
}
},
{
"id":"GLUSy",
"name":"Glutamate synthase (NADPH)",
"metabolites":{
"akg_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":2.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3330 and STM3331",
"subsystem":"Glutamate metabolism",
"notes":{
"original_bigg_ids":[
"GLUSy"
]
},
"annotation":{
"bigg.reaction":[
"GLUSy"
],
"biocyc":[
"META:GLUTAMATESYN-RXN"
],
"ec-code":[
"1.4.1.13"
],
"kegg.reaction":[
"R00114"
],
"metanetx.reaction":[
"MNXR100291"
],
"rhea":[
"15503",
"15501",
"15504",
"15502"
],
"sabiork":[
"694"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00085"
]
}
},
{
"id":"GLUTRR",
"name":"Glutamyl-tRNA reductase",
"metabolites":{
"glu1sa_c":1.0,
"glutrna_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"trnaglu_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1777",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GLUTRR"
]
},
"annotation":{
"bigg.reaction":[
"GLUTRR"
],
"ec-code":[
"1.2.1.70"
],
"kegg.reaction":[
"R04109"
],
"metanetx.reaction":[
"MNXR100294"
],
"sabiork":[
"9145"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06591"
]
}
},
{
"id":"EX_imp_e",
"name":"IMP exchange",
"metabolites":{
"imp_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_imp_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_imp_e"
],
"biocyc":[
"META:TRANS-RXN0-566"
],
"metanetx.reaction":[
"MNXR100831"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08749"
]
}
},
{
"id":"GLUTRS",
"name":"Glutamyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"glu__L_c":-1.0,
"glutrna_c":1.0,
"ppi_c":1.0,
"trnaglu_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2415",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GLUTRS"
]
},
"annotation":{
"bigg.reaction":[
"GLUTRS"
],
"ec-code":[
"6.1.1",
"6.1.1.17",
"6.1.1.24"
],
"kegg.reaction":[
"R05578"
],
"metanetx.reaction":[
"MNXR100295"
],
"reactome.reaction":[
"R-HSA-379861",
"R-HSA-380216"
],
"sabiork":[
"5179"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06937"
]
}
},
{
"id":"GLUabcpp",
"name":"L-glutamate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glu__L_c":1.0,
"glu__L_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0665 and STM0664 and STM0663 and STM0662",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLUabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GLUabcpp"
],
"biocyc":[
"META:ABC-13-RXN"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR100299"
],
"rhea":[
"29038#1",
"29035#1",
"29037#1",
"29036#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11235",
"rxn08627",
"rxn05146"
]
}
},
{
"id":"GMHEPAT",
"name":"D-glycero-D-manno-hepose 1-phosphate adenyltransferase",
"metabolites":{
"adphep_DD_c":1.0,
"atp_c":-1.0,
"gmhep1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3200",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"GMHEPAT"
]
},
"annotation":{
"bigg.reaction":[
"GMHEPAT"
],
"biocyc":[
"META:RXN0-4342"
],
"ec-code":[
"2.7.7.70"
],
"kegg.reaction":[
"R05644"
],
"metanetx.reaction":[
"MNXR100378"
],
"rhea":[
"27468",
"27466",
"27467",
"27465"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13940",
"rxn03916"
]
}
},
{
"id":"GMHEPK",
"name":"D-glycero-D-manno-heptose 7-phosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gmhep17bp_c":1.0,
"gmhep7p_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3200",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"GMHEPK"
]
},
"annotation":{
"bigg.reaction":[
"GMHEPK"
],
"metanetx.reaction":[
"MNXR143147"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GMHEPPA",
"name":"D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase",
"metabolites":{
"gmhep17bp_c":-1.0,
"gmhep1p_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0248",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"GMHEPPA"
]
},
"annotation":{
"bigg.reaction":[
"GMHEPPA"
],
"metanetx.reaction":[
"MNXR100380"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GLUt2rpp",
"name":"L-glutamate transport via proton symport, reversible (periplasm)",
"metabolites":{
"glu__L_c":1.0,
"glu__L_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4283",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLUt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"GLUt2rpp"
],
"metanetx.reaction":[
"MNXR100300"
],
"reactome.reaction":[
"R-SCE-8875623",
"R-MMU-8875623",
"R-TGU-8875623",
"R-XTR-8875623",
"R-SSC-8875623",
"R-DME-8875623",
"R-CEL-8875623",
"R-DRE-8875623",
"R-GGA-8875623",
"R-HSA-8875623",
"R-RNO-8875623",
"R-DDI-8875623",
"R-CFA-8875623",
"R-BTA-8875623"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05297",
"rxn09813",
"rxn13303",
"rxn09751",
"rxn08631"
]
}
},
{
"id":"GLUt4pp",
"name":"Na+/glutamate symport (periplasm)",
"metabolites":{
"glu__L_c":1.0,
"glu__L_p":-1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3746",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GLUt4pp"
]
},
"annotation":{
"bigg.reaction":[
"GLUt4pp"
],
"metanetx.reaction":[
"MNXR100285"
],
"rhea":[
"29034",
"29033",
"29032",
"29031"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05298",
"rxn08632"
]
}
},
{
"id":"EX_indole_e",
"name":"Indole exchange",
"metabolites":{
"indole_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_indole_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_indole_e"
],
"biocyc":[
"META:TRANS-RXN0-563"
],
"metanetx.reaction":[
"MNXR100836"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08751"
]
}
},
{
"id":"GLUtex",
"name":"L-glutamate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glu__L_e":-1.0,
"glu__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GLUtex"
]
},
"annotation":{
"bigg.reaction":[
"GLUtex"
],
"biocyc":[
"META:TRANS-RXN-234",
"META:TRANS-RXN-232"
],
"metanetx.reaction":[
"MNXR100301"
],
"reactome.reaction":[
"R-HSA-212658",
"R-TGU-210439",
"R-GGA-210439",
"R-XTR-210439",
"R-RNO-210439",
"R-CFA-210439",
"R-CEL-210439",
"R-DME-210439",
"R-SSC-210439",
"R-HSA-210439",
"R-DRE-210439",
"R-MMU-210439",
"R-BTA-210439"
],
"sabiork":[
"12283"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08633",
"rxn09750",
"rxn13304",
"rxn13120",
"rxn10917"
]
}
},
{
"id":"GMPR",
"name":"GMP reductase",
"metabolites":{
"gmp_c":-1.0,
"h_c":-2.0,
"imp_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0141",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"GMPR"
]
},
"annotation":{
"bigg.reaction":[
"GMPR"
],
"biocyc":[
"META:GMP-REDUCT-RXN"
],
"ec-code":[
"1.7.1.7"
],
"kegg.reaction":[
"R01134"
],
"metanetx.reaction":[
"MNXR100382"
],
"rhea":[
"17186",
"17188",
"17187",
"17185"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00837"
]
}
},
{
"id":"GMPS2",
"name":"GMP synthase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"gmp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"ppi_c":1.0,
"xmp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2510",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"GMPS2"
]
},
"annotation":{
"bigg.reaction":[
"GMPS2"
],
"biocyc":[
"META:GMP-SYN-GLUT-RXN"
],
"ec-code":[
"6.3.5.2"
],
"kegg.reaction":[
"R01231"
],
"metanetx.reaction":[
"MNXR100384"
],
"rhea":[
"11680",
"11682",
"11681",
"11683"
],
"sabiork":[
"215"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00917"
]
}
},
{
"id":"EX_inost_e",
"name":"Myo-Inositol exchange",
"metabolites":{
"inost_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_inost_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_inost_e"
],
"metanetx.reaction":[
"MNXR100848"
],
"rhea":[
"32867",
"32869",
"32870",
"32868"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08755"
]
}
},
{
"id":"GMPtex",
"name":"GMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gmp_e":-1.0,
"gmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GMPtex"
]
},
"annotation":{
"bigg.reaction":[
"GMPtex"
],
"biocyc":[
"META:TRANS-RXN0-565"
],
"metanetx.reaction":[
"MNXR100386"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08664"
]
}
},
{
"id":"GND",
"name":"Phosphogluconate dehydrogenase",
"metabolites":{
"6pgc_c":-1.0,
"co2_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"ru5p__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2081",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"GND"
]
},
"annotation":{
"bigg.reaction":[
"GND"
],
"biocyc":[
"META:RXN-9952"
],
"ec-code":[
"1.1.1.44",
"1.1.1.351"
],
"kegg.reaction":[
"R01528"
],
"metanetx.reaction":[
"MNXR100389"
],
"reactome.reaction":[
"R-PFA-71299",
"R-GGA-71299",
"R-HSA-71299",
"R-SPO-71299",
"R-XTR-71299",
"R-ATH-71299",
"R-TGU-71299",
"R-OSA-71299",
"R-MMU-71299",
"R-DRE-71299",
"R-SCE-71299",
"R-SSC-71299",
"R-DDI-71299",
"R-CFA-71299",
"R-DME-71299",
"R-BTA-71299",
"R-CEL-71299"
],
"rhea":[
"10116",
"10117",
"10118",
"10119"
],
"sabiork":[
"108"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01115"
]
}
},
{
"id":"GTHOXtex",
"name":"Glutathione (ox) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gthox_e":-1.0,
"gthox_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GTHOXtex"
]
},
"annotation":{
"bigg.reaction":[
"GTHOXtex"
],
"metanetx.reaction":[
"MNXR100443"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09677",
"rxn08674"
]
}
},
{
"id":"EX_ins_e",
"name":"Inosine exchange",
"metabolites":{
"ins_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_ins_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_ins_e"
],
"metanetx.reaction":[
"MNXR100849"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08754"
]
}
},
{
"id":"GTHOr",
"name":"Glutathione oxidoreductase",
"metabolites":{
"gthox_c":-1.0,
"gthrd_c":2.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3597",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTHOr"
]
},
"annotation":{
"bigg.reaction":[
"GTHOr"
],
"biocyc":[
"META:GLUTATHIONE-REDUCT-NADPH-RXN"
],
"ec-code":[
"1.8.1.7"
],
"kegg.reaction":[
"R00115"
],
"metanetx.reaction":[
"MNXR100098"
],
"reactome.reaction":[
"R-BTA-3323079",
"R-DDI-3323079",
"R-DDI-71682",
"R-SPO-71682",
"R-DRE-3323079",
"R-CEL-71682",
"R-GGA-71682",
"R-ATH-3323079",
"R-XTR-71682",
"R-DRE-71682",
"R-SCE-3323079",
"R-ATH-71682",
"R-MMU-3323079",
"R-OSA-71682",
"R-SPO-3323079",
"R-BTA-71682",
"R-TGU-71682",
"R-GGA-3323079",
"R-MMU-71682",
"R-CFA-71682",
"R-SSC-3323079",
"R-HSA-3323079",
"R-RNO-71682",
"R-CFA-3323079",
"R-PFA-3323079",
"R-CEL-3323079",
"R-HSA-71682",
"R-XTR-3323079",
"R-SCE-71682",
"R-TGU-3323079",
"R-PFA-71682",
"R-SSC-71682",
"R-RNO-3323079",
"R-OSA-3323079"
],
"rhea":[
"11740",
"11743",
"11742",
"11741"
],
"sabiork":[
"695"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00086"
]
}
},
{
"id":"GTHRDHpp",
"name":"Glutathione hydralase (periplasmic)",
"metabolites":{
"cgly_p":1.0,
"glu__L_p":1.0,
"gthrd_p":-1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3551",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTHRDHpp"
]
},
"annotation":{
"bigg.reaction":[
"GTHRDHpp"
],
"biocyc":[
"META:RXN-12618",
"META:RXN-15856"
],
"ec-code":[
"3.4.19",
"3.4.19.13"
],
"kegg.reaction":[
"R00494"
],
"metanetx.reaction":[
"MNXR100136"
],
"reactome.reaction":[
"R-CEL-8943279",
"R-RNO-8943279",
"R-MMU-8943279",
"R-SPO-8943279",
"R-ATH-8943279",
"R-OSA-8943279",
"R-TGU-8943279",
"R-HSA-8943279",
"R-XTR-8943279",
"R-SSC-8943279",
"R-CFA-8943279",
"R-GGA-8943279",
"R-DME-8943279",
"R-BTA-8943279",
"R-DRE-8943279",
"R-SCE-8943279"
],
"rhea":[
"28809",
"28808",
"28807",
"28810"
],
"sabiork":[
"926"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00350"
]
}
},
{
"id":"GNK",
"name":"Gluconokinase",
"metabolites":{
"6pgc_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"glcn_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4485 or STM3542",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GNK"
]
},
"annotation":{
"bigg.reaction":[
"GNK"
],
"biocyc":[
"META:GLUCONOKIN-RXN"
],
"ec-code":[
"2.7.1.12"
],
"kegg.reaction":[
"R01737"
],
"metanetx.reaction":[
"MNXR100390"
],
"rhea":[
"19434",
"19436",
"19433",
"19435"
],
"sabiork":[
"1845"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01275"
]
}
},
{
"id":"GOFUCR",
"name":"GDP-4-oxo-L-fucose reductase",
"metabolites":{
"gdpfuc_c":1.0,
"gdpofuc_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2108",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"GOFUCR"
]
},
"annotation":{
"bigg.reaction":[
"GOFUCR"
],
"ec-code":[
"1.1.1.271"
],
"metanetx.reaction":[
"MNXR100393"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08666"
]
}
},
{
"id":"GTHRDabc2pp",
"name":"Glutathione export via ABC system (cytoplasm to periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gthrd_c":-1.0,
"gthrd_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0956 and STM0957",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GTHRDabc2pp"
]
},
"annotation":{
"bigg.reaction":[
"GTHRDabc2pp"
],
"biocyc":[
"META:RXN0-21"
],
"metanetx.reaction":[
"MNXR100447"
],
"rhea":[
"29788#1",
"29791#2",
"29790#1",
"29789#1",
"29787#1",
"29792#2",
"29794#2",
"29793#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13712",
"rxn08675"
]
}
},
{
"id":"GPDDA1",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphocholine)",
"metabolites":{
"chol_c":1.0,
"g3pc_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3553",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA1"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA1"
],
"biocyc":[
"META:3.1.4.2-RXN"
],
"ec-code":[
"3.1.4.46",
"3.1.4.2"
],
"kegg.reaction":[
"R01030"
],
"metanetx.reaction":[
"MNXR100410"
],
"reactome.reaction":[
"R-MMU-6814137",
"R-HSA-1483116",
"R-HSA-6814132",
"R-MMU-1483112"
],
"rhea":[
"16061",
"16063",
"16062",
"16064"
],
"sabiork":[
"1318"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00758"
]
}
},
{
"id":"EX_isetac_e",
"name":"Isethionic acid exchange",
"metabolites":{
"isetac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_isetac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_isetac_e"
],
"metanetx.reaction":[
"MNXR100881"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08759"
]
}
},
{
"id":"GPDDA1pp",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphocholine)",
"metabolites":{
"chol_p":1.0,
"g3pc_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2282",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA1pp"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA1pp"
],
"biocyc":[
"META:3.1.4.2-RXN"
],
"ec-code":[
"3.1.4.46",
"3.1.4.2"
],
"kegg.reaction":[
"R01030"
],
"metanetx.reaction":[
"MNXR100410"
],
"reactome.reaction":[
"R-MMU-6814137",
"R-HSA-1483116",
"R-HSA-6814132",
"R-MMU-1483112"
],
"rhea":[
"16061",
"16063",
"16062",
"16064"
],
"sabiork":[
"1318"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00758"
]
}
},
{
"id":"GPDDA2",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)",
"metabolites":{
"etha_c":1.0,
"g3pe_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3553",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA2"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA2"
],
"biocyc":[
"META:RXN-14160"
],
"ec-code":[
"3.1.4.46",
"3.1.4.2"
],
"kegg.reaction":[
"R01470"
],
"metanetx.reaction":[
"MNXR100411"
],
"rhea":[
"29320",
"29322",
"29321",
"29319"
],
"sabiork":[
"397"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01073"
]
}
},
{
"id":"GPDDA2pp",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphoethanolamine)",
"metabolites":{
"etha_p":1.0,
"g3pe_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2282",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA2pp"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA2pp"
],
"biocyc":[
"META:RXN-14160"
],
"ec-code":[
"3.1.4.46",
"3.1.4.2"
],
"kegg.reaction":[
"R01470"
],
"metanetx.reaction":[
"MNXR100411"
],
"rhea":[
"29320",
"29322",
"29321",
"29319"
],
"sabiork":[
"397"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01073"
]
}
},
{
"id":"GPDDA3",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphoserine)",
"metabolites":{
"g3ps_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ser__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3553",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA3"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA3"
],
"biocyc":[
"META:RXN-14136"
],
"ec-code":[
"3.1.4.46"
],
"metanetx.reaction":[
"MNXR100412"
],
"rhea":[
"29877",
"29875",
"29878",
"29876"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08668"
]
}
},
{
"id":"GPDDA3pp",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphoserine)",
"metabolites":{
"g3ps_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ser__L_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2282",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA3pp"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA3pp"
],
"biocyc":[
"META:RXN-14136"
],
"ec-code":[
"3.1.4.46"
],
"metanetx.reaction":[
"MNXR100412"
],
"rhea":[
"29877",
"29875",
"29878",
"29876"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08668"
]
}
},
{
"id":"GTHRDabcpp",
"name":"Reduced glutathione via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gthrd_c":1.0,
"gthrd_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0848 and STM0849 and STM0850 and STM0851",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GTHRDabcpp"
]
},
"annotation":{
"bigg.reaction":[
"GTHRDabcpp"
],
"biocyc":[
"META:RXN0-11"
],
"metanetx.reaction":[
"MNXR100448"
],
"rhea":[
"29788#2",
"29787#2",
"29792#1",
"29790#2",
"29793#1",
"29789#2",
"29794#1",
"29791#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08676",
"rxn13306"
]
}
},
{
"id":"GTHRDtex",
"name":"Glutathione transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gthrd_e":-1.0,
"gthrd_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GTHRDtex"
]
},
"annotation":{
"bigg.reaction":[
"GTHRDtex"
],
"metanetx.reaction":[
"MNXR100449"
],
"reactome.reaction":[
"R-HSA-1247915",
"R-HSA-1500817"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08677",
"rxn10829"
]
}
},
{
"id":"GTHS",
"name":"Glutathione synthetase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glucys_c":-1.0,
"gly_c":-1.0,
"gthrd_c":1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3095",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTHS"
]
},
"annotation":{
"bigg.reaction":[
"GTHS"
],
"biocyc":[
"META:GLUTATHIONE-SYN-RXN"
],
"ec-code":[
"6.3.2.3"
],
"kegg.reaction":[
"R00497"
],
"metanetx.reaction":[
"MNXR100450"
],
"reactome.reaction":[
"R-RNO-174394",
"R-DDI-174394",
"R-SSC-174394",
"R-SCE-174394",
"R-TGU-174394",
"R-PFA-174394",
"R-CFA-174394",
"R-DRE-174394",
"R-DME-174394",
"R-ATH-174394",
"R-GGA-174394",
"R-HSA-174394",
"R-CEL-174394",
"R-MMU-174394",
"R-OSA-174394",
"R-XTR-174394",
"R-SPO-174394",
"R-BTA-174394"
],
"rhea":[
"13558",
"13557",
"13560",
"13559"
],
"sabiork":[
"927"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00351"
]
}
},
{
"id":"GTPCI",
"name":"GTP cyclohydrolase I",
"metabolites":{
"ahdt_c":1.0,
"for_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2193",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTPCI"
]
},
"annotation":{
"bigg.reaction":[
"GTPCI"
],
"biocyc":[
"META:GTP-CYCLOHYDRO-I-RXN"
],
"ec-code":[
"3.5.4.16"
],
"kegg.reaction":[
"R00424"
],
"metanetx.reaction":[
"MNXR100453"
],
"reactome.reaction":[
"R-ATH-1474146",
"R-TGU-1474146",
"R-DRE-1474146",
"R-DDI-1474146",
"R-XTR-1474146",
"R-DME-1474146",
"R-MMU-1474146",
"R-CEL-1474146",
"R-PFA-1474146",
"R-RNO-1474146",
"R-HSA-1474146",
"R-BTA-1474146",
"R-SPO-1474146",
"R-GGA-1474146",
"R-OSA-1474146",
"R-CFA-1474146",
"R-SCE-1474146"
],
"rhea":[
"17476",
"17473",
"17474",
"17475"
],
"sabiork":[
"9177"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00299",
"rxn11232"
]
}
},
{
"id":"GTPCII2",
"name":"GTP cyclohydrolase II (25drapp)",
"metabolites":{
"25drapp_c":1.0,
"for_c":1.0,
"gtp_c":-1.0,
"h2o_c":-3.0,
"h_c":2.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1711",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTPCII2"
]
},
"annotation":{
"bigg.reaction":[
"GTPCII2"
],
"biocyc":[
"META:GTP-CYCLOHYDRO-II-RXN"
],
"ec-code":[
"3.5.4.25"
],
"kegg.reaction":[
"R00425"
],
"metanetx.reaction":[
"MNXR100455"
],
"rhea":[
"23707",
"23705",
"23706",
"23704"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GPDDA4",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol)",
"metabolites":{
"g3pg_c":-1.0,
"glyc3p_c":1.0,
"glyc_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3553",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA4"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA4"
],
"biocyc":[
"META:RXN-14073"
],
"ec-code":[
"3.1.4.46"
],
"metanetx.reaction":[
"MNXR100413"
],
"sabiork":[
"13035"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08669"
]
}
},
{
"id":"GPDDA4pp",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphoglycerol)",
"metabolites":{
"g3pg_p":-1.0,
"glyc3p_p":1.0,
"glyc_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2282",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA4pp"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA4pp"
],
"biocyc":[
"META:RXN-14073"
],
"ec-code":[
"3.1.4.46"
],
"metanetx.reaction":[
"MNXR100413"
],
"sabiork":[
"13035"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08669"
]
}
},
{
"id":"GTPDPDP",
"name":"Guanosine-5'-triphosphate,3'-diphosphate diphosphatase",
"metabolites":{
"gdptp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ppgpp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3913",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTPDPDP"
]
},
"annotation":{
"bigg.reaction":[
"GTPDPDP"
],
"biocyc":[
"META:PPPGPPHYDRO-RXN"
],
"ec-code":[
"3.6.1.40",
"3.6.1.11"
],
"kegg.reaction":[
"R03409"
],
"metanetx.reaction":[
"MNXR100099"
],
"rhea":[
"13074",
"13073",
"13075",
"13076"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02449"
]
}
},
{
"id":"EX_k_e",
"name":"K+ exchange",
"metabolites":{
"k_e":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_k_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_k_e"
],
"biocyc":[
"META:TRANS-RXN-190",
"META:TRANS-RXN-186",
"META:TRANS-RXN-185",
"META:TRANS-RXN-143",
"META:TRANS-RXN-187"
],
"metanetx.reaction":[
"MNXR100950"
],
"reactome.reaction":[
"R-CEL-1296046",
"R-CFA-1299297",
"R-DRE-1296127",
"R-CEL-1296035",
"R-GGA-1299318",
"R-XTR-1296046",
"R-RNO-5678261",
"R-ATH-1296043",
"R-MMU-877187",
"R-SSC-1296037",
"R-BTA-1299359",
"R-TGU-1296024",
"R-TGU-1296127",
"R-TGU-5678261",
"R-RNO-1296348",
"R-DME-5577234",
"R-RNO-1299297",
"R-HSA-5577050",
"R-DRE-1296037",
"R-DRE-1296024",
"R-XTR-5577050",
"R-MMU-1296348",
"R-RNO-5578910",
"R-DRE-5578910",
"R-RNO-1296024",
"R-CFA-1369017",
"R-TGU-1296348",
"R-RNO-2534365",
"R-GGA-1296045",
"R-CFA-5678261",
"R-XTR-1369017",
"R-DRE-1296043",
"R-GGA-1013020",
"R-HSA-5577234",
"R-CEL-1299338",
"R-CFA-1296043",
"R-BTA-1296127",
"R-HSA-5578910",
"R-BTA-1299338",
"R-BTA-1299318",
"R-RNO-5577237",
"R-HSA-1299359",
"R-CEL-1299318",
"R-HSA-1299318",
"R-DRE-1299304",
"R-MMU-1013020",
"R-XTR-1296039",
"R-TGU-1296045",
"R-BTA-1296045",
"R-XTR-1296037",
"R-SSC-5678261",
"R-MMU-1299297",
"R-DME-1296348",
"R-HSA-5683209",
"R-BTA-5578910",
"R-CFA-1296046",
"R-DME-1296035",
"R-CFA-1299359",
"R-HSA-1296043",
"R-DRE-1296039",
"R-GGA-1296348",
"R-XTR-1296043",
"R-SSC-2534365",
"R-XTR-5678261",
"R-CEL-1013020",
"R-GGA-1296127",
"R-MMU-1296039",
"R-HSA-1299304",
"R-BTA-1299304",
"R-DME-1296043",
"R-BTA-1296024",
"R-RNO-1296037",
"R-CFA-1296024",
"R-CFA-1013020",
"R-HSA-1296046",
"R-CFA-1296037",
"R-CEL-1299297",
"R-BTA-5577237",
"R-DME-1296039",
"R-TGU-1299359",
"R-CFA-1296127",
"R-HSA-1369017",
"R-RNO-1296046",
"R-XTR-1299338",
"R-DRE-5678261",
"R-XTR-5577234",
"R-HSA-1296024",
"R-RNO-1296045",
"R-GGA-5578910",
"R-DRE-1299338",
"R-GGA-1296046",
"R-RNO-1369017",
"R-CEL-1296045",
"R-DRE-5577050",
"R-DRE-1013020",
"R-BTA-1299297",
"R-SSC-1299338",
"R-SSC-1369017",
"R-GGA-5577050",
"R-CEL-1299359",
"R-BTA-5678261",
"R-BTA-1296043",
"R-RNO-1296127",
"R-OSA-1296043",
"R-CFA-5577050",
"R-CFA-5577234",
"R-SSC-1296045",
"R-MMU-1299304",
"R-MMU-1369017",
"R-SSC-1299304",
"R-MMU-1296035",
"R-HSA-1296035",
"R-TGU-1296037",
"R-GGA-1296039",
"R-SSC-5578910",
"R-GGA-1296024",
"R-CFA-1299304",
"R-GGA-5577234",
"R-RNO-1299338",
"R-DME-1296127",
"R-HSA-877187",
"R-DRE-1369017",
"R-HSA-1296348",
"R-BTA-1296348",
"R-MMU-1296043",
"R-RNO-1013020",
"R-MMU-1296127",
"R-RNO-5577050",
"R-CFA-1296045",
"R-BTA-1296039",
"R-RNO-5577234",
"R-TGU-1299338",
"R-RNO-1296039",
"R-TGU-1296039",
"R-XTR-1296127",
"R-SSC-1296039",
"R-DME-1296046",
"R-MMU-1299359",
"R-CEL-1296348",
"R-BTA-1296046",
"R-RNO-1299318",
"R-MMU-1299338",
"R-DRE-877187",
"R-MMU-5577050",
"R-BTA-1296037",
"R-RNO-1299359",
"R-GGA-1296043",
"R-DME-1013020",
"R-HSA-1299338",
"R-XTR-1296348",
"R-XTR-1299318",
"R-GGA-1299338",
"R-DRE-5577234",
"R-SSC-1296046",
"R-XTR-5578910",
"R-CFA-1296035",
"R-CFA-1296348",
"R-CFA-5577237",
"R-SSC-1296024",
"R-CEL-5577234",
"R-CFA-5578910",
"R-DRE-1296035",
"R-SSC-1296043",
"R-CFA-1299338",
"R-GGA-877187",
"R-HSA-5678261",
"R-CFA-2534365",
"R-HSA-1296127",
"R-HSA-1013020",
"R-BTA-5577234",
"R-DRE-1296348",
"R-MMU-1296024",
"R-BTA-1296035",
"R-DME-1299318",
"R-MMU-1296037",
"R-DRE-1296045",
"R-DRE-5577237",
"R-TGU-5577234",
"R-SSC-1299359",
"R-MMU-5578910",
"R-SSC-1013020",
"R-MMU-1296045",
"R-HSA-1296045",
"R-XTR-1296045",
"R-TGU-1299304",
"R-RNO-877187",
"R-MMU-2534365",
"R-CFA-877187",
"R-DRE-1296046",
"R-DRE-1299359",
"R-TGU-1296046",
"R-DME-1299338",
"R-TGU-5578910",
"R-RNO-1296035",
"R-SSC-1296348",
"R-XTR-1299359",
"R-MMU-5678261",
"R-SSC-1296127",
"R-BTA-1013020",
"R-CEL-5578910",
"R-GGA-1296037",
"R-GGA-5577237",
"R-XTR-1299304",
"R-GGA-5678261",
"R-SSC-1299297",
"R-MMU-1296046",
"R-TGU-5577050",
"R-DME-5578910",
"R-BTA-5577050",
"R-RNO-1299304",
"R-TGU-1013020",
"R-GGA-1299359",
"R-XTR-1013020",
"R-MMU-5577234",
"R-MMU-5577237",
"R-TGU-1369017",
"R-RNO-1296043",
"R-TGU-1296043",
"R-XTR-1296035",
"R-HSA-1296037",
"R-SSC-1296035",
"R-SSC-877187",
"R-CFA-1299318",
"R-DME-1296045",
"R-GGA-1296035",
"R-HSA-1299297",
"R-CFA-1296039",
"R-BTA-2534365",
"R-DME-1299359",
"R-BTA-877187",
"R-HSA-2534365",
"R-GGA-1369017",
"R-XTR-5577237",
"R-HSA-5577237",
"R-SSC-5577234",
"R-HSA-1296039",
"R-CEL-1296039",
"R-XTR-877187",
"R-SSC-5577237",
"R-DRE-1299318",
"R-GGA-1299304",
"R-BTA-1369017",
"R-MMU-1299318"
],
"rhea":[
"29463",
"29464",
"29466",
"29465"
],
"sabiork":[
"7044"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn05206",
"rxn08771"
]
}
},
{
"id":"GTPDPK",
"name":"GTP diphosphokinase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"gdptp_c":1.0,
"gtp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2956",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GTPDPK"
]
},
"annotation":{
"bigg.reaction":[
"GTPDPK"
],
"biocyc":[
"META:GTPPYPHOSKIN-RXN"
],
"ec-code":[
"2.7.6.5"
],
"kegg.reaction":[
"R00429"
],
"metanetx.reaction":[
"MNXR100457"
],
"rhea":[
"22091",
"22089",
"22088",
"22090"
],
"sabiork":[
"236"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00303"
]
}
},
{
"id":"GTPHs",
"name":"GTP amine hydrolysis (spontaneous)",
"metabolites":{
"gtp_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0,
"xtp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"GTPHs"
]
},
"annotation":{
"bigg.reaction":[
"GTPHs"
],
"metanetx.reaction":[
"MNXR100459"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08679"
]
}
},
{
"id":"GPDDA5",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol)",
"metabolites":{
"g3pi_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"inost_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3553",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA5"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA5"
],
"biocyc":[
"META:3.1.4.44-RXN"
],
"ec-code":[
"3.1.4.44"
],
"kegg.reaction":[
"R01193"
],
"metanetx.reaction":[
"MNXR100414"
],
"reactome.reaction":[
"R-CEL-6813740",
"R-HSA-6813740",
"R-TGU-6813740",
"R-DDI-6813740",
"R-RNO-6813740",
"R-SSC-6813740",
"R-CFA-6813740",
"R-GGA-6813740",
"R-MMU-6813740",
"R-DME-6813740",
"R-DRE-6813740",
"R-XTR-6813740",
"R-BTA-6813740"
],
"rhea":[
"16502",
"16501",
"16503",
"16504"
],
"sabiork":[
"1430"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00889"
]
}
},
{
"id":"GPDDA5pp",
"name":"Glycerophosphodiester phosphodiesterase (Glycerophosphoinositol)",
"metabolites":{
"g3pi_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"inost_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2282",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"GPDDA5pp"
]
},
"annotation":{
"bigg.reaction":[
"GPDDA5pp"
],
"biocyc":[
"META:3.1.4.44-RXN"
],
"ec-code":[
"3.1.4.44"
],
"kegg.reaction":[
"R01193"
],
"metanetx.reaction":[
"MNXR100414"
],
"reactome.reaction":[
"R-CEL-6813740",
"R-HSA-6813740",
"R-TGU-6813740",
"R-DDI-6813740",
"R-RNO-6813740",
"R-SSC-6813740",
"R-CFA-6813740",
"R-GGA-6813740",
"R-MMU-6813740",
"R-DME-6813740",
"R-DRE-6813740",
"R-XTR-6813740",
"R-BTA-6813740"
],
"rhea":[
"16502",
"16501",
"16503",
"16504"
],
"sabiork":[
"1430"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00889"
]
}
},
{
"id":"GRTT",
"name":"Geranyltranstransferase",
"metabolites":{
"frdp_c":1.0,
"grdp_c":-1.0,
"ipdp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0423",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"GRTT"
]
},
"annotation":{
"bigg.reaction":[
"GRTT"
],
"biocyc":[
"META:FPPSYN-RXN"
],
"ec-code":[
"2.5.1.10"
],
"kegg.reaction":[
"R02003"
],
"metanetx.reaction":[
"MNXR99634"
],
"reactome.reaction":[
"R-BTA-191303",
"R-CFA-191303",
"R-CEL-191303",
"R-ATH-191303",
"R-DME-191303",
"R-OSA-191303",
"R-RNO-191303",
"R-GGA-191303",
"R-SCE-191303",
"R-PFA-191303",
"R-SPO-191303",
"R-SSC-191303",
"R-TGU-191303",
"R-HSA-191303",
"R-XTR-191303",
"R-DDI-191303",
"R-DRE-191303",
"R-MMU-191303"
],
"rhea":[
"19361",
"19364",
"19362",
"19363"
],
"sabiork":[
"2041"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01466"
]
}
},
{
"id":"GRXR",
"name":"Glutaredoxin reductase",
"metabolites":{
"grxox_c":-1.0,
"grxrd_c":1.0,
"gthox_c":1.0,
"gthrd_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3702 or STM0872 or STM1433 or STM1165",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"GRXR"
]
},
"annotation":{
"bigg.reaction":[
"GRXR"
],
"ec-code":[
"1.8.4.2"
],
"metanetx.reaction":[
"MNXR100431"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08670"
]
}
},
{
"id":"GTPtex",
"name":"GTP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gtp_e":-1.0,
"gtp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GTPtex"
]
},
"annotation":{
"bigg.reaction":[
"GTPtex"
],
"metanetx.reaction":[
"MNXR100462"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08680",
"rxn12663"
]
}
},
{
"id":"GUAPRT",
"name":"Guanine phosphoribosyltransferase",
"metabolites":{
"gmp_c":1.0,
"gua_c":-1.0,
"ppi_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0317 or STM0170",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"GUAPRT"
]
},
"annotation":{
"bigg.reaction":[
"GUAPRT"
],
"biocyc":[
"META:GUANPRIBOSYLTRAN-RXN"
],
"ec-code":[
"2.4.2.8",
"2.4.2.7",
"2.4.2.22"
],
"kegg.reaction":[
"R01229"
],
"metanetx.reaction":[
"MNXR100409"
],
"rhea":[
"25427",
"25426",
"25424",
"25425"
],
"sabiork":[
"195"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00915"
]
}
},
{
"id":"GSNK",
"name":"Guanosine kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gmp_c":1.0,
"gsn_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0491",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"GSNK"
]
},
"annotation":{
"bigg.reaction":[
"GSNK"
],
"biocyc":[
"META:GUANOSINEKIN-RXN"
],
"ec-code":[
"2.7.1.73"
],
"kegg.reaction":[
"R01228"
],
"metanetx.reaction":[
"MNXR100432"
],
"rhea":[
"27711",
"27710",
"27712",
"27713"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00914"
]
}
},
{
"id":"EX_kdo2lipid4_e",
"name":"KDO(2)-lipid IV(A) exchange",
"metabolites":{
"kdo2lipid4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_kdo2lipid4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_kdo2lipid4_e"
],
"metanetx.reaction":[
"MNXR100901"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08761"
]
}
},
{
"id":"GSNt2pp",
"name":"Guanosine transport in via proton symport (periplasm)",
"metabolites":{
"gsn_c":1.0,
"gsn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GSNt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GSNt2pp"
],
"metanetx.reaction":[
"MNXR100434"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08671",
"rxn05204",
"rxn09747"
]
}
},
{
"id":"GSNtex",
"name":"Guanosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gsn_e":-1.0,
"gsn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"GSNtex"
]
},
"annotation":{
"bigg.reaction":[
"GSNtex"
],
"metanetx.reaction":[
"MNXR100433"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08672",
"rxn10897"
]
}
},
{
"id":"GSPMDA",
"name":"Glutathionylspermidine amidase",
"metabolites":{
"gthrd_c":1.0,
"gtspmd_c":-1.0,
"h2o_c":-1.0,
"spmd_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3139",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"GSPMDA"
]
},
"annotation":{
"bigg.reaction":[
"GSPMDA"
],
"biocyc":[
"META:GSPAMID-RXN"
],
"ec-code":[
"3.5.1.-",
"3.5.1.78"
],
"kegg.reaction":[
"R01918"
],
"metanetx.reaction":[
"MNXR100437"
],
"rhea":[
"17175",
"17173",
"17174",
"17176"
],
"sabiork":[
"1972"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01404"
]
}
},
{
"id":"GUAt2pp",
"name":"Guanine transport in via proton symport (periplasm)",
"metabolites":{
"gua_c":1.0,
"gua_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3747",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GUAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"GUAt2pp"
],
"metanetx.reaction":[
"MNXR100466"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08681",
"rxn05203"
]
}
},
{
"id":"GUAtex",
"name":"Guanine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"gua_e":-1.0,
"gua_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0413",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"GUAtex"
]
},
"annotation":{
"bigg.reaction":[
"GUAtex"
],
"biocyc":[
"META:TRANS-RXN0-578"
],
"metanetx.reaction":[
"MNXR100465"
],
"sabiork":[
"12299"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10142",
"rxn08683",
"rxn08682",
"rxn09746"
]
}
},
{
"id":"GSPMDS",
"name":"Glutathionylspermidine synthetase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gthrd_c":-1.0,
"gtspmd_c":1.0,
"h_c":1.0,
"pi_c":1.0,
"spmd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3139",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"GSPMDS"
]
},
"annotation":{
"bigg.reaction":[
"GSPMDS"
],
"biocyc":[
"META:GSPSYN-RXN"
],
"ec-code":[
"6.3.1.8",
"6.3.1.9"
],
"kegg.reaction":[
"R01917"
],
"metanetx.reaction":[
"MNXR100438"
],
"rhea":[
"21272",
"21273",
"21274",
"21275"
],
"sabiork":[
"1971"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01403"
]
}
},
{
"id":"GUAtpp",
"name":"Guanine transport via diffusion (periplasm)",
"metabolites":{
"gua_c":1.0,
"gua_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GUAtpp"
]
},
"annotation":{
"bigg.reaction":[
"GUAtpp"
],
"biocyc":[
"META:TRANS-RXN0-578"
],
"metanetx.reaction":[
"MNXR100465"
],
"sabiork":[
"12299"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10142",
"rxn08683",
"rxn08682",
"rxn09746"
]
}
},
{
"id":"EX_lac__D_e",
"name":"D-lactate exchange",
"metabolites":{
"lac__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lac_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lac__D_e"
],
"metanetx.reaction":[
"MNXR97840"
],
"sabiork":[
"12471"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08351"
]
}
},
{
"id":"GUR1PPpp",
"name":"Glucuronate 1-phosphate phosphatase (periplasm)",
"metabolites":{
"glcur1p_p":-1.0,
"glcur_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GUR1PPpp"
]
},
"annotation":{
"bigg.reaction":[
"GUR1PPpp"
],
"metanetx.reaction":[
"MNXR100480"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08684"
]
}
},
{
"id":"H2O2tex",
"name":"Hydrogen peroxide transport via diffusion (external)",
"metabolites":{
"h2o2_e":-1.0,
"h2o2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"H2O2tex"
]
},
"annotation":{
"bigg.reaction":[
"H2O2tex"
],
"biocyc":[
"META:TRANS-RXN-284",
"META:TRANS-RXN0-572"
],
"metanetx.reaction":[
"MNXR98640"
],
"reactome.reaction":[
"R-RNO-3779389",
"R-HSA-3779381"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13308",
"rxn08685"
]
}
},
{
"id":"H2Otex",
"name":"H2O transport via diffusion (extracellular to periplasm)",
"metabolites":{
"h2o_e":-1.0,
"h2o_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1473 or STM0999 or STM2267 or STM0320 or s0001 or STM4016",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"H2Otex"
]
},
"annotation":{
"bigg.reaction":[
"H2Otex"
],
"biocyc":[
"META:TRANS-RXN-145",
"META:TRANS-RXN0-547"
],
"metanetx.reaction":[
"MNXR98641"
],
"reactome.reaction":[
"R-ATH-507868",
"R-CFA-432054",
"R-CFA-432010",
"R-RNO-507868",
"R-OSA-432065",
"R-GGA-432010",
"R-SPO-445714",
"R-PFA-445714",
"R-CFA-432065",
"R-GGA-432067",
"R-TGU-432054",
"R-TGU-445714",
"R-OSA-507868",
"R-DRE-507868",
"R-SPO-507868",
"R-BTA-432054",
"R-GGA-507870",
"R-OSA-432010",
"R-DME-432065",
"R-DRE-432067",
"R-PFA-507868",
"R-SSC-432054",
"R-HSA-432065",
"R-OSA-507870",
"R-HSA-432054",
"R-SSC-432065",
"R-CEL-507868",
"R-XTR-507868",
"R-ATH-507870",
"R-SCE-432065",
"R-BTA-507870",
"R-DME-432010",
"R-CFA-445714",
"R-DRE-445714",
"R-BTA-507868",
"R-GGA-507868",
"R-RNO-432054",
"R-RNO-432010",
"R-SSC-432067",
"R-CEL-445714",
"R-DDI-432065",
"R-ATH-432010",
"R-SCE-432054",
"R-MMU-432065",
"R-MMU-445714",
"R-GGA-432065",
"R-HSA-432067",
"R-SSC-507870",
"R-SCE-432067",
"R-RNO-507870",
"R-DME-432054",
"R-ATH-432067",
"R-BTA-445714",
"R-DRE-507870",
"R-DME-507868",
"R-DME-507870",
"R-DRE-432010",
"R-MMU-432010",
"R-HSA-445714",
"R-OSA-432054",
"R-RNO-432067",
"R-TGU-432010",
"R-TGU-507868",
"R-DDI-432054",
"R-PFA-507870",
"R-HSA-507870",
"R-XTR-432067",
"R-HSA-432010",
"R-SSC-507868",
"R-SCE-507870",
"R-CEL-507870",
"R-DDI-507868",
"R-DRE-432054",
"R-XTR-507870",
"R-DDI-432010",
"R-BTA-432065",
"R-CFA-432067",
"R-OSA-432067",
"R-ATH-432065",
"R-GGA-445714",
"R-SCE-507868",
"R-TGU-432065",
"R-MMU-432067",
"R-TGU-507870",
"R-CFA-507870",
"R-RNO-432065",
"R-MMU-432054",
"R-MMU-507868",
"R-SPO-507870",
"R-SCE-432010",
"R-MMU-507870",
"R-SSC-445714",
"R-HSA-507868",
"R-DME-432067",
"R-SSC-432010",
"R-TGU-432067",
"R-GGA-432054",
"R-BTA-432010",
"R-SCE-445714",
"R-DDI-507870",
"R-ATH-432054",
"R-DDI-432067",
"R-XTR-445714",
"R-BTA-432067",
"R-CFA-507868",
"R-RNO-445714"
],
"rhea":[
"29668",
"29669",
"29667",
"29670"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08687",
"rxn08686",
"rxn09745",
"rxn09838",
"rxn09874",
"rxn09812",
"rxn09643",
"rxn05319"
]
}
},
{
"id":"H2Otpp",
"name":"H2O transport via diffusion (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h2o_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"H2Otpp"
]
},
"annotation":{
"bigg.reaction":[
"H2Otpp"
],
"biocyc":[
"META:TRANS-RXN-145",
"META:TRANS-RXN0-547"
],
"metanetx.reaction":[
"MNXR98641"
],
"reactome.reaction":[
"R-ATH-507868",
"R-CFA-432054",
"R-CFA-432010",
"R-RNO-507868",
"R-OSA-432065",
"R-GGA-432010",
"R-SPO-445714",
"R-PFA-445714",
"R-CFA-432065",
"R-GGA-432067",
"R-TGU-432054",
"R-TGU-445714",
"R-OSA-507868",
"R-DRE-507868",
"R-SPO-507868",
"R-BTA-432054",
"R-GGA-507870",
"R-OSA-432010",
"R-DME-432065",
"R-DRE-432067",
"R-PFA-507868",
"R-SSC-432054",
"R-HSA-432065",
"R-OSA-507870",
"R-HSA-432054",
"R-SSC-432065",
"R-CEL-507868",
"R-XTR-507868",
"R-ATH-507870",
"R-SCE-432065",
"R-BTA-507870",
"R-DME-432010",
"R-CFA-445714",
"R-DRE-445714",
"R-BTA-507868",
"R-GGA-507868",
"R-RNO-432054",
"R-RNO-432010",
"R-SSC-432067",
"R-CEL-445714",
"R-DDI-432065",
"R-ATH-432010",
"R-SCE-432054",
"R-MMU-432065",
"R-MMU-445714",
"R-GGA-432065",
"R-HSA-432067",
"R-SSC-507870",
"R-SCE-432067",
"R-RNO-507870",
"R-DME-432054",
"R-ATH-432067",
"R-BTA-445714",
"R-DRE-507870",
"R-DME-507868",
"R-DME-507870",
"R-DRE-432010",
"R-MMU-432010",
"R-HSA-445714",
"R-OSA-432054",
"R-RNO-432067",
"R-TGU-432010",
"R-TGU-507868",
"R-DDI-432054",
"R-PFA-507870",
"R-HSA-507870",
"R-XTR-432067",
"R-HSA-432010",
"R-SSC-507868",
"R-SCE-507870",
"R-CEL-507870",
"R-DDI-507868",
"R-DRE-432054",
"R-XTR-507870",
"R-DDI-432010",
"R-BTA-432065",
"R-CFA-432067",
"R-OSA-432067",
"R-ATH-432065",
"R-GGA-445714",
"R-SCE-507868",
"R-TGU-432065",
"R-MMU-432067",
"R-TGU-507870",
"R-CFA-507870",
"R-RNO-432065",
"R-MMU-432054",
"R-MMU-507868",
"R-SPO-507870",
"R-SCE-432010",
"R-MMU-507870",
"R-SSC-445714",
"R-HSA-507868",
"R-DME-432067",
"R-SSC-432010",
"R-TGU-432067",
"R-GGA-432054",
"R-BTA-432010",
"R-SCE-445714",
"R-DDI-507870",
"R-ATH-432054",
"R-DDI-432067",
"R-XTR-445714",
"R-BTA-432067",
"R-CFA-507868",
"R-RNO-445714"
],
"rhea":[
"29668",
"29669",
"29667",
"29670"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08687",
"rxn08686",
"rxn09745",
"rxn09838",
"rxn09874",
"rxn09812",
"rxn09643",
"rxn05319"
]
}
},
{
"id":"H2SO",
"name":"Hydrogen sulfide oxidation",
"metabolites":{
"h2s_c":-1.0,
"h_c":2.0,
"o2_c":-2.0,
"so4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"H2SO"
]
},
"annotation":{
"bigg.reaction":[
"H2SO"
],
"metanetx.reaction":[
"MNXR100493"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08688"
]
}
},
{
"id":"HMBS",
"name":"Hydroxymethylbilane synthase",
"metabolites":{
"h2o_c":-1.0,
"hmbil_c":1.0,
"nh4_c":4.0,
"ppbng_c":-4.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3938",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"HMBS"
]
},
"annotation":{
"bigg.reaction":[
"HMBS"
],
"biocyc":[
"META:OHMETHYLBILANESYN-RXN"
],
"ec-code":[
"2.5.1.61",
"4.3.1.8"
],
"kegg.reaction":[
"R00084"
],
"metanetx.reaction":[
"MNXR100658"
],
"reactome.reaction":[
"R-GGA-421439",
"R-XTR-189406",
"R-DRE-189406",
"R-BTA-189406",
"R-GGA-189406",
"R-MMU-189406",
"R-OSA-189406",
"R-PFA-189406",
"R-SSC-189406",
"R-SPO-189406",
"R-DDI-189406",
"R-DME-189406",
"R-SCE-189406",
"R-HSA-189406",
"R-RNO-189406",
"R-CFA-189406",
"R-ATH-189406",
"R-TGU-189406"
],
"rhea":[
"13187",
"13186",
"13185",
"13188"
],
"sabiork":[
"669"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00060"
]
}
},
{
"id":"H2St1pp",
"name":"H2s transport (periplasm)",
"metabolites":{
"h2s_c":-1.0,
"h2s_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"H2St1pp"
]
},
"annotation":{
"bigg.reaction":[
"H2St1pp"
],
"biocyc":[
"META:TRANS-RXN-310"
],
"metanetx.reaction":[
"MNXR100494"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08690",
"rxn08689",
"rxn10541"
]
}
},
{
"id":"EX_lac__L_e",
"name":"L-Lactate exchange",
"metabolites":{
"lac__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lac_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lac__L_e"
],
"metanetx.reaction":[
"MNXR100999"
],
"rhea":[
"34989",
"34988",
"34987",
"34990"
],
"sabiork":[
"10553"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn11016",
"rxn08795"
]
}
},
{
"id":"H2Stex",
"name":"H2s transport via diffusion (extracellular to periplasm)",
"metabolites":{
"h2s_e":-1.0,
"h2s_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"H2Stex"
]
},
"annotation":{
"bigg.reaction":[
"H2Stex"
],
"biocyc":[
"META:TRANS-RXN-310"
],
"metanetx.reaction":[
"MNXR100494"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08690",
"rxn08689",
"rxn10541"
]
}
},
{
"id":"HMPK1",
"name":"Hydroxymethylpyrimidine kinase (ATP)",
"metabolites":{
"4ahmmp_c":-1.0,
"4ampm_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2146 or STM2435",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"HMPK1"
]
},
"annotation":{
"bigg.reaction":[
"HMPK1"
],
"ec-code":[
"2.7.1.49"
],
"metanetx.reaction":[
"MNXR143164"
],
"sabiork":[
"3265"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02484"
]
}
},
{
"id":"H2tex",
"name":"Hydrogen transport via diffusion (extracellular to periplasm)",
"metabolites":{
"h2_e":-1.0,
"h2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"H2tex"
]
},
"annotation":{
"bigg.reaction":[
"H2tex"
],
"metanetx.reaction":[
"MNXR100495"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10542",
"rxn08691",
"rxn08692"
]
}
},
{
"id":"HOMt2pp",
"name":"L-homoserineserine efflux via proton symport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"hom__L_c":-1.0,
"hom__L_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0832 or STM3960",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"HOMt2pp"
]
},
"annotation":{
"bigg.reaction":[
"HOMt2pp"
],
"biocyc":[
"META:TRANS-RXN-242"
],
"metanetx.reaction":[
"MNXR100676"
],
"rhea":[
"29004",
"29003",
"29005",
"29006"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08722"
]
}
},
{
"id":"EX_lcts_e",
"name":"Lactose exchange",
"metabolites":{
"lcts_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lcts_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lcts_e"
],
"metanetx.reaction":[
"MNXR101027"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08780"
]
}
},
{
"id":"HOMtex",
"name":"L-homoserine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"hom__L_e":-1.0,
"hom__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"HOMtex"
]
},
"annotation":{
"bigg.reaction":[
"HOMtex"
],
"metanetx.reaction":[
"MNXR100678"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08723"
]
}
},
{
"id":"HPPK2",
"name":"6-hydroxymethyl-dihydropterin pyrophosphokinase",
"metabolites":{
"6hmhpt_c":-1.0,
"6hmhptpp_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0183",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"HPPK2"
]
},
"annotation":{
"bigg.reaction":[
"HPPK2"
],
"biocyc":[
"META:H2PTERIDINEPYROPHOSPHOKIN-RXN"
],
"ec-code":[
"2.7.6.3"
],
"kegg.reaction":[
"R03503"
],
"metanetx.reaction":[
"MNXR100694"
],
"rhea":[
"11413",
"11412",
"11415",
"11414"
],
"sbo":"SBO:0000176"
}
},
{
"id":"H2tpp",
"name":"Hydrogen transport diffusion (periplasm)",
"metabolites":{
"h2_c":1.0,
"h2_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"H2tpp"
]
},
"annotation":{
"bigg.reaction":[
"H2tpp"
],
"metanetx.reaction":[
"MNXR100495"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10542",
"rxn08691",
"rxn08692"
]
}
},
{
"id":"HACD1i",
"name":"3-hydroxyacyl-CoA dehydrogenase (acetoacetyl-CoA)",
"metabolites":{
"3hbcoa_c":-1.0,
"aacoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD1i"
]
},
"annotation":{
"bigg.reaction":[
"HACD1i"
],
"biocyc":[
"META:RXN-11662"
],
"ec-code":[
"1.1.1.35"
],
"kegg.reaction":[
"R01975"
],
"metanetx.reaction":[
"MNXR100541"
],
"reactome.reaction":[
"R-HSA-77312",
"R-MMU-77312",
"R-OSA-77312",
"R-XTR-77312",
"R-ATH-77312",
"R-CFA-77312",
"R-RNO-77312",
"R-BTA-77312",
"R-SSC-77312",
"R-DRE-77312",
"R-DDI-77312",
"R-TGU-77312",
"R-CEL-77312",
"R-GGA-77312"
],
"rhea":[
"30801",
"30802",
"30799",
"30800"
],
"sabiork":[
"2018"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01451"
]
}
},
{
"id":"EX_leu__L_e",
"name":"L-Leucine exchange",
"metabolites":{
"leu__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_leu_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_leu__L_e"
],
"biocyc":[
"META:RXN66-447"
],
"metanetx.reaction":[
"MNXR101057"
],
"sabiork":[
"13056"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08786",
"rxn11003"
]
}
},
{
"id":"HACD2i",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxohexanoyl-CoA)",
"metabolites":{
"3hhcoa_c":-1.0,
"3ohcoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD2i"
]
},
"annotation":{
"bigg.reaction":[
"HACD2i"
],
"biocyc":[
"META:RXN-12570"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04748"
],
"metanetx.reaction":[
"MNXR100543"
],
"reactome.reaction":[
"R-DDI-77323",
"R-ATH-77323",
"R-RNO-77323",
"R-DRE-77323",
"R-SSC-77323",
"R-BTA-77323",
"R-HSA-77323",
"R-MMU-77323",
"R-OSA-77323",
"R-TGU-77323",
"R-CEL-77323",
"R-GGA-77323",
"R-XTR-77323",
"R-CFA-77323"
],
"rhea":[
"31145",
"31144",
"31143",
"31146"
],
"sabiork":[
"4404"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03249"
]
}
},
{
"id":"HACD3i",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxooctanoyl-CoA)",
"metabolites":{
"3hocoa_c":-1.0,
"3oocoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2388 or STM3983",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD3i"
]
},
"annotation":{
"bigg.reaction":[
"HACD3i"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04745"
],
"metanetx.reaction":[
"MNXR100544"
],
"reactome.reaction":[
"R-BTA-77331",
"R-DDI-77331",
"R-CFA-77331",
"R-GGA-77331",
"R-HSA-77331",
"R-RNO-77331",
"R-MMU-77331",
"R-TGU-77331",
"R-CEL-77331",
"R-SSC-77331",
"R-OSA-77331",
"R-XTR-77331",
"R-ATH-77331",
"R-DRE-77331"
],
"rhea":[
"31196",
"31198",
"31197",
"31195"
],
"sabiork":[
"4401"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03246"
]
}
},
{
"id":"HPPPNtex",
"name":"3-(3-hydroxyphenyl)propionate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"3hpppn_e":-1.0,
"3hpppn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"HPPPNtex"
]
},
"annotation":{
"bigg.reaction":[
"HPPPNtex"
],
"metanetx.reaction":[
"MNXR100697"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08726"
]
}
},
{
"id":"HPYRI",
"name":"Hydroxypyruvate isomerase",
"metabolites":{
"2h3oppan_c":1.0,
"hpyr_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0518",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"HPYRI"
]
},
"annotation":{
"bigg.reaction":[
"HPYRI"
],
"biocyc":[
"META:RXN0-305"
],
"ec-code":[
"5.3.1.22"
],
"kegg.reaction":[
"R01394"
],
"metanetx.reaction":[
"MNXR100692"
],
"rhea":[
"11955",
"11954",
"11953",
"11952"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01015"
]
}
},
{
"id":"EX_lipa_cold_e",
"name":"Cold adapted KDO(2)-lipid (A) exchange",
"metabolites":{
"lipa_cold_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lipa_cold_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lipa_cold_e"
],
"metanetx.reaction":[
"MNXR96767"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08218"
]
}
},
{
"id":"HPYRRx",
"name":"Hydroxypyruvate reductase (NADH)",
"metabolites":{
"glyc__R_c":1.0,
"h_c":-1.0,
"hpyr_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1135 or STM3646",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"HPYRRx"
]
},
"annotation":{
"bigg.reaction":[
"HPYRRx"
],
"biocyc":[
"META:GLYCERATE-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.26",
"1.1.1.29",
"1.1.1.81"
],
"kegg.reaction":[
"R01388"
],
"metanetx.reaction":[
"MNXR100325"
],
"rhea":[
"17906",
"17907",
"17905",
"17908"
],
"sabiork":[
"9902",
"426"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01011"
]
}
},
{
"id":"HPYRRy",
"name":"Hydroxypyruvate reductase (NADPH)",
"metabolites":{
"glyc__R_c":1.0,
"h_c":-1.0,
"hpyr_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3646 or STM1135",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"HPYRRy"
]
},
"annotation":{
"bigg.reaction":[
"HPYRRy"
],
"biocyc":[
"META:RXN0-300"
],
"ec-code":[
"1.1.1.79",
"1.1.1",
"1.1.1.81"
],
"kegg.reaction":[
"R01392"
],
"metanetx.reaction":[
"MNXR100336"
],
"rhea":[
"18660",
"18659",
"18657",
"18658"
],
"sabiork":[
"427"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01013"
]
}
},
{
"id":"HACD4i",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxodecanoyl-CoA)",
"metabolites":{
"3hdcoa_c":-1.0,
"3odcoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD4i"
]
},
"annotation":{
"bigg.reaction":[
"HACD4i"
],
"biocyc":[
"META:RXN-12490"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04743"
],
"metanetx.reaction":[
"MNXR100545"
],
"reactome.reaction":[
"R-BTA-77342",
"R-OSA-77342",
"R-ATH-77342",
"R-MMU-77342",
"R-CEL-77342",
"R-XTR-77342",
"R-SSC-77342",
"R-TGU-77342",
"R-CFA-77342",
"R-DRE-77342",
"R-GGA-77342",
"R-RNO-77342",
"R-HSA-77342",
"R-DDI-77342"
],
"rhea":[
"31190",
"31187",
"31189",
"31188"
],
"sabiork":[
"4399"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03244"
]
}
},
{
"id":"EX_lipa_e",
"name":"KDO(2)-lipid (A) exchange",
"metabolites":{
"lipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lipa_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lipa_e"
],
"metanetx.reaction":[
"MNXR101084"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08791"
]
}
},
{
"id":"HACD5i",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxododecanoyl-CoA)",
"metabolites":{
"3hddcoa_c":-1.0,
"3oddcoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD5i"
]
},
"annotation":{
"bigg.reaction":[
"HACD5i"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04741"
],
"metanetx.reaction":[
"MNXR100546"
],
"reactome.reaction":[
"R-GGA-77254",
"R-TGU-77254",
"R-SSC-77254",
"R-HSA-77254",
"R-MMU-77254",
"R-RNO-77254",
"R-CFA-77254",
"R-OSA-77254",
"R-DDI-77254",
"R-DRE-77254",
"R-XTR-77254",
"R-ATH-77254",
"R-CEL-77254",
"R-BTA-77254"
],
"rhea":[
"31182",
"31181",
"31179",
"31180"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03242"
]
}
},
{
"id":"HACD6i",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxotetradecanoyl-CoA)",
"metabolites":{
"3htdcoa_c":-1.0,
"3otdcoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD6i"
]
},
"annotation":{
"bigg.reaction":[
"HACD6i"
],
"biocyc":[
"META:RXN-12507"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04739"
],
"metanetx.reaction":[
"MNXR100547"
],
"reactome.reaction":[
"R-DME-77283",
"R-BTA-77283",
"R-SSC-77283",
"R-TGU-77283",
"R-HSA-77283",
"R-GGA-77283",
"R-CEL-77283",
"R-CFA-77283",
"R-RNO-77283",
"R-MMU-77283",
"R-XTR-77283"
],
"rhea":[
"31169",
"31167",
"31170",
"31168"
],
"sabiork":[
"4395"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06777"
]
}
},
{
"id":"HSDy",
"name":"Homoserine dehydrogenase (NADPH)",
"metabolites":{
"aspsa_c":1.0,
"h_c":1.0,
"hom__L_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4101 or STM0002",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"HSDy"
]
},
"annotation":{
"bigg.reaction":[
"HSDy"
],
"ec-code":[
"1.1.1.3"
],
"kegg.reaction":[
"R01775"
],
"metanetx.reaction":[
"MNXR100734"
],
"rhea":[
"15761",
"15764",
"15763",
"15762"
],
"sabiork":[
"1868"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01302"
]
}
},
{
"id":"HSK",
"name":"Homoserine kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"hom__L_c":-1.0,
"phom_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0003",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"HSK"
]
},
"annotation":{
"bigg.reaction":[
"HSK"
],
"biocyc":[
"META:HOMOSERKIN-RXN"
],
"ec-code":[
"2.7.1.39"
],
"kegg.reaction":[
"R01771"
],
"metanetx.reaction":[
"MNXR100737"
],
"rhea":[
"13985",
"13987",
"13986",
"13988"
],
"sabiork":[
"1866"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01300"
]
}
},
{
"id":"HACD7i",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxohexadecanoyl-CoA)",
"metabolites":{
"3hhdcoa_c":-1.0,
"3ohdcoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD7i"
]
},
"annotation":{
"bigg.reaction":[
"HACD7i"
],
"biocyc":[
"META:RXN-14271"
],
"ec-code":[
"1.1.1.35",
"1.1.1.211"
],
"kegg.reaction":[
"R04737"
],
"metanetx.reaction":[
"MNXR100548"
],
"reactome.reaction":[
"R-TGU-77303",
"R-CEL-77303",
"R-BTA-77303",
"R-MMU-77303",
"R-RNO-77303",
"R-SSC-77303",
"R-CFA-77303",
"R-HSA-77303",
"R-XTR-77303",
"R-GGA-77303",
"R-DME-77303"
],
"rhea":[
"31161",
"31160",
"31162",
"31159"
],
"sabiork":[
"4393"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03239"
]
}
},
{
"id":"HSST",
"name":"Homoserine O-succinyltransferase",
"metabolites":{
"coa_c":1.0,
"hom__L_c":-1.0,
"succoa_c":-1.0,
"suchms_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4182",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"HSST"
]
},
"annotation":{
"bigg.reaction":[
"HSST"
],
"biocyc":[
"META:HOMSUCTRAN-RXN"
],
"ec-code":[
"2.3.1.46"
],
"kegg.reaction":[
"R01777"
],
"metanetx.reaction":[
"MNXR100741"
],
"rhea":[
"22010",
"22011",
"22009",
"22008"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01304"
]
}
},
{
"id":"EX_lys__L_e",
"name":"L-Lysine exchange",
"metabolites":{
"lys__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lys_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lys__L_e"
],
"biocyc":[
"META:TRANS-RXN0-569"
],
"metanetx.reaction":[
"MNXR101269"
],
"sabiork":[
"7984"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10834",
"rxn08856"
]
}
},
{
"id":"HSTPT",
"name":"Histidinol-phosphate transaminase",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"hisp_c":1.0,
"imacp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2073",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"HSTPT"
]
},
"annotation":{
"bigg.reaction":[
"HSTPT"
],
"biocyc":[
"META:HISTAMINOTRANS-RXN"
],
"ec-code":[
"2.6.1.9"
],
"kegg.reaction":[
"R03243"
],
"metanetx.reaction":[
"MNXR95852"
],
"rhea":[
"23747",
"23745",
"23744",
"23746"
],
"sabiork":[
"3064"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02320"
]
}
},
{
"id":"HXAtex",
"name":"Hexanoate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"hxa_e":-1.0,
"hxa_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"HXAtex"
]
},
"annotation":{
"bigg.reaction":[
"HXAtex"
],
"metanetx.reaction":[
"MNXR100750"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08732"
]
}
},
{
"id":"HXPRT",
"name":"Hypoxanthine phosphoribosyltransferase (Hypoxanthine)",
"metabolites":{
"hxan_c":-1.0,
"imp_c":1.0,
"ppi_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0317 or STM0170",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"HXPRT"
]
},
"annotation":{
"bigg.reaction":[
"HXPRT"
],
"biocyc":[
"META:HYPOXANPRIBOSYLTRAN-RXN"
],
"ec-code":[
"2.4.2.8"
],
"kegg.reaction":[
"R01132"
],
"metanetx.reaction":[
"MNXR100752"
],
"rhea":[
"17976",
"17974",
"17973",
"17975"
],
"sabiork":[
"81"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00836"
]
}
},
{
"id":"HYPOE",
"name":"Hypothetical enyme",
"metabolites":{
"h2o_c":-1.0,
"pi_c":1.0,
"pyam5p_c":-1.0,
"pydam_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"HYPOE"
]
},
"annotation":{
"bigg.reaction":[
"HYPOE"
],
"biocyc":[
"META:RXN-14046"
],
"ec-code":[
"3.1.3.74"
],
"kegg.reaction":[
"R02494"
],
"metanetx.reaction":[
"MNXR100763"
],
"rhea":[
"25135",
"25138",
"25137",
"25136"
],
"sabiork":[
"2424"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01808"
]
}
},
{
"id":"HYXNtex",
"name":"Hypoxanthine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"hxan_e":-1.0,
"hxan_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"HYXNtex"
]
},
"annotation":{
"bigg.reaction":[
"HYXNtex"
],
"biocyc":[
"META:TRANS-RXN0-579",
"META:TRANS-RXN0-562"
],
"metanetx.reaction":[
"MNXR100749"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10143",
"rxn08737",
"rxn08738"
]
}
},
{
"id":"HACD8i",
"name":"3-hydroxyacyl-CoA dehydrogenase (3-oxooctadecanoyl-CoA)",
"metabolites":{
"3hodcoa_c":-1.0,
"3ohodcoa_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983 or STM2388",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HACD8i"
]
},
"annotation":{
"bigg.reaction":[
"HACD8i"
],
"ec-code":[
"1.1.1.35"
],
"metanetx.reaction":[
"MNXR100549"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08700"
]
}
},
{
"id":"HBZOPT",
"name":"Hydroxybenzoate octaprenyltransferase",
"metabolites":{
"3ophb_c":1.0,
"4hbz_c":-1.0,
"octdp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4234",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"HBZOPT"
]
},
"annotation":{
"bigg.reaction":[
"HBZOPT"
],
"biocyc":[
"META:4OHBENZOATE-OCTAPRENYLTRANSFER-RXN"
],
"ec-code":[
"2.5.1.39"
],
"kegg.reaction":[
"R05615"
],
"metanetx.reaction":[
"MNXR100566"
],
"rhea":[
"27783",
"27785",
"27784",
"27782"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03893"
]
}
},
{
"id":"HCINNMtex",
"name":"3-hydroxycinnamic acid transport via diffusion (extracellular to periplasm)",
"metabolites":{
"3hcinnm_e":-1.0,
"3hcinnm_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"HCINNMtex"
]
},
"annotation":{
"bigg.reaction":[
"HCINNMtex"
],
"metanetx.reaction":[
"MNXR100571"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08702"
]
}
},
{
"id":"HCO3E",
"name":"HCO3 equilibration reaction",
"metabolites":{
"co2_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hco3_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0171",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"HCO3E"
]
},
"annotation":{
"bigg.reaction":[
"HCO3E"
],
"biocyc":[
"META:RXN0-5224",
"META:CARBODEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.1"
],
"kegg.reaction":[
"R10092",
"R00132"
],
"metanetx.reaction":[
"MNXR100482"
],
"reactome.reaction":[
"R-GGA-1237059",
"R-MMU-1237059",
"R-OSA-1237047",
"R-BTA-1237081",
"R-ATH-1475026",
"R-OSA-1475435",
"R-HSA-1237059",
"R-SSC-1475026",
"R-XTR-1475435",
"R-DME-1475435",
"R-DRE-1475436",
"R-DME-1237081",
"R-DME-1475017",
"R-DME-1475025",
"R-BTA-1475435",
"R-RNO-1475435",
"R-RNO-1237045",
"R-DRE-1237047",
"R-SSC-1237059",
"R-RNO-1475436",
"R-DRE-1475028",
"R-ATH-1475032",
"R-GGA-1237047",
"R-DRE-1475017",
"R-RNO-1237059",
"R-DME-1475032",
"R-MMU-1475025",
"R-XTR-1237081",
"R-DME-1475436",
"R-RNO-1475025",
"R-TGU-1475017",
"R-DME-1475028",
"R-GGA-1475032",
"R-RNO-1475028",
"R-OSA-1475028",
"R-DRE-1475435",
"R-GGA-1475022",
"R-MMU-1475435",
"R-TGU-1237081",
"R-HSA-1475028",
"R-GGA-1475028",
"R-MMU-1475032",
"R-OSA-1237081",
"R-SSC-1475436",
"R-ATH-1475435",
"R-ATH-1475436",
"R-ATH-1475017",
"R-DME-1237045",
"R-DRE-1475025",
"R-SSC-1475017",
"R-TGU-1475032",
"R-XTR-1475032",
"R-RNO-1475032",
"R-DME-1475026",
"R-GGA-1475025",
"R-HSA-1237047",
"R-TGU-1475026",
"R-ATH-1475028",
"R-XTR-1475028",
"R-RNO-1475022",
"R-GGA-1475436",
"R-CFA-1237047",
"R-DRE-1475026",
"R-CFA-1237081",
"R-CFA-1237045",
"R-OSA-1475032",
"R-DME-1475022",
"R-HSA-1475435",
"R-OSA-1237045",
"R-BTA-1237045",
"R-CEL-1237047",
"R-XTR-1475436",
"R-BTA-1237047",
"R-CEL-1475017",
"R-CFA-1475435",
"R-CEL-1237059",
"R-OSA-1475022",
"R-BTA-1237059",
"R-OSA-1475436",
"R-XTR-1475025",
"R-XTR-1475017",
"R-TGU-1475028",
"R-MMU-1237047",
"R-SSC-1475025",
"R-TGU-1475025",
"R-CFA-1475436",
"R-CEL-1237045",
"R-GGA-1475435",
"R-ATH-1475025",
"R-CEL-1237081",
"R-XTR-1475022",
"R-ATH-1237059",
"R-DRE-1475032",
"R-RNO-1475017",
"R-MMU-1475028",
"R-RNO-1475026",
"R-OSA-1475017",
"R-CFA-1475025",
"R-ATH-1475022",
"R-CFA-1475022",
"R-BTA-1475032",
"R-BTA-1475026",
"R-TGU-1237047",
"R-HSA-1237081",
"R-HSA-1475032",
"R-OSA-1475026",
"R-BTA-1475028",
"R-SSC-1237045",
"R-BTA-1475017",
"R-TGU-1237059",
"R-GGA-1475017",
"R-CFA-1475032",
"R-GGA-1475026",
"R-TGU-1475022",
"R-HSA-1475022",
"R-HSA-1237045",
"R-RNO-1237081",
"R-MMU-1475436",
"R-DRE-1237045",
"R-BTA-1475025",
"R-BTA-1475022",
"R-DME-1237059",
"R-XTR-1237047",
"R-CFA-1475026",
"R-SSC-1237047",
"R-SSC-1475028",
"R-XTR-1237059",
"R-TGU-1475435",
"R-ATH-1237047",
"R-CFA-1475028",
"R-MMU-1475022",
"R-CEL-1475025",
"R-DRE-1237059",
"R-HSA-1475025",
"R-OSA-1237059",
"R-DRE-1475022",
"R-OSA-1475025",
"R-DRE-1237081",
"R-MMU-1237045",
"R-XTR-1475026",
"R-CFA-1475017",
"R-HSA-1475436",
"R-HSA-1475026",
"R-MMU-1475017",
"R-MMU-1475026",
"R-RNO-1237047",
"R-BTA-1475436",
"R-TGU-1237045",
"R-SSC-1475022",
"R-ATH-1237045",
"R-SSC-1475032",
"R-MMU-1237081",
"R-DME-1237047",
"R-XTR-1237045",
"R-CFA-1237059",
"R-TGU-1475436",
"R-SSC-1237081",
"R-ATH-1237081",
"R-HSA-1475017",
"R-SSC-1475435"
],
"rhea":[
"10749",
"10748",
"10750",
"10751"
],
"sabiork":[
"703"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00102"
]
}
},
{
"id":"HDCAtexi",
"name":"Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"hdca_e":-1.0,
"hdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2391",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"HDCAtexi"
]
},
"annotation":{
"bigg.reaction":[
"HDCAtexi"
],
"metanetx.reaction":[
"MNXR99101"
],
"rhea":[
"45257",
"45256",
"45258",
"45259"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08704",
"rxn09848",
"rxn09676"
]
}
},
{
"id":"HYXNtpp",
"name":"Hypoxanthine transport (periplasm)",
"metabolites":{
"hxan_c":1.0,
"hxan_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"HYXNtpp"
]
},
"annotation":{
"bigg.reaction":[
"HYXNtpp"
],
"biocyc":[
"META:TRANS-RXN0-579",
"META:TRANS-RXN0-562"
],
"metanetx.reaction":[
"MNXR100749"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10143",
"rxn08737",
"rxn08738"
]
}
},
{
"id":"EX_lyx__L_e",
"name":"L-Lyxose exchange",
"metabolites":{
"lyx__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_lyx_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_lyx__L_e"
],
"metanetx.reaction":[
"MNXR101272"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08859"
]
}
},
{
"id":"Htex",
"name":"Proton transport via diffusion (extracellular to periplasm)",
"metabolites":{
"h_e":-1.0,
"h_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0999 or STM1473 or STM2267 or STM0320",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"Htex"
]
},
"annotation":{
"bigg.reaction":[
"Htex"
],
"biocyc":[
"META:RXN-14452"
],
"metanetx.reaction":[
"MNXR100765"
],
"reactome.reaction":[
"R-HSA-2534378",
"R-DDI-74723",
"R-BTA-170026",
"R-CFA-170026",
"R-SCE-74723",
"R-DRE-74723",
"R-HSA-170026",
"R-TGU-2534378",
"R-HSA-74723",
"R-CFA-2534378",
"R-TGU-74723",
"R-OSA-170026",
"R-RNO-2534378",
"R-GGA-2534378",
"R-MMU-2534378",
"R-BTA-2534378",
"R-SSC-2534378",
"R-DRE-170026",
"R-TGU-170026",
"R-GGA-170026",
"R-SCE-170026",
"R-DRE-2534378",
"R-BTA-74723",
"R-SPO-74723",
"R-XTR-74723",
"R-RNO-74723",
"R-XTR-2534378",
"R-MMU-74723",
"R-CFA-74723",
"R-GGA-74723",
"R-CEL-170026",
"R-MMU-170026",
"R-ATH-74723",
"R-DME-74723",
"R-PFA-74723",
"R-SSC-74723",
"R-XTR-170026",
"R-SSC-170026",
"R-CEL-74723",
"R-ATH-170026",
"R-RNO-170026",
"R-DME-170026"
],
"rhea":[
"34980",
"34981",
"34982",
"34979"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11009",
"rxn08730"
]
}
},
{
"id":"ICDHyr",
"name":"Isocitrate dehydrogenase (NADP)",
"metabolites":{
"akg_c":1.0,
"co2_c":1.0,
"icit_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1238",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"ICDHyr"
]
},
"annotation":{
"bigg.reaction":[
"ICDHyr"
],
"ec-code":[
"1.1.1.42"
],
"kegg.reaction":[
"R00267"
],
"metanetx.reaction":[
"MNXR100781"
],
"rhea":[
"19629",
"19630",
"19631",
"19632"
],
"sabiork":[
"269"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00198"
]
}
},
{
"id":"HDCEAtexi",
"name":"Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"hdcea_e":-1.0,
"hdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2391",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"HDCEAtexi"
]
},
"annotation":{
"bigg.reaction":[
"HDCEAtexi"
],
"metanetx.reaction":[
"MNXR99102"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_mal__D_e",
"name":"D-Malate exchange",
"metabolites":{
"mal__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mal_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mal__D_e"
],
"metanetx.reaction":[
"MNXR101341"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08864"
]
}
},
{
"id":"CTECOAI7",
"name":"3-cis-2-trans-enoyl-CoA isomerase",
"metabolites":{
"hdcoa_c":-1.0,
"hdd2coa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"HDCOAI"
]
},
"annotation":{
"bigg.reaction":[
"CTECOAI7"
],
"ec-code":[
"5.3.3.8"
],
"metanetx.reaction":[
"MNXR96941"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HEMEOS",
"name":"Heme O synthase",
"metabolites":{
"frdp_c":-1.0,
"h2o_c":-1.0,
"hemeO_c":1.0,
"pheme_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0439",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"HEMEOS"
]
},
"annotation":{
"bigg.reaction":[
"HEMEOS"
],
"ec-code":[
"2.5.1.-"
],
"kegg.reaction":[
"R07411"
],
"metanetx.reaction":[
"MNXR100596"
],
"reactome.reaction":[
"R-OSA-2995330",
"R-SPO-2995330",
"R-HSA-2995330",
"R-BTA-2995330",
"R-ATH-2995330",
"R-SSC-2995330",
"R-DDI-2995330",
"R-PFA-2995330",
"R-DRE-2995330",
"R-MMU-2995330",
"R-DME-2995330",
"R-RNO-2995330",
"R-TGU-2995330",
"R-SCE-2995330",
"R-XTR-2995330",
"R-CEL-2995330",
"R-GGA-2995330",
"R-CFA-2995330"
],
"rhea":[
"28073",
"28070",
"28071",
"28072"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ICHORS_copy1",
"name":"Isochorismate synthase",
"metabolites":{
"chor_c":-1.0,
"ichor_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2310",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ICHORS",
"ICHORSi"
]
},
"annotation":{
"bigg.reaction":[
"ICHORS"
],
"biocyc":[
"META:ISOCHORSYN-RXN"
],
"ec-code":[
"5.4.4.2"
],
"kegg.reaction":[
"R01717"
],
"metanetx.reaction":[
"MNXR100784"
],
"rhea":[
"18986",
"18985",
"18988",
"18987"
],
"sabiork":[
"1829"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01258"
]
}
},
{
"id":"ICHORS_copy2",
"name":"Isochorismate synthase",
"metabolites":{
"chor_c":-1.0,
"ichor_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0595 or STM2310",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ICHORS",
"ICHORSi"
]
},
"annotation":{
"bigg.reaction":[
"ICHORS"
],
"biocyc":[
"META:ISOCHORSYN-RXN"
],
"ec-code":[
"5.4.4.2"
],
"kegg.reaction":[
"R01717"
],
"metanetx.reaction":[
"MNXR100784"
],
"rhea":[
"18986",
"18985",
"18988",
"18987"
],
"sabiork":[
"1829"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01258"
]
}
},
{
"id":"HEPK1",
"name":"LPS heptose kinase I (LPS core synthesis)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"hhlipa_c":-1.0,
"phhlipa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3721",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"HEPK1"
]
},
"annotation":{
"bigg.reaction":[
"HEPK1"
],
"metanetx.reaction":[
"MNXR138511"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08708"
]
}
},
{
"id":"EX_mal__L_e",
"name":"L-Malate exchange",
"metabolites":{
"mal__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_mal_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_mal__L_e"
],
"biocyc":[
"META:TRANS-RXN-225",
"META:TRANS-RXN-224"
],
"metanetx.reaction":[
"MNXR101367"
],
"sabiork":[
"13793"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn10967",
"rxn08868"
]
}
},
{
"id":"HEPK2",
"name":"LPS heptose kinase II (LPS core synthesis)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"hphhlipa_c":-1.0,
"phphhlipa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3716",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"HEPK2"
]
},
"annotation":{
"bigg.reaction":[
"HEPK2"
],
"metanetx.reaction":[
"MNXR138512"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08709"
]
}
},
{
"id":"HEPT1",
"name":"Heptosyltransferase I (LPS core synthesis)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"h_c":1.0,
"hlipa_c":1.0,
"lipa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3712",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"HEPT1"
]
},
"annotation":{
"bigg.reaction":[
"HEPT1"
],
"ec-code":[
"2.4"
],
"metanetx.reaction":[
"MNXR100602"
],
"rhea":[
"28404",
"28405",
"28402",
"28403"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08710"
]
}
},
{
"id":"ICHORT",
"name":"Isochorismatase",
"metabolites":{
"23ddhb_c":1.0,
"h2o_c":-1.0,
"ichor_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0597",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ICHORT"
]
},
"annotation":{
"bigg.reaction":[
"ICHORT"
],
"biocyc":[
"META:ISOCHORMAT-RXN"
],
"ec-code":[
"3.3.2.1"
],
"kegg.reaction":[
"R03037"
],
"metanetx.reaction":[
"MNXR100785"
],
"rhea":[
"11112",
"11115",
"11114",
"11113"
],
"sabiork":[
"2886"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02177"
]
}
},
{
"id":"ICL",
"name":"Isocitrate lyase",
"metabolites":{
"glx_c":1.0,
"icit_c":-1.0,
"succ_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4184",
"subsystem":"Anaplerotic Reactions",
"notes":{
"original_bigg_ids":[
"ICL"
]
},
"annotation":{
"bigg.reaction":[
"ICL"
],
"ec-code":[
"4.1.3.1"
],
"kegg.reaction":[
"R00479"
],
"metanetx.reaction":[
"MNXR100789"
],
"rhea":[
"13248",
"13245",
"13246",
"13247"
],
"sabiork":[
"911"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00336"
]
}
},
{
"id":"HEPT2",
"name":"Heptosyltransferase II (LPS core synthesis)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"h_c":1.0,
"hhlipa_c":1.0,
"hlipa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3711",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"HEPT2"
]
},
"annotation":{
"bigg.reaction":[
"HEPT2"
],
"biocyc":[
"META:RXN0-5061"
],
"ec-code":[
"2"
],
"metanetx.reaction":[
"MNXR100604"
],
"rhea":[
"28539",
"28540",
"28541",
"28538"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08711"
]
}
},
{
"id":"IDOND",
"name":"L-idonate 5-dehydrogenase",
"metabolites":{
"5dglcn_c":-1.0,
"h_c":-1.0,
"idon__L_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4484",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"IDOND"
]
},
"annotation":{
"bigg.reaction":[
"IDOND"
],
"biocyc":[
"META:RXN-12107"
],
"ec-code":[
"1.1.1.264",
"1.1.1.366"
],
"kegg.reaction":[
"R05683"
],
"metanetx.reaction":[
"MNXR100801"
],
"rhea":[
"21175",
"21173",
"21174",
"21172"
],
"sabiork":[
"5279"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03953"
]
}
},
{
"id":"EX_malt_e",
"name":"Maltose exchange",
"metabolites":{
"malt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_malt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_malt_e"
],
"biocyc":[
"META:RXN-14351",
"META:TRANS-RXN0-575",
"META:RXN0-1741"
],
"metanetx.reaction":[
"MNXR101364"
],
"rhea":[
"33173",
"33172",
"33171",
"33174"
],
"sabiork":[
"11211"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08874"
]
}
},
{
"id":"IDOND2",
"name":"L-indonate 5-dehydrogenase (NADP)",
"metabolites":{
"5dglcn_c":-1.0,
"h_c":-1.0,
"idon__L_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4484",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"IDOND2"
]
},
"annotation":{
"bigg.reaction":[
"IDOND2"
],
"biocyc":[
"META:L-IDONATE-2-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.264"
],
"kegg.reaction":[
"R05684"
],
"metanetx.reaction":[
"MNXR100802"
],
"rhea":[
"21176",
"21179",
"21177",
"21178"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03954"
]
}
},
{
"id":"HEPT3",
"name":"Heptosyltransferase III (LPS core synthesis)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"h_c":1.0,
"hphhlipa_c":1.0,
"phhlipa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3723",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"HEPT3"
]
},
"annotation":{
"bigg.reaction":[
"HEPT3"
],
"metanetx.reaction":[
"MNXR100606"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08712"
]
}
},
{
"id":"HEPT4",
"name":"Heptosyltransferase IV (LPS core synthesis)",
"metabolites":{
"adp_c":1.0,
"adphep_LD_c":-1.0,
"colipa_c":1.0,
"gggagicolipa_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3714",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"HEPT4"
]
},
"annotation":{
"bigg.reaction":[
"HEPT4"
],
"ec-code":[
"2.4.1.56"
],
"metanetx.reaction":[
"MNXR100607"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08713"
]
}
},
{
"id":"IDONt2rpp",
"name":"L-idonate transport via proton symport, reversible (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"idon__L_c":1.0,
"idon__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4482",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"IDONt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"IDONt2rpp"
],
"biocyc":[
"META:TRANS-RXN-181A"
],
"ec-code":[
"3.6.3"
],
"metanetx.reaction":[
"MNXR100803"
],
"rhea":[
"29572",
"29573",
"29571",
"29574"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08742",
"rxn10167"
]
}
},
{
"id":"HETZK",
"name":"Hydroxyethylthiazole kinase",
"metabolites":{
"4mhetz_c":-1.0,
"4mpetz_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2147",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"HETZK"
]
},
"annotation":{
"bigg.reaction":[
"HETZK"
],
"biocyc":[
"META:THIAZOLSYN3-RXN"
],
"ec-code":[
"2.7.1.50"
],
"kegg.reaction":[
"R04448"
],
"metanetx.reaction":[
"MNXR100611"
],
"rhea":[
"24213",
"24215",
"24214",
"24212"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03075"
]
}
},
{
"id":"EX_malthx_e",
"name":"Maltohexaose exchange",
"metabolites":{
"malthx_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_malthx_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_malthx_e"
],
"metanetx.reaction":[
"MNXR101354"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08870"
]
}
},
{
"id":"HEX1",
"name":"Hexokinase (D-glucose:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"g6p_c":1.0,
"glc__D_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2403",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"HEX1"
]
},
"annotation":{
"bigg.reaction":[
"HEX1"
],
"biocyc":[
"META:GLUCOKIN-RXN"
],
"ec-code":[
"2.7.1.1",
"2.7.1.2"
],
"kegg.reaction":[
"R00299"
],
"metanetx.reaction":[
"MNXR100612"
],
"rhea":[
"17827",
"17828",
"17826",
"17825"
],
"sabiork":[
"9175",
"793",
"6915"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00216"
]
}
},
{
"id":"HEX4",
"name":"Hexokinase (D-mannose:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"man6p_c":1.0,
"man_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"HEX4"
]
},
"annotation":{
"bigg.reaction":[
"HEX4"
],
"biocyc":[
"META:MANNKIN-RXN"
],
"ec-code":[
"2.7.1.1",
"2.7.1.7"
],
"kegg.reaction":[
"R01326"
],
"metanetx.reaction":[
"MNXR95795"
],
"rhea":[
"11028",
"11030",
"11029",
"11031"
],
"sabiork":[
"575"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00975"
]
}
},
{
"id":"HEX7",
"name":"Hexokinase (D-fructose:ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"f6p_c":1.0,
"fru_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0393",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"HEX7"
]
},
"annotation":{
"bigg.reaction":[
"HEX7"
],
"ec-code":[
"2.7.1.1",
"2.7.1.4"
],
"kegg.reaction":[
"R00867"
],
"metanetx.reaction":[
"MNXR100614"
],
"sbo":"SBO:0000176"
}
},
{
"id":"IDONtex",
"name":"L-idonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"idon__L_e":-1.0,
"idon__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"IDONtex"
]
},
"annotation":{
"bigg.reaction":[
"IDONtex"
],
"metanetx.reaction":[
"MNXR100804"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08743"
]
}
},
{
"id":"IG3PS",
"name":"Imidazole-glycerol-3-phosphate synthase",
"metabolites":{
"aicar_c":1.0,
"eig3p_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h_c":1.0,
"prlp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2075 and STM2077",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"IG3PS"
]
},
"annotation":{
"bigg.reaction":[
"IG3PS"
],
"biocyc":[
"META:GLUTAMIDOTRANS-RXN"
],
"ec-code":[
"4.1.3.-",
"4.3.2.M2",
"2.4.2.-"
],
"kegg.reaction":[
"R04558"
],
"metanetx.reaction":[
"MNXR100811"
],
"rhea":[
"24796",
"24794",
"24793",
"24795"
],
"sabiork":[
"4234"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03135"
]
}
},
{
"id":"IGPDH",
"name":"Imidazoleglycerol-phosphate dehydratase",
"metabolites":{
"eig3p_c":-1.0,
"h2o_c":1.0,
"imacp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2074",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"IGPDH"
]
},
"annotation":{
"bigg.reaction":[
"IGPDH"
],
"biocyc":[
"META:IMIDPHOSDEHYD-RXN"
],
"ec-code":[
"4.2.1.19"
],
"kegg.reaction":[
"R03457"
],
"metanetx.reaction":[
"MNXR100813"
],
"rhea":[
"11041",
"11043",
"11040",
"11042"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02473"
]
}
},
{
"id":"IGPS",
"name":"Indole-3-glycerol-phosphate synthase",
"metabolites":{
"2cpr5p_c":-1.0,
"3ig3p_c":1.0,
"co2_c":1.0,
"h2o_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1725",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"IGPS"
]
},
"annotation":{
"bigg.reaction":[
"IGPS"
],
"biocyc":[
"META:IGPSYN-RXN"
],
"ec-code":[
"4.1.1.48"
],
"kegg.reaction":[
"R03508"
],
"metanetx.reaction":[
"MNXR100814"
],
"rhea":[
"23476",
"23479",
"23477",
"23478"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02507"
]
}
},
{
"id":"ILETA",
"name":"Isoleucine transaminase",
"metabolites":{
"3mop_c":1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"ile__L_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3903",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"ILETA"
]
},
"annotation":{
"bigg.reaction":[
"ILETA"
],
"biocyc":[
"META:BRANCHED-CHAINAMINOTRANSFERILEU-RXN"
],
"ec-code":[
"2.6.1.42"
],
"kegg.reaction":[
"R02199"
],
"metanetx.reaction":[
"MNXR96228"
],
"rhea":[
"24803",
"24802",
"24804",
"24801"
],
"sabiork":[
"9086"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01575"
]
}
},
{
"id":"ILETRS",
"name":"Isoleucyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ile__L_c":-1.0,
"iletrna_c":1.0,
"ppi_c":1.0,
"trnaile_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0046",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"ILETRS"
]
},
"annotation":{
"bigg.reaction":[
"ILETRS"
],
"ec-code":[
"6.1.1.5"
],
"kegg.reaction":[
"R03656"
],
"metanetx.reaction":[
"MNXR100820"
],
"reactome.reaction":[
"R-HSA-380176",
"R-HSA-379893"
],
"sabiork":[
"413"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06440"
]
}
},
{
"id":"HG2abcpp",
"name":"Mercury (Hg+2) ABC transporter (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hg2_c":-1.0,
"hg2_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3576",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"HG2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"HG2abcpp"
],
"metanetx.reaction":[
"MNXR100623"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10343",
"rxn08715"
]
}
},
{
"id":"HG2tex",
"name":"Mercury (Hg+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"hg2_e":-1.0,
"hg2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"HG2tex"
]
},
"annotation":{
"bigg.reaction":[
"HG2tex"
],
"metanetx.reaction":[
"MNXR100625"
],
"rhea":[
"32815",
"32817",
"32816",
"32818"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05586",
"rxn08717"
]
}
},
{
"id":"ILEabcpp",
"name":"L-isoleucine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ile__L_c":1.0,
"ile__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3560 and STM3561 and STM3563 and STM3567 and STM3562",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ILEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ILEabcpp"
],
"biocyc":[
"META:ABC-15-RXN"
],
"metanetx.reaction":[
"MNXR100821"
],
"rhea":[
"29820#1",
"29819#1",
"29821#1",
"29822#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08745",
"rxn05179"
]
}
},
{
"id":"HISTD",
"name":"Histidinol dehydrogenase",
"metabolites":{
"h2o_c":-1.0,
"h_c":3.0,
"his__L_c":1.0,
"histd_c":-1.0,
"nad_c":-2.0,
"nadh_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2072",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"HISTD"
]
},
"annotation":{
"bigg.reaction":[
"HISTD"
],
"biocyc":[
"META:RXN-8001"
],
"ec-code":[
"1.1.1.23"
],
"kegg.reaction":[
"R01158"
],
"metanetx.reaction":[
"MNXR100587"
],
"rhea":[
"20641",
"20642",
"20643",
"20644"
],
"sabiork":[
"1398"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00859"
]
}
},
{
"id":"EX_maltpt_e",
"name":"Maltopentaose exchange",
"metabolites":{
"maltpt_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_maltpt_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_maltpt_e"
],
"metanetx.reaction":[
"MNXR101356"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08873"
]
}
},
{
"id":"HISTP",
"name":"Histidinol-phosphatase",
"metabolites":{
"h2o_c":-1.0,
"hisp_c":-1.0,
"histd_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2074",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"HISTP"
]
},
"annotation":{
"bigg.reaction":[
"HISTP"
],
"biocyc":[
"META:HISTIDPHOS-RXN"
],
"ec-code":[
"3.1.3.15"
],
"kegg.reaction":[
"R03013"
],
"metanetx.reaction":[
"MNXR100642"
],
"rhea":[
"14466",
"14467",
"14468",
"14465"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02160"
]
}
},
{
"id":"HISTRS",
"name":"Histidyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"his__L_c":-1.0,
"histrna_c":1.0,
"ppi_c":1.0,
"trnahis_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2522",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"HISTRS"
]
},
"annotation":{
"bigg.reaction":[
"HISTRS"
],
"ec-code":[
"6.1.1.21"
],
"kegg.reaction":[
"R03655"
],
"metanetx.reaction":[
"MNXR100643"
],
"reactome.reaction":[
"R-HSA-380234",
"R-HSA-379844"
],
"sabiork":[
"410"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06439"
]
}
},
{
"id":"HISabcpp",
"name":"L-histidine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"his__L_c":1.0,
"his__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2354 and STM2352 and STM2351 and STM2353",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"HISabcpp"
]
},
"annotation":{
"bigg.reaction":[
"HISabcpp"
],
"biocyc":[
"META:ABC-14-RXN"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR100644"
],
"rhea":[
"29893#1",
"29894#1",
"29891#1",
"29892#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08718",
"rxn05164"
]
}
},
{
"id":"ILEt2rpp",
"name":"L-isoleucine reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ile__L_c":1.0,
"ile__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0399",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ILEt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"ILEt2rpp"
],
"metanetx.reaction":[
"MNXR100822"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13322",
"rxn05244",
"rxn08746"
]
}
},
{
"id":"ILEtex",
"name":"L-isoleucine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ile__L_e":-1.0,
"ile__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ILEtex"
]
},
"annotation":{
"bigg.reaction":[
"ILEtex"
],
"metanetx.reaction":[
"MNXR100824"
],
"sabiork":[
"13467"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08747",
"rxn13323",
"rxn10933"
]
}
},
{
"id":"IMPC",
"name":"IMP cyclohydrolase",
"metabolites":{
"fprica_c":1.0,
"h2o_c":-1.0,
"imp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4176",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"IMPC"
]
},
"annotation":{
"bigg.reaction":[
"IMPC"
],
"biocyc":[
"META:IMPCYCLOHYDROLASE-RXN"
],
"ec-code":[
"2.1.2.3",
"3.5.4.10"
],
"kegg.reaction":[
"R01127"
],
"metanetx.reaction":[
"MNXR100783"
],
"reactome.reaction":[
"R-SCE-73797",
"R-TGU-73797",
"R-GGA-419253",
"R-OSA-73797",
"R-GGA-73797",
"R-XTR-73797",
"R-RNO-73797",
"R-DDI-73797",
"R-SPO-73797",
"R-HSA-73797",
"R-BTA-73797",
"R-CFA-73797",
"R-MMU-73797",
"R-SSC-73797",
"R-ATH-73797",
"R-DME-73797",
"R-DRE-73797"
],
"rhea":[
"18446",
"18445",
"18447",
"18448"
],
"sabiork":[
"123"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00832"
]
}
},
{
"id":"IMPD",
"name":"IMP dehydrogenase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"imp_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"xmp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2511",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"IMPD"
]
},
"annotation":{
"bigg.reaction":[
"IMPD"
],
"biocyc":[
"META:IMP-DEHYDROG-RXN"
],
"ec-code":[
"1.1.1.205"
],
"kegg.reaction":[
"R01130"
],
"metanetx.reaction":[
"MNXR100830"
],
"reactome.reaction":[
"R-BTA-73794",
"R-GGA-421222",
"R-CFA-73794",
"R-GGA-73794",
"R-SCE-73794",
"R-XTR-73794",
"R-SPO-73794",
"R-DME-73794",
"R-TGU-73794",
"R-DRE-73794",
"R-PFA-73794",
"R-ATH-73794",
"R-MMU-73794",
"R-OSA-73794",
"R-RNO-73794",
"R-DDI-73794",
"R-HSA-73794",
"R-SSC-73794"
],
"rhea":[
"11711",
"11710",
"11708",
"11709"
],
"sabiork":[
"128"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00834"
]
}
},
{
"id":"HISt2rpp",
"name":"L-histidine reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"his__L_c":1.0,
"his__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0150",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"HISt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"HISt2rpp"
],
"metanetx.reaction":[
"MNXR100645"
],
"rhea":[
"37049",
"37050",
"37048",
"37047"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09744",
"rxn05299",
"rxn11327",
"rxn08719"
]
}
},
{
"id":"IMPtex",
"name":"IMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"imp_e":-1.0,
"imp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"IMPtex"
]
},
"annotation":{
"bigg.reaction":[
"IMPtex"
],
"biocyc":[
"META:TRANS-RXN0-566"
],
"metanetx.reaction":[
"MNXR100831"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08749"
]
}
},
{
"id":"EX_malttr_e",
"name":"Maltotriose exchange",
"metabolites":{
"malttr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_malttr_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_malttr_e"
],
"metanetx.reaction":[
"MNXR101359"
],
"sabiork":[
"11212"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08876"
]
}
},
{
"id":"INDOLEt2pp",
"name":"Indole transport via proton symport, irreversible (periplasm)",
"metabolites":{
"h_c":-1.0,
"h_p":1.0,
"indole_c":-1.0,
"indole_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3390 and STM3391",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"INDOLEt2pp"
]
},
"annotation":{
"bigg.reaction":[
"INDOLEt2pp"
],
"biocyc":[
"META:TRANS-RXN-142"
],
"metanetx.reaction":[
"MNXR100835"
],
"rhea":[
"29228",
"29227",
"29230",
"29229"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08750",
"rxn10176"
]
}
},
{
"id":"INDOLEt2rpp",
"name":"Indole transport via proton symport, reversible (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"indole_c":1.0,
"indole_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3279",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"INDOLEt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"INDOLEt2rpp"
],
"biocyc":[
"META:TRANS-RXN-142"
],
"metanetx.reaction":[
"MNXR100835"
],
"rhea":[
"29228",
"29227",
"29230",
"29229"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08750",
"rxn10176"
]
}
},
{
"id":"HIStex",
"name":"L-histidine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"his__L_e":-1.0,
"his__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"HIStex"
]
},
"annotation":{
"bigg.reaction":[
"HIStex"
],
"metanetx.reaction":[
"MNXR100649"
],
"sabiork":[
"13472"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08721",
"rxn10932"
]
}
},
{
"id":"EX_maltttr_e",
"name":"Maltotetraose exchange",
"metabolites":{
"maltttr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_maltttr_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_maltttr_e"
],
"metanetx.reaction":[
"MNXR101361"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08878"
]
}
},
{
"id":"MLDCP1Bpp",
"name":"Murein L,D-carboxypeptidase (murein4p4p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4p3p_p":1.0,
"murein4p4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP1Bpp"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP1Bpp"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143238"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08927"
]
}
},
{
"id":"INDOLEtex",
"name":"Indole transport via diffusion (extracellular to periplasm)",
"metabolites":{
"indole_e":-1.0,
"indole_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"INDOLEtex"
]
},
"annotation":{
"bigg.reaction":[
"INDOLEtex"
],
"biocyc":[
"META:TRANS-RXN0-563"
],
"metanetx.reaction":[
"MNXR100836"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08751"
]
}
},
{
"id":"INSH",
"name":"Inosine hydrolase",
"metabolites":{
"h2o_c":-1.0,
"hxan_c":1.0,
"ins_c":-1.0,
"rib__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0051",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"INSH"
]
},
"annotation":{
"bigg.reaction":[
"INSH"
],
"biocyc":[
"META:INOSINE-NUCLEOSIDASE-RXN"
],
"ec-code":[
"3.2.2.8",
"3.2.2.2",
"3.2.2.1"
],
"kegg.reaction":[
"R01770"
],
"metanetx.reaction":[
"MNXR100844"
],
"rhea":[
"16658",
"16657",
"16659",
"16660"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01299"
]
}
},
{
"id":"INSK",
"name":"Insosine kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"imp_c":1.0,
"ins_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0491",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"INSK"
]
},
"annotation":{
"bigg.reaction":[
"INSK"
],
"biocyc":[
"META:INOSINEKIN-RXN"
],
"ec-code":[
"2.7.1.73"
],
"kegg.reaction":[
"R01131"
],
"metanetx.reaction":[
"MNXR100845"
],
"rhea":[
"21142",
"21143",
"21141",
"21140"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00835"
]
}
},
{
"id":"INSTtex",
"name":"Inositol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"inost_e":-1.0,
"inost_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"INSTtex"
]
},
"annotation":{
"bigg.reaction":[
"INSTtex"
],
"metanetx.reaction":[
"MNXR100848"
],
"rhea":[
"32867",
"32869",
"32870",
"32868"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08755"
]
}
},
{
"id":"INSt2pp_copy1",
"name":"Inosine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ins_c":1.0,
"ins_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"INSt2pp",
"INSt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"INSt2pp"
],
"biocyc":[
"META:TRANS-RXN-108G"
],
"metanetx.reaction":[
"MNXR100850"
],
"rhea":[
"29965",
"29964",
"29966",
"29963"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05316",
"rxn08753"
]
}
},
{
"id":"INSt2pp_copy2",
"name":"Inosine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ins_c":1.0,
"ins_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2421",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"INSt2pp",
"INSt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"INSt2pp"
],
"biocyc":[
"META:TRANS-RXN-108G"
],
"metanetx.reaction":[
"MNXR100850"
],
"rhea":[
"29965",
"29964",
"29966",
"29963"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05316",
"rxn08753"
]
}
},
{
"id":"KAS14",
"name":"Beta-ketoacyl-ACP synthase",
"metabolites":{
"ACP_c":1.0,
"acACP_c":-1.0,
"actACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378 or STM1197",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAS14"
]
},
"annotation":{
"bigg.reaction":[
"KAS14"
],
"biocyc":[
"META:3-OXOACYL-ACP-SYNTH-BASE-RXN"
],
"ec-code":[
"2.3.1.180",
"2.3.1.85",
"2.3.1.86",
"2.3.1.179",
"2.3.1.-",
"2.3.1.41"
],
"kegg.reaction":[
"R04355"
],
"metanetx.reaction":[
"MNXR100912"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05347"
]
}
},
{
"id":"KAS15",
"name":"Beta-ketoacyl-ACP synthase (2)",
"metabolites":{
"accoa_c":-1.0,
"actACP_c":1.0,
"co2_c":1.0,
"coa_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1193",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAS15"
]
},
"annotation":{
"bigg.reaction":[
"KAS15"
],
"biocyc":[
"META:2.3.1.180-RXN"
],
"ec-code":[
"2.3.1.180"
],
"kegg.reaction":[
"R10707"
],
"metanetx.reaction":[
"MNXR100913"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08766"
]
}
},
{
"id":"INStex",
"name":"Inosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ins_e":-1.0,
"ins_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0413",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"INStex"
]
},
"annotation":{
"bigg.reaction":[
"INStex"
],
"metanetx.reaction":[
"MNXR100849"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08754"
]
}
},
{
"id":"EX_man6p_e",
"name":"D-Mannose 6-phosphate exchange",
"metabolites":{
"man6p_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_man6p_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_man6p_e"
],
"metanetx.reaction":[
"MNXR101385"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13644",
"rxn08880"
]
}
},
{
"id":"IPDDI",
"name":"Isopentenyl-diphosphate D-isomerase",
"metabolites":{
"dmpp_c":1.0,
"ipdp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3039",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"IPDDI"
]
},
"annotation":{
"bigg.reaction":[
"IPDDI"
],
"biocyc":[
"META:IPPISOM-RXN"
],
"ec-code":[
"5.3.3.2"
],
"kegg.reaction":[
"R01123"
],
"metanetx.reaction":[
"MNXR100796"
],
"reactome.reaction":[
"R-ATH-191382",
"R-SPO-191382",
"R-MMU-191382",
"R-CFA-191382",
"R-OSA-191382",
"R-RNO-191382",
"R-GGA-191382",
"R-DDI-191382",
"R-HSA-191382",
"R-CEL-191382",
"R-TGU-191382",
"R-XTR-191382",
"R-SSC-191382",
"R-DME-191382",
"R-BTA-191382",
"R-DRE-191382",
"R-SCE-191382"
],
"rhea":[
"23286",
"23287",
"23285",
"23284"
],
"sabiork":[
"1382"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00830"
]
}
},
{
"id":"IPDPS",
"name":"1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase (ipdp)",
"metabolites":{
"h2mb4p_c":-1.0,
"h2o_c":1.0,
"h_c":-1.0,
"ipdp_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0049",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"IPDPS"
]
},
"annotation":{
"bigg.reaction":[
"IPDPS"
],
"ec-code":[
"1.17.1.2"
],
"metanetx.reaction":[
"MNXR100874"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08756"
]
}
},
{
"id":"KAT1",
"name":"3-ketoacyl-CoA thiolase",
"metabolites":{
"aacoa_c":-1.0,
"accoa_c":2.0,
"coa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2389 or STM3982",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAT1"
]
},
"annotation":{
"bigg.reaction":[
"KAT1"
],
"biocyc":[
"META:ACETYL-COA-ACETYLTRANSFER-RXN"
],
"ec-code":[
"2.3.1.9"
],
"kegg.reaction":[
"R00238"
],
"metanetx.reaction":[
"MNXR95194"
],
"reactome.reaction":[
"R-CFA-74181",
"R-XTR-8848215",
"R-ATH-73916",
"R-RNO-74181",
"R-BTA-8848215",
"R-DDI-74181",
"R-SPO-74181",
"R-SSC-73916",
"R-CEL-74181",
"R-SPO-73916",
"R-DRE-74181",
"R-MMU-73916",
"R-TGU-74181",
"R-BTA-73916",
"R-DME-74181",
"R-PFA-73916",
"R-DME-73916",
"R-HSA-8848215",
"R-TGU-73916",
"R-SSC-8848215",
"R-OSA-73916",
"R-SSC-74181",
"R-BTA-74181",
"R-CFA-73916",
"R-GGA-74181",
"R-MMU-74181",
"R-PFA-74181",
"R-SCE-8848215",
"R-XTR-73916",
"R-GGA-8848215",
"R-HSA-74181",
"R-RNO-8848215",
"R-DRE-73916",
"R-SCE-74181",
"R-MMU-8848215",
"R-RNO-73916",
"R-HSA-73916",
"R-DME-8848215",
"R-ATH-74181",
"R-GGA-73916",
"R-CFA-8848215",
"R-DDI-73916",
"R-SCE-73916",
"R-OSA-74181",
"R-TGU-8848215",
"R-XTR-74181",
"R-DRE-8848215",
"R-CEL-73916"
],
"rhea":[
"21038",
"21037",
"21039",
"21036"
],
"sabiork":[
"531"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00178"
]
}
},
{
"id":"ACACT11",
"name":"3-ketoacyl-CoA thiolase",
"metabolites":{
"3ohcoa_c":-1.0,
"accoa_c":1.0,
"btcoa_c":1.0,
"coa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3982 or STM2389",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAT2"
]
},
"annotation":{
"bigg.reaction":[
"ACACT11"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACACT8",
"name":"3-ketoacyl-CoA thiolase",
"metabolites":{
"3oocoa_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"hxcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2389 or STM3982",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAT3"
]
},
"annotation":{
"bigg.reaction":[
"ACACT8"
],
"sbo":"SBO:0000176"
}
},
{
"id":"IPMD",
"name":"3-isopropylmalate dehydrogenase",
"metabolites":{
"3c2hmp_c":-1.0,
"3c4mop_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0112",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"IPMD"
]
},
"annotation":{
"bigg.reaction":[
"IPMD"
],
"biocyc":[
"META:3-ISOPROPYLMALDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.85"
],
"kegg.reaction":[
"R04426"
],
"metanetx.reaction":[
"MNXR100878"
],
"rhea":[
"10894",
"10893",
"10895",
"10892"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03062"
]
}
},
{
"id":"EX_man_e",
"name":"D-Mannose exchange",
"metabolites":{
"man_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_man_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_man_e"
],
"metanetx.reaction":[
"MNXR101402"
],
"sabiork":[
"11452"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn12997",
"rxn08886"
]
}
},
{
"id":"IPPMIa",
"name":"3-isopropylmalate dehydratase",
"metabolites":{
"2ippm_c":1.0,
"3c2hmp_c":-1.0,
"h2o_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0110 and STM0111) or (STM0329 and STM0330)",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"IPPMIa"
]
},
"annotation":{
"bigg.reaction":[
"IPPMIa"
],
"biocyc":[
"META:RXN-8991"
],
"ec-code":[
"4.2.1.33"
],
"kegg.reaction":[
"R04001"
],
"metanetx.reaction":[
"MNXR100827"
],
"rhea":[
"10679",
"10677",
"10678",
"10676"
],
"sabiork":[
"3736"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02811"
]
}
},
{
"id":"IPPMIb",
"name":"2-isopropylmalate hydratase",
"metabolites":{
"2ippm_c":-1.0,
"3c3hmp_c":1.0,
"h2o_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0110 and STM0111) or (STM0329 and STM0330)",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"IPPMIb"
]
},
"annotation":{
"bigg.reaction":[
"IPPMIb"
],
"biocyc":[
"META:3-ISOPROPYLMALISOM-RXN"
],
"ec-code":[
"4.2.1.33"
],
"kegg.reaction":[
"R03968"
],
"metanetx.reaction":[
"MNXR100826"
],
"rhea":[
"16293",
"16295",
"16296",
"16294"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02789"
]
}
},
{
"id":"ACACT13",
"name":"3-ketoacyl-CoA thiolase",
"metabolites":{
"3odcoa_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"occoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2389 or STM3982",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAT4"
]
},
"annotation":{
"bigg.reaction":[
"ACACT13"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACACT10",
"name":"3-ketoacyl-CoA thiolase",
"metabolites":{
"3oddcoa_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"dcacoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2389 or STM3982",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAT5"
]
},
"annotation":{
"bigg.reaction":[
"ACACT10"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACACT9",
"name":"3-ketoacyl-CoA thiolase",
"metabolites":{
"3otdcoa_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"ddcacoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3982 or STM2389",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAT6"
]
},
"annotation":{
"bigg.reaction":[
"ACACT9"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ACACT12",
"name":"3-ketoacyl-CoA thiolase",
"metabolites":{
"3ohdcoa_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"tdcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3982 or STM2389",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAT7"
]
},
"annotation":{
"bigg.reaction":[
"ACACT12"
],
"sbo":"SBO:0000176"
}
},
{
"id":"IPPS",
"name":"2-isopropylmalate synthase",
"metabolites":{
"3c3hmp_c":1.0,
"3mob_c":-1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0113",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"IPPS"
]
},
"annotation":{
"bigg.reaction":[
"IPPS"
],
"biocyc":[
"META:2-ISOPROPYLMALATESYN-RXN"
],
"ec-code":[
"2.3.3.13"
],
"kegg.reaction":[
"R01213"
],
"metanetx.reaction":[
"MNXR100879"
],
"rhea":[
"21527",
"21525",
"21524",
"21526"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00902"
]
}
},
{
"id":"EX_manglyc_e",
"name":"2(alpha-D-Mannosyl)-D-glycerate exchange",
"metabolites":{
"manglyc_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_manglyc_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_manglyc_e"
],
"metanetx.reaction":[
"MNXR101395"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn08883"
]
}
},
{
"id":"ISETACtex",
"name":"Isethionate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"isetac_e":-1.0,
"isetac_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ISETACtex"
]
},
"annotation":{
"bigg.reaction":[
"ISETACtex"
],
"metanetx.reaction":[
"MNXR100881"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08759"
]
}
},
{
"id":"ACACT8r",
"name":"Acetyl-CoA acyltransferase (hexadecanoyl-CoA), (r)",
"metabolites":{
"3ohodcoa_c":-1.0,
"accoa_c":1.0,
"coa_c":-1.0,
"pmtcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3982 or STM2389",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"KAT8"
]
},
"annotation":{
"bigg.reaction":[
"ACACT8r"
],
"metanetx.reaction":[
"MNXR95204"
],
"rhea":[
"35282",
"35280",
"35279",
"35281"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08767"
]
}
},
{
"id":"LPLIPAL2A161",
"name":"Lysophospholipase L2 (2-acylglycerophosphotidate, n-C16:1)",
"metabolites":{
"2hdec9eg3p_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"hdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2A161"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2A161"
],
"metanetx.reaction":[
"MNXR101166"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KDOCT2",
"name":"3-deoxy-manno-octulosonate cytidylyltransferase",
"metabolites":{
"ckdo_c":1.0,
"ctp_c":-1.0,
"kdo_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0988",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"KDOCT2"
]
},
"annotation":{
"bigg.reaction":[
"KDOCT2"
],
"biocyc":[
"META:CPM-KDOSYNTH-RXN"
],
"ec-code":[
"2.7.7.38"
],
"metanetx.reaction":[
"MNXR100932"
],
"rhea":[
"23449",
"23448",
"23451",
"23450"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KDOPP",
"name":"3-deoxy-manno-octulosonate-8-phosphatase",
"metabolites":{
"h2o_c":-1.0,
"kdo8p_c":-1.0,
"kdo_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3316",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"KDOPP"
]
},
"annotation":{
"bigg.reaction":[
"KDOPP"
],
"biocyc":[
"META:KDO-8PPHOSPHAT-RXN"
],
"ec-code":[
"3.1.3.45"
],
"metanetx.reaction":[
"MNXR141191"
],
"rhea":[
"11501",
"11503",
"11502",
"11500"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KDOPS",
"name":"3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase",
"metabolites":{
"ara5p_c":-1.0,
"h2o_c":-1.0,
"kdo8p_c":1.0,
"pep_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1772",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"KDOPS"
]
},
"annotation":{
"bigg.reaction":[
"KDOPS"
],
"ec-code":[
"2.5.1.55"
],
"kegg.reaction":[
"R03254"
],
"metanetx.reaction":[
"MNXR141202"
],
"rhea":[
"14054",
"14053",
"14055",
"14056"
],
"sabiork":[
"3075"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02331"
]
}
},
{
"id":"KG6PDC",
"name":"3-keto-L-gulonate 6-phosphate decarboxylase",
"metabolites":{
"3dhgulnp_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"xu5p__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4386 or STM3675",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"KG6PDC"
]
},
"annotation":{
"bigg.reaction":[
"KG6PDC"
],
"biocyc":[
"META:RXN0-705"
],
"ec-code":[
"4.1.1.85"
],
"kegg.reaction":[
"R07125"
],
"metanetx.reaction":[
"MNXR100935"
],
"rhea":[
"14353",
"14356",
"14354",
"14355"
],
"sabiork":[
"7628"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04928"
]
}
},
{
"id":"K2L4Aabcpp",
"name":"KDO(2)-lipid IV A transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"kdo2lipid4_c":-1.0,
"kdo2lipid4_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"K2L4Aabcpp"
]
},
"annotation":{
"bigg.reaction":[
"K2L4Aabcpp"
],
"metanetx.reaction":[
"MNXR100899"
],
"rhea":[
"35248#1",
"35249#1",
"35247#1",
"35250#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08760"
]
}
},
{
"id":"K2L4Atex",
"name":"KDO(2)-lipid IV A transport via vector (periplasm to extracellular)",
"metabolites":{
"kdo2lipid4_e":1.0,
"kdo2lipid4_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"K2L4Atex"
]
},
"annotation":{
"bigg.reaction":[
"K2L4Atex"
],
"metanetx.reaction":[
"MNXR100901"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08761"
]
}
},
{
"id":"KARA1",
"name":"Ketol-acid reductoisomerase (2,3-dihydroxy-3-methylbutanoate)",
"metabolites":{
"23dhmb_c":-1.0,
"alac__S_c":1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3909",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"KARA1"
]
},
"annotation":{
"bigg.reaction":[
"KARA1"
],
"biocyc":[
"META:ACETOLACTREDUCTOISOM-RXN"
],
"ec-code":[
"1.1.1.86",
"1.1.1.383"
],
"kegg.reaction":[
"R04439"
],
"metanetx.reaction":[
"MNXR97523"
],
"rhea":[
"22070",
"22068",
"22069",
"22071"
],
"sbo":"SBO:0000176"
}
},
{
"id":"KARA2",
"name":"Ketol-acid reductoisomerase (2-Acetolactate)",
"metabolites":{
"23dhmp_c":1.0,
"2ahbut_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3909",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"KARA2"
]
},
"annotation":{
"bigg.reaction":[
"KARA2"
],
"biocyc":[
"META:ACETOOHBUTREDUCTOISOM-RXN"
],
"ec-code":[
"1.1.1.86"
],
"metanetx.reaction":[
"MNXR100902"
],
"rhea":[
"13496",
"13494",
"13495",
"13493"
],
"sbo":"SBO:0000176"
}
},
{
"id":"Kabcpp",
"name":"Potassium ABC transporter (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"k_c":1.0,
"k_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0706 and STM0705 and STM0704",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"Kabcpp"
]
},
"annotation":{
"bigg.reaction":[
"Kabcpp"
],
"biocyc":[
"META:3.6.3.12-RXN",
"META:TRANS-RXN-2",
"META:3.6.3.10-RXN"
],
"ec-code":[
"3.6.3.10",
"3.6.3.12"
],
"metanetx.reaction":[
"MNXR100657"
],
"rhea":[
"16777#1",
"16778#1",
"16779#1",
"16780#1"
],
"sabiork":[
"9646#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08762",
"rxn10168",
"rxn10558"
]
}
},
{
"id":"Kt2pp",
"name":"Potassium transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"k_c":1.0,
"k_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3880 or (STM1695 and STM3409 and STM3986)",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"Kt2pp"
]
},
"annotation":{
"bigg.reaction":[
"Kt2pp"
],
"biocyc":[
"META:TRANS-RXN-3"
],
"metanetx.reaction":[
"MNXR100951"
],
"rhea":[
"28490",
"28493",
"28491",
"28492"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05595",
"rxn08769"
]
}
},
{
"id":"Kt3pp",
"name":"Potassium transport out via proton antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"k_c":-1.0,
"k_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3457 or STM0086 or STM1771 or STM0866",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"Kt3pp"
]
},
"annotation":{
"bigg.reaction":[
"Kt3pp"
],
"biocyc":[
"META:TRANS-RXN-42"
],
"metanetx.reaction":[
"MNXR100939"
],
"rhea":[
"29470",
"29467",
"29468",
"29469"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05596",
"rxn08770"
]
}
},
{
"id":"Ktex",
"name":"Potassium transport via diffusion (extracellular to periplasm)",
"metabolites":{
"k_e":-1.0,
"k_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"Ktex"
]
},
"annotation":{
"bigg.reaction":[
"Ktex"
],
"biocyc":[
"META:TRANS-RXN-190",
"META:TRANS-RXN-186",
"META:TRANS-RXN-185",
"META:TRANS-RXN-143",
"META:TRANS-RXN-187"
],
"metanetx.reaction":[
"MNXR100950"
],
"reactome.reaction":[
"R-CEL-1296046",
"R-CFA-1299297",
"R-DRE-1296127",
"R-CEL-1296035",
"R-GGA-1299318",
"R-XTR-1296046",
"R-RNO-5678261",
"R-ATH-1296043",
"R-MMU-877187",
"R-SSC-1296037",
"R-BTA-1299359",
"R-TGU-1296024",
"R-TGU-1296127",
"R-TGU-5678261",
"R-RNO-1296348",
"R-DME-5577234",
"R-RNO-1299297",
"R-HSA-5577050",
"R-DRE-1296037",
"R-DRE-1296024",
"R-XTR-5577050",
"R-MMU-1296348",
"R-RNO-5578910",
"R-DRE-5578910",
"R-RNO-1296024",
"R-CFA-1369017",
"R-TGU-1296348",
"R-RNO-2534365",
"R-GGA-1296045",
"R-CFA-5678261",
"R-XTR-1369017",
"R-DRE-1296043",
"R-GGA-1013020",
"R-HSA-5577234",
"R-CEL-1299338",
"R-CFA-1296043",
"R-BTA-1296127",
"R-HSA-5578910",
"R-BTA-1299338",
"R-BTA-1299318",
"R-RNO-5577237",
"R-HSA-1299359",
"R-CEL-1299318",
"R-HSA-1299318",
"R-DRE-1299304",
"R-MMU-1013020",
"R-XTR-1296039",
"R-TGU-1296045",
"R-BTA-1296045",
"R-XTR-1296037",
"R-SSC-5678261",
"R-MMU-1299297",
"R-DME-1296348",
"R-HSA-5683209",
"R-BTA-5578910",
"R-CFA-1296046",
"R-DME-1296035",
"R-CFA-1299359",
"R-HSA-1296043",
"R-DRE-1296039",
"R-GGA-1296348",
"R-XTR-1296043",
"R-SSC-2534365",
"R-XTR-5678261",
"R-CEL-1013020",
"R-GGA-1296127",
"R-MMU-1296039",
"R-HSA-1299304",
"R-BTA-1299304",
"R-DME-1296043",
"R-BTA-1296024",
"R-RNO-1296037",
"R-CFA-1296024",
"R-CFA-1013020",
"R-HSA-1296046",
"R-CFA-1296037",
"R-CEL-1299297",
"R-BTA-5577237",
"R-DME-1296039",
"R-TGU-1299359",
"R-CFA-1296127",
"R-HSA-1369017",
"R-RNO-1296046",
"R-XTR-1299338",
"R-DRE-5678261",
"R-XTR-5577234",
"R-HSA-1296024",
"R-RNO-1296045",
"R-GGA-5578910",
"R-DRE-1299338",
"R-GGA-1296046",
"R-RNO-1369017",
"R-CEL-1296045",
"R-DRE-5577050",
"R-DRE-1013020",
"R-BTA-1299297",
"R-SSC-1299338",
"R-SSC-1369017",
"R-GGA-5577050",
"R-CEL-1299359",
"R-BTA-5678261",
"R-BTA-1296043",
"R-RNO-1296127",
"R-OSA-1296043",
"R-CFA-5577050",
"R-CFA-5577234",
"R-SSC-1296045",
"R-MMU-1299304",
"R-MMU-1369017",
"R-SSC-1299304",
"R-MMU-1296035",
"R-HSA-1296035",
"R-TGU-1296037",
"R-GGA-1296039",
"R-SSC-5578910",
"R-GGA-1296024",
"R-CFA-1299304",
"R-GGA-5577234",
"R-RNO-1299338",
"R-DME-1296127",
"R-HSA-877187",
"R-DRE-1369017",
"R-HSA-1296348",
"R-BTA-1296348",
"R-MMU-1296043",
"R-RNO-1013020",
"R-MMU-1296127",
"R-RNO-5577050",
"R-CFA-1296045",
"R-BTA-1296039",
"R-RNO-5577234",
"R-TGU-1299338",
"R-RNO-1296039",
"R-TGU-1296039",
"R-XTR-1296127",
"R-SSC-1296039",
"R-DME-1296046",
"R-MMU-1299359",
"R-CEL-1296348",
"R-BTA-1296046",
"R-RNO-1299318",
"R-MMU-1299338",
"R-DRE-877187",
"R-MMU-5577050",
"R-BTA-1296037",
"R-RNO-1299359",
"R-GGA-1296043",
"R-DME-1013020",
"R-HSA-1299338",
"R-XTR-1296348",
"R-XTR-1299318",
"R-GGA-1299338",
"R-DRE-5577234",
"R-SSC-1296046",
"R-XTR-5578910",
"R-CFA-1296035",
"R-CFA-1296348",
"R-CFA-5577237",
"R-SSC-1296024",
"R-CEL-5577234",
"R-CFA-5578910",
"R-DRE-1296035",
"R-SSC-1296043",
"R-CFA-1299338",
"R-GGA-877187",
"R-HSA-5678261",
"R-CFA-2534365",
"R-HSA-1296127",
"R-HSA-1013020",
"R-BTA-5577234",
"R-DRE-1296348",
"R-MMU-1296024",
"R-BTA-1296035",
"R-DME-1299318",
"R-MMU-1296037",
"R-DRE-1296045",
"R-DRE-5577237",
"R-TGU-5577234",
"R-SSC-1299359",
"R-MMU-5578910",
"R-SSC-1013020",
"R-MMU-1296045",
"R-HSA-1296045",
"R-XTR-1296045",
"R-TGU-1299304",
"R-RNO-877187",
"R-MMU-2534365",
"R-CFA-877187",
"R-DRE-1296046",
"R-DRE-1299359",
"R-TGU-1296046",
"R-DME-1299338",
"R-TGU-5578910",
"R-RNO-1296035",
"R-SSC-1296348",
"R-XTR-1299359",
"R-MMU-5678261",
"R-SSC-1296127",
"R-BTA-1013020",
"R-CEL-5578910",
"R-GGA-1296037",
"R-GGA-5577237",
"R-XTR-1299304",
"R-GGA-5678261",
"R-SSC-1299297",
"R-MMU-1296046",
"R-TGU-5577050",
"R-DME-5578910",
"R-BTA-5577050",
"R-RNO-1299304",
"R-TGU-1013020",
"R-GGA-1299359",
"R-XTR-1013020",
"R-MMU-5577234",
"R-MMU-5577237",
"R-TGU-1369017",
"R-RNO-1296043",
"R-TGU-1296043",
"R-XTR-1296035",
"R-HSA-1296037",
"R-SSC-1296035",
"R-SSC-877187",
"R-CFA-1299318",
"R-DME-1296045",
"R-GGA-1296035",
"R-HSA-1299297",
"R-CFA-1296039",
"R-BTA-2534365",
"R-DME-1299359",
"R-BTA-877187",
"R-HSA-2534365",
"R-GGA-1369017",
"R-XTR-5577237",
"R-HSA-5577237",
"R-SSC-5577234",
"R-HSA-1296039",
"R-CEL-1296039",
"R-XTR-877187",
"R-SSC-5577237",
"R-DRE-1299318",
"R-GGA-1299304",
"R-BTA-1369017",
"R-MMU-1299318"
],
"rhea":[
"29463",
"29464",
"29466",
"29465"
],
"sabiork":[
"7044"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05206",
"rxn08771"
]
}
},
{
"id":"MALtex",
"name":"Malate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mal__L_e":-1.0,
"mal__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MALtex"
]
},
"annotation":{
"bigg.reaction":[
"MALtex"
],
"biocyc":[
"META:TRANS-RXN-225",
"META:TRANS-RXN-224"
],
"metanetx.reaction":[
"MNXR101367"
],
"sabiork":[
"13793"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10967",
"rxn08868"
]
}
},
{
"id":"LA4NTpp",
"name":"4-amino-4-deoxy-L-arabinotransferase (LPS lipid A modification, periplasmic face of membrane))",
"metabolites":{
"acolipa_p":1.0,
"colipa_p":-1.0,
"uLa4n_p":-1.0,
"udcpp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2301",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"LA4NTpp"
]
},
"annotation":{
"bigg.reaction":[
"LA4NTpp"
],
"metanetx.reaction":[
"MNXR100954"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08772"
]
}
},
{
"id":"MAN6PI",
"name":"Mannose-6-phosphate isomerase",
"metabolites":{
"f6p_c":1.0,
"man6p_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1467",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MAN6PI"
]
},
"annotation":{
"bigg.reaction":[
"MAN6PI"
],
"biocyc":[
"META:MANNPISOM-RXN"
],
"ec-code":[
"5.3.1.8"
],
"kegg.reaction":[
"R01819"
],
"metanetx.reaction":[
"MNXR101382"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL2A180",
"name":"Lysophospholipase L2 (2-acylglycerophosphotidate, n-C18:0)",
"metabolites":{
"2odecg3p_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"ocdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2A180"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2A180"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101167"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08822"
]
}
},
{
"id":"MAN6Pt6_2pp",
"name":"Mannose-6-phosphate transport via phosphate antiport (periplasm)",
"metabolites":{
"man6p_c":1.0,
"man6p_p":-1.0,
"pi_c":-2.0,
"pi_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3787",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MAN6Pt6_2pp"
]
},
"annotation":{
"bigg.reaction":[
"MAN6Pt6_2pp"
],
"metanetx.reaction":[
"MNXR101384"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10187",
"rxn08879"
]
}
},
{
"id":"MAN6Ptex",
"name":"Mannose 6-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"man6p_e":-1.0,
"man6p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MAN6Ptex"
]
},
"annotation":{
"bigg.reaction":[
"MAN6Ptex"
],
"metanetx.reaction":[
"MNXR101385"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13644",
"rxn08880"
]
}
},
{
"id":"LADGMDH",
"name":"L-alanyl-gamma-D-glutamyl-meso-diaminopimelate hydrolase",
"metabolites":{
"26dap__M_c":1.0,
"LalaDgluMdap_c":-1.0,
"LalaDglu_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1680",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"LADGMDH"
]
},
"annotation":{
"bigg.reaction":[
"LADGMDH"
],
"metanetx.reaction":[
"MNXR101002"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08773"
]
}
},
{
"id":"LALDO2x",
"name":"D-Lactaldehyde:NAD+ 1-oxidoreductase",
"metabolites":{
"h_c":-1.0,
"lald__D_c":1.0,
"mthgxl_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4108",
"subsystem":"Methylglyoxal Metabolism",
"notes":{
"original_bigg_ids":[
"LALDO2x"
]
},
"annotation":{
"bigg.reaction":[
"LALDO2x"
],
"biocyc":[
"META:D-LACTALDEHYDE-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.79",
"1.1.1.78"
],
"kegg.reaction":[
"R02527"
],
"metanetx.reaction":[
"MNXR101008"
],
"rhea":[
"24531",
"24529",
"24528",
"24530"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01831"
]
}
},
{
"id":"LALGP",
"name":"L-alanyl-gamma-L-glutamate peptidase",
"metabolites":{
"LalaLglu_c":-1.0,
"ala__L_c":1.0,
"glu__L_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0316",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"LALGP"
]
},
"annotation":{
"bigg.reaction":[
"LALGP"
],
"biocyc":[
"META:RXN0-6981"
],
"ec-code":[
"3.4.13.18"
],
"metanetx.reaction":[
"MNXR101011"
],
"rhea":[
"29336",
"29337",
"29335",
"29338"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08775"
]
}
},
{
"id":"MANGLYCtex",
"name":"2-O-alpha-mannosyl-D-glycerate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"manglyc_e":-1.0,
"manglyc_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MANGLYCtex"
]
},
"annotation":{
"bigg.reaction":[
"MANGLYCtex"
],
"metanetx.reaction":[
"MNXR101395"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08883"
]
}
},
{
"id":"LPLIPAL2A181",
"name":"Lysophospholipase L2 (2-acylglycerophosphotidate, n-C18:1)",
"metabolites":{
"2odec11eg3p_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"ocdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2A181"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2A181"
],
"metanetx.reaction":[
"MNXR101168"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MANptspp",
"name":"D-mannose transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"man6p_c":1.0,
"man_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1830 and STM1831 and STM1832 and STM2431 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MANptspp"
]
},
"annotation":{
"bigg.reaction":[
"MANptspp"
],
"metanetx.reaction":[
"MNXR101401"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05610",
"rxn08885"
]
}
},
{
"id":"MANtex",
"name":"D-mannose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"man_e":-1.0,
"man_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MANtex"
]
},
"annotation":{
"bigg.reaction":[
"MANtex"
],
"metanetx.reaction":[
"MNXR101402"
],
"sabiork":[
"11452"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12997",
"rxn08886"
]
}
},
{
"id":"LCARR",
"name":"Lacaldehyde reductase (R-propane-1,2-diol forming)",
"metabolites":{
"12ppd__R_c":1.0,
"h_c":-1.0,
"lald__D_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Methylglyoxal Metabolism",
"notes":{
"original_bigg_ids":[
"LCARR"
]
},
"annotation":{
"bigg.reaction":[
"LCARR"
],
"biocyc":[
"META:RXN-8641"
],
"ec-code":[
"1.1.1.77"
],
"kegg.reaction":[
"R03080"
],
"metanetx.reaction":[
"MNXR95713"
],
"rhea":[
"23872",
"23874",
"23875",
"23873"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02209"
]
}
},
{
"id":"LCARS",
"name":"Lacaldehyde reductase (S-propane-1,2-diol forming)",
"metabolites":{
"12ppd__S_c":1.0,
"h_c":-1.0,
"lald__L_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2973",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"LCARS"
]
},
"annotation":{
"bigg.reaction":[
"LCARS"
],
"biocyc":[
"META:LACTALDREDUCT-RXN"
],
"ec-code":[
"1.1.1.77"
],
"kegg.reaction":[
"R02258"
],
"metanetx.reaction":[
"MNXR95714"
],
"rhea":[
"15936",
"15935",
"15933",
"15934"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MCITD",
"name":"2-methylcitrate dehydratase",
"metabolites":{
"2mcacn_c":1.0,
"2mcit_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0370",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MCITD"
]
},
"annotation":{
"bigg.reaction":[
"MCITD"
],
"biocyc":[
"META:2-METHYLCITRATE-DEHYDRATASE-RXN"
],
"ec-code":[
"4.2.1.79"
],
"kegg.reaction":[
"R04424"
],
"metanetx.reaction":[
"MNXR101413"
],
"rhea":[
"17725",
"17728",
"17726",
"17727"
],
"sabiork":[
"4111"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03060"
]
}
},
{
"id":"LCTStex",
"name":"Lactose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"lcts_e":-1.0,
"lcts_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"LCTStex"
]
},
"annotation":{
"bigg.reaction":[
"LCTStex"
],
"metanetx.reaction":[
"MNXR101027"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08780"
]
}
},
{
"id":"MCITL2",
"name":"Methylisocitrate lyase",
"metabolites":{
"micit_c":-1.0,
"pyr_c":1.0,
"succ_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0368",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MCITL2"
]
},
"annotation":{
"bigg.reaction":[
"MCITL2"
],
"biocyc":[
"META:METHYLISOCITRATE-LYASE-RXN"
],
"ec-code":[
"4.1.3.30"
],
"kegg.reaction":[
"R00409"
],
"metanetx.reaction":[
"MNXR101415"
],
"rhea":[
"16812",
"16811",
"16810",
"16809"
],
"sabiork":[
"866"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00289"
]
}
},
{
"id":"LDH_D",
"name":"D-lactate dehydrogenase",
"metabolites":{
"h_c":1.0,
"lac__D_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pyr_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2167 or STM1647",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"LDH_D"
]
},
"annotation":{
"bigg.reaction":[
"LDH_D"
],
"biocyc":[
"META:DLACTDEHYDROGNAD-RXN"
],
"ec-code":[
"1.1.1.28"
],
"kegg.reaction":[
"R00704"
],
"metanetx.reaction":[
"MNXR101037"
],
"rhea":[
"16370",
"16371",
"16372",
"16369"
],
"sabiork":[
"155"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00500"
]
}
},
{
"id":"LPLIPAL2ATE120",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C12:0)",
"metabolites":{
"2agpe120_c":-1.0,
"apg120_c":1.0,
"g3pe_c":1.0,
"pg120_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATE120"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATE120"
],
"metanetx.reaction":[
"MNXR101169"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LDH_D2",
"name":"D-lactate dehydrogenase",
"metabolites":{
"lac__D_c":-1.0,
"pyr_c":1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2167",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"LDH_D2"
]
},
"annotation":{
"bigg.reaction":[
"LDH_D2"
],
"metanetx.reaction":[
"MNXR101039"
],
"rhea":[
"29081",
"29080",
"29082",
"29079"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08783"
]
}
},
{
"id":"MCITS",
"name":"2-methylcitrate synthase",
"metabolites":{
"2mcit_c":1.0,
"coa_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"oaa_c":-1.0,
"ppcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0369",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MCITS"
]
},
"annotation":{
"bigg.reaction":[
"MCITS"
],
"biocyc":[
"META:2-METHYLCITRATE-SYNTHASE-RXN"
],
"ec-code":[
"2.3.3.5"
],
"kegg.reaction":[
"R00931"
],
"metanetx.reaction":[
"MNXR101417"
],
"rhea":[
"23781",
"23780",
"23783",
"23782"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00679"
]
}
},
{
"id":"MCOATA",
"name":"Malonyl-CoA-ACP transacylase",
"metabolites":{
"ACP_c":-1.0,
"coa_c":1.0,
"malACP_c":1.0,
"malcoa_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1196 and STM1194",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"MCOATA"
]
},
"annotation":{
"bigg.reaction":[
"MCOATA"
],
"biocyc":[
"META:MALONYL-COA-ACP-TRANSACYL-RXN"
],
"ec-code":[
"2.3.1.85",
"2.3.1.86",
"2.3.1.0",
"2.3.1.39",
"2.3.1.-"
],
"kegg.reaction":[
"R01626"
],
"metanetx.reaction":[
"MNXR101421"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05465"
]
}
},
{
"id":"LEUTAi",
"name":"Leucine transaminase (irreversible)",
"metabolites":{
"4mop_c":-1.0,
"akg_c":1.0,
"glu__L_c":-1.0,
"leu__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3903 or STM4248",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"LEUTAi"
]
},
"annotation":{
"bigg.reaction":[
"LEUTAi"
],
"biocyc":[
"META:BRANCHED-CHAINAMINOTRANSFERLEU-RXN"
],
"ec-code":[
"2.6.1.42",
"2.6.1.6",
"2.6.1.67"
],
"kegg.reaction":[
"R01090"
],
"metanetx.reaction":[
"MNXR96229"
],
"rhea":[
"18323",
"18324",
"18321",
"18322"
],
"sabiork":[
"1352"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00806"
]
}
},
{
"id":"LPLIPAL2ATE140",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:0)",
"metabolites":{
"2agpe140_c":-1.0,
"apg140_c":1.0,
"g3pe_c":1.0,
"pg140_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATE140"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATE140"
],
"metanetx.reaction":[
"MNXR101170"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LEUTRS",
"name":"Leucyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"leu__L_c":-1.0,
"leutrna_c":1.0,
"ppi_c":1.0,
"trnaleu_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0648",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"LEUTRS"
]
},
"annotation":{
"bigg.reaction":[
"LEUTRS"
],
"ec-code":[
"6.1.1.4"
],
"kegg.reaction":[
"R03657"
],
"metanetx.reaction":[
"MNXR101053"
],
"reactome.reaction":[
"R-HSA-379974",
"R-HSA-380200"
],
"sabiork":[
"412"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06441"
]
}
},
{
"id":"LEUabcpp",
"name":"L-leucine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"leu__L_c":1.0,
"leu__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM3560 and STM3561 and STM3563 and STM3567 and STM3562) or (STM3560 and STM3561 and STM3563 and STM3564 and STM3562)",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"LEUabcpp"
]
},
"annotation":{
"bigg.reaction":[
"LEUabcpp"
],
"biocyc":[
"META:ABC-35-RXN"
],
"metanetx.reaction":[
"MNXR101054"
],
"rhea":[
"29810#1",
"29808#1",
"29809#1",
"29807#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05161",
"rxn08784"
]
}
},
{
"id":"LEUt2rpp",
"name":"L-leucine reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"leu__L_c":1.0,
"leu__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0399",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"LEUt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"LEUt2rpp"
],
"metanetx.reaction":[
"MNXR101055"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05243",
"rxn08785",
"rxn11119",
"rxn13340"
]
}
},
{
"id":"LEUtex",
"name":"L-leucine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"leu__L_e":-1.0,
"leu__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"LEUtex"
]
},
"annotation":{
"bigg.reaction":[
"LEUtex"
],
"biocyc":[
"META:RXN66-447"
],
"metanetx.reaction":[
"MNXR101057"
],
"sabiork":[
"13056"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08786",
"rxn11003"
]
}
},
{
"id":"MCPST",
"name":"3-mercaptopyruvate sulfurtransferase",
"metabolites":{
"cyan_c":-1.0,
"h_c":1.0,
"mercppyr_c":-1.0,
"pyr_c":1.0,
"tcynt_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2533",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"MCPST"
]
},
"annotation":{
"bigg.reaction":[
"MCPST"
],
"biocyc":[
"META:MERCAPYSTRANS-RXN"
],
"ec-code":[
"2.8.1.2"
],
"kegg.reaction":[
"R03106"
],
"metanetx.reaction":[
"MNXR138585"
],
"rhea":[
"21741",
"21740",
"21743",
"21742"
],
"sabiork":[
"2944"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02230"
]
}
},
{
"id":"MCTP1App",
"name":"Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"murein5p5p_p":-1.0,
"murein5px4p_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0122 or STM0640 or STM0190 or STM3493",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MCTP1App"
]
},
"annotation":{
"bigg.reaction":[
"MCTP1App"
],
"metanetx.reaction":[
"MNXR101426"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08887"
]
}
},
{
"id":"MCTP1Bpp",
"name":"Murein crosslinking transpeptidase 1B:(A2pm->A2pm) (periplasm)",
"metabolites":{
"alaala_p":1.0,
"murein5p5p_p":-1.0,
"murein5px3p_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0190 or STM3493",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MCTP1Bpp"
]
},
"annotation":{
"bigg.reaction":[
"MCTP1Bpp"
],
"metanetx.reaction":[
"MNXR143204"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08888"
]
}
},
{
"id":"MCTP2App",
"name":"Murein crosslinking transpeptidase 1A:(A2pm->D-ala) (periplasm)",
"metabolites":{
"ala__D_p":2.0,
"murein5p5p5p_p":-1.0,
"murein5px4px4p_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0122 or STM0640 or STM3493 or STM0190",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MCTP2App"
]
},
"annotation":{
"bigg.reaction":[
"MCTP2App"
],
"metanetx.reaction":[
"MNXR143205"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08889"
]
}
},
{
"id":"MDDCP1pp",
"name":"Murein D,D-carboxypeptidase (murein5px4p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4px4p_p":1.0,
"murein5px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0637 or STM3300 or STM0863 or STM2062",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP1pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP1pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR143206"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08890"
]
}
},
{
"id":"LGTHL",
"name":"Lactoylglutathione lyase",
"metabolites":{
"gthrd_c":-1.0,
"lgt__S_c":1.0,
"mthgxl_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1435 or STM0235",
"subsystem":"Methylglyoxal Metabolism",
"notes":{
"original_bigg_ids":[
"LGTHL"
]
},
"annotation":{
"bigg.reaction":[
"LGTHL"
],
"biocyc":[
"META:GLYOXI-RXN"
],
"ec-code":[
"4.4.1.5"
],
"kegg.reaction":[
"R02530"
],
"metanetx.reaction":[
"MNXR100355"
],
"reactome.reaction":[
"R-SPO-5694071",
"R-SCE-5694071",
"R-XTR-5694071",
"R-DRE-5694071",
"R-GGA-5694071",
"R-ATH-5694071",
"R-OSA-5694071",
"R-DME-5694071",
"R-MMU-5694071",
"R-TGU-5694071",
"R-CFA-5694071",
"R-HSA-5694071",
"R-RNO-5694071",
"R-SSC-5694071",
"R-BTA-5694071",
"R-DDI-5694071",
"R-PFA-5694071"
],
"rhea":[
"19071",
"19072",
"19069",
"19070"
],
"sabiork":[
"177"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01834"
]
}
},
{
"id":"LIPACabcpp",
"name":"Lipid (cold) A transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"lipa_cold_c":-1.0,
"lipa_cold_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"LIPACabcpp"
]
},
"annotation":{
"bigg.reaction":[
"LIPACabcpp"
],
"metanetx.reaction":[
"MNXR101077"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08788"
]
}
},
{
"id":"MDDCP2pp",
"name":"Murein D,D-carboxypeptidase (murein5px4px4p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4px4px4p_p":1.0,
"murein5px4px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0637 or STM3300 or STM0863 or STM2062",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP2pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP2pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR143207"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08891"
]
}
},
{
"id":"LPLIPAL2ATE141",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C14:1)",
"metabolites":{
"2agpe141_c":-1.0,
"apg141_c":1.0,
"g3pe_c":1.0,
"pg141_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATE141"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATE141"
],
"metanetx.reaction":[
"MNXR101171"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MDDCP3pp",
"name":"Murein D,D-carboxypeptidase (murein5p5p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein5p4p_p":1.0,
"murein5p5p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0637 or STM3300 or STM0863 or STM2062",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP3pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP3pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR101431"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08892"
]
}
},
{
"id":"MDDCP4pp",
"name":"Murein D,D-carboxypeptidase (murein5p4p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4p4p_p":1.0,
"murein5p4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0637 or STM3300 or STM0863 or STM2062",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP4pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP4pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR143208"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08893"
]
}
},
{
"id":"LIPAabcpp",
"name":"Lipid A transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"lipa_c":-1.0,
"lipa_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"LIPAabcpp"
]
},
"annotation":{
"bigg.reaction":[
"LIPAabcpp"
],
"metanetx.reaction":[
"MNXR101082"
],
"rhea":[
"35251#1",
"35254#1",
"35253#1",
"35252#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08787"
]
}
},
{
"id":"LIPAtex",
"name":"Lipid A transport via vector (periplasm to extracellular)",
"metabolites":{
"lipa_e":1.0,
"lipa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"LIPAtex"
]
},
"annotation":{
"bigg.reaction":[
"LIPAtex"
],
"metanetx.reaction":[
"MNXR101084"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08791"
]
}
},
{
"id":"LPADSS",
"name":"Lipid A disaccaride synthase",
"metabolites":{
"h_c":1.0,
"lipidAds_c":1.0,
"lipidX_c":-1.0,
"u23ga_c":-1.0,
"udp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0229",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"LPADSS"
]
},
"annotation":{
"bigg.reaction":[
"LPADSS"
],
"biocyc":[
"META:LIPIDADISACCHARIDESYNTH-RXN"
],
"ec-code":[
"2.4.1.182"
],
"kegg.reaction":[
"R04606"
],
"metanetx.reaction":[
"MNXR101119"
],
"rhea":[
"22668",
"22669",
"22671",
"22670"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03159"
]
}
},
{
"id":"MDDCP5pp",
"name":"Murein D,D-carboxypeptidase (murein5p3p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein4p3p_p":1.0,
"murein5p3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0637 or STM3300 or STM0863 or STM2062",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MDDCP5pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDCP5pp"
],
"ec-code":[
"3.4.16.4"
],
"metanetx.reaction":[
"MNXR143209"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08894"
]
}
},
{
"id":"LPLIPAL2ATE160",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:0)",
"metabolites":{
"2agpe160_c":-1.0,
"apg160_c":1.0,
"g3pe_c":1.0,
"pg160_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATE160"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATE160"
],
"metanetx.reaction":[
"MNXR101172"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MDDEP1pp",
"name":"Murein D,D-endopeptidase (murein4px4p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein4p4p_p":1.0,
"murein4px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3300 or STM2383 or STM2168",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MDDEP1pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDEP1pp"
],
"metanetx.reaction":[
"MNXR143210"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08895"
]
}
},
{
"id":"MDDEP2pp",
"name":"Murein D,D-endopeptidase (murein3px4p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein3px4p_p":-1.0,
"murein4p3p_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3300 or STM2383 or STM2168",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MDDEP2pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDEP2pp"
],
"metanetx.reaction":[
"MNXR101435"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08896"
]
}
},
{
"id":"LPLIPAL1A120pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphotidate, n-C12:0) (periplasm)",
"metabolites":{
"1ddecg3p_p":-1.0,
"ddca_p":1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1A120pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1A120pp"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101141"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1A140pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:0) (periplasm)",
"metabolites":{
"1tdecg3p_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1A140pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1A140pp"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101142"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1A141pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:1) (periplasm)",
"metabolites":{
"1tdec7eg3p_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1A141pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1A141pp"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101143"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1A160pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:0) (periplasm)",
"metabolites":{
"1hdecg3p_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1A160pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1A160pp"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101144"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08799"
]
}
},
{
"id":"MDDEP3pp",
"name":"Murein D,D-endopeptidase (murein5px4p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein5p4p_p":1.0,
"murein5px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3300 or STM2383 or STM2168",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MDDEP3pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDEP3pp"
],
"metanetx.reaction":[
"MNXR101436"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08897"
]
}
},
{
"id":"LPLIPAL2ATE161",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C16:1)",
"metabolites":{
"2agpe161_c":-1.0,
"apg161_c":1.0,
"g3pe_c":1.0,
"pg161_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATE161"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATE161"
],
"metanetx.reaction":[
"MNXR101173"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MDDEP4pp",
"name":"Murein D,D-endopeptidase (murein4px4px4p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein4px4p4p_p":1.0,
"murein4px4px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3300 or STM2383 or STM2168",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MDDEP4pp"
]
},
"annotation":{
"bigg.reaction":[
"MDDEP4pp"
],
"metanetx.reaction":[
"MNXR143211"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08898"
]
}
},
{
"id":"MDH",
"name":"Malate dehydrogenase",
"metabolites":{
"h_c":1.0,
"mal__L_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"oaa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3359",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"MDH"
]
},
"annotation":{
"bigg.reaction":[
"MDH"
],
"biocyc":[
"META:MALATE-DEH-RXN"
],
"ec-code":[
"1.1.1.37",
"1.1.1.299"
],
"kegg.reaction":[
"R00342"
],
"metanetx.reaction":[
"MNXR101439"
],
"reactome.reaction":[
"R-BTA-70979",
"R-BTA-198508",
"R-SCE-70979",
"R-GGA-70979",
"R-MMU-71783",
"R-RNO-71783",
"R-DDI-198508",
"R-CFA-71783",
"R-CFA-198508",
"R-ATH-70979",
"R-DME-198508",
"R-TGU-71783",
"R-HSA-71783",
"R-BTA-71783",
"R-DRE-198508",
"R-SPO-70979",
"R-GGA-71783",
"R-TGU-198508",
"R-GGA-372422",
"R-CEL-71783",
"R-XTR-70979",
"R-RNO-198508",
"R-MMU-70979",
"R-SPO-71783",
"R-ATH-71783",
"R-MMU-198508",
"R-DME-70979",
"R-TGU-70979",
"R-CEL-198508",
"R-DME-71783",
"R-DRE-70979",
"R-OSA-71783",
"R-SSC-198508",
"R-GGA-372855",
"R-SSC-70979",
"R-OSA-70979",
"R-GGA-373047",
"R-GGA-198508",
"R-SSC-71783",
"R-HSA-70979",
"R-CFA-70979",
"R-XTR-71783",
"R-HSA-198508",
"R-XTR-198508",
"R-SCE-71783",
"R-RNO-70979",
"R-DRE-71783",
"R-CEL-70979"
],
"rhea":[
"21432",
"21433",
"21434",
"21435"
],
"sabiork":[
"113"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00248"
]
}
},
{
"id":"MDRPD",
"name":"5-Methylthio-5-deoxy-D-ribulose 1-phosphate dehydratase",
"metabolites":{
"5mdru1p_c":-1.0,
"dkmpp_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"MDRPD"
]
},
"annotation":{
"bigg.reaction":[
"MDRPD"
],
"biocyc":[
"META:R145-RXN"
],
"ec-code":[
"4.2.1.109"
],
"kegg.reaction":[
"R07392"
],
"metanetx.reaction":[
"MNXR125830"
],
"reactome.reaction":[
"R-HSA-1237140",
"R-SCE-1237121"
],
"rhea":[
"15550",
"15549",
"15551",
"15552"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05104"
]
}
},
{
"id":"ME1",
"name":"Malic enzyme (NAD)",
"metabolites":{
"co2_c":1.0,
"mal__L_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1566",
"subsystem":"Anaplerotic Reactions",
"notes":{
"original_bigg_ids":[
"ME1"
]
},
"annotation":{
"bigg.reaction":[
"ME1"
],
"biocyc":[
"META:1.1.1.39-RXN"
],
"ec-code":[
"1.1.1.38",
"1.1.1.39"
],
"kegg.reaction":[
"R00214"
],
"metanetx.reaction":[
"MNXR101446"
],
"rhea":[
"12655",
"12654",
"12653",
"12656"
],
"sabiork":[
"141"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00159"
]
}
},
{
"id":"LPLIPAL1A161pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:1) (periplasm)",
"metabolites":{
"1hdec9eg3p_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1A161pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1A161pp"
],
"metanetx.reaction":[
"MNXR101145"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1A180pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:0) (periplasm)",
"metabolites":{
"1odecg3p_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1A180pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1A180pp"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101146"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08801"
]
}
},
{
"id":"LPLIPAL1A181pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:1) (periplasm)",
"metabolites":{
"1odec11eg3p_p":-1.0,
"glyc3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1A181pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1A181pp"
],
"metanetx.reaction":[
"MNXR101147"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1E120pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C12:0) (periplasm)",
"metabolites":{
"1agpe120_p":-1.0,
"ddca_p":1.0,
"g3pe_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1E120pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1E120pp"
],
"metanetx.reaction":[
"MNXR101148"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ME2",
"name":"Malic enzyme (NADP)",
"metabolites":{
"co2_c":1.0,
"mal__L_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2472",
"subsystem":"Anaplerotic Reactions",
"notes":{
"original_bigg_ids":[
"ME2"
]
},
"annotation":{
"bigg.reaction":[
"ME2"
],
"biocyc":[
"META:MALIC-NADP-RXN"
],
"ec-code":[
"1.1.1.40"
],
"kegg.reaction":[
"R00216"
],
"metanetx.reaction":[
"MNXR101443"
],
"rhea":[
"18255",
"18256",
"18254",
"18253"
],
"sabiork":[
"142"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00161"
]
}
},
{
"id":"LPLIPAL1E140pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:0) (periplasm)",
"metabolites":{
"1agpe140_p":-1.0,
"g3pe_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1E140pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1E140pp"
],
"metanetx.reaction":[
"MNXR101149"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL2ATE180",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:0)",
"metabolites":{
"2agpe180_c":-1.0,
"apg180_c":1.0,
"g3pe_c":1.0,
"pg180_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATE180"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATE180"
],
"metanetx.reaction":[
"MNXR101174"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1E141pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:1) (periplasm)",
"metabolites":{
"1agpe141_p":-1.0,
"g3pe_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1E141pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1E141pp"
],
"metanetx.reaction":[
"MNXR101150"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1E160pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:0) (periplasm)",
"metabolites":{
"1agpe160_p":-1.0,
"g3pe_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1E160pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1E160pp"
],
"metanetx.reaction":[
"MNXR101151"
],
"rhea":[
"40891",
"40893",
"40894",
"40892"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MECDPDH2",
"name":"2C-methyl-D-erythritol 2,4 cyclodiphosphate dehydratase",
"metabolites":{
"2mecdp_c":-1.0,
"h2mb4p_c":1.0,
"h2o_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2523",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"MECDPDH2"
]
},
"annotation":{
"bigg.reaction":[
"MECDPDH2"
],
"metanetx.reaction":[
"MNXR101448"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05293"
]
}
},
{
"id":"MECDPS",
"name":"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase",
"metabolites":{
"2mecdp_c":1.0,
"2p4c2me_c":-1.0,
"cmp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2929",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"MECDPS"
]
},
"annotation":{
"bigg.reaction":[
"MECDPS"
],
"biocyc":[
"META:RXN0-302"
],
"ec-code":[
"4.6.1.12"
],
"kegg.reaction":[
"R05637"
],
"metanetx.reaction":[
"MNXR101424"
],
"rhea":[
"23864",
"23867",
"23866",
"23865"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03910"
]
}
},
{
"id":"MELIBt2pp",
"name":"Melibiose transport in via symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"melib_c":1.0,
"melib_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4299",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MELIBt2pp"
]
},
"annotation":{
"bigg.reaction":[
"MELIBt2pp"
],
"biocyc":[
"META:TRANS-RXN-94"
],
"metanetx.reaction":[
"MNXR138587"
],
"sbo":"SBO:0000185"
}
},
{
"id":"LPLIPAL1E161pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:1) (periplasm)",
"metabolites":{
"1agpe161_p":-1.0,
"g3pe_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1E161pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1E161pp"
],
"metanetx.reaction":[
"MNXR101152"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MELIBt3ipp",
"name":"Melibiose transport in via antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"melib_c":-1.0,
"melib_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1522",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MELIBt3ipp"
]
},
"annotation":{
"bigg.reaction":[
"MELIBt3ipp"
],
"metanetx.reaction":[
"MNXR138588"
],
"sbo":"SBO:0000185"
}
},
{
"id":"LPLIPAL2ATE181",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoethanolamine, n-C18:1)",
"metabolites":{
"2agpe181_c":-1.0,
"apg181_c":1.0,
"g3pe_c":1.0,
"pg181_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATE181"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATE181"
],
"metanetx.reaction":[
"MNXR101175"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MELIBtex",
"name":"Melibiose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"melib_e":-1.0,
"melib_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MELIBtex"
]
},
"annotation":{
"bigg.reaction":[
"MELIBtex"
],
"metanetx.reaction":[
"MNXR138589"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MEPCT",
"name":"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase",
"metabolites":{
"2me4p_c":-1.0,
"4c2me_c":1.0,
"ctp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2930",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"MEPCT"
]
},
"annotation":{
"bigg.reaction":[
"MEPCT"
],
"biocyc":[
"META:2.7.7.60-RXN"
],
"ec-code":[
"2.7.7.60"
],
"kegg.reaction":[
"R05633"
],
"metanetx.reaction":[
"MNXR96807"
],
"rhea":[
"13430",
"13429",
"13432",
"13431"
],
"sabiork":[
"5231"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03907"
]
}
},
{
"id":"LPLIPAL1E180pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:0) (periplasm)",
"metabolites":{
"1agpe180_p":-1.0,
"g3pe_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1E180pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1E180pp"
],
"metanetx.reaction":[
"MNXR143196"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1E181pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:1) (periplasm)",
"metabolites":{
"1agpe181_p":-1.0,
"g3pe_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1E181pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1E181pp"
],
"metanetx.reaction":[
"MNXR101154"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1G120pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C12:0) (periplasm)",
"metabolites":{
"1agpg120_p":-1.0,
"ddca_p":1.0,
"g3pg_p":1.0,
"h2o_p":-1.0,
"h_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1G120pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1G120pp"
],
"metanetx.reaction":[
"MNXR101155"
],
"sbo":"SBO:0000176"
}
},
{
"id":"METAT",
"name":"Methionine adenosyltransferase",
"metabolites":{
"amet_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"met__L_c":-1.0,
"pi_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3090",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"METAT"
]
},
"annotation":{
"bigg.reaction":[
"METAT"
],
"biocyc":[
"META:S-ADENMETSYN-RXN"
],
"ec-code":[
"2.5.1.6"
],
"kegg.reaction":[
"R00177"
],
"metanetx.reaction":[
"MNXR101407"
],
"reactome.reaction":[
"R-RNO-174391",
"R-SPO-174391",
"R-SCE-174391",
"R-XTR-174391",
"R-ATH-5603114",
"R-MMU-174391",
"R-CFA-174391",
"R-OSA-174391",
"R-MMU-5603114",
"R-DRE-5603114",
"R-DDI-5603114",
"R-ATH-174391",
"R-GGA-174391",
"R-DME-174391",
"R-DRE-174391",
"R-HSA-174391",
"R-PFA-174391",
"R-BTA-5603114",
"R-SSC-5603114",
"R-HSA-5603114",
"R-BTA-174391",
"R-OSA-5603114",
"R-DDI-174391",
"R-RNO-5603114",
"R-TGU-174391",
"R-CFA-5603114",
"R-XTR-5603114",
"R-CEL-174391",
"R-SSC-174391"
],
"rhea":[
"21082",
"21081",
"21080",
"21083"
],
"sabiork":[
"96"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00126"
]
}
},
{
"id":"LPLIPAL2ATG120",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C12:0)",
"metabolites":{
"2agpg120_c":-1.0,
"apg120_c":1.0,
"g3pg_c":1.0,
"pg120_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATG120"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATG120"
],
"metanetx.reaction":[
"MNXR101176"
],
"sbo":"SBO:0000176"
}
},
{
"id":"METDabcpp",
"name":"D-methionine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"met__D_c":1.0,
"met__D_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0246 and STM0247 and STM0245",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"METDabcpp"
]
},
"annotation":{
"bigg.reaction":[
"METDabcpp"
],
"biocyc":[
"META:TRANS-RXN0-202"
],
"metanetx.reaction":[
"MNXR101472"
],
"rhea":[
"29770#1",
"29767#1",
"29769#1",
"29768#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08910",
"rxn05183"
]
}
},
{
"id":"METDtex",
"name":"D-methionine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"met__D_e":-1.0,
"met__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1473 or STM2267 or STM0320 or STM0999",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"METDtex"
]
},
"annotation":{
"bigg.reaction":[
"METDtex"
],
"metanetx.reaction":[
"MNXR101473"
],
"rhea":[
"34913",
"34912",
"34914",
"34911"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08911"
]
}
},
{
"id":"METOX1s",
"name":"Methionine oxidation (spontaneous)",
"metabolites":{
"h2o2_c":-1.0,
"h2o_c":1.0,
"met__L_c":-1.0,
"metsox_S__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"METOX1s"
]
},
"annotation":{
"bigg.reaction":[
"METOX1s"
],
"metanetx.reaction":[
"MNXR101479"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08912",
"rxn09942"
]
}
},
{
"id":"LPLIPAL1G140pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:0) (periplasm)",
"metabolites":{
"1agpg140_p":-1.0,
"g3pg_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1G140pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1G140pp"
],
"metanetx.reaction":[
"MNXR101156"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1G141pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:1) (periplasm)",
"metabolites":{
"1agpg141_p":-1.0,
"g3pg_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1G141pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1G141pp"
],
"metanetx.reaction":[
"MNXR101157"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1G160pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:0) (periplasm)",
"metabolites":{
"1agpg160_p":-1.0,
"g3pg_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1G160pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1G160pp"
],
"metanetx.reaction":[
"MNXR101158"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1G161pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:1) (periplasm)",
"metabolites":{
"1agpg161_p":-1.0,
"g3pg_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1G161pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1G161pp"
],
"metanetx.reaction":[
"MNXR101159"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1G180pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:0) (periplasm)",
"metabolites":{
"1agpg180_p":-1.0,
"g3pg_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1G180pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1G180pp"
],
"metanetx.reaction":[
"MNXR101160"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL1G181pp",
"name":"Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:1) (periplasm)",
"metabolites":{
"1agpg181_p":-1.0,
"g3pg_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0506",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL1G181pp"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL1G181pp"
],
"metanetx.reaction":[
"MNXR101161"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL2A120",
"name":"Lysophospholipase L2 (2-acylglycerophosphotidate, n-C12:0)",
"metabolites":{
"2ddecg3p_c":-1.0,
"ddca_c":1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2A120"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2A120"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101162"
],
"sbo":"SBO:0000176"
}
},
{
"id":"METOX2s",
"name":"Methionine oxidation 2 (spontaneous)",
"metabolites":{
"h2o2_c":-1.0,
"h2o_c":1.0,
"met__L_c":-1.0,
"metsox_R__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"METOX2s"
]
},
"annotation":{
"bigg.reaction":[
"METOX2s"
],
"biocyc":[
"META:RXN0-7188"
],
"metanetx.reaction":[
"MNXR138590"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08913"
]
}
},
{
"id":"METS",
"name":"Methionine synthase",
"metabolites":{
"5mthf_c":-1.0,
"h_c":1.0,
"hcys__L_c":-1.0,
"met__L_c":1.0,
"thf_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4188_S or STM3965",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"METS"
]
},
"annotation":{
"bigg.reaction":[
"METS"
],
"ec-code":[
"2.1.1.13"
],
"kegg.reaction":[
"R00946"
],
"metanetx.reaction":[
"MNXR101481"
],
"rhea":[
"11173",
"11175",
"11174",
"11172"
],
"sabiork":[
"1260"
],
"sbo":"SBO:0000176"
}
},
{
"id":"METSOX1abcpp",
"name":"L-methionine S-oxide transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"metsox_S__L_c":1.0,
"metsox_S__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"METSOX1abcpp"
]
},
"annotation":{
"bigg.reaction":[
"METSOX1abcpp"
],
"biocyc":[
"META:TRANS-RXN0-511"
],
"metanetx.reaction":[
"MNXR101482"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08914",
"rxn05613"
]
}
},
{
"id":"METSOX1tex",
"name":"L-methionine S-oxide diffusion (extracellular)",
"metabolites":{
"metsox_S__L_e":-1.0,
"metsox_S__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"METSOX1tex"
]
},
"annotation":{
"bigg.reaction":[
"METSOX1tex"
],
"metanetx.reaction":[
"MNXR101483"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08915"
]
}
},
{
"id":"METSOX2abcpp",
"name":"L-methionine R-oxide transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"metsox_R__L_c":1.0,
"metsox_R__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"METSOX2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"METSOX2abcpp"
],
"biocyc":[
"META:RXN0-7185"
],
"metanetx.reaction":[
"MNXR138592"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08916"
]
}
},
{
"id":"LPLIPAL2A140",
"name":"Lysophospholipase L2 (2-acylglycerophosphotidate, n-C14:0)",
"metabolites":{
"2tdecg3p_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"ttdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2A140"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2A140"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101163"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL2A141",
"name":"Lysophospholipase L2 (2-acylglycerophosphotidate, n-C14:1)",
"metabolites":{
"2tdec7eg3p_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"ttdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2A141"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2A141"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101164"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL2ATG140",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:0)",
"metabolites":{
"2agpg140_c":-1.0,
"apg140_c":1.0,
"g3pg_c":1.0,
"pg140_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATG140"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATG140"
],
"metanetx.reaction":[
"MNXR101177"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL2A160",
"name":"Lysophospholipase L2 (2-acylglycerophosphotidate, n-C16:0)",
"metabolites":{
"2hdecg3p_c":-1.0,
"glyc3p_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"hdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2A160"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2A160"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101165"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08820"
]
}
},
{
"id":"METSOX2tex",
"name":"L-methionine R-oxide diffusion (extracellular)",
"metabolites":{
"metsox_R__L_e":-1.0,
"metsox_R__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"METSOX2tex"
]
},
"annotation":{
"bigg.reaction":[
"METSOX2tex"
],
"metanetx.reaction":[
"MNXR138593"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08917"
]
}
},
{
"id":"METSOXR1",
"name":"L-methionine-S-oxide reductase",
"metabolites":{
"h2o_c":1.0,
"met__L_c":1.0,
"metsox_S__L_c":-1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM4408 and STM2649) or (STM4408 and STM3915)",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"METSOXR1"
]
},
"annotation":{
"bigg.reaction":[
"METSOXR1"
],
"ec-code":[
"1.8.4.14",
"1.8.4.13"
],
"kegg.reaction":[
"R02025"
],
"metanetx.reaction":[
"MNXR101484"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06077",
"rxn08918"
]
}
},
{
"id":"METSOXR2",
"name":"L-methionine-R-sulfoxide reductase",
"metabolites":{
"h2o_c":1.0,
"met__L_c":1.0,
"metsox_R__L_c":-1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1291 and STM2649) or (STM1291 and STM3915)",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"METSOXR2"
]
},
"annotation":{
"bigg.reaction":[
"METSOXR2"
],
"biocyc":[
"META:1.8.4.14-RXN"
],
"ec-code":[
"1.8.4.14"
],
"kegg.reaction":[
"R07608"
],
"metanetx.reaction":[
"MNXR138594"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08919",
"rxn07439"
]
}
},
{
"id":"LPLIPAL2ATG141",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C14:1)",
"metabolites":{
"2agpg141_c":-1.0,
"apg141_c":1.0,
"g3pg_c":1.0,
"pg141_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATG141"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATG141"
],
"metanetx.reaction":[
"MNXR101178"
],
"sbo":"SBO:0000176"
}
},
{
"id":"METTRS",
"name":"Methionyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"met__L_c":-1.0,
"mettrna_c":1.0,
"ppi_c":1.0,
"trnamet_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2155",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"METTRS"
]
},
"annotation":{
"bigg.reaction":[
"METTRS"
],
"ec-code":[
"6.1.1.10"
],
"kegg.reaction":[
"R03659"
],
"metanetx.reaction":[
"MNXR101488"
],
"sabiork":[
"355"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06443"
]
}
},
{
"id":"MLDCP2App",
"name":"Murein L,D-carboxypeptidase (murein5p5p) (periplasm)",
"metabolites":{
"alaala_p":1.0,
"h2o_p":-1.0,
"murein5p3p_p":1.0,
"murein5p5p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP2App"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP2App"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143239"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08928"
]
}
},
{
"id":"MLDCP2Bpp",
"name":"Murein L,D-carboxypeptidase (murein4p3p) (periplasm)",
"metabolites":{
"ala__D_p":1.0,
"h2o_p":-1.0,
"murein3p3p_p":1.0,
"murein4p3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP2Bpp"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP2Bpp"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143240"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08929"
]
}
},
{
"id":"METabcpp",
"name":"L-methionine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"met__L_c":1.0,
"met__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0246 and STM0247 and STM0245",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"METabcpp"
]
},
"annotation":{
"bigg.reaction":[
"METabcpp"
],
"biocyc":[
"META:RXN0-4522"
],
"metanetx.reaction":[
"MNXR101489"
],
"rhea":[
"29780#2",
"29779#2",
"29782#2",
"29781#2",
"32829#1",
"32827#1",
"32830#1",
"32828#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05219",
"rxn08909",
"rxn11151"
]
}
},
{
"id":"LPLIPAL2ATG160",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:0)",
"metabolites":{
"2agpg160_c":-1.0,
"apg160_c":1.0,
"g3pg_c":1.0,
"pg160_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATG160"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATG160"
],
"metanetx.reaction":[
"MNXR101179"
],
"sbo":"SBO:0000176"
}
},
{
"id":"METtex",
"name":"L-methionine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"met__L_e":-1.0,
"met__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"METtex"
]
},
"annotation":{
"bigg.reaction":[
"METtex"
],
"metanetx.reaction":[
"MNXR101493"
],
"sabiork":[
"13469",
"13461"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08920",
"rxn10976"
]
}
},
{
"id":"MG2t3_2pp",
"name":"Magnesium (Mg+2) transport in/out via proton antiport (periplasm)",
"metabolites":{
"h_c":-2.0,
"h_p":2.0,
"mg2_c":1.0,
"mg2_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"MG2t3_2pp"
]
},
"annotation":{
"bigg.reaction":[
"MG2t3_2pp"
],
"metanetx.reaction":[
"MNXR101508"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08921"
]
}
},
{
"id":"MG2tex",
"name":"Magnesium (Mg+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mg2_e":-1.0,
"mg2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MG2tex"
]
},
"annotation":{
"bigg.reaction":[
"MG2tex"
],
"biocyc":[
"META:TRANS-RXN-141"
],
"metanetx.reaction":[
"MNXR101507"
],
"reactome.reaction":[
"R-MMU-442661",
"R-OSA-5336466",
"R-BTA-5336453",
"R-SSC-442661",
"R-MMU-5336453",
"R-HSA-5339528",
"R-MMU-5336466",
"R-TGU-5339538",
"R-SCE-5336466",
"R-SCE-5339538",
"R-XTR-5336466",
"R-GGA-442661",
"R-ATH-5336453",
"R-BTA-5336466",
"R-RNO-5339538",
"R-SSC-5339538",
"R-SPO-5339528",
"R-DME-5339528",
"R-GGA-5339538",
"R-CEL-5336453",
"R-TGU-5336453",
"R-OSA-5336453",
"R-SCE-5339528",
"R-ATH-5336466",
"R-CFA-5336453",
"R-CEL-5339528",
"R-SPO-5339538",
"R-SSC-5336466",
"R-XTR-5339528",
"R-SSC-5339528",
"R-DRE-5339528",
"R-BTA-5339528",
"R-CFA-442661",
"R-CFA-5339538",
"R-DME-442661",
"R-DME-5339538",
"R-DRE-5339538",
"R-MMU-5339538",
"R-RNO-442661",
"R-RNO-5336453",
"R-DDI-5336466",
"R-RNO-5339528",
"R-HSA-442661",
"R-HSA-5336453",
"R-TGU-5336466",
"R-DRE-5336466",
"R-BTA-442661",
"R-DRE-5336453",
"R-HSA-5339538",
"R-HSA-5336454",
"R-TGU-5339528",
"R-GGA-5339528",
"R-XTR-5339538",
"R-MMU-5339528",
"R-DME-5336453",
"R-RNO-5336466",
"R-CFA-5336466",
"R-CEL-442661",
"R-SPO-5336466",
"R-GGA-5336453",
"R-BTA-5339538",
"R-TGU-442661",
"R-HSA-5336466",
"R-XTR-442661",
"R-CEL-5339538",
"R-MMU-5336430",
"R-DRE-442661",
"R-GGA-5336466",
"R-CFA-5339528"
],
"rhea":[
"29827",
"29828",
"29829",
"29830"
],
"sabiork":[
"12062"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05616",
"rxn08922",
"rxn08923"
]
}
},
{
"id":"MLDCP3App",
"name":"Murein L,D-carboxypeptidase (murein5px3p) (periplasm)",
"metabolites":{
"alaala_p":1.0,
"h2o_p":-1.0,
"murein3px3p_p":1.0,
"murein5px3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP3App"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP3App"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143241"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08930"
]
}
},
{
"id":"MLDEP1pp",
"name":"Murein L,D-endopeptidase (murein3px3p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein3p3p_p":1.0,
"murein3px3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLDEP1pp"
]
},
"annotation":{
"bigg.reaction":[
"MLDEP1pp"
],
"metanetx.reaction":[
"MNXR143242"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08931"
]
}
},
{
"id":"MLDEP2pp",
"name":"Murein L,D-endopeptidase (murein5px3p) (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"murein5p3p_p":1.0,
"murein5px3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLDEP2pp"
]
},
"annotation":{
"bigg.reaction":[
"MLDEP2pp"
],
"metanetx.reaction":[
"MNXR143243"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08932"
]
}
},
{
"id":"MG2tpp",
"name":"Magnesium (+2) transport in via diffusion",
"metabolites":{
"mg2_c":1.0,
"mg2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3952",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"MG2tpp"
]
},
"annotation":{
"bigg.reaction":[
"MG2tpp"
],
"biocyc":[
"META:TRANS-RXN-141"
],
"metanetx.reaction":[
"MNXR101507"
],
"reactome.reaction":[
"R-MMU-442661",
"R-OSA-5336466",
"R-BTA-5336453",
"R-SSC-442661",
"R-MMU-5336453",
"R-HSA-5339528",
"R-MMU-5336466",
"R-TGU-5339538",
"R-SCE-5336466",
"R-SCE-5339538",
"R-XTR-5336466",
"R-GGA-442661",
"R-ATH-5336453",
"R-BTA-5336466",
"R-RNO-5339538",
"R-SSC-5339538",
"R-SPO-5339528",
"R-DME-5339528",
"R-GGA-5339538",
"R-CEL-5336453",
"R-TGU-5336453",
"R-OSA-5336453",
"R-SCE-5339528",
"R-ATH-5336466",
"R-CFA-5336453",
"R-CEL-5339528",
"R-SPO-5339538",
"R-SSC-5336466",
"R-XTR-5339528",
"R-SSC-5339528",
"R-DRE-5339528",
"R-BTA-5339528",
"R-CFA-442661",
"R-CFA-5339538",
"R-DME-442661",
"R-DME-5339538",
"R-DRE-5339538",
"R-MMU-5339538",
"R-RNO-442661",
"R-RNO-5336453",
"R-DDI-5336466",
"R-RNO-5339528",
"R-HSA-442661",
"R-HSA-5336453",
"R-TGU-5336466",
"R-DRE-5336466",
"R-BTA-442661",
"R-DRE-5336453",
"R-HSA-5339538",
"R-HSA-5336454",
"R-TGU-5339528",
"R-GGA-5339528",
"R-XTR-5339538",
"R-MMU-5339528",
"R-DME-5336453",
"R-RNO-5336466",
"R-CFA-5336466",
"R-CEL-442661",
"R-SPO-5336466",
"R-GGA-5336453",
"R-BTA-5339538",
"R-TGU-442661",
"R-HSA-5336466",
"R-XTR-442661",
"R-CEL-5339538",
"R-MMU-5336430",
"R-DRE-442661",
"R-GGA-5336466",
"R-CFA-5339528"
],
"rhea":[
"29827",
"29828",
"29829",
"29830"
],
"sabiork":[
"12062"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05616",
"rxn08922",
"rxn08923"
]
}
},
{
"id":"MGSA",
"name":"Methylglyoxal synthase",
"metabolites":{
"dhap_c":-1.0,
"mthgxl_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1076",
"subsystem":"Methylglyoxal Metabolism",
"notes":{
"original_bigg_ids":[
"MGSA"
]
},
"annotation":{
"bigg.reaction":[
"MGSA"
],
"biocyc":[
"META:METHGLYSYN-RXN"
],
"ec-code":[
"4.2.3.3"
],
"kegg.reaction":[
"R01016"
],
"metanetx.reaction":[
"MNXR101551"
],
"rhea":[
"17939",
"17938",
"17937",
"17940"
],
"sabiork":[
"176"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00748"
]
}
},
{
"id":"LPLIPAL2ATG161",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C16:1)",
"metabolites":{
"2agpg161_c":-1.0,
"apg161_c":1.0,
"g3pg_c":1.0,
"pg161_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATG161"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATG161"
],
"metanetx.reaction":[
"MNXR101180"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MI1PP",
"name":"Myo-inositol 1-phosphatase",
"metabolites":{
"h2o_c":-1.0,
"inost_c":1.0,
"mi1p__D_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2546",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"MI1PP"
]
},
"annotation":{
"bigg.reaction":[
"MI1PP"
],
"biocyc":[
"META:RXN0-5408"
],
"ec-code":[
"3.1.3.25"
],
"kegg.reaction":[
"R01185"
],
"metanetx.reaction":[
"MNXR101570"
],
"reactome.reaction":[
"R-ATH-1855154",
"R-MMU-1855154",
"R-RNO-1855154",
"R-BTA-1855154",
"R-OSA-1855154",
"R-CFA-1855154",
"R-DDI-1855154",
"R-DME-1855154",
"R-GGA-1855154",
"R-SSC-1855154",
"R-CEL-1855154",
"R-TGU-1855154",
"R-XTR-1855154",
"R-DRE-1855154",
"R-HSA-1855154",
"R-SCE-1855154"
],
"rhea":[
"27670",
"27671",
"27672",
"27673"
],
"sabiork":[
"1422"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00881"
]
}
},
{
"id":"MICITDr",
"name":"2-methylisocitrate dehydratase",
"metabolites":{
"2mcacn_c":-1.0,
"h2o_c":-1.0,
"micit_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0158",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MICITD"
]
},
"annotation":{
"bigg.reaction":[
"MICITDr"
],
"biocyc":[
"META:4.2.1.99-RXN"
],
"ec-code":[
"4.2.1.99"
],
"kegg.reaction":[
"R04425"
],
"metanetx.reaction":[
"MNXR101580"
],
"rhea":[
"17943",
"17944",
"17942",
"17941"
],
"sabiork":[
"4112"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03061"
]
}
},
{
"id":"MINOHPtexi",
"name":"Myo-inositol phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"minohp_e":-1.0,
"minohp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"MINOHPtexi"
]
},
"annotation":{
"bigg.reaction":[
"MINOHPtexi"
],
"metanetx.reaction":[
"MNXR101585"
],
"reactome.reaction":[
"R-HSA-1855164",
"R-HSA-1855188",
"R-HSA-1855187"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13346",
"rxn08925"
]
}
},
{
"id":"MLTG1",
"name":"Maltodextrin glucosidase (maltotriose)",
"metabolites":{
"glc__D_c":1.0,
"h2o_c":-1.0,
"malt_c":1.0,
"malttr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0401",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MLTG1"
]
},
"annotation":{
"bigg.reaction":[
"MLTG1"
],
"biocyc":[
"META:RXN0-5183"
],
"ec-code":[
"3.2.1.20"
],
"metanetx.reaction":[
"MNXR101619"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05746"
]
}
},
{
"id":"MLTG2",
"name":"Maltodextrin glucosidase (maltotetraose)",
"metabolites":{
"glc__D_c":1.0,
"h2o_c":-1.0,
"malttr_c":1.0,
"maltttr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0401",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MLTG2"
]
},
"annotation":{
"bigg.reaction":[
"MLTG2"
],
"biocyc":[
"META:MALTET-RXN"
],
"metanetx.reaction":[
"MNXR101620"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08933"
]
}
},
{
"id":"MLTG3",
"name":"Maltodextrin glucosidase (maltopentaose)",
"metabolites":{
"glc__D_c":1.0,
"h2o_c":-1.0,
"maltpt_c":-1.0,
"maltttr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0401",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MLTG3"
]
},
"annotation":{
"bigg.reaction":[
"MLTG3"
],
"biocyc":[
"META:RXN-14281"
],
"ec-code":[
"3.2.1.20",
"3.2.1.74"
],
"metanetx.reaction":[
"MNXR101621"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08934"
]
}
},
{
"id":"MLTG4",
"name":"Maltodextrin glucosidase (maltohexaose)",
"metabolites":{
"glc__D_c":1.0,
"h2o_c":-1.0,
"malthx_c":-1.0,
"maltpt_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0401",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MLTG4"
]
},
"annotation":{
"bigg.reaction":[
"MLTG4"
],
"biocyc":[
"META:RXN-14282"
],
"ec-code":[
"3.2.1.20"
],
"metanetx.reaction":[
"MNXR101622"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08935"
]
}
},
{
"id":"MLDCP1App",
"name":"Murein L,D-carboxypeptidase (murein5px4p) (periplasm)",
"metabolites":{
"alaala_p":1.0,
"h2o_p":-1.0,
"murein3px4p_p":1.0,
"murein5px4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MLDCP1App"
]
},
"annotation":{
"bigg.reaction":[
"MLDCP1App"
],
"ec-code":[
"3.4.17.13"
],
"metanetx.reaction":[
"MNXR143237"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08926"
]
}
},
{
"id":"MLTG5",
"name":"Maltodextrin glucosidase (maltoheptaose)",
"metabolites":{
"glc__D_c":1.0,
"h2o_c":-1.0,
"malthp_c":-1.0,
"malthx_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0401",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MLTG5"
]
},
"annotation":{
"bigg.reaction":[
"MLTG5"
],
"biocyc":[
"META:RXN-14283"
],
"ec-code":[
"3.2.1.20"
],
"metanetx.reaction":[
"MNXR101623"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08936"
]
}
},
{
"id":"LPLIPAL2ATG180",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:0)",
"metabolites":{
"2agpg180_c":-1.0,
"apg180_c":1.0,
"g3pg_c":1.0,
"pg180_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATG180"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATG180"
],
"metanetx.reaction":[
"MNXR101181"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MLTGY1pp",
"name":"Murein lytic transglycosylase (murein4p4p) (periplasm)",
"metabolites":{
"anhgm4p_p":2.0,
"murein4p4p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4582 or STM2988 or STM2831 or STM1799 or STM3112",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLTGY1pp"
]
},
"annotation":{
"bigg.reaction":[
"MLTGY1pp"
],
"metanetx.reaction":[
"MNXR143245"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08937"
]
}
},
{
"id":"LPLIPAL2ATG181",
"name":"Lysophospholipase L2 (acyltransferase, 2-acyl-glycerophosphoglycerol, n-C18:1)",
"metabolites":{
"2agpg181_c":-1.0,
"apg181_c":1.0,
"g3pg_c":1.0,
"pg181_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2ATG181"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2ATG181"
],
"metanetx.reaction":[
"MNXR101182"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MLTGY2pp",
"name":"Murein lytic transglycosylase (murein4p3p) (periplasm)",
"metabolites":{
"anhgm3p_p":1.0,
"anhgm4p_p":1.0,
"murein4p3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4582 or STM2988 or STM2831 or STM1799 or STM3112",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLTGY2pp"
]
},
"annotation":{
"bigg.reaction":[
"MLTGY2pp"
],
"metanetx.reaction":[
"MNXR143246"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08938"
]
}
},
{
"id":"LPLIPAL2E120",
"name":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C12:0)",
"metabolites":{
"2agpe120_c":-1.0,
"ddca_c":1.0,
"g3pe_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2E120"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2E120"
],
"metanetx.reaction":[
"MNXR101183"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MLTGY3pp",
"name":"Murein lytic transglycosylase (murein3p3p) (periplasm)",
"metabolites":{
"anhgm3p_p":2.0,
"murein3p3p_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4582 or STM2988 or STM2831 or STM1799 or STM3112",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLTGY3pp"
]
},
"annotation":{
"bigg.reaction":[
"MLTGY3pp"
],
"metanetx.reaction":[
"MNXR143247"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08939"
]
}
},
{
"id":"MLTGY4pp",
"name":"Murein lytic transglycosylase (murein4px4p4p) (periplasm)",
"metabolites":{
"anhgm4p_p":1.0,
"murein4px4p4p_p":-1.0,
"murein4px4p_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4582 or STM2988 or STM2831 or STM1799 or STM3112",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"MLTGY4pp"
]
},
"annotation":{
"bigg.reaction":[
"MLTGY4pp"
],
"metanetx.reaction":[
"MNXR143248"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08940"
]
}
},
{
"id":"NADH5",
"name":"NADH dehydrogenase (ubiquinone-8 )",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1211",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADH5"
]
},
"annotation":{
"bigg.reaction":[
"NADH5"
],
"metanetx.reaction":[
"MNXR101872"
],
"rhea":[
"29109",
"29107",
"29108",
"29110"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08975"
]
}
},
{
"id":"NADH9",
"name":"NADH dehydrogenase (demethylmenaquinone-8 & 0 protons)",
"metabolites":{
"2dmmq8_c":-1.0,
"2dmmql8_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1211",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADH9"
]
},
"annotation":{
"bigg.reaction":[
"NADH9"
],
"metanetx.reaction":[
"MNXR101876"
],
"rhea":[
"30509",
"30510",
"30508",
"30507"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08976"
]
}
},
{
"id":"LPLIPAL2E140",
"name":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:0)",
"metabolites":{
"2agpe140_c":-1.0,
"g3pe_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ttdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2E140"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2E140"
],
"metanetx.reaction":[
"MNXR101184"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NADK",
"name":"NAD kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2683",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NADK"
]
},
"annotation":{
"bigg.reaction":[
"NADK"
],
"biocyc":[
"META:NAD-KIN-RXN"
],
"ec-code":[
"2.7.1.23"
],
"kegg.reaction":[
"R00104"
],
"metanetx.reaction":[
"MNXR101882"
],
"reactome.reaction":[
"R-DDI-197198",
"R-OSA-197198",
"R-TGU-197198",
"R-XTR-197198",
"R-SCE-197198",
"R-SPO-197198",
"R-DRE-197198",
"R-GGA-197198",
"R-ATH-197198",
"R-CFA-197198",
"R-DME-197198",
"R-MMU-197198",
"R-HSA-197198",
"R-RNO-197198",
"R-BTA-197198"
],
"rhea":[
"18631",
"18632",
"18629",
"18630"
],
"sabiork":[
"47"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00077"
]
}
},
{
"id":"NADN",
"name":"NAD nucleosidase",
"metabolites":{
"adprib_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"ncam_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NADN"
]
},
"annotation":{
"bigg.reaction":[
"NADN"
],
"biocyc":[
"META:NADNUCLEOSID-RXN",
"META:RXN-13859"
],
"ec-code":[
"3.5.1.-",
"3.2.2.5",
"3.2.2.6"
],
"kegg.reaction":[
"R00102"
],
"metanetx.reaction":[
"MNXR101888"
],
"reactome.reaction":[
"R-BTA-8870346",
"R-RNO-8938076",
"R-BTA-8938076",
"R-TGU-8938076",
"R-CFA-8870346",
"R-SSC-8938076",
"R-XTR-8870346",
"R-HSA-8870346",
"R-GGA-8870346",
"R-HSA-8938076",
"R-GGA-8938076",
"R-MMU-8938076",
"R-RNO-8870346",
"R-CFA-8938076",
"R-MMU-8870346",
"R-XTR-8938076",
"R-TGU-8870346",
"R-SSC-8870346"
],
"rhea":[
"16304",
"16302",
"16303",
"16301"
],
"sabiork":[
"683"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00075",
"rxn13106",
"rxn14307"
]
}
},
{
"id":"MLTP1",
"name":"Maltodextrin phosphorylase (maltopentaose)",
"metabolites":{
"g1p_c":1.0,
"maltpt_c":-1.0,
"maltttr_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3514",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MLTP1"
]
},
"annotation":{
"bigg.reaction":[
"MLTP1"
],
"biocyc":[
"META:RXN-14284"
],
"ec-code":[
"2.4.1.1"
],
"metanetx.reaction":[
"MNXR101632"
],
"rhea":[
"29650",
"29647",
"29648",
"29649"
],
"sabiork":[
"6523",
"10119"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08941"
]
}
},
{
"id":"MLTP2",
"name":"Maltodextrin phosphorylase (maltohexaose)",
"metabolites":{
"g1p_c":1.0,
"malthx_c":-1.0,
"maltpt_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3514",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MLTP2"
]
},
"annotation":{
"bigg.reaction":[
"MLTP2"
],
"biocyc":[
"META:RXN-14285"
],
"ec-code":[
"2.4.1.1"
],
"metanetx.reaction":[
"MNXR101633"
],
"rhea":[
"29683",
"29684",
"29686",
"29685"
],
"sabiork":[
"10080"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08942"
]
}
},
{
"id":"MLTP3",
"name":"Maltodextrin phosphorylase (maltoheptaose)",
"metabolites":{
"g1p_c":1.0,
"malthp_c":-1.0,
"malthx_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3514",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MLTP3"
]
},
"annotation":{
"bigg.reaction":[
"MLTP3"
],
"biocyc":[
"META:RXN-14286"
],
"ec-code":[
"2.4.1.1"
],
"metanetx.reaction":[
"MNXR101634"
],
"sabiork":[
"7988",
"10132"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08943"
]
}
},
{
"id":"NADPHQR2",
"name":"NADPH Quinone Reductase (Ubiquinone-8)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3179",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADPHQR2"
]
},
"annotation":{
"bigg.reaction":[
"NADPHQR2"
],
"metanetx.reaction":[
"MNXR101891"
],
"rhea":[
"29114",
"29112",
"29113",
"29111"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08977"
]
}
},
{
"id":"LPLIPAL2E141",
"name":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C14:1)",
"metabolites":{
"2agpe141_c":-1.0,
"g3pe_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ttdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2E141"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2E141"
],
"metanetx.reaction":[
"MNXR101185"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NADPHQR3",
"name":"NADPH Quinone Reductase (Menaquinone-8)",
"metabolites":{
"h_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3179",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADPHQR3"
]
},
"annotation":{
"bigg.reaction":[
"NADPHQR3"
],
"metanetx.reaction":[
"MNXR101892"
],
"rhea":[
"29116",
"29115",
"29117",
"29118"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08978"
]
}
},
{
"id":"MME",
"name":"Methylmalonyl-CoA epimerase",
"metabolites":{
"mmcoa__R_c":-1.0,
"mmcoa__S_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MME"
]
},
"annotation":{
"bigg.reaction":[
"MME"
],
"biocyc":[
"META:METHYLMALONYL-COA-EPIM-RXN"
],
"ec-code":[
"5.1.99.1"
],
"kegg.reaction":[
"R02765"
],
"metanetx.reaction":[
"MNXR101657"
],
"reactome.reaction":[
"R-DRE-71020",
"R-RNO-71020",
"R-CFA-71020",
"R-GGA-71020",
"R-CEL-71020",
"R-BTA-71020",
"R-XTR-71020",
"R-DDI-71020",
"R-SSC-71020",
"R-HSA-71020",
"R-TGU-71020",
"R-MMU-71020"
],
"rhea":[
"20556",
"20555",
"20554",
"20553"
],
"sabiork":[
"2642"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01996"
]
}
},
{
"id":"MMETtex",
"name":"S-methyl-L-methionine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mmet_e":-1.0,
"mmet_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MMETtex"
]
},
"annotation":{
"bigg.reaction":[
"MMETtex"
],
"biocyc":[
"META:TRANS-RXN0-486"
],
"metanetx.reaction":[
"MNXR101659"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08945"
]
}
},
{
"id":"NADPHQR4",
"name":"NADPH Quinone Reductase (2-Demethylmenaquinone-8)",
"metabolites":{
"2dmmq8_c":-1.0,
"2dmmql8_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3179",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADPHQR4"
]
},
"annotation":{
"bigg.reaction":[
"NADPHQR4"
],
"metanetx.reaction":[
"MNXR101893"
],
"rhea":[
"30511",
"30513",
"30514",
"30512"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08979"
]
}
},
{
"id":"LPLIPAL2E160",
"name":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:0)",
"metabolites":{
"2agpe160_c":-1.0,
"g3pe_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2E160"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2E160"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101186"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08841"
]
}
},
{
"id":"NADPPPS",
"name":"NADP phosphatase",
"metabolites":{
"h2o_c":-1.0,
"nad_c":1.0,
"nadp_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NADPPPS"
]
},
"annotation":{
"bigg.reaction":[
"NADPPPS"
],
"biocyc":[
"META:RXN-5822"
],
"ec-code":[
"3.1.3.2",
"3.1.3.-",
"3.1.3.1"
],
"kegg.reaction":[
"R00118"
],
"metanetx.reaction":[
"MNXR101798"
],
"rhea":[
"28050",
"28052",
"28053",
"28051"
],
"sabiork":[
"697"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00088"
]
}
},
{
"id":"NADS1",
"name":"NAD synthase (nh3)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"dnad_c":-1.0,
"h_c":1.0,
"nad_c":1.0,
"nh4_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1310",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NADS1"
]
},
"annotation":{
"bigg.reaction":[
"NADS1"
],
"biocyc":[
"META:NAD-SYNTH-NH3-RXN"
],
"ec-code":[
"6.3.5.1",
"6.3.1.5"
],
"kegg.reaction":[
"R00189"
],
"metanetx.reaction":[
"MNXR101897"
],
"rhea":[
"21188",
"21190",
"21191",
"21189"
],
"sabiork":[
"13688"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00138"
]
}
},
{
"id":"MN2t3pp",
"name":"Manganese (Mn+2) transport out via proton antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"mn2_c":-1.0,
"mn2_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4061 or STM0758",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"MN2t3pp"
]
},
"annotation":{
"bigg.reaction":[
"MN2t3pp"
],
"metanetx.reaction":[
"MNXR101669"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08946"
]
}
},
{
"id":"MN2tpp",
"name":"Manganese transport in via permease (no H+)",
"metabolites":{
"mn2_c":1.0,
"mn2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3190",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"MN2tpp"
]
},
"annotation":{
"bigg.reaction":[
"MN2tpp"
],
"biocyc":[
"META:RXN0-16",
"META:TRANS-RXN0-487"
],
"metanetx.reaction":[
"MNXR101670"
],
"rhea":[
"28702",
"28699",
"28700",
"28701"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08952",
"rxn08947"
]
}
},
{
"id":"MN6PP",
"name":"Mannose 6-phosphate phosphatase",
"metabolites":{
"h2o_c":-1.0,
"man6p_c":-1.0,
"man_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0840 or STM0842",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MN6PP"
]
},
"annotation":{
"bigg.reaction":[
"MN6PP"
],
"metanetx.reaction":[
"MNXR101671"
],
"rhea":[
"28556",
"28557",
"28555",
"28554"
],
"sabiork":[
"9955",
"7278"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08948"
]
}
},
{
"id":"MNLptspp",
"name":"Mannitol transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"mnl1p_c":1.0,
"mnl_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3685 and STM2431 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MNLptspp"
]
},
"annotation":{
"bigg.reaction":[
"MNLptspp"
],
"metanetx.reaction":[
"MNXR101677"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08949",
"rxn13944",
"rxn13934",
"rxn05617"
]
}
},
{
"id":"MNLtex",
"name":"Mannitol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mnl_e":-1.0,
"mnl_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MNLtex"
]
},
"annotation":{
"bigg.reaction":[
"MNLtex"
],
"metanetx.reaction":[
"MNXR101678"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08950"
]
}
},
{
"id":"NADTRHD",
"name":"NAD transhydrogenase",
"metabolites":{
"nad_c":-1.0,
"nadh_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4126 or (STM1480 and STM1479)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADTRHD"
]
},
"annotation":{
"bigg.reaction":[
"NADTRHD"
],
"biocyc":[
"META:PYRNUTRANSHYDROGEN-RXN"
],
"ec-code":[
"1.6.1.3",
"1.6.1.2",
"1.6.1.1"
],
"kegg.reaction":[
"R00112"
],
"metanetx.reaction":[
"MNXR101898"
],
"rhea":[
"11692",
"11695",
"11694",
"11693"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00083"
]
}
},
{
"id":"NAMNPP",
"name":"Nicotinic acid mononucleotide pyrophosphorylase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"nac_c":-1.0,
"nicrnt_c":1.0,
"pi_c":1.0,
"ppi_c":1.0,
"prpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1004",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NAMNPP"
]
},
"annotation":{
"bigg.reaction":[
"NAMNPP"
],
"biocyc":[
"META:NICOTINATEPRIBOSYLTRANS-RXN"
],
"ec-code":[
"6.3.4.21"
],
"kegg.reaction":[
"R01724"
],
"metanetx.reaction":[
"MNXR101909"
],
"rhea":[
"36164",
"36163",
"36166",
"36165"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08981"
]
}
},
{
"id":"MNt2pp",
"name":"Manganese (Mn+2) transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"mn2_c":1.0,
"mn2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2408",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MNt2pp"
]
},
"annotation":{
"bigg.reaction":[
"MNt2pp"
],
"biocyc":[
"META:TRANS-RXN-241"
],
"metanetx.reaction":[
"MNXR101681"
],
"rhea":[
"29007",
"29010",
"29008",
"29009"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05618",
"rxn08951"
]
}
},
{
"id":"NAt3_1p5pp",
"name":"Sodium proton antiporter (H:NA is 1.5) (periplasm)",
"metabolites":{
"h_c":3.0,
"h_p":-3.0,
"na1_c":-2.0,
"na1_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1806",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NAt3_1p5pp"
]
},
"annotation":{
"bigg.reaction":[
"NAt3_1p5pp"
],
"biocyc":[
"META:TRANS-RXN-130"
],
"metanetx.reaction":[
"MNXR101914"
],
"rhea":[
"29249",
"29250",
"29247",
"29248"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10179",
"rxn08982"
]
}
},
{
"id":"MNtex",
"name":"Manganese (Mn+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mn2_e":-1.0,
"mn2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MNtex"
]
},
"annotation":{
"bigg.reaction":[
"MNtex"
],
"biocyc":[
"META:RXN0-16",
"META:TRANS-RXN0-487"
],
"metanetx.reaction":[
"MNXR101670"
],
"rhea":[
"28702",
"28699",
"28700",
"28701"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08952",
"rxn08947"
]
}
},
{
"id":"LPLIPAL2E161",
"name":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C16:1)",
"metabolites":{
"2agpe161_c":-1.0,
"g3pe_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2E161"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2E161"
],
"metanetx.reaction":[
"MNXR101187"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MOAT",
"name":"3-deoxy-D-manno-octulosonic acid transferase",
"metabolites":{
"ckdo_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"kdolipid4_c":1.0,
"lipidA_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3724",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"MOAT"
]
},
"annotation":{
"bigg.reaction":[
"MOAT"
],
"biocyc":[
"META:KDOTRANS-RXN"
],
"ec-code":[
"2.4.99.12"
],
"kegg.reaction":[
"R04658"
],
"metanetx.reaction":[
"MNXR101683"
],
"rhea":[
"28067",
"28068",
"28066",
"28069"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03182"
]
}
},
{
"id":"MOAT2",
"name":"3-deoxy-D-manno-octulosonic acid transferase",
"metabolites":{
"ckdo_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"kdo2lipid4_c":1.0,
"kdolipid4_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3724",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"MOAT2"
]
},
"annotation":{
"bigg.reaction":[
"MOAT2"
],
"biocyc":[
"META:KDOTRANS2-RXN"
],
"ec-code":[
"2.4.99.13"
],
"kegg.reaction":[
"R05074",
"R06285"
],
"metanetx.reaction":[
"MNXR101684"
],
"rhea":[
"28063",
"28062",
"28065",
"28064"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03439"
]
}
},
{
"id":"MOAT3C",
"name":"3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis)",
"metabolites":{
"ckdo_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"kphphhlipa_c":1.0,
"phphhlipa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3715",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"MOAT3C"
]
},
"annotation":{
"bigg.reaction":[
"MOAT3C"
],
"metanetx.reaction":[
"MNXR101686"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08954"
]
}
},
{
"id":"NAt3_2pp",
"name":"Sodium proton antiporter (H:NA is 2) (periplasm)",
"metabolites":{
"h_c":2.0,
"h_p":-2.0,
"na1_c":-1.0,
"na1_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0039",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NAt3_2pp"
]
},
"annotation":{
"bigg.reaction":[
"NAt3_2pp"
],
"biocyc":[
"META:TRANS-RXN-129"
],
"metanetx.reaction":[
"MNXR101915"
],
"rhea":[
"29252",
"29251",
"29254",
"29253"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10178",
"rxn08983"
]
}
},
{
"id":"NAtex",
"name":"Sodium transport via diffusion (extracellular to periplasm)",
"metabolites":{
"na1_e":-1.0,
"na1_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"NAtex"
]
},
"annotation":{
"bigg.reaction":[
"NAtex"
],
"biocyc":[
"META:TRANS-RXN-189"
],
"metanetx.reaction":[
"MNXR101804"
],
"reactome.reaction":[
"R-TGU-2671885",
"R-MMU-3295580",
"R-GGA-5576895",
"R-GGA-2672334",
"R-BTA-2672334",
"R-DRE-2671885",
"R-MMU-2730664",
"R-BTA-3295580",
"R-BTA-2730664",
"R-CFA-3295580",
"R-XTR-2672334",
"R-RNO-2671885",
"R-HSA-2671885",
"R-RNO-2730664",
"R-SSC-2671885",
"R-HSA-3295580",
"R-SSC-2672334",
"R-TGU-2672334",
"R-DRE-5576895",
"R-CEL-2730664",
"R-HSA-5576895",
"R-MMU-2672334",
"R-BTA-5576895",
"R-TGU-2730664",
"R-CFA-2672334",
"R-HSA-2730664",
"R-CFA-5576895",
"R-XTR-2671885",
"R-XTR-5576895",
"R-CFA-2730664",
"R-DME-2730664",
"R-XTR-3295580",
"R-GGA-3295580",
"R-BTA-2671885",
"R-DRE-3295580",
"R-MMU-2671885",
"R-SSC-3295580",
"R-CEL-3295580",
"R-GGA-2671885",
"R-GGA-2730664",
"R-HSA-2672334",
"R-SSC-5576895",
"R-CEL-2671885",
"R-DME-3295580",
"R-RNO-2672334",
"R-RNO-3295580",
"R-MMU-5576895",
"R-RNO-5576895",
"R-TGU-3295580",
"R-XTR-2730664",
"R-CFA-2671885"
],
"rhea":[
"34963",
"34966",
"34965",
"34964"
],
"sabiork":[
"12962"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08985",
"rxn10899"
]
}
},
{
"id":"NDPK1",
"name":"Nucleoside-diphosphate kinase (ATP:GDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gdp_c":-1.0,
"gtp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488 or STM2526",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NDPK1"
]
},
"annotation":{
"bigg.reaction":[
"NDPK1"
],
"biocyc":[
"META:GDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R00330"
],
"metanetx.reaction":[
"MNXR96119"
],
"rhea":[
"27689",
"27686",
"27688",
"27687"
],
"sabiork":[
"138"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00237"
]
}
},
{
"id":"NDPK2",
"name":"Nucleoside-diphosphate kinase (ATP:UDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"udp_c":-1.0,
"utp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488 or STM2526",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NDPK2"
]
},
"annotation":{
"bigg.reaction":[
"NDPK2"
],
"biocyc":[
"META:UDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R00156"
],
"metanetx.reaction":[
"MNXR101935"
],
"rhea":[
"25101",
"25098",
"25100",
"25099"
],
"sabiork":[
"199"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00117"
]
}
},
{
"id":"NDPK3",
"name":"Nucleoside-diphosphate kinase (ATP:CDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cdp_c":-1.0,
"ctp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488 or STM2526",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NDPK3"
]
},
"annotation":{
"bigg.reaction":[
"NDPK3"
],
"biocyc":[
"META:CDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R00570"
],
"metanetx.reaction":[
"MNXR101936"
],
"rhea":[
"25240",
"25239",
"25237",
"25238"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00409"
]
}
},
{
"id":"MOBDabcpp",
"name":"Molybdate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"mobd_c":1.0,
"mobd_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2441 and STM2444 and STM2443 and STM2442) or (STM0781 and STM0782 and STM0783) or (STM2441 and STM2443 and STM2442 and STM4063)",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"MOBDabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MOBDabcpp"
],
"biocyc":[
"META:3.6.3.29-RXN",
"META:ABC-19-RXN"
],
"ec-code":[
"3.6.3.29"
],
"metanetx.reaction":[
"MNXR101689"
],
"rhea":[
"22020#1",
"22023#1",
"22021#1",
"22022#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05619",
"rxn08955"
]
}
},
{
"id":"MOBDtex",
"name":"Molybdate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mobd_e":-1.0,
"mobd_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MOBDtex"
]
},
"annotation":{
"bigg.reaction":[
"MOBDtex"
],
"metanetx.reaction":[
"MNXR101690"
],
"rhea":[
"34909",
"34907",
"34910",
"34908"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08956"
]
}
},
{
"id":"NDPK4",
"name":"Nucleoside-diphosphate kinase (ATP:dTDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dtdp_c":-1.0,
"dttp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2526 or STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NDPK4"
]
},
"annotation":{
"bigg.reaction":[
"NDPK4"
],
"biocyc":[
"META:DTDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R02093"
],
"metanetx.reaction":[
"MNXR101937"
],
"rhea":[
"27682",
"27684",
"27683",
"27685"
],
"sabiork":[
"423"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01512"
]
}
},
{
"id":"MOHMT",
"name":"3-methyl-2-oxobutanoate hydroxymethyltransferase",
"metabolites":{
"2dhp_c":1.0,
"3mob_c":-1.0,
"h2o_c":-1.0,
"mlthf_c":-1.0,
"thf_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0182",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"MOHMT"
]
},
"annotation":{
"bigg.reaction":[
"MOHMT"
],
"ec-code":[
"2.1.2.11"
],
"kegg.reaction":[
"R01226"
],
"metanetx.reaction":[
"MNXR101702"
],
"rhea":[
"11824",
"11827",
"11825",
"11826"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL2E180",
"name":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:0)",
"metabolites":{
"2agpe180_c":-1.0,
"g3pe_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ocdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2E180"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2E180"
],
"ec-code":[
"3.1.1.5"
],
"metanetx.reaction":[
"MNXR101188"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08843"
]
}
},
{
"id":"MPTG",
"name":"Murein polymerizing transglycosylase",
"metabolites":{
"h_c":2.0,
"murein5p5p_p":1.0,
"uaagmda_c":-2.0,
"udcpdp_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2531 or STM0190 or STM3493",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MPTG"
]
},
"annotation":{
"bigg.reaction":[
"MPTG"
],
"metanetx.reaction":[
"MNXR143249"
],
"sbo":"SBO:0000185"
}
},
{
"id":"NDPK5",
"name":"Nucleoside-diphosphate kinase (ATP:dGDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dgdp_c":-1.0,
"dgtp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2526 or STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NDPK5"
]
},
"annotation":{
"bigg.reaction":[
"NDPK5"
],
"biocyc":[
"META:DGDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R01857"
],
"metanetx.reaction":[
"MNXR96118"
],
"rhea":[
"27692",
"27690",
"27691",
"27693"
],
"sabiork":[
"183"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01353"
]
}
},
{
"id":"NDPK6",
"name":"Nucleoside-diphosphate kinase (ATP:dUDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dudp_c":-1.0,
"dutp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0488 or STM2526",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NDPK6"
]
},
"annotation":{
"bigg.reaction":[
"NDPK6"
],
"biocyc":[
"META:DUDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R02331"
],
"metanetx.reaction":[
"MNXR101938"
],
"rhea":[
"28584",
"28583",
"28582",
"28585"
],
"sabiork":[
"421"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01678"
]
}
},
{
"id":"LPLIPAL2E181",
"name":"Lysophospholipase L2 (2-acylglycerophosphoethanolamine, n-C18:1)",
"metabolites":{
"2agpe181_c":-1.0,
"g3pe_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ocdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2E181"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2E181"
],
"metanetx.reaction":[
"MNXR101189"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NDPK7",
"name":"Nucleoside-diphosphate kinase (ATP:dCDP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dcdp_c":-1.0,
"dctp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2526 or STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NDPK7"
]
},
"annotation":{
"bigg.reaction":[
"NDPK7"
],
"biocyc":[
"META:DCDPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R02326"
],
"metanetx.reaction":[
"MNXR101939"
],
"rhea":[
"27678",
"27681",
"27680",
"27679"
],
"sabiork":[
"422"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01673"
]
}
},
{
"id":"NDPK8",
"name":"Nucleoside-diphosphate kinase (ATP:dADP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dadp_c":-1.0,
"datp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2526 or STM0488",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NDPK8"
]
},
"annotation":{
"bigg.reaction":[
"NDPK8"
],
"biocyc":[
"META:DADPKIN-RXN"
],
"ec-code":[
"2.7.4.6"
],
"kegg.reaction":[
"R01137"
],
"metanetx.reaction":[
"MNXR101940"
],
"rhea":[
"27675",
"27674",
"27677",
"27676"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00839"
]
}
},
{
"id":"NH4tex",
"name":"Ammonia transport via diffusion (extracellular to periplasm)",
"metabolites":{
"nh4_e":-1.0,
"nh4_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"NH4tex"
]
},
"annotation":{
"bigg.reaction":[
"NH4tex"
],
"biocyc":[
"META:TRANS-RXN0-206",
"META:RXN-9615",
"META:TRANS-RXN0-544"
],
"metanetx.reaction":[
"MNXR101950"
],
"reactome.reaction":[
"R-CEL-444416",
"R-SSC-444416",
"R-DDI-444416",
"R-MMU-444416",
"R-DRE-444416",
"R-GGA-444416",
"R-CFA-444416",
"R-HSA-444416",
"R-XTR-444416",
"R-BTA-444416",
"R-RNO-444416",
"R-TGU-444416",
"R-DME-444416"
],
"rhea":[
"28749",
"28748",
"28750",
"28747"
],
"sabiork":[
"11683"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13364",
"rxn09835",
"rxn05466",
"rxn08987",
"rxn08986",
"rxn09736"
]
}
},
{
"id":"NH4tpp",
"name":"Ammonia reversible transport (periplasm)",
"metabolites":{
"nh4_c":1.0,
"nh4_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001 or STM0463",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NH4tpp"
]
},
"annotation":{
"bigg.reaction":[
"NH4tpp"
],
"biocyc":[
"META:TRANS-RXN0-206",
"META:RXN-9615",
"META:TRANS-RXN0-544"
],
"metanetx.reaction":[
"MNXR101950"
],
"reactome.reaction":[
"R-CEL-444416",
"R-SSC-444416",
"R-DDI-444416",
"R-MMU-444416",
"R-DRE-444416",
"R-GGA-444416",
"R-CFA-444416",
"R-HSA-444416",
"R-XTR-444416",
"R-BTA-444416",
"R-RNO-444416",
"R-TGU-444416",
"R-DME-444416"
],
"rhea":[
"28749",
"28748",
"28750",
"28747"
],
"sabiork":[
"11683"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13364",
"rxn09835",
"rxn05466",
"rxn08987",
"rxn08986",
"rxn09736"
]
}
},
{
"id":"NHFRBO",
"name":"NADH:flavorubredoxin oxidoreductase",
"metabolites":{
"h2o_c":1.0,
"h_c":-1.0,
"n2o_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"no_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2840 and STM2841",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NHFRBO"
]
},
"annotation":{
"bigg.reaction":[
"NHFRBO"
],
"biocyc":[
"META:RXN-14138"
],
"ec-code":[
"1.7.1.14"
],
"kegg.reaction":[
"R02492"
],
"metanetx.reaction":[
"MNXR101954"
],
"rhea":[
"29610",
"29609",
"29607",
"29608"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MPTG2",
"name":"Murein polymerizing transglycosylase 2 (three linked units)",
"metabolites":{
"h_c":1.0,
"murein5p5p5p_p":1.0,
"murein5p5p_p":-1.0,
"uaagmda_c":-1.0,
"udcpdp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0190 or STM2531 or STM3493",
"subsystem":"Murein Biosynthesis",
"notes":{
"original_bigg_ids":[
"MPTG2"
]
},
"annotation":{
"bigg.reaction":[
"MPTG2"
],
"metanetx.reaction":[
"MNXR143250"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MSO3tex",
"name":"Methanesulfonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mso3_e":-1.0,
"mso3_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MSO3tex"
]
},
"annotation":{
"bigg.reaction":[
"MSO3tex"
],
"metanetx.reaction":[
"MNXR101742"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08960"
]
}
},
{
"id":"MTAN",
"name":"Methylthioadenosine nucleosidase",
"metabolites":{
"5mta_c":-1.0,
"5mtr_c":1.0,
"ade_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0207",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"MTAN"
]
},
"annotation":{
"bigg.reaction":[
"MTAN"
],
"biocyc":[
"META:METHYLTHIOADENOSINE-NUCLEOSIDASE-RXN"
],
"ec-code":[
"3.2.2.9",
"3.2.2.16"
],
"kegg.reaction":[
"R01401"
],
"metanetx.reaction":[
"MNXR101744"
],
"rhea":[
"13620",
"13619",
"13617",
"13618"
],
"sabiork":[
"1593"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01021"
]
}
},
{
"id":"MTHFC",
"name":"Methenyltetrahydrofolate cyclohydrolase",
"metabolites":{
"10fthf_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"methf_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0542",
"subsystem":"Folate Metabolism",
"notes":{
"original_bigg_ids":[
"MTHFC"
]
},
"annotation":{
"bigg.reaction":[
"MTHFC"
],
"ec-code":[
"3.5.4.9",
"1.5.1.15"
],
"kegg.reaction":[
"R01655"
],
"metanetx.reaction":[
"MNXR101748"
],
"reactome.reaction":[
"R-DRE-6801462",
"R-SCE-6801462",
"R-OSA-6801462",
"R-SSC-6801462",
"R-ATH-6801462",
"R-MMU-6801462",
"R-RNO-6801462",
"R-CFA-6801462",
"R-DDI-6801462",
"R-GGA-6801462",
"R-HSA-6801462",
"R-TGU-6801462",
"R-BTA-6801462",
"R-DME-6801462",
"R-XTR-6801462"
],
"rhea":[
"23701",
"23700",
"23702",
"23703"
],
"sabiork":[
"74"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01211"
]
}
},
{
"id":"MTHFD",
"name":"Methylenetetrahydrofolate dehydrogenase (NADP)",
"metabolites":{
"methf_c":1.0,
"mlthf_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0542",
"subsystem":"Folate Metabolism",
"notes":{
"original_bigg_ids":[
"MTHFD"
]
},
"annotation":{
"bigg.reaction":[
"MTHFD"
],
"ec-code":[
"1.5.1.5"
],
"kegg.reaction":[
"R01220"
],
"metanetx.reaction":[
"MNXR101749"
],
"rhea":[
"22814",
"22813",
"22815",
"22812"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NI2abcpp",
"name":"Nickle (Ni+2) ABC transporter (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ni2_c":-1.0,
"ni2_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3576",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NI2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"NI2abcpp"
],
"ec-code":[
"3.6.3.24"
],
"metanetx.reaction":[
"MNXR101955"
],
"rhea":[
"15560#2",
"15559#2",
"15557#2",
"15558#2"
],
"sbo":"SBO:0000185"
}
},
{
"id":"NI2t3pp",
"name":"Nickle (Ni+2) transport out via proton antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ni2_c":-1.0,
"ni2_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4061 or STM0758",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NI2t3pp"
]
},
"annotation":{
"bigg.reaction":[
"NI2t3pp"
],
"metanetx.reaction":[
"MNXR101956"
],
"sbo":"SBO:0000185"
}
},
{
"id":"NI2tex",
"name":"Nickel transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ni2_e":-1.0,
"ni2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"NI2tex"
]
},
"annotation":{
"bigg.reaction":[
"NI2tex"
],
"biocyc":[
"META:TRANS-RXN-141B"
],
"metanetx.reaction":[
"MNXR101958"
],
"rhea":[
"29833",
"29831",
"29834",
"29832"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MTHFR2",
"name":"5,10-methylenetetrahydrofolate reductase (NADH)",
"metabolites":{
"5mthf_c":1.0,
"h_c":-2.0,
"mlthf_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4105",
"subsystem":"Folate Metabolism",
"notes":{
"original_bigg_ids":[
"MTHFR2"
]
},
"annotation":{
"bigg.reaction":[
"MTHFR2"
],
"ec-code":[
"1.5.1.20"
],
"kegg.reaction":[
"R07168"
],
"metanetx.reaction":[
"MNXR101751"
],
"rhea":[
"19822",
"19823",
"19821",
"19824"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NMNAT",
"name":"Nicotinamide-nucleotide adenylyltransferase",
"metabolites":{
"atp_c":-1.0,
"h_c":-1.0,
"nad_c":1.0,
"nmn_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0645 or STM4580_S",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NMNAT"
]
},
"annotation":{
"bigg.reaction":[
"NMNAT"
],
"biocyc":[
"META:2.7.7.1-RXN"
],
"ec-code":[
"2.7.7.18",
"2.7.7.1"
],
"kegg.reaction":[
"R00137"
],
"metanetx.reaction":[
"MNXR95841"
],
"reactome.reaction":[
"R-ATH-8939959",
"R-DRE-8939959",
"R-TGU-8939959",
"R-RNO-8939959",
"R-HSA-8939959",
"R-XTR-8939959",
"R-CFA-8939959",
"R-GGA-8939959",
"R-DDI-8939959",
"R-MMU-8939959",
"R-SSC-8939959",
"R-SCE-8939959",
"R-OSA-8939959",
"R-BTA-8939959",
"R-SPO-8939959",
"R-CEL-8939959"
],
"rhea":[
"21361",
"21362",
"21360",
"21363"
],
"sabiork":[
"706"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00105"
]
}
},
{
"id":"LPLIPAL2G120",
"name":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C12:0)",
"metabolites":{
"2agpg120_c":-1.0,
"ddca_c":1.0,
"g3pg_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2G120"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2G120"
],
"metanetx.reaction":[
"MNXR101190"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NMNDA",
"name":"Nicotinamide-nucleotide amidase",
"metabolites":{
"h2o_c":-1.0,
"nh4_c":1.0,
"nicrnt_c":1.0,
"nmn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NMNDA"
]
},
"annotation":{
"bigg.reaction":[
"NMNDA"
],
"biocyc":[
"META:NMNAMIDOHYDRO-RXN"
],
"ec-code":[
"3.5.1.42"
],
"kegg.reaction":[
"R02322"
],
"metanetx.reaction":[
"MNXR101969"
],
"rhea":[
"12402",
"12400",
"12403",
"12401"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01669"
]
}
},
{
"id":"NMNN",
"name":"NMN nucleosidase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"ncam_c":1.0,
"nmn_c":-1.0,
"r5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NMNN"
]
},
"annotation":{
"bigg.reaction":[
"NMNN"
],
"ec-code":[
"3.2.2.14"
],
"metanetx.reaction":[
"MNXR101971"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MTRI",
"name":"5-methylthioribose-1-phosphate isomerase",
"metabolites":{
"5mdr1p_c":-1.0,
"5mdru1p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"MTRI"
]
},
"annotation":{
"bigg.reaction":[
"MTRI"
],
"biocyc":[
"META:5.3.1.23-RXN"
],
"ec-code":[
"5.3.1.23"
],
"kegg.reaction":[
"R04420"
],
"metanetx.reaction":[
"MNXR101759"
],
"reactome.reaction":[
"R-BTA-1299507",
"R-RNO-1237096",
"R-GGA-1299507",
"R-DME-1299507",
"R-CEL-1237096",
"R-MMU-1237096",
"R-SSC-1299507",
"R-CFA-1237096",
"R-DDI-1299507",
"R-CFA-1299507",
"R-DRE-1237096",
"R-SPO-1237096",
"R-RNO-1299507",
"R-SPO-1299507",
"R-XTR-1237096",
"R-ATH-1299507",
"R-OSA-1237096",
"R-DME-1237096",
"R-SCE-1237096",
"R-HSA-1237096",
"R-DRE-1299507",
"R-GGA-1237096",
"R-SCE-1299507",
"R-CEL-1299507",
"R-DDI-1237096",
"R-OSA-1299507",
"R-MMU-1299507",
"R-HSA-1299507",
"R-SSC-1237096",
"R-XTR-1299507",
"R-BTA-1237096",
"R-ATH-1237096"
],
"rhea":[
"19991",
"19992",
"19990",
"19989"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03057"
]
}
},
{
"id":"MTRK",
"name":"5-methylthioribose kinase",
"metabolites":{
"5mdr1p_c":1.0,
"5mtr_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"MTRK"
]
},
"annotation":{
"bigg.reaction":[
"MTRK"
],
"biocyc":[
"META:5-METHYLTHIORIBOSE-KINASE-RXN"
],
"ec-code":[
"2.7.1.100"
],
"kegg.reaction":[
"R04143"
],
"metanetx.reaction":[
"MNXR101760"
],
"rhea":[
"22315",
"22312",
"22314",
"22313"
],
"sabiork":[
"3864"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02894"
]
}
},
{
"id":"MTRPOX",
"name":"N-methyltryptophan oxidase",
"metabolites":{
"Nmtrp_c":-1.0,
"fald_c":1.0,
"h2o2_c":1.0,
"h2o_c":-1.0,
"o2_c":-1.0,
"trp__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1160",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"MTRPOX"
]
},
"annotation":{
"bigg.reaction":[
"MTRPOX"
],
"biocyc":[
"META:RXN0-301"
],
"ec-code":[
"1.5.3.2"
],
"metanetx.reaction":[
"MNXR101761"
],
"rhea":[
"28009",
"28008",
"28006",
"28007"
],
"sabiork":[
"7294"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08965"
]
}
},
{
"id":"NMNPtpp",
"name":"NMN permease (periplasm)",
"metabolites":{
"nmn_c":1.0,
"nmn_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0757",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"NMNPtpp"
]
},
"annotation":{
"bigg.reaction":[
"NMNPtpp"
],
"metanetx.reaction":[
"MNXR101972"
],
"rhea":[
"28485",
"28483",
"28482",
"28484"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08997",
"rxn08995",
"rxn10181"
]
}
},
{
"id":"N2Otex",
"name":"Nitrious oxide transport via diffusion (extracellular to periplasm)",
"metabolites":{
"n2o_e":-1.0,
"n2o_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"N2Otex"
]
},
"annotation":{
"bigg.reaction":[
"N2Otex"
],
"metanetx.reaction":[
"MNXR101797"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08966",
"rxn08967"
]
}
},
{
"id":"NMNt7pp",
"name":"NMN transport via NMN glycohydrolase (periplasm)",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"ncam_c":1.0,
"nmn_p":-1.0,
"r5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"NMNt7pp"
]
},
"annotation":{
"bigg.reaction":[
"NMNt7pp"
],
"ec-code":[
"3.2.2.14"
],
"metanetx.reaction":[
"MNXR101974"
],
"sbo":"SBO:0000185"
}
},
{
"id":"LPLIPAL2G140",
"name":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:0)",
"metabolites":{
"2agpg140_c":-1.0,
"g3pg_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ttdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2G140"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2G140"
],
"metanetx.reaction":[
"MNXR101191"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NMNtex",
"name":"NMN transport via diffusion (extracellular to periplasm)",
"metabolites":{
"nmn_e":-1.0,
"nmn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"NMNtex"
]
},
"annotation":{
"bigg.reaction":[
"NMNtex"
],
"metanetx.reaction":[
"MNXR101972"
],
"rhea":[
"28485",
"28483",
"28482",
"28484"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08997",
"rxn08995",
"rxn10181"
]
}
},
{
"id":"NNAM",
"name":"Nicotinamidase",
"metabolites":{
"h2o_c":-1.0,
"nac_c":1.0,
"ncam_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1293",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NNAM"
]
},
"annotation":{
"bigg.reaction":[
"NNAM"
],
"biocyc":[
"META:NICOTINAMID-RXN"
],
"ec-code":[
"3.5.1.19"
],
"kegg.reaction":[
"R01268"
],
"metanetx.reaction":[
"MNXR101977"
],
"rhea":[
"14545",
"14547",
"14546",
"14548"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00938"
]
}
},
{
"id":"NNATr",
"name":"Nicotinate-nucleotide adenylyltransferase",
"metabolites":{
"atp_c":-1.0,
"dnad_c":1.0,
"h_c":-1.0,
"nicrnt_c":-1.0,
"ppi_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0645",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NNATr"
]
},
"annotation":{
"bigg.reaction":[
"NNATr"
],
"biocyc":[
"META:NICONUCADENYLYLTRAN-RXN"
],
"ec-code":[
"2.7.7.18",
"2.7.7.1"
],
"kegg.reaction":[
"R03005"
],
"metanetx.reaction":[
"MNXR101978"
],
"reactome.reaction":[
"R-MMU-197235",
"R-SCE-200474",
"R-BTA-200512",
"R-TGU-197235",
"R-TGU-200512",
"R-DDI-197235",
"R-HSA-200512",
"R-HSA-200474",
"R-ATH-197235",
"R-BTA-197235",
"R-HSA-197235",
"R-CEL-197235",
"R-ATH-200512",
"R-CFA-200512",
"R-RNO-197235",
"R-XTR-197235",
"R-DME-200512",
"R-XTR-200512",
"R-TGU-200474",
"R-MMU-200512",
"R-DDI-200512",
"R-SCE-200512",
"R-BTA-200474",
"R-RNO-200474",
"R-SCE-197235",
"R-OSA-200512",
"R-CFA-197235",
"R-ATH-200474",
"R-SSC-200512",
"R-SPO-197235",
"R-SPO-200474",
"R-GGA-200474",
"R-GGA-197235",
"R-SPO-200512",
"R-DME-200474",
"R-SSC-200474",
"R-OSA-197235",
"R-OSA-200474",
"R-RNO-200512",
"R-DRE-197235",
"R-GGA-200512",
"R-MMU-200474",
"R-CFA-200474",
"R-DRE-200474",
"R-DDI-200474",
"R-SSC-197235",
"R-DRE-200512"
],
"rhea":[
"22863",
"22861",
"22862",
"22860"
],
"sabiork":[
"2857"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02155"
]
}
},
{
"id":"N2Otpp",
"name":"Nitrious oxide transport (diffusion)",
"metabolites":{
"n2o_c":1.0,
"n2o_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"N2Otpp"
]
},
"annotation":{
"bigg.reaction":[
"N2Otpp"
],
"metanetx.reaction":[
"MNXR101797"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08966",
"rxn08967"
]
}
},
{
"id":"NACODA",
"name":"N-acetylornithine deacetylase",
"metabolites":{
"ac_c":1.0,
"acg5sa_c":-1.0,
"glu5sa_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4120",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"NACODA"
]
},
"annotation":{
"bigg.reaction":[
"NACODA"
],
"metanetx.reaction":[
"MNXR101860"
],
"rhea":[
"30505",
"30503",
"30504",
"30506"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08968"
]
}
},
{
"id":"NACtex",
"name":"Nicotinic acid transport via diffusion (extracellular to periplasm)",
"metabolites":{
"nac_e":-1.0,
"nac_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"NACtex"
]
},
"annotation":{
"bigg.reaction":[
"NACtex"
],
"metanetx.reaction":[
"MNXR101808"
],
"reactome.reaction":[
"R-TGU-8869603",
"R-BTA-8869603",
"R-XTR-8869603",
"R-CFA-8869603",
"R-GGA-8869603",
"R-RNO-8869603",
"R-HSA-8869603",
"R-DME-8869603",
"R-SSC-8869603",
"R-MMU-8869603",
"R-DRE-8869603"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08970",
"rxn05310",
"rxn08969"
]
}
},
{
"id":"NACtpp",
"name":"Nicotinic acid uptake (periplasm)",
"metabolites":{
"nac_c":1.0,
"nac_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"NACtpp"
]
},
"annotation":{
"bigg.reaction":[
"NACtpp"
],
"metanetx.reaction":[
"MNXR101808"
],
"reactome.reaction":[
"R-TGU-8869603",
"R-BTA-8869603",
"R-XTR-8869603",
"R-CFA-8869603",
"R-GGA-8869603",
"R-RNO-8869603",
"R-HSA-8869603",
"R-DME-8869603",
"R-SSC-8869603",
"R-MMU-8869603",
"R-DRE-8869603"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08970",
"rxn05310",
"rxn08969"
]
}
},
{
"id":"NADDP",
"name":"NAD diphosphatase",
"metabolites":{
"amp_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nmn_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2427 or STM4166",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NADDP"
]
},
"annotation":{
"bigg.reaction":[
"NADDP"
],
"biocyc":[
"META:NADPYROPHOSPHAT-RXN"
],
"ec-code":[
"3.6.1.22",
"3.6.1.9"
],
"kegg.reaction":[
"R00103"
],
"metanetx.reaction":[
"MNXR101861"
],
"rhea":[
"11802",
"11800",
"11801",
"11803"
],
"sabiork":[
"684"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00076",
"rxn05823"
]
}
},
{
"id":"NADH10",
"name":"NADH dehydrogenase (menaquinone-8 & 0 protons)",
"metabolites":{
"h_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1211",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADH10"
]
},
"annotation":{
"bigg.reaction":[
"NADH10"
],
"metanetx.reaction":[
"MNXR101863"
],
"rhea":[
"29243",
"29246",
"29244",
"29245"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08971"
]
}
},
{
"id":"NADH16pp",
"name":"NADH dehydrogenase (ubiquinone-8 & 3 protons) (periplasm)",
"metabolites":{
"h_c":-4.0,
"h_p":3.0,
"nad_c":1.0,
"nadh_c":-1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2316_S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323_S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADH16pp"
]
},
"annotation":{
"bigg.reaction":[
"NADH16pp"
],
"ec-code":[
"1.6.5.3"
],
"metanetx.reaction":[
"MNXR101864"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08972"
]
}
},
{
"id":"NNDPR",
"name":"Nicotinate-nucleotide diphosphorylase (carboxylating)",
"metabolites":{
"co2_c":1.0,
"h_c":-2.0,
"nicrnt_c":1.0,
"ppi_c":1.0,
"prpp_c":-1.0,
"quln_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0145",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NNDPR"
]
},
"annotation":{
"bigg.reaction":[
"NNDPR"
],
"biocyc":[
"META:QUINOPRIBOTRANS-RXN"
],
"ec-code":[
"2.4.2.19"
],
"kegg.reaction":[
"R03348"
],
"metanetx.reaction":[
"MNXR101980"
],
"reactome.reaction":[
"R-CFA-197268",
"R-HSA-197268",
"R-SSC-197268",
"R-RNO-197268",
"R-XTR-197268",
"R-MMU-197268",
"R-ATH-197268",
"R-OSA-197268",
"R-SCE-197268",
"R-BTA-197268",
"R-DDI-197268",
"R-TGU-197268"
],
"rhea":[
"12735",
"12733",
"12734",
"12736"
],
"sabiork":[
"3155"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02402"
]
}
},
{
"id":"NO2t2rpp",
"name":"Nitrite transport in via proton symport, reversible (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"no2_c":1.0,
"no2_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1765 or STM3476",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NO2t2rpp"
]
},
"annotation":{
"bigg.reaction":[
"NO2t2rpp"
],
"metanetx.reaction":[
"MNXR101984"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05625",
"rxn08998"
]
}
},
{
"id":"NO2tex",
"name":"Nitrite transport via diffusion (extracellular to periplasm)",
"metabolites":{
"no2_e":-1.0,
"no2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"NO2tex"
]
},
"annotation":{
"bigg.reaction":[
"NO2tex"
],
"biocyc":[
"META:TRANS-RXN-137"
],
"metanetx.reaction":[
"MNXR101912"
],
"rhea":[
"28983",
"28986",
"28984",
"28985"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10823",
"rxn08999"
]
}
},
{
"id":"NO3R1bpp",
"name":"Nitrate reductase (Ubiquinol-8)",
"metabolites":{
"h2o_p":1.0,
"no2_p":1.0,
"no3_p":-1.0,
"q8_c":1.0,
"q8h2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2256 and STM2259 and STM2255 and STM2258 and STM2257",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NO3R1bpp"
]
},
"annotation":{
"bigg.reaction":[
"NO3R1bpp"
],
"metanetx.reaction":[
"MNXR101987"
],
"rhea":[
"29126",
"29125",
"29123",
"29124"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09000"
]
}
},
{
"id":"NO3R1pp",
"name":"Nitrate reductase (Ubiquinol-8) (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h_c":-2.0,
"h_p":2.0,
"no2_c":1.0,
"no3_c":-1.0,
"q8_c":1.0,
"q8h2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1580 and STM1579 and STM1578 and STM1577) or (STM1764 and STM1763 and STM1762 and STM1761)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NO3R1pp"
]
},
"annotation":{
"bigg.reaction":[
"NO3R1pp"
],
"metanetx.reaction":[
"MNXR101986"
],
"rhea":[
"29149#1",
"29148#1",
"29150#1",
"29147#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09001",
"rxn10120"
]
}
},
{
"id":"NO3R2bpp",
"name":"Nitrate reductase (Menaquinol-8) (periplasm)",
"metabolites":{
"h2o_p":1.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"no2_p":1.0,
"no3_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2255 and STM2256 and STM2259 and STM2260",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NO3R2bpp"
]
},
"annotation":{
"bigg.reaction":[
"NO3R2bpp"
],
"ec-code":[
"1.7.99.4"
],
"metanetx.reaction":[
"MNXR101989"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09002"
]
}
},
{
"id":"NADH17pp",
"name":"NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm)",
"metabolites":{
"h_c":-4.0,
"h_p":3.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2316_S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323_S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADH17pp"
]
},
"annotation":{
"bigg.reaction":[
"NADH17pp"
],
"ec-code":[
"1.6.5.3"
],
"metanetx.reaction":[
"MNXR101865"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08973"
]
}
},
{
"id":"NADH18pp",
"name":"NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm)",
"metabolites":{
"2dmmq8_c":-1.0,
"2dmmql8_c":1.0,
"h_c":-4.0,
"h_p":3.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2316_S and STM2317 and STM2318 and STM2319 and STM2320 and STM2321 and STM2322 and STM2323_S and STM2324 and STM2325 and STM2326 and STM2327 and STM2328",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NADH18pp"
]
},
"annotation":{
"bigg.reaction":[
"NADH18pp"
],
"ec-code":[
"1.6.5.3"
],
"metanetx.reaction":[
"MNXR101866"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08974"
]
}
},
{
"id":"NO3R2pp",
"name":"Nitrate reductase (Menaquinol-8) (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h_c":-2.0,
"h_p":2.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"no2_c":1.0,
"no3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1580 and STM1579 and STM1578 and STM1577) or (STM1764 and STM1763 and STM1762 and STM1761)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NO3R2pp"
]
},
"annotation":{
"bigg.reaction":[
"NO3R2pp"
],
"metanetx.reaction":[
"MNXR101988"
],
"rhea":[
"29141#1",
"29142#1",
"29140#1",
"29139#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09003",
"rxn10121"
]
}
},
{
"id":"LPLIPAL2G141",
"name":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C14:1)",
"metabolites":{
"2agpg141_c":-1.0,
"g3pg_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ttdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2G141"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2G141"
],
"metanetx.reaction":[
"MNXR101192"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NO3t7pp",
"name":"Nitrate transport in via nitrite antiport (periplasm)",
"metabolites":{
"no2_c":-1.0,
"no2_p":1.0,
"no3_c":1.0,
"no3_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1765 or STM1576",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NO3t7pp"
]
},
"annotation":{
"bigg.reaction":[
"NO3t7pp"
],
"biocyc":[
"META:TRANS-RXN0-239"
],
"metanetx.reaction":[
"MNXR101995"
],
"rhea":[
"28746",
"28743",
"28744",
"28745"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09004",
"rxn10177"
]
}
},
{
"id":"NO3tex",
"name":"Nitrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"no3_e":-1.0,
"no3_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM2267 or STM1473",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"NO3tex"
]
},
"annotation":{
"bigg.reaction":[
"NO3tex"
],
"metanetx.reaction":[
"MNXR101992"
],
"rhea":[
"34924",
"34926",
"34923",
"34925"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09005",
"rxn10935"
]
}
},
{
"id":"NODOx",
"name":"Nitric oxide dioxygenase",
"metabolites":{
"h_c":1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"no3_c":2.0,
"no_c":-2.0,
"o2_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2556",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NODOx"
]
},
"annotation":{
"bigg.reaction":[
"NODOx"
],
"ec-code":[
"1.14.12.17"
],
"kegg.reaction":[
"R05724"
],
"metanetx.reaction":[
"MNXR101996"
],
"rhea":[
"19472",
"19469",
"19470",
"19471"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NTD12pp",
"name":"5'-nucleotidase (dIMP) (periplasm)",
"metabolites":{
"dimp_p":-1.0,
"din_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494 or STM4249",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD12pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD12pp"
],
"metanetx.reaction":[
"MNXR102031"
],
"rhea":[
"29386",
"29384",
"29383",
"29385"
],
"sabiork":[
"11288"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09010"
]
}
},
{
"id":"NODOy",
"name":"Nitric oxide dioxygenase",
"metabolites":{
"h_c":1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"no3_c":2.0,
"no_c":-2.0,
"o2_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2556",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NODOy"
]
},
"annotation":{
"bigg.reaction":[
"NODOy"
],
"ec-code":[
"1.14.12.17"
],
"kegg.reaction":[
"R05725"
],
"metanetx.reaction":[
"MNXR101997"
],
"rhea":[
"19465",
"19467",
"19466",
"19468"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LPLIPAL2G160",
"name":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:0)",
"metabolites":{
"2agpg160_c":-1.0,
"g3pg_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2G160"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2G160"
],
"metanetx.reaction":[
"MNXR101193"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NOtex",
"name":"Nitric oxide transport via diffusion (extracellular to periplasm)",
"metabolites":{
"no_e":-1.0,
"no_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"NOtex"
]
},
"annotation":{
"bigg.reaction":[
"NOtex"
],
"metanetx.reaction":[
"MNXR101998"
],
"sbo":"SBO:0000185"
}
},
{
"id":"NTD1pp",
"name":"5'-nucleotidase (dUMP)",
"metabolites":{
"dump_p":-1.0,
"duri_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494 or STM4249",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD1pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD1pp"
],
"biocyc":[
"META:RXN-14143"
],
"ec-code":[
"3.1.3.5",
"3.1.3.89"
],
"kegg.reaction":[
"R02102"
],
"metanetx.reaction":[
"MNXR102028"
],
"rhea":[
"29358",
"29355",
"29357",
"29356"
],
"sabiork":[
"501"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01521"
]
}
},
{
"id":"NTD2",
"name":"5'-nucleotidase (UMP)",
"metabolites":{
"h2o_c":-1.0,
"pi_c":1.0,
"ump_c":-1.0,
"uri_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4559_S or STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD2"
]
},
"annotation":{
"bigg.reaction":[
"NTD2"
],
"biocyc":[
"META:RXN-14025"
],
"ec-code":[
"3.1.3.5"
],
"kegg.reaction":[
"R00963"
],
"metanetx.reaction":[
"MNXR102032"
],
"rhea":[
"29362",
"29360",
"29361",
"29359"
],
"sabiork":[
"210"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00708"
]
}
},
{
"id":"NTD2pp",
"name":"5'-nucleotidase (UMP)",
"metabolites":{
"h2o_p":-1.0,
"pi_p":1.0,
"ump_p":-1.0,
"uri_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249 or STM0494",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD2pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD2pp"
],
"biocyc":[
"META:RXN-14025"
],
"ec-code":[
"3.1.3.5"
],
"kegg.reaction":[
"R00963"
],
"metanetx.reaction":[
"MNXR102032"
],
"rhea":[
"29362",
"29360",
"29361",
"29359"
],
"sabiork":[
"210"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00708"
]
}
},
{
"id":"NOtpp",
"name":"NO transport (diffusion)",
"metabolites":{
"no_c":1.0,
"no_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NOtpp"
]
},
"annotation":{
"bigg.reaction":[
"NOtpp"
],
"metanetx.reaction":[
"MNXR101998"
],
"sbo":"SBO:0000185"
}
},
{
"id":"LPLIPAL2G161",
"name":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C16:1)",
"metabolites":{
"2agpg161_c":-1.0,
"g3pg_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"hdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2G161"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2G161"
],
"metanetx.reaction":[
"MNXR101194"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NPHS",
"name":"Naphthoate synthase",
"metabolites":{
"coa_c":1.0,
"dhna_c":1.0,
"sbzcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2307",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NPHS"
]
},
"annotation":{
"bigg.reaction":[
"NPHS"
],
"ec-code":[
"4.1.3.36"
],
"kegg.reaction":[
"R04150"
],
"metanetx.reaction":[
"MNXR102012"
],
"rhea":[
"15526",
"15528",
"15525",
"15527"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02898"
]
}
},
{
"id":"NTD1",
"name":"5'-nucleotidase (dUMP)",
"metabolites":{
"dump_c":-1.0,
"duri_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2332 or STM2927 or STM4559_S",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD1"
]
},
"annotation":{
"bigg.reaction":[
"NTD1"
],
"biocyc":[
"META:RXN-14143"
],
"ec-code":[
"3.1.3.5",
"3.1.3.89"
],
"kegg.reaction":[
"R02102"
],
"metanetx.reaction":[
"MNXR102028"
],
"rhea":[
"29358",
"29355",
"29357",
"29356"
],
"sabiork":[
"501"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01521"
]
}
},
{
"id":"NTD3",
"name":"5'-nucleotidase (dCMP)",
"metabolites":{
"dcmp_c":-1.0,
"dcyt_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2927 or STM2332",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD3"
]
},
"annotation":{
"bigg.reaction":[
"NTD3"
],
"biocyc":[
"META:RXN0-5292"
],
"ec-code":[
"3.1.3.5",
"3.1.3.89"
],
"kegg.reaction":[
"R01664"
],
"metanetx.reaction":[
"MNXR102033"
],
"rhea":[
"29364",
"29365",
"29366",
"29363"
],
"sabiork":[
"480"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01218"
]
}
},
{
"id":"NTD3pp",
"name":"5'-nucleotidase (dCMP)",
"metabolites":{
"dcmp_p":-1.0,
"dcyt_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494 or STM4249",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD3pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD3pp"
],
"biocyc":[
"META:RXN0-5292"
],
"ec-code":[
"3.1.3.5",
"3.1.3.89"
],
"kegg.reaction":[
"R01664"
],
"metanetx.reaction":[
"MNXR102033"
],
"rhea":[
"29364",
"29365",
"29366",
"29363"
],
"sabiork":[
"480"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01218"
]
}
},
{
"id":"NTD4",
"name":"5'-nucleotidase (CMP)",
"metabolites":{
"cmp_c":-1.0,
"cytd_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD4"
]
},
"annotation":{
"bigg.reaction":[
"NTD4"
],
"biocyc":[
"META:RXN-14026"
],
"ec-code":[
"3.1.3.5",
"3.1.3.91"
],
"kegg.reaction":[
"R00511"
],
"metanetx.reaction":[
"MNXR102034"
],
"rhea":[
"29370",
"29368",
"29369",
"29367"
],
"sabiork":[
"211"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00363"
]
}
},
{
"id":"NTD4pp",
"name":"5'-nucleotidase (CMP)",
"metabolites":{
"cmp_p":-1.0,
"cytd_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249 or STM0494",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD4pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD4pp"
],
"biocyc":[
"META:RXN-14026"
],
"ec-code":[
"3.1.3.5",
"3.1.3.91"
],
"kegg.reaction":[
"R00511"
],
"metanetx.reaction":[
"MNXR102034"
],
"rhea":[
"29370",
"29368",
"29369",
"29367"
],
"sabiork":[
"211"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00363"
]
}
},
{
"id":"NTD10",
"name":"5'-nucleotidase (XMP)",
"metabolites":{
"h2o_c":-1.0,
"pi_c":1.0,
"xmp_c":-1.0,
"xtsn_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD10"
]
},
"annotation":{
"bigg.reaction":[
"NTD10"
],
"biocyc":[
"META:XMPXAN-RXN"
],
"ec-code":[
"3.1.3.5"
],
"kegg.reaction":[
"R02719"
],
"metanetx.reaction":[
"MNXR102029"
],
"rhea":[
"28532",
"28530",
"28531",
"28533"
],
"sabiork":[
"129"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01961"
]
}
},
{
"id":"NTD10pp",
"name":"5'-nucleotidase (XMP)",
"metabolites":{
"h2o_p":-1.0,
"pi_p":1.0,
"xmp_p":-1.0,
"xtsn_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494 or STM4249",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD10pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD10pp"
],
"biocyc":[
"META:XMPXAN-RXN"
],
"ec-code":[
"3.1.3.5"
],
"kegg.reaction":[
"R02719"
],
"metanetx.reaction":[
"MNXR102029"
],
"rhea":[
"28532",
"28530",
"28531",
"28533"
],
"sabiork":[
"129"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01961"
]
}
},
{
"id":"NTD11",
"name":"5'-nucleotidase (IMP)",
"metabolites":{
"h2o_c":-1.0,
"imp_c":-1.0,
"ins_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD11"
]
},
"annotation":{
"bigg.reaction":[
"NTD11"
],
"biocyc":[
"META:RXN-7607"
],
"ec-code":[
"3.1.3.5",
"3.1.3.99"
],
"kegg.reaction":[
"R01126"
],
"metanetx.reaction":[
"MNXR102030"
],
"reactome.reaction":[
"R-GGA-421179"
],
"rhea":[
"27721",
"27718",
"27720",
"27719"
],
"sabiork":[
"124"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00831"
]
}
},
{
"id":"NTD11pp",
"name":"5'-nucleotidase (IMP)",
"metabolites":{
"h2o_p":-1.0,
"imp_p":-1.0,
"ins_p":1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249 or STM0494",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD11pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD11pp"
],
"biocyc":[
"META:RXN-7607"
],
"ec-code":[
"3.1.3.5",
"3.1.3.99"
],
"kegg.reaction":[
"R01126"
],
"metanetx.reaction":[
"MNXR102030"
],
"reactome.reaction":[
"R-GGA-421179"
],
"rhea":[
"27721",
"27718",
"27720",
"27719"
],
"sabiork":[
"124"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00831"
]
}
},
{
"id":"NTD5",
"name":"5'-nucleotidase (dTMP)",
"metabolites":{
"dtmp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0,
"thymd_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2332 or STM2927 or STM4559_S",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD5"
]
},
"annotation":{
"bigg.reaction":[
"NTD5"
],
"biocyc":[
"META:THYMIDYLATE-5-PHOSPHATASE-RXN"
],
"ec-code":[
"3.1.3.35",
"3.1.3.89",
"3.1.3.5"
],
"kegg.reaction":[
"R01569"
],
"metanetx.reaction":[
"MNXR102035"
],
"rhea":[
"11081",
"11083",
"11082",
"11080"
],
"sabiork":[
"479"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01145"
]
}
},
{
"id":"NTD12",
"name":"5'-nucleotidase (dIMP)",
"metabolites":{
"dimp_c":-1.0,
"din_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2332 or STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD12"
]
},
"annotation":{
"bigg.reaction":[
"NTD12"
],
"metanetx.reaction":[
"MNXR102031"
],
"rhea":[
"29386",
"29384",
"29383",
"29385"
],
"sabiork":[
"11288"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09010"
]
}
},
{
"id":"NTD5pp",
"name":"5'-nucleotidase (dTMP)",
"metabolites":{
"dtmp_p":-1.0,
"h2o_p":-1.0,
"pi_p":1.0,
"thymd_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494 or STM4249",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD5pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD5pp"
],
"biocyc":[
"META:THYMIDYLATE-5-PHOSPHATASE-RXN"
],
"ec-code":[
"3.1.3.35",
"3.1.3.89",
"3.1.3.5"
],
"kegg.reaction":[
"R01569"
],
"metanetx.reaction":[
"MNXR102035"
],
"rhea":[
"11081",
"11083",
"11082",
"11080"
],
"sabiork":[
"479"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01145"
]
}
},
{
"id":"LPLIPAL2G180",
"name":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:0)",
"metabolites":{
"2agpg180_c":-1.0,
"g3pg_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ocdca_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2G180"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2G180"
],
"metanetx.reaction":[
"MNXR101195"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NTD6",
"name":"5'-nucleotidase (dAMP)",
"metabolites":{
"dad_2_c":1.0,
"damp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2332 or STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD6"
]
},
"annotation":{
"bigg.reaction":[
"NTD6"
],
"biocyc":[
"META:RXN-14161"
],
"ec-code":[
"3.1.3.5",
"3.1.3.89"
],
"kegg.reaction":[
"R02088"
],
"metanetx.reaction":[
"MNXR102036"
],
"rhea":[
"29371",
"29374",
"29372",
"29373"
],
"sabiork":[
"282"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13134",
"rxn01507"
]
}
},
{
"id":"NTD6pp",
"name":"5'-nucleotidase (dAMP)",
"metabolites":{
"dad_2_p":1.0,
"damp_p":-1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249 or STM0494",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD6pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD6pp"
],
"biocyc":[
"META:RXN-14161"
],
"ec-code":[
"3.1.3.5",
"3.1.3.89"
],
"kegg.reaction":[
"R02088"
],
"metanetx.reaction":[
"MNXR102036"
],
"rhea":[
"29371",
"29374",
"29372",
"29373"
],
"sabiork":[
"282"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13134",
"rxn01507"
]
}
},
{
"id":"LPLIPAL2G181",
"name":"Lysophospholipase L2 (2-acylglycerophosphoglycerol, n-C18:1)",
"metabolites":{
"2agpg181_c":-1.0,
"g3pg_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ocdcea_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3961",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"LPLIPAL2G181"
]
},
"annotation":{
"bigg.reaction":[
"LPLIPAL2G181"
],
"metanetx.reaction":[
"MNXR101196"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NTD7",
"name":"5'-nucleotidase (AMP)",
"metabolites":{
"adn_c":1.0,
"amp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD7"
]
},
"annotation":{
"bigg.reaction":[
"NTD7"
],
"biocyc":[
"META:AMP-DEPHOSPHORYLATION-RXN"
],
"ec-code":[
"3.1.3.5"
],
"kegg.reaction":[
"R00183"
],
"metanetx.reaction":[
"MNXR102037"
],
"reactome.reaction":[
"R-CFA-109415",
"R-XTR-109415",
"R-GGA-109415",
"R-DRE-109415",
"R-BTA-109415",
"R-SSC-109415",
"R-HSA-109415",
"R-RNO-109415",
"R-TGU-109415",
"R-MMU-109415"
],
"rhea":[
"29376",
"29378",
"29375",
"29377"
],
"sabiork":[
"295"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00132"
]
}
},
{
"id":"NTD7pp",
"name":"5'-nucleotidase (AMP)",
"metabolites":{
"adn_p":1.0,
"amp_p":-1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494 or STM4249",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD7pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD7pp"
],
"biocyc":[
"META:AMP-DEPHOSPHORYLATION-RXN"
],
"ec-code":[
"3.1.3.5"
],
"kegg.reaction":[
"R00183"
],
"metanetx.reaction":[
"MNXR102037"
],
"reactome.reaction":[
"R-CFA-109415",
"R-XTR-109415",
"R-GGA-109415",
"R-DRE-109415",
"R-BTA-109415",
"R-SSC-109415",
"R-HSA-109415",
"R-RNO-109415",
"R-TGU-109415",
"R-MMU-109415"
],
"rhea":[
"29376",
"29378",
"29375",
"29377"
],
"sabiork":[
"295"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00132"
]
}
},
{
"id":"NTD8",
"name":"5'-nucleotidase (dGMP)",
"metabolites":{
"dgmp_c":-1.0,
"dgsn_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2332 or STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD8"
]
},
"annotation":{
"bigg.reaction":[
"NTD8"
],
"biocyc":[
"META:RXN-14142"
],
"ec-code":[
"3.1.3.5",
"3.1.3.89"
],
"kegg.reaction":[
"R01968"
],
"metanetx.reaction":[
"MNXR102038"
],
"rhea":[
"29382",
"29380",
"29381",
"29379"
],
"sabiork":[
"304"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01445"
]
}
},
{
"id":"OPHBDC",
"name":"Octaprenyl-hydroxybenzoate decarboxylase",
"metabolites":{
"2oph_c":1.0,
"3ophb_c":-1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3978 or STM2356",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OPHBDC"
]
},
"annotation":{
"bigg.reaction":[
"OPHBDC"
],
"biocyc":[
"META:3-OCTAPRENYL-4-OHBENZOATE-DECARBOX-RXN"
],
"ec-code":[
"4.1.1.98"
],
"kegg.reaction":[
"R04986"
],
"metanetx.reaction":[
"MNXR102201"
],
"rhea":[
"27778",
"27780",
"27779",
"27781"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03393"
]
}
},
{
"id":"OPHHX",
"name":"2-Octaprenylphenol hydroxylase",
"metabolites":{
"2ohph_c":1.0,
"2oph_c":-1.0,
"o2_c":-0.5
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3972",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OPHHX"
]
},
"annotation":{
"bigg.reaction":[
"OPHHX"
],
"metanetx.reaction":[
"MNXR102203"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09044",
"rxn12225"
]
}
},
{
"id":"NTD8pp",
"name":"5'-nucleotidase (dGMP)",
"metabolites":{
"dgmp_p":-1.0,
"dgsn_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494 or STM4249",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD8pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD8pp"
],
"biocyc":[
"META:RXN-14142"
],
"ec-code":[
"3.1.3.5",
"3.1.3.89"
],
"kegg.reaction":[
"R01968"
],
"metanetx.reaction":[
"MNXR102038"
],
"rhea":[
"29382",
"29380",
"29381",
"29379"
],
"sabiork":[
"304"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01445"
]
}
},
{
"id":"LSERDHr",
"name":"L-serine dehydrogenase",
"metabolites":{
"2amsa_c":1.0,
"h_c":1.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1511",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"LSERDHr"
]
},
"annotation":{
"bigg.reaction":[
"LSERDHr"
],
"biocyc":[
"META:RXN0-2201"
],
"ec-code":[
"1.1.1.276"
],
"kegg.reaction":[
"R06126"
],
"metanetx.reaction":[
"MNXR101242"
],
"rhea":[
"21596",
"21599",
"21598",
"21597"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04137"
]
}
},
{
"id":"NTD9",
"name":"5'-nucleotidase (GMP)",
"metabolites":{
"gmp_c":-1.0,
"gsn_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2927",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD9"
]
},
"annotation":{
"bigg.reaction":[
"NTD9"
],
"biocyc":[
"META:RXN-7609"
],
"ec-code":[
"3.1.3.5"
],
"kegg.reaction":[
"R01227"
],
"metanetx.reaction":[
"MNXR100381"
],
"rhea":[
"27715",
"27716",
"27717",
"27714"
],
"sabiork":[
"186"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00913"
]
}
},
{
"id":"NTD9pp",
"name":"5'-nucleotidase (GMP)",
"metabolites":{
"gmp_p":-1.0,
"gsn_p":1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249 or STM0494",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTD9pp"
]
},
"annotation":{
"bigg.reaction":[
"NTD9pp"
],
"biocyc":[
"META:RXN-7609"
],
"ec-code":[
"3.1.3.5"
],
"kegg.reaction":[
"R01227"
],
"metanetx.reaction":[
"MNXR100381"
],
"rhea":[
"27715",
"27716",
"27717",
"27714"
],
"sabiork":[
"186"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00913"
]
}
},
{
"id":"OPHHX3",
"name":"2-Octaprenylphenol hydroxylase (anaerobic)",
"metabolites":{
"2ohph_c":1.0,
"2oph_c":-1.0,
"adp_c":2.0,
"atp_c":-2.0,
"h2o_c":-3.0,
"h_c":3.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pi_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OPHHX3"
]
},
"annotation":{
"bigg.reaction":[
"OPHHX3"
],
"metanetx.reaction":[
"MNXR102204"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09045"
]
}
},
{
"id":"ORNDC",
"name":"Ornithine Decarboxylase",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"orn_c":-1.0,
"ptrc_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3114 or STM0701",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"ORNDC"
]
},
"annotation":{
"bigg.reaction":[
"ORNDC"
],
"biocyc":[
"META:ORNDECARBOX-RXN"
],
"ec-code":[
"4.1.1.17"
],
"kegg.reaction":[
"R00670"
],
"metanetx.reaction":[
"MNXR102209"
],
"reactome.reaction":[
"R-MMU-70692",
"R-OSA-70692",
"R-PFA-70692",
"R-DME-70692",
"R-ATH-70692",
"R-CFA-70692",
"R-XTR-70692",
"R-RNO-70692",
"R-SPO-70692",
"R-GGA-70692",
"R-CEL-70692",
"R-SSC-70692",
"R-BTA-70692",
"R-DRE-70692",
"R-TGU-70692",
"R-DDI-70692",
"R-SCE-70692",
"R-HSA-70692"
],
"rhea":[
"22964",
"22967",
"22965",
"22966"
],
"sabiork":[
"1050"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00470"
]
}
},
{
"id":"ORNabcpp",
"name":"Ornithine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"orn_c":1.0,
"orn_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2355 and STM2352 and STM2351 and STM2353",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ORNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ORNabcpp"
],
"biocyc":[
"META:ABC-37-RXN"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR102222"
],
"rhea":[
"29883#1",
"29885#1",
"29886#1",
"29884#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09046",
"rxn05156"
]
}
},
{
"id":"NTP1",
"name":"Nucleoside-triphosphatase (ATP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0659 or STM4349",
"subsystem":"Biomass and maintenance functions",
"notes":{
"original_bigg_ids":[
"NTP1"
]
},
"annotation":{
"bigg.reaction":[
"NTP1"
],
"biocyc":[
"META:ATPASE-RXN"
],
"ec-code":[
"3.6.1.5",
"3.6.3.34",
"3.6.3.20",
"3.6.3.53",
"3.6.3.8",
"3.6.3.32",
"3.6.4.12",
"3.6.3.48",
"3.6.3.40",
"3.6.3.9",
"3.6.3.23",
"3.6.3.22",
"3.6.3.54",
"3.6.3.1",
"3.6.1.8",
"3.6.3.29",
"3.6.3.17",
"3.6.3.50",
"3.6.3.39",
"3.6.3.19",
"3.6.3.4",
"3.6.3.35",
"3.6.3.16",
"3.6.4.4",
"3.6.3.37",
"3.6.4.8",
"3.6.3.31",
"3.6.3.6",
"3.6.4.5",
"3.6.3.52",
"3.6.3.2",
"3.6.3.14",
"3.6.3.51",
"3.6.3.25",
"3.6.3.38",
"3.6.3.33",
"3.6.3.43",
"3.6.4.10",
"3.6.4.13",
"3.6.3.3",
"3.6.3.10",
"3.6.3.24",
"3.6.3.44",
"3.6.3.15",
"3.6.3.5",
"3.6.1.3",
"3.6.1.15",
"3.6.4.2",
"3.6.4.3",
"3.6.3.42",
"3.6.3.11",
"3.6.3.28",
"3.6.3.30",
"3.6.4.1",
"3.6.4.11",
"3.6.3.47",
"3.6.4.6",
"3.6.3.36",
"3.6.3.21",
"3.6.3.12",
"3.6.3.18",
"3.6.3.26",
"3.6.3.27",
"3.6.3.7",
"3.6.4.9",
"3.6.4.7",
"3.6.3.46",
"3.6.3.41",
"3.6.3.49"
],
"kegg.reaction":[
"R00086"
],
"metanetx.reaction":[
"MNXR96131"
],
"rhea":[
"13066",
"13065",
"13068",
"13067"
],
"sabiork":[
"75"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11300",
"rxn09694",
"rxn00062"
]
}
},
{
"id":"NTP10",
"name":"Nucleoside-triphosphatase (ITP)",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"idp_c":1.0,
"itp_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4584 or STM4349",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTP10"
]
},
"annotation":{
"bigg.reaction":[
"NTP10"
],
"biocyc":[
"META:RXN0-5073"
],
"ec-code":[
"3.6.1",
"3.6.1.5"
],
"kegg.reaction":[
"R00719"
],
"metanetx.reaction":[
"MNXR100892"
],
"rhea":[
"28331",
"28332",
"28333",
"28330"
],
"sabiork":[
"1090"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00513"
]
}
},
{
"id":"ORNtex",
"name":"Ornithine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"orn_e":-1.0,
"orn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"ORNtex"
]
},
"annotation":{
"bigg.reaction":[
"ORNtex"
],
"biocyc":[
"META:TRANS-RXN-230"
],
"metanetx.reaction":[
"MNXR102223"
],
"sabiork":[
"7986"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10824",
"rxn09048"
]
}
},
{
"id":"LYSDC",
"name":"Lysine decarboxylase",
"metabolites":{
"15dap_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"lys__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0234 or STM2559",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"LYSDC"
]
},
"annotation":{
"bigg.reaction":[
"LYSDC"
],
"biocyc":[
"META:LYSDECARBOX-RXN"
],
"ec-code":[
"4.1.1.18"
],
"kegg.reaction":[
"R00462"
],
"metanetx.reaction":[
"MNXR101256"
],
"rhea":[
"22353",
"22354",
"22352",
"22355"
],
"sabiork":[
"899"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00322"
]
}
},
{
"id":"OROTt2_2pp",
"name":"Orotate transport via proton symport (2 H) (periplasm)",
"metabolites":{
"h_c":2.0,
"h_p":-2.0,
"orot_c":1.0,
"orot_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3614",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"OROTt2_2pp"
]
},
"annotation":{
"bigg.reaction":[
"OROTt2_2pp"
],
"biocyc":[
"META:TRANS-RXN-121C"
],
"metanetx.reaction":[
"MNXR102229"
],
"rhea":[
"29349",
"29348",
"29347",
"29350"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09049"
]
}
},
{
"id":"NTP11",
"name":"Nucleoside-triphosphatase (dITP)",
"metabolites":{
"didp_c":1.0,
"ditp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4584",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTP11"
]
},
"annotation":{
"bigg.reaction":[
"NTP11"
],
"metanetx.reaction":[
"MNXR102040"
],
"rhea":[
"30862",
"30860",
"30859",
"30861"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09011"
]
}
},
{
"id":"NTP12",
"name":"Nucleoside-triphosphatase (XTP)",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"xdp_c":1.0,
"xtp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4584",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTP12"
]
},
"annotation":{
"bigg.reaction":[
"NTP12"
],
"biocyc":[
"META:RXN0-5074"
],
"ec-code":[
"3.6.1"
],
"metanetx.reaction":[
"MNXR102041"
],
"rhea":[
"28406",
"28409",
"28407",
"28408"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09012"
]
}
},
{
"id":"LYSTRS",
"name":"Lysyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"lys__L_c":-1.0,
"lystrna_c":1.0,
"ppi_c":1.0,
"trnalys_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3040",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"LYSTRS"
]
},
"annotation":{
"bigg.reaction":[
"LYSTRS"
],
"ec-code":[
"6.1.1.6"
],
"kegg.reaction":[
"R03658"
],
"metanetx.reaction":[
"MNXR101264"
],
"reactome.reaction":[
"R-HSA-380008",
"R-HSA-380233"
],
"sabiork":[
"414"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08857",
"rxn06442"
]
}
},
{
"id":"NTP3",
"name":"Nucleoside-triphosphatase (GTP)",
"metabolites":{
"gdp_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4349",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTP3"
]
},
"annotation":{
"bigg.reaction":[
"NTP3"
],
"biocyc":[
"META:RXN0-5462"
],
"ec-code":[
"3.6.1.5",
"3.6.5.5",
"3.6.1.15",
"3.6.5.3",
"3.6.5.1",
"3.6.5.2",
"3.6.5.6",
"3.6.5.4"
],
"kegg.reaction":[
"R00335"
],
"metanetx.reaction":[
"MNXR102043"
],
"rhea":[
"19669",
"19671",
"19672",
"19670"
],
"sabiork":[
"816"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00241"
]
}
},
{
"id":"NTP5",
"name":"Nucleoside-triphosphatase (CTP)",
"metabolites":{
"cdp_c":1.0,
"ctp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4349",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTP5"
]
},
"annotation":{
"bigg.reaction":[
"NTP5"
],
"biocyc":[
"META:RXN-12195"
],
"ec-code":[
"3.6.1.5",
"3.6.1.15"
],
"kegg.reaction":[
"R00569"
],
"metanetx.reaction":[
"MNXR102045"
],
"rhea":[
"29389",
"29387",
"29388",
"29390"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00408"
]
}
},
{
"id":"NTPP1",
"name":"Nucleoside triphosphate pyrophosphorylase (dgtp)",
"metabolites":{
"dgmp_c":1.0,
"dgtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2954 or STM0137",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP1"
]
},
"annotation":{
"bigg.reaction":[
"NTPP1"
],
"biocyc":[
"META:RXN0-385"
],
"ec-code":[
"3.6.1.-",
"3.6.1.19",
"3.6.1.9"
],
"kegg.reaction":[
"R01855"
],
"metanetx.reaction":[
"MNXR102049"
],
"rhea":[
"28364",
"28363",
"28362",
"28365"
],
"sabiork":[
"302"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01351"
]
}
},
{
"id":"NTPP10",
"name":"Nucleoside triphosphate pyrophosphorylase (ditp)",
"metabolites":{
"dimp_c":1.0,
"ditp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3103",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP10"
]
},
"annotation":{
"bigg.reaction":[
"NTPP10"
],
"biocyc":[
"META:RXN0-1602"
],
"ec-code":[
"3.6.1.66",
"3.6.1.-"
],
"kegg.reaction":[
"R03531"
],
"metanetx.reaction":[
"MNXR102050"
],
"reactome.reaction":[
"R-SPO-2509838",
"R-MMU-2509838",
"R-BTA-2509838",
"R-ATH-2509838",
"R-HSA-2509838",
"R-OSA-2509838",
"R-RNO-2509838",
"R-SSC-2509838",
"R-SCE-2509838",
"R-DRE-2509838",
"R-DDI-2509838",
"R-GGA-2509838",
"R-PFA-2509838",
"R-DME-2509838",
"R-CEL-2509838",
"R-CFA-2509838",
"R-TGU-2509838"
],
"rhea":[
"28343",
"28342",
"28344",
"28345"
],
"sabiork":[
"9408"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02518"
]
}
},
{
"id":"NTPP11",
"name":"Nucleoside triphosphate pyrophosphorylase (xtp)",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0,
"xmp_c":1.0,
"xtp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3103",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP11"
]
},
"annotation":{
"bigg.reaction":[
"NTPP11"
],
"biocyc":[
"META:RXN0-1603"
],
"ec-code":[
"3.6.1.66",
"3.6.1.-"
],
"kegg.reaction":[
"R02720"
],
"metanetx.reaction":[
"MNXR102051"
],
"reactome.reaction":[
"R-BTA-2509831",
"R-CFA-2509831",
"R-SPO-2509831",
"R-PFA-2509831",
"R-RNO-2509831",
"R-SSC-2509831",
"R-DRE-2509831",
"R-MMU-2509831",
"R-OSA-2509831",
"R-GGA-2509831",
"R-SCE-2509831",
"R-HSA-2509831",
"R-CEL-2509831",
"R-TGU-2509831",
"R-DME-2509831",
"R-ATH-2509831",
"R-DDI-2509831"
],
"rhea":[
"28613",
"28610",
"28612",
"28611"
],
"sabiork":[
"357"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01962"
]
}
},
{
"id":"NTPP2",
"name":"Nucleoside triphosphate pyrophosphorylase (gtp)",
"metabolites":{
"gmp_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0137 or STM2954",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP2"
]
},
"annotation":{
"bigg.reaction":[
"NTPP2"
],
"biocyc":[
"META:RXN-14140"
],
"ec-code":[
"3.6.1.8",
"3.6.1.-",
"3.6.1.9"
],
"kegg.reaction":[
"R00426"
],
"metanetx.reaction":[
"MNXR102052"
],
"rhea":[
"29391",
"29392",
"29393",
"29394"
],
"sabiork":[
"301"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00301"
]
}
},
{
"id":"OAAt2_2pp",
"name":"Oxaloacetate transport via proton symport 2 H  periplasm ",
"metabolites":{
"h_c":2.0,
"h_p":-2.0,
"oaa_c":1.0,
"oaa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3614",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"OAAt2_2pp"
]
},
"annotation":{
"bigg.reaction":[
"OAAt2_2pp"
],
"metanetx.reaction":[
"MNXR102101"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OROTtex",
"name":"Orotate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"orot_e":-1.0,
"orot_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1473 or STM0999 or STM0320 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"OROTtex"
]
},
"annotation":{
"bigg.reaction":[
"OROTtex"
],
"metanetx.reaction":[
"MNXR102230"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10908",
"rxn09050"
]
}
},
{
"id":"OAAtex",
"name":"Oxaloacetate transport via diffusion extracellular to periplasm ",
"metabolites":{
"oaa_e":-1.0,
"oaa_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1473 or STM0999 or STM0320 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"OAAtex"
]
},
"annotation":{
"bigg.reaction":[
"OAAtex"
],
"biocyc":[
"META:RXN-13407",
"META:TRANS-RXN-226"
],
"ec-code":[
"5.3.2.2"
],
"metanetx.reaction":[
"MNXR102100"
],
"sabiork":[
"13795"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13365"
]
}
},
{
"id":"ORPT",
"name":"Orotate phosphoribosyltransferase",
"metabolites":{
"orot5p_c":-1.0,
"orot_c":1.0,
"ppi_c":-1.0,
"prpp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3733",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"ORPT"
]
},
"annotation":{
"bigg.reaction":[
"ORPT"
],
"biocyc":[
"META:OROPRIBTRANS-RXN"
],
"ec-code":[
"2.4.2.10"
],
"kegg.reaction":[
"R01870"
],
"metanetx.reaction":[
"MNXR102231"
],
"reactome.reaction":[
"R-SSC-73567",
"R-CFA-73567",
"R-GGA-73567",
"R-PFA-73567",
"R-XTR-73567",
"R-BTA-73567",
"R-SCE-73567",
"R-CEL-73567",
"R-SPO-73567",
"R-DRE-73567",
"R-MMU-73567",
"R-GGA-419462",
"R-DDI-73567",
"R-HSA-73567",
"R-ATH-73567",
"R-TGU-73567",
"R-OSA-73567",
"R-DME-73567",
"R-RNO-73567"
],
"rhea":[
"10381",
"10383",
"10382",
"10380"
],
"sabiork":[
"401"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01362"
]
}
},
{
"id":"OXAMTC",
"name":"Oxamate transcarbamoylase",
"metabolites":{
"cbp_c":1.0,
"oxam_c":1.0,
"oxur_c":-1.0,
"pi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"OXAMTC"
]
},
"annotation":{
"bigg.reaction":[
"OXAMTC"
],
"biocyc":[
"META:OXAMATE-CARBAMOYLTRANSFERASE-RXN"
],
"ec-code":[
"2.1.3.5"
],
"kegg.reaction":[
"R02937"
],
"metanetx.reaction":[
"MNXR102236"
],
"rhea":[
"22986",
"22985",
"22984",
"22987"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02104"
]
}
},
{
"id":"OXGDC2",
"name":"2-oxoglutarate decarboxylase",
"metabolites":{
"akg_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"ssaltpp_c":1.0,
"thmpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2309",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OXGDC2"
]
},
"annotation":{
"bigg.reaction":[
"OXGDC2"
],
"ec-code":[
"4.1.1.71"
],
"metanetx.reaction":[
"MNXR102244"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00442"
]
}
},
{
"id":"P5CD",
"name":"1-pyrroline-5-carboxylate dehydrogenase",
"metabolites":{
"1pyr5c_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-2.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1124",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"P5CD"
]
},
"annotation":{
"bigg.reaction":[
"P5CD"
],
"biocyc":[
"META:PYRROLINECARBDEHYDROG-RXN"
],
"ec-code":[
"1.5.1.12",
"1.2.1.88"
],
"kegg.reaction":[
"R00707"
],
"metanetx.reaction":[
"MNXR102301"
],
"rhea":[
"16417",
"16418",
"16419",
"16420"
],
"sabiork":[
"1083"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00503"
]
}
},
{
"id":"P5CR",
"name":"Pyrroline-5-carboxylate reductase",
"metabolites":{
"1pyr5c_c":-1.0,
"h_c":-2.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"pro__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0386",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"P5CR"
]
},
"annotation":{
"bigg.reaction":[
"P5CR"
],
"ec-code":[
"1.5.1.2"
],
"kegg.reaction":[
"R01251"
],
"metanetx.reaction":[
"MNXR102302"
],
"reactome.reaction":[
"R-DDI-6783955",
"R-DRE-6783955",
"R-TGU-6783955",
"R-PFA-6783955",
"R-CEL-6783955",
"R-MMU-6783955",
"R-RNO-6783955",
"R-HSA-6783955",
"R-SCE-6783955",
"R-ATH-6783955",
"R-SPO-6783955",
"R-OSA-6783955",
"R-CFA-6783955",
"R-DME-6783955",
"R-GGA-6783955",
"R-BTA-6783955"
],
"rhea":[
"14111",
"14112",
"14109",
"14110"
],
"sabiork":[
"1470"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00931"
]
}
},
{
"id":"NTPP3",
"name":"Nucleoside triphosphate pyrophosphorylase (dctp)",
"metabolites":{
"dcmp_c":1.0,
"dctp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2954 or STM2295 or STM1301",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP3"
]
},
"annotation":{
"bigg.reaction":[
"NTPP3"
],
"biocyc":[
"META:DCTP-PYROPHOSPHATASE-RXN"
],
"ec-code":[
"3.6.1.9",
"3.6.1.12",
"3.6.1.65"
],
"kegg.reaction":[
"R01668"
],
"metanetx.reaction":[
"MNXR97203"
],
"rhea":[
"22637",
"22636",
"22639",
"22638"
],
"sabiork":[
"483"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01222"
]
}
},
{
"id":"NTPP4",
"name":"Nucleoside triphosphate pyrophosphorylase (ctp)",
"metabolites":{
"cmp_c":1.0,
"ctp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2954 or STM1301",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP4"
]
},
"annotation":{
"bigg.reaction":[
"NTPP4"
],
"biocyc":[
"META:RXN0-383"
],
"ec-code":[
"3.6.1.8",
"3.6.1.9",
"3.6.1.65"
],
"kegg.reaction":[
"R00515"
],
"metanetx.reaction":[
"MNXR102053"
],
"rhea":[
"27765",
"27763",
"27764",
"27762"
],
"sabiork":[
"454"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00367"
]
}
},
{
"id":"NTPP5",
"name":"Nucleoside triphosphate pyrophosphorylase (datp)",
"metabolites":{
"damp_c":1.0,
"datp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2954 or STM1900",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP5"
]
},
"annotation":{
"bigg.reaction":[
"NTPP5"
],
"biocyc":[
"META:RXN0-384"
],
"ec-code":[
"3.6.1.19",
"3.6.1.9"
],
"metanetx.reaction":[
"MNXR97173"
],
"rhea":[
"28336",
"28337",
"28335",
"28334"
],
"sabiork":[
"10433"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09013"
]
}
},
{
"id":"NTPP6",
"name":"Nucleoside triphosphate pyrophosphorylase (atp)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2954",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP6"
]
},
"annotation":{
"bigg.reaction":[
"NTPP6"
],
"biocyc":[
"META:ATP-PYROPHOSPHATASE-RXN"
],
"ec-code":[
"3.6.1.8",
"3.6.1.9"
],
"kegg.reaction":[
"R00087"
],
"metanetx.reaction":[
"MNXR102054"
],
"rhea":[
"14248",
"14247",
"14245",
"14246"
],
"sabiork":[
"245"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05822",
"rxn00063"
]
}
},
{
"id":"PA120abcpp",
"name":"Phosphatidate transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa120_c":-1.0,
"pa120_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA120abcpp"
],
"metanetx.reaction":[
"MNXR102304"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09053"
]
}
},
{
"id":"LYSabcpp",
"name":"L-lysine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"lys__L_c":1.0,
"lys__L_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2355 and STM2352 and STM2351 and STM2353",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"LYSabcpp"
]
},
"annotation":{
"bigg.reaction":[
"LYSabcpp"
],
"biocyc":[
"META:ABC-3-RXN"
],
"ec-code":[
"3.6.3.21"
],
"metanetx.reaction":[
"MNXR101265"
],
"rhea":[
"29887#1",
"29888#1",
"29890#1",
"29889#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05151",
"rxn08853"
]
}
},
{
"id":"PA140abcpp",
"name":"Phosphatidate transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa140_c":-1.0,
"pa140_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA140abcpp"
],
"metanetx.reaction":[
"MNXR102305"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09054"
]
}
},
{
"id":"PA141abcpp",
"name":"Phosphatidate transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa141_c":-1.0,
"pa141_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA141abcpp"
],
"metanetx.reaction":[
"MNXR102306"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09055"
]
}
},
{
"id":"NTPP7",
"name":"Nucleoside triphosphate pyrophosphorylase (dttp)",
"metabolites":{
"dtmp_c":1.0,
"dttp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2295 or STM2954",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP7"
]
},
"annotation":{
"bigg.reaction":[
"NTPP7"
],
"biocyc":[
"META:RXN0-5107"
],
"ec-code":[
"3.6.1.19",
"3.6.1.9"
],
"kegg.reaction":[
"R11323"
],
"metanetx.reaction":[
"MNXR97809"
],
"rhea":[
"28537",
"28534",
"28536",
"28535"
],
"sabiork":[
"10421"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09014"
]
}
},
{
"id":"NTPP8",
"name":"Nucleoside triphosphate pyrophosphorylase (utp)",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0,
"ump_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2954",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP8"
]
},
"annotation":{
"bigg.reaction":[
"NTPP8"
],
"biocyc":[
"META:RXN-14139"
],
"ec-code":[
"3.6.1.8",
"3.6.1.9"
],
"kegg.reaction":[
"R00662"
],
"metanetx.reaction":[
"MNXR102055"
],
"rhea":[
"29397",
"29398",
"29395",
"29396"
],
"sabiork":[
"202"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00463"
]
}
},
{
"id":"NTPP9",
"name":"Nucleoside triphosphate pyrophosphorylase (itp)",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"imp_c":1.0,
"itp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3103",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPP9"
]
},
"annotation":{
"bigg.reaction":[
"NTPP9"
],
"biocyc":[
"META:RXN0-6382"
],
"ec-code":[
"3.6.1.8",
"3.6.1.-",
"3.6.1.9"
],
"kegg.reaction":[
"R00720"
],
"metanetx.reaction":[
"MNXR102056"
],
"reactome.reaction":[
"R-CFA-2509827",
"R-DDI-2509827",
"R-RNO-2509827",
"R-SCE-2509827",
"R-PFA-2509827",
"R-TGU-2509827",
"R-HSA-2509827",
"R-ATH-2509827",
"R-DME-2509827",
"R-BTA-2509827",
"R-GGA-2509827",
"R-OSA-2509827",
"R-SPO-2509827",
"R-CEL-2509827",
"R-SSC-2509827",
"R-MMU-2509827",
"R-DRE-2509827"
],
"rhea":[
"29399",
"29402",
"29400",
"29401"
],
"sabiork":[
"297"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00514"
]
}
},
{
"id":"PA160abcpp",
"name":"Phosphatidate transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa160_c":-1.0,
"pa160_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA160abcpp"
],
"metanetx.reaction":[
"MNXR102307"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09056"
]
}
},
{
"id":"NTPTP1",
"name":"Nucleoside triphosphate tripolyhydrolase",
"metabolites":{
"dgsn_c":1.0,
"dgtp_c":-1.0,
"h2o_c":-1.0,
"pppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0208",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPTP1"
]
},
"annotation":{
"bigg.reaction":[
"NTPTP1"
],
"biocyc":[
"META:DGTPTRIPHYDRO-RXN"
],
"ec-code":[
"3.1.5.1"
],
"kegg.reaction":[
"R01856"
],
"metanetx.reaction":[
"MNXR102057"
],
"rhea":[
"15196",
"15195",
"15193",
"15194"
],
"sabiork":[
"232"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01352"
]
}
},
{
"id":"PA161abcpp",
"name":"Phosphatidate transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa161_c":-1.0,
"pa161_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA161abcpp"
],
"metanetx.reaction":[
"MNXR102308"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09057"
]
}
},
{
"id":"LYSt2pp",
"name":"L-lysine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"lys__L_c":1.0,
"lys__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2200",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"LYSt2pp"
]
},
"annotation":{
"bigg.reaction":[
"LYSt2pp"
],
"biocyc":[
"META:TRANS-RXN-58"
],
"metanetx.reaction":[
"MNXR101266"
],
"rhea":[
"28913",
"28914",
"28911",
"28912"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09740",
"rxn08854",
"rxn09674"
]
}
},
{
"id":"PA180abcpp",
"name":"Phosphatidate transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa180_c":-1.0,
"pa180_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA180abcpp"
],
"metanetx.reaction":[
"MNXR102309"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09058"
]
}
},
{
"id":"PA181abcpp",
"name":"Phosphatidate transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pa181_c":-1.0,
"pa181_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PA181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PA181abcpp"
],
"metanetx.reaction":[
"MNXR102310"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09059"
]
}
},
{
"id":"NTPTP2",
"name":"Nucleoside triphosphate tripolyhydrolase",
"metabolites":{
"gsn_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"pppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0208",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"NTPTP2"
]
},
"annotation":{
"bigg.reaction":[
"NTPTP2"
],
"metanetx.reaction":[
"MNXR102058"
],
"rhea":[
"30562",
"30559",
"30561",
"30560"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09016"
]
}
},
{
"id":"NTRIR2x",
"name":"Nitrite Reductase (NADH)",
"metabolites":{
"h2o_c":2.0,
"h_c":-5.0,
"nad_c":3.0,
"nadh_c":-3.0,
"nh4_c":1.0,
"no2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3474 and STM3475",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"NTRIR2x"
]
},
"annotation":{
"bigg.reaction":[
"NTRIR2x"
],
"biocyc":[
"META:RXN-13854"
],
"ec-code":[
"1.7.1.4",
"1.7.1.15"
],
"kegg.reaction":[
"R00787"
],
"metanetx.reaction":[
"MNXR102062"
],
"rhea":[
"24629",
"24628",
"24630",
"24631"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00568",
"rxn11161"
]
}
},
{
"id":"NTRIR3pp",
"name":"Nitrite Reductase (Ubiquinole-8, periplasm)",
"metabolites":{
"h2o_p":2.0,
"h_p":-2.0,
"nh4_p":1.0,
"no2_p":-1.0,
"q8_c":3.0,
"q8h2_c":-3.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4277 and STM4278_S and STM4279 and STM4280",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NTRIR3pp"
]
},
"annotation":{
"bigg.reaction":[
"NTRIR3pp"
],
"metanetx.reaction":[
"MNXR102064"
],
"rhea":[
"29157",
"29155",
"29156",
"29158"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09018"
]
}
},
{
"id":"NTRIR4pp",
"name":"Nitrite Reductase (Menaquinole-8, periplasm)",
"metabolites":{
"h2o_p":2.0,
"h_p":-2.0,
"mql8_c":-3.0,
"mqn8_c":3.0,
"nh4_p":1.0,
"no2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4277 and STM4278_S and STM4279 and STM4280",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"NTRIR4pp"
]
},
"annotation":{
"bigg.reaction":[
"NTRIR4pp"
],
"metanetx.reaction":[
"MNXR102065"
],
"rhea":[
"29164",
"29166",
"29165",
"29163"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09019"
]
}
},
{
"id":"O2Stex",
"name":"Superoxide anion transport via diffusion (extracellular to periplasm)",
"metabolites":{
"o2s_e":-1.0,
"o2s_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"O2Stex"
]
},
"annotation":{
"bigg.reaction":[
"O2Stex"
],
"metanetx.reaction":[
"MNXR102089"
],
"reactome.reaction":[
"R-HSA-1222342"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PACALDt2rpp",
"name":"Phenylacetaldehyde reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"pacald_c":1.0,
"pacald_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PACALDt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"PACALDt2rpp"
],
"metanetx.reaction":[
"MNXR102313"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09060",
"rxn11408"
]
}
},
{
"id":"PACALDtex",
"name":"Phenethylacetaldehyde transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pacald_e":-1.0,
"pacald_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PACALDtex"
]
},
"annotation":{
"bigg.reaction":[
"PACALDtex"
],
"biocyc":[
"META:TRANS-RXN0-284"
],
"metanetx.reaction":[
"MNXR102312"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09061",
"rxn13374",
"rxn13373"
]
}
},
{
"id":"PANTS",
"name":"Pantothenate synthase",
"metabolites":{
"ala_B_c":-1.0,
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pant__R_c":-1.0,
"pnto__R_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0181",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PANTS"
]
},
"annotation":{
"bigg.reaction":[
"PANTS"
],
"biocyc":[
"META:PANTOATE-BETA-ALANINE-LIG-RXN"
],
"ec-code":[
"6.3.2.1"
],
"kegg.reaction":[
"R02473"
],
"metanetx.reaction":[
"MNXR102345"
],
"rhea":[
"10914",
"10913",
"10915",
"10912"
],
"sabiork":[
"2406"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01791"
]
}
},
{
"id":"PAPA120",
"name":"Phosphatidate phosphatase (n-C12:0)",
"metabolites":{
"12dgr120_c":1.0,
"h2o_c":-1.0,
"pa120_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA120"
]
},
"annotation":{
"bigg.reaction":[
"PAPA120"
],
"metanetx.reaction":[
"MNXR102347"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PAPA120pp",
"name":"Phosphatidate phosphatase (periplasmic, n-C12:0)",
"metabolites":{
"12dgr120_p":1.0,
"h2o_p":-1.0,
"pa120_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA120pp"
]
},
"annotation":{
"bigg.reaction":[
"PAPA120pp"
],
"metanetx.reaction":[
"MNXR102347"
],
"sbo":"SBO:0000176"
}
},
{
"id":"O2tex",
"name":"Oxygen transport via diffusion (extracellular to periplasm)",
"metabolites":{
"o2_e":-1.0,
"o2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"O2tex"
]
},
"annotation":{
"bigg.reaction":[
"O2tex"
],
"biocyc":[
"META:TRANS-RXN0-474"
],
"metanetx.reaction":[
"MNXR102090"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09641",
"rxn05468",
"rxn09031",
"rxn09032",
"rxn09734"
]
}
},
{
"id":"O2tpp",
"name":"O2 transport via diffusion (periplasm)",
"metabolites":{
"o2_c":1.0,
"o2_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"O2tpp"
]
},
"annotation":{
"bigg.reaction":[
"O2tpp"
],
"biocyc":[
"META:TRANS-RXN0-474"
],
"metanetx.reaction":[
"MNXR102090"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09641",
"rxn05468",
"rxn09031",
"rxn09032",
"rxn09734"
]
}
},
{
"id":"PAPA140",
"name":"Phosphatidate phosphatase (n-C14:0)",
"metabolites":{
"12dgr140_c":1.0,
"h2o_c":-1.0,
"pa140_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA140"
]
},
"annotation":{
"bigg.reaction":[
"PAPA140"
],
"metanetx.reaction":[
"MNXR102348"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LYSt3pp",
"name":"L-lysine transport out via proton antiport (cytoplasm to periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"lys__L_c":-1.0,
"lys__L_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3066",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"LYSt3pp"
]
},
"annotation":{
"bigg.reaction":[
"LYSt3pp"
],
"metanetx.reaction":[
"MNXR101267"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05305",
"rxn08855",
"rxn13343"
]
}
},
{
"id":"PAPA140pp",
"name":"Phosphatidate phosphatase (periplasmic, n-C14:0)",
"metabolites":{
"12dgr140_p":1.0,
"h2o_p":-1.0,
"pa140_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA140pp"
]
},
"annotation":{
"bigg.reaction":[
"PAPA140pp"
],
"metanetx.reaction":[
"MNXR102348"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PAPA141",
"name":"Phosphatidate phosphatase (n-C14:1)",
"metabolites":{
"12dgr141_c":1.0,
"h2o_c":-1.0,
"pa141_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA141"
]
},
"annotation":{
"bigg.reaction":[
"PAPA141"
],
"metanetx.reaction":[
"MNXR102349"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAADC",
"name":"Oxaloacetate decarboxylase",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"oaa_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1884",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"OAADC"
]
},
"annotation":{
"bigg.reaction":[
"OAADC"
],
"biocyc":[
"META:OXALODECARB-RXN"
],
"ec-code":[
"4.1.1.3",
"1.1.1.38",
"1.1.1.40"
],
"kegg.reaction":[
"R00217"
],
"metanetx.reaction":[
"MNXR102097"
],
"rhea":[
"15641",
"15642",
"15643",
"15644"
],
"sabiork":[
"149"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00162"
]
}
},
{
"id":"OBTFL",
"name":"2-Oxobutanoate formate lyase",
"metabolites":{
"2obut_c":-1.0,
"coa_c":-1.0,
"for_c":1.0,
"ppcoa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"((STM0970 and STM0973) and STM2646) or (STM0970 and STM0973) or (STM0970 and STM3241)",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"OBTFL"
]
},
"annotation":{
"bigg.reaction":[
"OBTFL"
],
"biocyc":[
"META:KETOBUTFORMLY-RXN"
],
"ec-code":[
"2.3.1",
"2.3.1.54"
],
"kegg.reaction":[
"R06987"
],
"metanetx.reaction":[
"MNXR102135"
],
"rhea":[
"28055",
"28056",
"28057",
"28054"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04794"
]
}
},
{
"id":"PAPA141pp",
"name":"Phosphatidate phosphatase (periplasmic, n-C14:1)",
"metabolites":{
"12dgr141_p":1.0,
"h2o_p":-1.0,
"pa141_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA141pp"
]
},
"annotation":{
"bigg.reaction":[
"PAPA141pp"
],
"metanetx.reaction":[
"MNXR102349"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LYStex",
"name":"L-lysine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"lys__L_e":-1.0,
"lys__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"LYStex"
]
},
"annotation":{
"bigg.reaction":[
"LYStex"
],
"biocyc":[
"META:TRANS-RXN0-569"
],
"metanetx.reaction":[
"MNXR101269"
],
"sabiork":[
"7984"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10834",
"rxn08856"
]
}
},
{
"id":"PAPA160",
"name":"Phosphatidate phosphatase (n-C16:0)",
"metabolites":{
"12dgr160_c":1.0,
"h2o_c":-1.0,
"pa160_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA160"
]
},
"annotation":{
"bigg.reaction":[
"PAPA160"
],
"ec-code":[
"3.1.3.4"
],
"metanetx.reaction":[
"MNXR102350"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PAPA160pp",
"name":"Phosphatidate phosphatase (periplasmic, n-C16:0)",
"metabolites":{
"12dgr160_p":1.0,
"h2o_p":-1.0,
"pa160_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA160pp"
]
},
"annotation":{
"bigg.reaction":[
"PAPA160pp"
],
"ec-code":[
"3.1.3.4"
],
"metanetx.reaction":[
"MNXR102350"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OCDCAtexi",
"name":"Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ocdca_e":-1.0,
"ocdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2391",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"OCDCAtexi"
]
},
"annotation":{
"bigg.reaction":[
"OCDCAtexi"
],
"metanetx.reaction":[
"MNXR99109"
],
"rhea":[
"39807",
"39808",
"39809",
"39810"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09034",
"rxn09669"
]
}
},
{
"id":"OCDCEAtexi",
"name":"Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ocdcea_e":-1.0,
"ocdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2391",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"OCDCEAtexi"
]
},
"annotation":{
"bigg.reaction":[
"OCDCEAtexi"
],
"metanetx.reaction":[
"MNXR99110"
],
"rhea":[
"33658",
"33655",
"33656",
"33657"
],
"sabiork":[
"10346"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PAPA161",
"name":"Phosphatidate phosphatase (n-C16:1)",
"metabolites":{
"12dgr161_c":1.0,
"h2o_c":-1.0,
"pa161_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA161"
]
},
"annotation":{
"bigg.reaction":[
"PAPA161"
],
"metanetx.reaction":[
"MNXR102353"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LYXI",
"name":"Lyxose isomerase",
"metabolites":{
"lyx__L_c":-1.0,
"xylu__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4046",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"LYXI"
]
},
"annotation":{
"bigg.reaction":[
"LYXI"
],
"ec-code":[
"5.3.1.-"
],
"kegg.reaction":[
"R01906"
],
"metanetx.reaction":[
"MNXR138561"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01394"
]
}
},
{
"id":"PAPA161pp",
"name":"Phosphatidate phosphatase (periplasmic, n-C16:1)",
"metabolites":{
"12dgr161_p":1.0,
"h2o_p":-1.0,
"pa161_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA161pp"
]
},
"annotation":{
"bigg.reaction":[
"PAPA161pp"
],
"metanetx.reaction":[
"MNXR102353"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OCTAtex",
"name":"Octanoate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"octa_e":-1.0,
"octa_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"OCTAtex"
]
},
"annotation":{
"bigg.reaction":[
"OCTAtex"
],
"biocyc":[
"META:TRANS-RXN0-272"
],
"metanetx.reaction":[
"MNXR99126"
],
"rhea":[
"29761",
"29762",
"29759",
"29760"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09036",
"rxn09840"
]
}
},
{
"id":"OCTDPS",
"name":"Octaprenyl pyrophosphate synthase",
"metabolites":{
"frdp_c":-1.0,
"ipdp_c":-5.0,
"octdp_c":1.0,
"ppi_c":5.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3305",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OCTDPS"
]
},
"annotation":{
"bigg.reaction":[
"OCTDPS"
],
"biocyc":[
"META:RXN-8992"
],
"ec-code":[
"2.5.1.90"
],
"kegg.reaction":[
"R09248"
],
"metanetx.reaction":[
"MNXR102153"
],
"rhea":[
"27801",
"27799",
"27800",
"27798"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09037"
]
}
},
{
"id":"LYXt2pp",
"name":"L-Lyxose transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"lyx__L_c":1.0,
"lyx__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4050",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"LYXt2pp"
]
},
"annotation":{
"bigg.reaction":[
"LYXt2pp"
],
"biocyc":[
"META:TRANS-RXN0-236"
],
"metanetx.reaction":[
"MNXR101271"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08858",
"rxn05692"
]
}
},
{
"id":"CTECOAI8",
"name":"3-cis-2-trans-enoyl-CoA isomerase",
"metabolites":{
"od2coa_c":1.0,
"odecoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"ODECOAI"
]
},
"annotation":{
"bigg.reaction":[
"CTECOAI8"
],
"ec-code":[
"5.3.3.8"
],
"metanetx.reaction":[
"MNXR96942"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PAPA180",
"name":"Phosphatidate phosphatase (n-C18:0)",
"metabolites":{
"12dgr180_c":1.0,
"h2o_c":-1.0,
"pa180_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA180"
]
},
"annotation":{
"bigg.reaction":[
"PAPA180"
],
"metanetx.reaction":[
"MNXR102354"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LYXtex",
"name":"L-Lyxose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"lyx__L_e":-1.0,
"lyx__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"LYXtex"
]
},
"annotation":{
"bigg.reaction":[
"LYXtex"
],
"metanetx.reaction":[
"MNXR101272"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08859"
]
}
},
{
"id":"PAPA180pp",
"name":"Phosphatidate phosphatase (periplasmic, n-C18:0)",
"metabolites":{
"12dgr180_p":1.0,
"h2o_p":-1.0,
"pa180_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA180pp"
]
},
"annotation":{
"bigg.reaction":[
"PAPA180pp"
],
"metanetx.reaction":[
"MNXR102354"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PAPA181",
"name":"Phosphatidate phosphatase (n-C18:1)",
"metabolites":{
"12dgr181_c":1.0,
"h2o_c":-1.0,
"pa181_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA181"
]
},
"annotation":{
"bigg.reaction":[
"PAPA181"
],
"metanetx.reaction":[
"MNXR102356"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PAPA181pp",
"name":"Phosphatidate phosphatase (periplasmic, n-C18:1)",
"metabolites":{
"12dgr181_p":1.0,
"h2o_p":-1.0,
"pa181_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PAPA181pp"
]
},
"annotation":{
"bigg.reaction":[
"PAPA181pp"
],
"metanetx.reaction":[
"MNXR102356"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PAPPT3",
"name":"Phospho-N-acetylmuramoyl-pentapeptide-transferase (meso-2,6-diaminopimelate)",
"metabolites":{
"uagmda_c":1.0,
"udcpp_c":-1.0,
"ugmda_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0125",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"PAPPT3"
]
},
"annotation":{
"bigg.reaction":[
"PAPPT3"
],
"ec-code":[
"2.7.8.13"
],
"metanetx.reaction":[
"MNXR102373"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03904"
]
}
},
{
"id":"PAPSR",
"name":"Phosphoadenylyl-sulfate reductase (thioredoxin)",
"metabolites":{
"h_c":2.0,
"pap_c":1.0,
"paps_c":-1.0,
"so3_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2946 and STM2649) or (STM2946 and STM3915)",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"PAPSR"
]
},
"annotation":{
"bigg.reaction":[
"PAPSR"
],
"biocyc":[
"META:1.8.4.8-RXN"
],
"ec-code":[
"1.8.4.8"
],
"kegg.reaction":[
"R02021"
],
"metanetx.reaction":[
"MNXR102376"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05239"
]
}
},
{
"id":"PAPSR2",
"name":"Phosphoadenylyl-sulfate reductase (glutaredoxin)",
"metabolites":{
"grxox_c":1.0,
"grxrd_c":-1.0,
"h_c":2.0,
"pap_c":1.0,
"paps_c":-1.0,
"so3_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2946 and STM0872) or (STM2946 and STM1165) or (STM2946 and STM1433) or (STM2946 and STM3702)",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"PAPSR2"
]
},
"annotation":{
"bigg.reaction":[
"PAPSR2"
],
"ec-code":[
"1.8.4.8"
],
"metanetx.reaction":[
"MNXR102377"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09069"
]
}
},
{
"id":"OHPBAT",
"name":"O-Phospho-4-hydroxy-L-threonine:2-oxoglutarate aminotransferase",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"ohpb_c":-1.0,
"phthr_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0977",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OHPBAT"
]
},
"annotation":{
"bigg.reaction":[
"OHPBAT"
],
"biocyc":[
"META:PSERTRANSAMPYR-RXN"
],
"ec-code":[
"2.6.1.52"
],
"kegg.reaction":[
"R05085"
],
"metanetx.reaction":[
"MNXR102169"
],
"rhea":[
"16576",
"16575",
"16574",
"16573"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03445"
]
}
},
{
"id":"OHPHM",
"name":"2-octaprenyl-6-hydroxyphenol methylase",
"metabolites":{
"2ohph_c":-1.0,
"2omph_c":1.0,
"ahcys_c":1.0,
"amet_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2276",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OHPHM"
]
},
"annotation":{
"bigg.reaction":[
"OHPHM"
],
"biocyc":[
"META:2-OCTAPRENYL-6-OHPHENOL-METHY-RXN"
],
"ec-code":[
"2.1.1.222"
],
"kegg.reaction":[
"R04988"
],
"metanetx.reaction":[
"MNXR102170"
],
"rhea":[
"27772",
"27773",
"27771",
"27770"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03395"
]
}
},
{
"id":"OMBZLM",
"name":"2-Octaprenyl-6-methoxy-benzoquinol methylase",
"metabolites":{
"2ombzl_c":-1.0,
"2ommbl_c":1.0,
"ahcys_c":1.0,
"amet_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3970",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OMBZLM"
]
},
"annotation":{
"bigg.reaction":[
"OMBZLM"
],
"biocyc":[
"META:2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN"
],
"ec-code":[
"2.1.1.201"
],
"metanetx.reaction":[
"MNXR115030"
],
"rhea":[
"27774",
"27777",
"27776",
"27775"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09039"
]
}
},
{
"id":"OMCDC",
"name":"2-Oxo-4-methyl-3-carboxypentanoate decarboxylation",
"metabolites":{
"3c4mop_c":-1.0,
"4mop_c":1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0112",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"OMCDC"
]
},
"annotation":{
"bigg.reaction":[
"OMCDC"
],
"biocyc":[
"META:RXN-7800"
],
"ec-code":[
"1.1.1.85"
],
"kegg.reaction":[
"R01652"
],
"metanetx.reaction":[
"MNXR102180"
],
"rhea":[
"25078",
"25080",
"25081",
"25079"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01208"
]
}
},
{
"id":"OMMBLHX",
"name":"2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase",
"metabolites":{
"2omhmbl_c":1.0,
"2ommbl_c":-1.0,
"o2_c":-0.5
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0671",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OMMBLHX"
]
},
"annotation":{
"bigg.reaction":[
"OMMBLHX"
],
"metanetx.reaction":[
"MNXR138669"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09040"
]
}
},
{
"id":"OMMBLHX3",
"name":"2-Octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (anaerobic)",
"metabolites":{
"2omhmbl_c":1.0,
"2ommbl_c":-1.0,
"adp_c":2.0,
"atp_c":-2.0,
"h2o_c":-3.0,
"h_c":3.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pi_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OMMBLHX3"
]
},
"annotation":{
"bigg.reaction":[
"OMMBLHX3"
],
"metanetx.reaction":[
"MNXR138670"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09041"
]
}
},
{
"id":"PDH",
"name":"Pyruvate dehydrogenase",
"metabolites":{
"accoa_c":1.0,
"co2_c":1.0,
"coa_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0152 and STM0153 and STM0154",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"PDH"
]
},
"annotation":{
"bigg.reaction":[
"PDH"
],
"biocyc":[
"META:PYRUVDEH-RXN"
],
"ec-code":[
"1.2.1",
"1.8.1.4",
"1.2.1.51",
"1.2.4.1",
"2.3.1.12"
],
"kegg.reaction":[
"R00209"
],
"metanetx.reaction":[
"MNXR102425"
],
"reactome.reaction":[
"R-RNO-71397",
"R-OSA-71397",
"R-GGA-373177",
"R-DME-71397",
"R-TGU-71397",
"R-XTR-71397",
"R-CFA-71397",
"R-BTA-71397",
"R-HSA-71397",
"R-GGA-71397",
"R-SPO-71397",
"R-CEL-71397",
"R-DDI-71397",
"R-DRE-71397",
"R-SSC-71397",
"R-SCE-71397",
"R-ATH-71397",
"R-MMU-71397"
],
"rhea":[
"28043",
"28045",
"28044",
"28042"
],
"sabiork":[
"523"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00154"
]
}
},
{
"id":"PDX5PO2",
"name":"Pyridoxine 5'-phosphate oxidase (anaerboic",
"metabolites":{
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pdx5p_c":-1.0,
"pydx5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PDX5PO2"
]
},
"annotation":{
"bigg.reaction":[
"PDX5PO2"
],
"metanetx.reaction":[
"MNXR102437"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09071"
]
}
},
{
"id":"OMPDC",
"name":"Orotidine-5'-phosphate decarboxylase",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"orot5p_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1707",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"OMPDC"
]
},
"annotation":{
"bigg.reaction":[
"OMPDC"
],
"biocyc":[
"META:OROTPDECARB-RXN"
],
"ec-code":[
"4.1.1.23"
],
"kegg.reaction":[
"R00965"
],
"metanetx.reaction":[
"MNXR102190"
],
"reactome.reaction":[
"R-TGU-73564",
"R-GGA-419461",
"R-SSC-73564",
"R-HSA-73564",
"R-SPO-73564",
"R-DRE-73564",
"R-DDI-73564",
"R-GGA-73564",
"R-CFA-73564",
"R-PFA-73564",
"R-ATH-73564",
"R-OSA-73564",
"R-BTA-73564",
"R-RNO-73564",
"R-MMU-73564",
"R-SCE-73564",
"R-CEL-73564",
"R-DME-73564",
"R-XTR-73564"
],
"rhea":[
"11597",
"11599",
"11596",
"11598"
],
"sabiork":[
"463"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00710"
]
}
},
{
"id":"L_LACD2",
"name":"L-Lactate dehydrogenase (ubiquinone)",
"metabolites":{
"lac__L_c":-1.0,
"pyr_c":1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3694",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"L_LACD2"
]
},
"annotation":{
"bigg.reaction":[
"L_LACD2"
],
"ec-code":[
"1.1.2.3"
],
"metanetx.reaction":[
"MNXR101273"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08792"
]
}
},
{
"id":"OMPHHX",
"name":"2-octaprenyl-6-methoxyphenol hydroxylase",
"metabolites":{
"2ombzl_c":1.0,
"2omph_c":-1.0,
"o2_c":-0.5
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3057",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OMPHHX"
]
},
"annotation":{
"bigg.reaction":[
"OMPHHX"
],
"metanetx.reaction":[
"MNXR138671"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09042"
]
}
},
{
"id":"OMPHHX3",
"name":"2-octaprenyl-6-methoxyphenol hydroxylase (anaerobic)",
"metabolites":{
"2ombzl_c":1.0,
"2omph_c":-1.0,
"adp_c":2.0,
"atp_c":-2.0,
"h2o_c":-3.0,
"h_c":3.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pi_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"OMPHHX3"
]
},
"annotation":{
"bigg.reaction":[
"OMPHHX3"
],
"metanetx.reaction":[
"MNXR138672"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09043"
]
}
},
{
"id":"PDX5POi",
"name":"Pyridoxine 5'-phosphate oxidase",
"metabolites":{
"h2o2_c":1.0,
"o2_c":-1.0,
"pdx5p_c":-1.0,
"pydx5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1448",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PDX5POi"
]
},
"annotation":{
"bigg.reaction":[
"PDX5POi"
],
"biocyc":[
"META:PNPOXI-RXN"
],
"ec-code":[
"1.4.3.5"
],
"kegg.reaction":[
"R00278"
],
"metanetx.reaction":[
"MNXR102438"
],
"reactome.reaction":[
"R-CFA-965019",
"R-HSA-965019",
"R-CEL-965019",
"R-XTR-965019",
"R-MMU-965019",
"R-DRE-965019",
"R-SCE-965019",
"R-SPO-965019",
"R-GGA-965019",
"R-DME-965019",
"R-SSC-965019",
"R-BTA-965019",
"R-RNO-965019",
"R-DDI-965019"
],
"rhea":[
"15151",
"15149",
"15152",
"15150"
],
"sabiork":[
"778"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00209"
]
}
},
{
"id":"PDX5PS",
"name":"Pyridoxine 5'-phosphate synthase",
"metabolites":{
"co2_c":1.0,
"dxyl5p_c":-1.0,
"h2o_c":2.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pdx5p_c":1.0,
"phthr_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0091 or STM0163) and STM2578",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PDX5PS"
]
},
"annotation":{
"bigg.reaction":[
"PDX5PS"
],
"metanetx.reaction":[
"MNXR102439"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09072"
]
}
},
{
"id":"PDXPP",
"name":"Pyridoxine 5-phosphate phosphatase",
"metabolites":{
"h2o_c":-1.0,
"pdx5p_c":-1.0,
"pi_c":1.0,
"pydxn_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PDXPP"
]
},
"annotation":{
"bigg.reaction":[
"PDXPP"
],
"biocyc":[
"META:RXN-14181"
],
"ec-code":[
"3.1.3.74"
],
"kegg.reaction":[
"R01911"
],
"metanetx.reaction":[
"MNXR102440"
],
"rhea":[
"25114",
"25113",
"25115",
"25112"
],
"sabiork":[
"1965"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01398"
]
}
},
{
"id":"PE120abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe120_c":-1.0,
"pe120_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE120abcpp"
],
"metanetx.reaction":[
"MNXR102441"
],
"sbo":"SBO:0000185"
}
},
{
"id":"L_LACD3",
"name":"L-Lactate dehydrogenase (menaquinone)",
"metabolites":{
"lac__L_c":-1.0,
"mql8_c":1.0,
"mqn8_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3694",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"L_LACD3"
]
},
"annotation":{
"bigg.reaction":[
"L_LACD3"
],
"ec-code":[
"1.1.2.3"
],
"metanetx.reaction":[
"MNXR101275"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08793"
]
}
},
{
"id":"PE140abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe140_c":-1.0,
"pe140_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE140abcpp"
],
"metanetx.reaction":[
"MNXR102442"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PFL",
"name":"Pyruvate formate lyase",
"metabolites":{
"accoa_c":1.0,
"coa_c":-1.0,
"for_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0970 and STM0973) or (STM0970 and STM3241) or (STM4114 and STM4115) or (STM0843 and STM0844)",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"PFL"
]
},
"annotation":{
"bigg.reaction":[
"PFL"
],
"biocyc":[
"META:PYRUVFORMLY-RXN"
],
"ec-code":[
"2.3.1.54"
],
"kegg.reaction":[
"R00212"
],
"metanetx.reaction":[
"MNXR102514"
],
"rhea":[
"11847",
"11845",
"11844",
"11846"
],
"sabiork":[
"146"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00157"
]
}
},
{
"id":"L_LACt2rpp",
"name":"L-lactate reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"lac__L_c":1.0,
"lac__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3692",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"L_LACt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"L_LACt2rpp"
],
"biocyc":[
"META:TRANS-RXN-104"
],
"metanetx.reaction":[
"MNXR101277"
],
"reactome.reaction":[
"R-GGA-373889",
"R-XTR-373875",
"R-DME-373867",
"R-DME-373875",
"R-MMU-373867",
"R-TGU-373867",
"R-GGA-373887",
"R-SSC-373875",
"R-DRE-373875",
"R-BTA-373867",
"R-GGA-373867",
"R-CFA-373867",
"R-SSC-373867",
"R-DRE-373867",
"R-RNO-373867",
"R-TGU-373875",
"R-XTR-373867",
"R-HSA-373867",
"R-CFA-373875",
"R-MMU-373875",
"R-HSA-373875",
"R-GGA-373875",
"R-RNO-373875",
"R-BTA-373875"
],
"rhea":[
"29418",
"29415",
"29416",
"29417"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05602",
"rxn08794",
"rxn13334"
]
}
},
{
"id":"PG120abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg120_c":-1.0,
"pg120_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG120abcpp"
],
"metanetx.reaction":[
"MNXR102516"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PG140abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg140_c":-1.0,
"pg140_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG140abcpp"
],
"metanetx.reaction":[
"MNXR102517"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PE141abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe141_c":-1.0,
"pe141_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE141abcpp"
],
"metanetx.reaction":[
"MNXR102443"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PE160abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe160_c":-1.0,
"pe160_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE160abcpp"
],
"metanetx.reaction":[
"MNXR102444"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09076"
]
}
},
{
"id":"PE161abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe161_c":-1.0,
"pe161_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE161abcpp"
],
"metanetx.reaction":[
"MNXR102445"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PE180abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe180_c":-1.0,
"pe180_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE180abcpp"
],
"metanetx.reaction":[
"MNXR102450"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09078"
]
}
},
{
"id":"PE181abcpp",
"name":"Phosphatidylethanolamine transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pe181_c":-1.0,
"pe181_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PE181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PE181abcpp"
],
"metanetx.reaction":[
"MNXR102459"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PG141abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg141_c":-1.0,
"pg141_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG141abcpp"
],
"metanetx.reaction":[
"MNXR102518"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PG160abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg160_c":-1.0,
"pg160_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG160abcpp"
],
"metanetx.reaction":[
"MNXR102519"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09088"
]
}
},
{
"id":"PG161abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg161_c":-1.0,
"pg161_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG161abcpp"
],
"metanetx.reaction":[
"MNXR102520"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09089"
]
}
},
{
"id":"PG180abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg180_c":-1.0,
"pg180_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG180abcpp"
],
"metanetx.reaction":[
"MNXR102521"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09090"
]
}
},
{
"id":"PG181abcpp",
"name":"Phosphatidylglycerol transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pg181_c":-1.0,
"pg181_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PG181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PG181abcpp"
],
"metanetx.reaction":[
"MNXR102524"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PEAMNtex",
"name":"Phenethylamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"peamn_e":-1.0,
"peamn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PEAMNtex"
]
},
"annotation":{
"bigg.reaction":[
"PEAMNtex"
],
"metanetx.reaction":[
"MNXR102462"
],
"rhea":[
"29745",
"29744",
"29746",
"29743"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11405",
"rxn09080"
]
}
},
{
"id":"PERD",
"name":"Erythronate 4-phosphate (4per) dehydrogenase",
"metabolites":{
"4per_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"ohpb_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2370",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PERD"
]
},
"annotation":{
"bigg.reaction":[
"PERD"
],
"biocyc":[
"META:ERYTHRON4PDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.290"
],
"kegg.reaction":[
"R04210"
],
"metanetx.reaction":[
"MNXR102495"
],
"rhea":[
"18831",
"18830",
"18832",
"18829"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02939"
]
}
},
{
"id":"PGAMT",
"name":"Phosphoglucosamine mutase",
"metabolites":{
"gam1p_c":-1.0,
"gam6p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3294",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"PGAMT"
]
},
"annotation":{
"bigg.reaction":[
"PGAMT"
],
"biocyc":[
"META:5.4.2.10-RXN"
],
"ec-code":[
"5.4.2.10"
],
"kegg.reaction":[
"R02060"
],
"metanetx.reaction":[
"MNXR102526"
],
"rhea":[
"23427",
"23425",
"23426",
"23424"
],
"sabiork":[
"2077"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01485"
]
}
},
{
"id":"PETNT161pp",
"name":"Phosphoethanolamine transferase (c-C16:1)",
"metabolites":{
"12dgr161_p":1.0,
"enlipa_p":1.0,
"lipa_p":-1.0,
"pe161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3635",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"PETNT161pp"
]
},
"annotation":{
"bigg.reaction":[
"PETNT161pp"
],
"metanetx.reaction":[
"MNXR102499"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGCD",
"name":"Phosphoglycerate dehydrogenase",
"metabolites":{
"3pg_c":-1.0,
"3php_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3062",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"PGCD"
]
},
"annotation":{
"bigg.reaction":[
"PGCD"
],
"biocyc":[
"META:PGLYCDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.95"
],
"kegg.reaction":[
"R01513"
],
"metanetx.reaction":[
"MNXR102527"
],
"reactome.reaction":[
"R-DME-977348",
"R-RNO-977348",
"R-ATH-977348",
"R-GGA-977348",
"R-DDI-977348",
"R-HSA-977348",
"R-SCE-977348",
"R-SPO-977348",
"R-OSA-977348",
"R-SSC-977348",
"R-CEL-977348",
"R-MMU-977348",
"R-DRE-977348",
"R-BTA-977348",
"R-CFA-977348",
"R-XTR-977348"
],
"rhea":[
"12644",
"12643",
"12642",
"12641"
],
"sabiork":[
"8970"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01101"
]
}
},
{
"id":"L_LACtex",
"name":"L-lactate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"lac__L_e":-1.0,
"lac__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"L_LACtex"
]
},
"annotation":{
"bigg.reaction":[
"L_LACtex"
],
"metanetx.reaction":[
"MNXR100999"
],
"rhea":[
"34989",
"34988",
"34987",
"34990"
],
"sabiork":[
"10553"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11016",
"rxn08795"
]
}
},
{
"id":"PGI",
"name":"Glucose-6-phosphate isomerase",
"metabolites":{
"f6p_c":1.0,
"g6p_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4221",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"PGI"
]
},
"annotation":{
"bigg.reaction":[
"PGI"
],
"biocyc":[
"META:PGLUCISOM-RXN"
],
"ec-code":[
"5.3.1.9"
],
"metanetx.reaction":[
"MNXR102535"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PETNT181pp",
"name":"Phosphoethanolamine transferase (c-C16:1)",
"metabolites":{
"12dgr181_p":1.0,
"enlipa_p":1.0,
"lipa_p":-1.0,
"pe181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3635",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"PETNT181pp"
]
},
"annotation":{
"bigg.reaction":[
"PETNT181pp"
],
"metanetx.reaction":[
"MNXR102500"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PFK",
"name":"Phosphofructokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"f6p_c":-1.0,
"fdp_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4062 or STM1326",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"PFK"
]
},
"annotation":{
"bigg.reaction":[
"PFK"
],
"ec-code":[
"2.7.1.11"
],
"metanetx.reaction":[
"MNXR102507"
],
"rhea":[
"16111",
"16109",
"16110",
"16112"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGK",
"name":"Phosphoglycerate kinase",
"metabolites":{
"13dpg_c":1.0,
"3pg_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3069",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"PGK"
]
},
"annotation":{
"bigg.reaction":[
"PGK"
],
"biocyc":[
"META:PHOSGLYPHOS-RXN"
],
"ec-code":[
"2.7.2.3"
],
"kegg.reaction":[
"R01512"
],
"metanetx.reaction":[
"MNXR102538"
],
"reactome.reaction":[
"R-ATH-71850",
"R-DME-71850",
"R-GGA-71850",
"R-SPO-71850",
"R-OSA-71850",
"R-GGA-353039",
"R-GGA-353023",
"R-BTA-71850",
"R-CFA-70486",
"R-MMU-71850",
"R-DME-70486",
"R-PFA-71850",
"R-SPO-70486",
"R-SCE-70486",
"R-PFA-70486",
"R-SSC-70486",
"R-ATH-70486",
"R-DRE-70486",
"R-HSA-70486",
"R-OSA-70486",
"R-XTR-71850",
"R-MMU-70486",
"R-RNO-70486",
"R-TGU-70486",
"R-DRE-71850",
"R-SSC-71850",
"R-SCE-71850",
"R-CFA-71850",
"R-XTR-70486",
"R-DDI-70486",
"R-DDI-71850",
"R-RNO-71850",
"R-BTA-70486",
"R-CEL-70486",
"R-HSA-71850",
"R-CEL-71850",
"R-GGA-70486",
"R-TGU-71850"
],
"rhea":[
"14801",
"14804",
"14802",
"14803"
],
"sabiork":[
"7644"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01100"
]
}
},
{
"id":"PFK_2",
"name":"Phosphofructokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"tag6p__D_c":-1.0,
"tagdp__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4062 or STM3257 or STM1326",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PFK_2"
]
},
"annotation":{
"bigg.reaction":[
"PFK_2"
],
"biocyc":[
"META:TAGAKIN-RXN"
],
"ec-code":[
"2.7.1.11",
"2.7.1.144",
"2.7.1.56"
],
"kegg.reaction":[
"R03236"
],
"metanetx.reaction":[
"MNXR102509"
],
"rhea":[
"12420",
"12421",
"12423",
"12422"
],
"sabiork":[
"3059"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02314"
]
}
},
{
"id":"M1PD",
"name":"Mannitol-1-phosphate 5-dehydrogenase",
"metabolites":{
"f6p_c":1.0,
"h_c":1.0,
"mnl1p_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3686",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"M1PD"
]
},
"annotation":{
"bigg.reaction":[
"M1PD"
],
"biocyc":[
"META:MANNPDEHYDROG-RXN"
],
"ec-code":[
"1.1.1.17"
],
"kegg.reaction":[
"R02703"
],
"metanetx.reaction":[
"MNXR101311"
],
"rhea":[
"19664",
"19663",
"19661",
"19662"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGL",
"name":"6-phosphogluconolactonase",
"metabolites":{
"6pgc_c":1.0,
"6pgl_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0785",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"PGL"
]
},
"annotation":{
"bigg.reaction":[
"PGL"
],
"biocyc":[
"META:6PGLUCONOLACT-RXN"
],
"ec-code":[
"3.1.1.31"
],
"kegg.reaction":[
"R02035"
],
"metanetx.reaction":[
"MNXR102539"
],
"reactome.reaction":[
"R-OSA-71296",
"R-CFA-71296",
"R-CEL-71296",
"R-GGA-71296",
"R-MMU-71296",
"R-SSC-71296",
"R-BTA-71296",
"R-ATH-71296",
"R-DME-71296",
"R-DRE-71296",
"R-SCE-71296",
"R-HSA-71296",
"R-XTR-71296",
"R-RNO-71296",
"R-DDI-71296",
"R-SPO-71296"
],
"rhea":[
"12559",
"12556",
"12557",
"12558"
],
"sabiork":[
"109"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01476"
]
}
},
{
"id":"PGLYCP",
"name":"Phosphoglycolate phosphatase",
"metabolites":{
"2pglyc_c":-1.0,
"glyclt_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3482",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PGLYCP"
]
},
"annotation":{
"bigg.reaction":[
"PGLYCP"
],
"biocyc":[
"META:GPH-RXN"
],
"ec-code":[
"3.1.3.18"
],
"kegg.reaction":[
"R01334"
],
"metanetx.reaction":[
"MNXR102543"
],
"rhea":[
"14369",
"14371",
"14370",
"14372"
],
"sabiork":[
"433"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00980"
]
}
},
{
"id":"MACPD",
"name":"Malonyl-ACP decarboxylase",
"metabolites":{
"acACP_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"malACP_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2378",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"MACPD"
]
},
"annotation":{
"bigg.reaction":[
"MACPD"
],
"biocyc":[
"META:MALONYL-ACPDECARBOX-RXN"
],
"ec-code":[
"2.3.1",
"4.1.1.87"
],
"kegg.reaction":[
"R09482"
],
"metanetx.reaction":[
"MNXR101327"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08861"
]
}
},
{
"id":"PGM",
"name":"Phosphoglycerate mutase",
"metabolites":{
"2pg_c":-1.0,
"3pg_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3704 or STM4585 or STM0772",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"PGM"
]
},
"annotation":{
"bigg.reaction":[
"PGM"
],
"biocyc":[
"META:3PGAREARR-RXN",
"META:RXN-15513"
],
"ec-code":[
"5.4.2.1",
"5.4.2.11",
"5.4.2.12"
],
"kegg.reaction":[
"R01518"
],
"metanetx.reaction":[
"MNXR102547"
],
"reactome.reaction":[
"R-XTR-71654",
"R-SSC-71654",
"R-DME-71445",
"R-XTR-71445",
"R-RNO-71445",
"R-GGA-71654",
"R-SSC-71445",
"R-GGA-71445",
"R-DDI-71654",
"R-SPO-71654",
"R-MMU-71445",
"R-BTA-71445",
"R-CFA-71445",
"R-PFA-71445",
"R-GGA-352994",
"R-TGU-71654",
"R-SPO-71445",
"R-HSA-71445",
"R-ATH-71654",
"R-MMU-71654",
"R-BTA-71654",
"R-GGA-353014",
"R-DRE-71654",
"R-HSA-71654",
"R-CFA-71654",
"R-OSA-71654",
"R-DDI-71445",
"R-RNO-71654",
"R-DRE-71445",
"R-OSA-71445",
"R-PFA-71654",
"R-DME-71654",
"R-TGU-71445",
"R-SCE-71445",
"R-ATH-71445",
"R-SCE-71654"
],
"rhea":[
"15902",
"15903",
"15901",
"15904"
],
"sabiork":[
"7641"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01106"
]
}
},
{
"id":"PGMT",
"name":"Phosphoglucomutase",
"metabolites":{
"g1p_c":-1.0,
"g6p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0698 or STM2820",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PGMT"
]
},
"annotation":{
"bigg.reaction":[
"PGMT"
],
"biocyc":[
"META:RXN-16999",
"META:PHOSPHOGLUCMUT-RXN"
],
"ec-code":[
"5.4.2.2",
"5.4.2.8",
"5.4.2.5"
],
"kegg.reaction":[
"R08639"
],
"metanetx.reaction":[
"MNXR102548"
],
"sabiork":[
"12817",
"7674"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00704"
]
}
},
{
"id":"PLIPA1E141pp",
"name":"Phospholipase A1 (phosphatidylethanolamine, n-C14:1) (periplasm)",
"metabolites":{
"2agpe141_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pe141_p":-1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1E141pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1E141pp"
],
"metanetx.reaction":[
"MNXR102976"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1E160pp",
"name":"Phospholipase A1 (phosphatidylethanolamine, n-C16:0) (periplasm)",
"metabolites":{
"2agpe160_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdca_p":1.0,
"pe160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1E160pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1E160pp"
],
"ec-code":[
"3.1.1.32"
],
"metanetx.reaction":[
"MNXR102977"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09133"
]
}
},
{
"id":"PGP120abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C12:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp120_c":-1.0,
"pgp120_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP120abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP120abcpp"
],
"metanetx.reaction":[
"MNXR102550"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MALDt2_2pp",
"name":"D-Malate transport via proton symport (2 H) (periplasm)",
"metabolites":{
"h_c":2.0,
"h_p":-2.0,
"mal__D_c":1.0,
"mal__D_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3614",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALDt2_2pp"
]
},
"annotation":{
"bigg.reaction":[
"MALDt2_2pp"
],
"biocyc":[
"META:TRANS-RXN0-451"
],
"metanetx.reaction":[
"MNXR101340"
],
"rhea":[
"28715",
"28716",
"28718",
"28717"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08863"
]
}
},
{
"id":"PGP140abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C14:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp140_c":-1.0,
"pgp140_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP140abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP140abcpp"
],
"metanetx.reaction":[
"MNXR102551"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PLIPA1E161pp",
"name":"Phospholipase A1 (phosphatidylethanolamine, n-C16:1) (periplasm)",
"metabolites":{
"2agpe161_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdcea_p":1.0,
"pe161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1E161pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1E161pp"
],
"metanetx.reaction":[
"MNXR102978"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1E180pp",
"name":"Phospholipase A1 (phosphatidylethanolamine, n-C18:0) (periplasm)",
"metabolites":{
"2agpe180_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdca_p":1.0,
"pe180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1E180pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1E180pp"
],
"ec-code":[
"3.1.1.32"
],
"metanetx.reaction":[
"MNXR102979"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09135"
]
}
},
{
"id":"PGP141abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C14:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp141_c":-1.0,
"pgp141_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP141abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP141abcpp"
],
"metanetx.reaction":[
"MNXR102552"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PGP160abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C16:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp160_c":-1.0,
"pgp160_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP160abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP160abcpp"
],
"metanetx.reaction":[
"MNXR102553"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09097"
]
}
},
{
"id":"PGP161abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C16:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp161_c":-1.0,
"pgp161_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP161abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP161abcpp"
],
"metanetx.reaction":[
"MNXR102554"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09098"
]
}
},
{
"id":"PGP180abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C18:0, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp180_c":-1.0,
"pgp180_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP180abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP180abcpp"
],
"metanetx.reaction":[
"MNXR102555"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09099"
]
}
},
{
"id":"PGP181abcpp",
"name":"Phosphatidylglycerophosphate transport via ABC system (n-C18:1, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pgp181_c":-1.0,
"pgp181_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0984",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PGP181abcpp"
]
},
"annotation":{
"bigg.reaction":[
"PGP181abcpp"
],
"metanetx.reaction":[
"MNXR102558"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PLIPA1E181pp",
"name":"Phospholipase A1 (phosphatidylethanolamine, n-C18:1) (periplasm)",
"metabolites":{
"2agpe181_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdcea_p":1.0,
"pe181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1E181pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1E181pp"
],
"metanetx.reaction":[
"MNXR102980"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1G120pp",
"name":"Phospholipase A1 (phosphatidylglycerol, n-C12:0) (periplasm)",
"metabolites":{
"2agpg120_p":1.0,
"ddca_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pg120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1G120pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1G120pp"
],
"metanetx.reaction":[
"MNXR102981"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1G140pp",
"name":"Phospholipase A1 (phosphatidylglycerol, n-C14:0) (periplasm)",
"metabolites":{
"2agpg140_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pg140_p":-1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1G140pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1G140pp"
],
"metanetx.reaction":[
"MNXR102982"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1G141pp",
"name":"Phospholipase A1 (phosphatidylglycerol, n-C14:1) (periplasm)",
"metabolites":{
"2agpg141_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pg141_p":-1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1G141pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1G141pp"
],
"metanetx.reaction":[
"MNXR102983"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP120",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C14:0)",
"metabolites":{
"h2o_c":-1.0,
"pg120_c":1.0,
"pgp120_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP120"
]
},
"annotation":{
"bigg.reaction":[
"PGPP120"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102560"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP120pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)",
"metabolites":{
"h2o_p":-1.0,
"pg120_p":1.0,
"pgp120_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710 or STM0420",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP120pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP120pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102560"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1G160pp",
"name":"Phospholipase A1 (phosphatidylglycerol, n-C16:0) (periplasm)",
"metabolites":{
"2agpg160_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdca_p":1.0,
"pg160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1G160pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1G160pp"
],
"metanetx.reaction":[
"MNXR102984"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALDtex",
"name":"D-Malate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"mal__D_e":-1.0,
"mal__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1473 or STM0999 or STM2267 or STM0320",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"MALDtex"
]
},
"annotation":{
"bigg.reaction":[
"MALDtex"
],
"metanetx.reaction":[
"MNXR101341"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08864"
]
}
},
{
"id":"PLIPA1G161pp",
"name":"Phospholipase A1 (phosphatidylglycerol, n-C16:1) (periplasm)",
"metabolites":{
"2agpg161_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdcea_p":1.0,
"pg161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1G161pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1G161pp"
],
"metanetx.reaction":[
"MNXR102985"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1G180pp",
"name":"Phospholipase A1 (phosphatidylglycerol, n-C18:0) (periplasm)",
"metabolites":{
"2agpg180_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdca_p":1.0,
"pg180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1G180pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1G180pp"
],
"metanetx.reaction":[
"MNXR102986"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP140",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C14:0)",
"metabolites":{
"h2o_c":-1.0,
"pg140_c":1.0,
"pgp140_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP140"
]
},
"annotation":{
"bigg.reaction":[
"PGPP140"
],
"metanetx.reaction":[
"MNXR102561"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP140pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:0)",
"metabolites":{
"h2o_p":-1.0,
"pg140_p":1.0,
"pgp140_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710 or STM0420",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP140pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP140pp"
],
"metanetx.reaction":[
"MNXR102561"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP141",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C14:1)",
"metabolites":{
"h2o_c":-1.0,
"pg141_c":1.0,
"pgp141_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP141"
]
},
"annotation":{
"bigg.reaction":[
"PGPP141"
],
"metanetx.reaction":[
"MNXR102562"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP141pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C14:1)",
"metabolites":{
"h2o_p":-1.0,
"pg141_p":1.0,
"pgp141_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP141pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP141pp"
],
"metanetx.reaction":[
"MNXR102562"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1G181pp",
"name":"Phospholipase A1 (phosphatidylglycerol, n-C18:1) (periplasm)",
"metabolites":{
"2agpg181_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdcea_p":1.0,
"pg181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1G181pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1G181pp"
],
"metanetx.reaction":[
"MNXR102987"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALS",
"name":"Malate synthase",
"metabolites":{
"accoa_c":-1.0,
"coa_c":1.0,
"glx_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"mal__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4183",
"subsystem":"Anaplerotic Reactions",
"notes":{
"original_bigg_ids":[
"MALS"
]
},
"annotation":{
"bigg.reaction":[
"MALS"
],
"biocyc":[
"META:MALSYN-RXN"
],
"ec-code":[
"2.3.3.9"
],
"kegg.reaction":[
"R00472"
],
"metanetx.reaction":[
"MNXR101347"
],
"rhea":[
"18181",
"18182",
"18184",
"18183"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00330"
]
}
},
{
"id":"PLIPA2A120pp",
"name":"Phospholipase A2 (phosphatidate, n-C12:0) (periplasm)",
"metabolites":{
"1ddecg3p_p":1.0,
"ddca_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2A120pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2A120pp"
],
"ec-code":[
"3.1.1.4"
],
"metanetx.reaction":[
"MNXR102989"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2A140pp",
"name":"Phospholipase A2 (phosphatidate, n-C14:0) (periplasm)",
"metabolites":{
"1tdecg3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa140_p":-1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2A140pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2A140pp"
],
"ec-code":[
"3.1.1.4"
],
"metanetx.reaction":[
"MNXR102990"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2A141pp",
"name":"Phospholipase A2 (phosphatidate, n-C14:1) (periplasm)",
"metabolites":{
"1tdec7eg3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pa141_p":-1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2A141pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2A141pp"
],
"ec-code":[
"3.1.1.4"
],
"metanetx.reaction":[
"MNXR102991"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP160",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C16:0)",
"metabolites":{
"h2o_c":-1.0,
"pg160_c":1.0,
"pgp160_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP160"
]
},
"annotation":{
"bigg.reaction":[
"PGPP160"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102563"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09104"
]
}
},
{
"id":"PGPP160pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C16:0)",
"metabolites":{
"h2o_p":-1.0,
"pg160_p":1.0,
"pgp160_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP160pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP160pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102563"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09104"
]
}
},
{
"id":"PGPP161",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C16:1)",
"metabolites":{
"h2o_c":-1.0,
"pg161_c":1.0,
"pgp161_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP161"
]
},
"annotation":{
"bigg.reaction":[
"PGPP161"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102565"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09105"
]
}
},
{
"id":"PLIPA2A160pp",
"name":"Phospholipase A2 (phosphatidate, n-C16:0) (periplasm)",
"metabolites":{
"1hdecg3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdca_p":1.0,
"pa160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2A160pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2A160pp"
],
"ec-code":[
"3.1.1.4"
],
"metanetx.reaction":[
"MNXR102992"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09147"
]
}
},
{
"id":"PGPP161pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C16:1)",
"metabolites":{
"h2o_p":-1.0,
"pg161_p":1.0,
"pgp161_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710 or STM0420",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP161pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP161pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102565"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09105"
]
}
},
{
"id":"MALTATr",
"name":"Maltose O-acetyltransferase",
"metabolites":{
"accoa_c":-1.0,
"acmalt_c":1.0,
"coa_c":1.0,
"malt_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0472",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MALTATr"
]
},
"annotation":{
"bigg.reaction":[
"MALTATr"
],
"biocyc":[
"META:MALTACETYLTRAN-RXN"
],
"ec-code":[
"2.3.1.79"
],
"kegg.reaction":[
"R01556",
"R06251"
],
"metanetx.reaction":[
"MNXR101351"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01133"
]
}
},
{
"id":"PGPP180",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C18:0)",
"metabolites":{
"h2o_c":-1.0,
"pg180_c":1.0,
"pgp180_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP180"
]
},
"annotation":{
"bigg.reaction":[
"PGPP180"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102566"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09106"
]
}
},
{
"id":"PLIPA2A161pp",
"name":"Phospholipase A2 (phosphatidate, n-C16:1) (periplasm)",
"metabolites":{
"1hdec9eg3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdcea_p":1.0,
"pa161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2A161pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2A161pp"
],
"metanetx.reaction":[
"MNXR102993"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2A180pp",
"name":"Phospholipase A2 (phosphatidate, n-C18:0) (periplasm)",
"metabolites":{
"1odecg3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdca_p":1.0,
"pa180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2A180pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2A180pp"
],
"ec-code":[
"3.1.1.4"
],
"metanetx.reaction":[
"MNXR102994"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09149"
]
}
},
{
"id":"PLIPA2A181pp",
"name":"Phospholipase A2 (phosphatidate, n-C18:1) (periplasm)",
"metabolites":{
"1odec11eg3p_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdcea_p":1.0,
"pa181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2A181pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2A181pp"
],
"metanetx.reaction":[
"MNXR102995"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2E120pp",
"name":"Phospholipase A2 (phosphatidylethanolamine, n-C12:0) (periplasm)",
"metabolites":{
"1agpe120_p":1.0,
"ddca_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pe120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2E120pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2E120pp"
],
"metanetx.reaction":[
"MNXR102996"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP180pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:0)",
"metabolites":{
"h2o_p":-1.0,
"pg180_p":1.0,
"pgp180_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710 or STM0420",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP180pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP180pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102566"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09106"
]
}
},
{
"id":"PGPP181",
"name":"Phosphatidylglycerol phosphate phosphatase (n-C18:1)",
"metabolites":{
"h2o_c":-1.0,
"pg181_c":1.0,
"pgp181_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710 or STM0420",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP181"
]
},
"annotation":{
"bigg.reaction":[
"PGPP181"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102567"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGPP181pp",
"name":"Phosphatidylglycerol phosphate phosphatase (periplasm, n-C18:1)",
"metabolites":{
"h2o_p":-1.0,
"pg181_p":1.0,
"pgp181_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0420 or STM1710",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGPP181pp"
]
},
"annotation":{
"bigg.reaction":[
"PGPP181pp"
],
"ec-code":[
"3.1.3.27"
],
"metanetx.reaction":[
"MNXR102567"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGSA120",
"name":"Phosphatidylglycerol synthase (n-C12:0)",
"metabolites":{
"cdpdddecg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp120_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1945",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA120"
]
},
"annotation":{
"bigg.reaction":[
"PGSA120"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102589"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2E140pp",
"name":"Phospholipase A2 (phosphatidylethanolamine, n-C14:0) (periplasm)",
"metabolites":{
"1agpe140_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pe140_p":-1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2E140pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2E140pp"
],
"metanetx.reaction":[
"MNXR102997"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2E141pp",
"name":"Phospholipase A2 (phosphatidylethanolamine, n-C14:1) (periplasm)",
"metabolites":{
"1agpe141_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pe141_p":-1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2E141pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2E141pp"
],
"metanetx.reaction":[
"MNXR102998"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALTHXabcpp",
"name":"Maltohexaose transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"malthx_c":1.0,
"malthx_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4229 and STM4228 and STM4227 and STM4230",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALTHXabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MALTHXabcpp"
],
"metanetx.reaction":[
"MNXR101353"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08869",
"rxn10174"
]
}
},
{
"id":"PLIPA2E160pp",
"name":"Phospholipase A2 (phosphatidylethanolamine, n-C16:0) (periplasm)",
"metabolites":{
"1agpe160_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdca_p":1.0,
"pe160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2E160pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2E160pp"
],
"metanetx.reaction":[
"MNXR102999"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2E161pp",
"name":"Phospholipase A2 (phosphatidylethanolamine, n-C16:1) (periplasm)",
"metabolites":{
"1agpe161_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdcea_p":1.0,
"pe161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2E161pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2E161pp"
],
"metanetx.reaction":[
"MNXR103000"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2E180pp",
"name":"Phospholipase A2 (phosphatidylethanolamine, n-C18:0) (periplasm)",
"metabolites":{
"1agpe180_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdca_p":1.0,
"pe180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2E180pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2E180pp"
],
"metanetx.reaction":[
"MNXR143296"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGSA140",
"name":"Phosphatidylglycerol synthase (n-C14:0)",
"metabolites":{
"cdpdtdecg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp140_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1945",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA140"
]
},
"annotation":{
"bigg.reaction":[
"PGSA140"
],
"metanetx.reaction":[
"MNXR102590"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGSA141",
"name":"Phosphatidylglycerol synthase (n-C14:1)",
"metabolites":{
"cdpdtdec7eg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp141_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1945",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA141"
]
},
"annotation":{
"bigg.reaction":[
"PGSA141"
],
"metanetx.reaction":[
"MNXR102591"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PGSA160",
"name":"Phosphatidylglycerol synthase (n-C16:0)",
"metabolites":{
"cdpdhdecg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp160_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1945",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA160"
]
},
"annotation":{
"bigg.reaction":[
"PGSA160"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102592"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09111"
]
}
},
{
"id":"PGSA161",
"name":"Phosphatidylglycerol synthase (n-C16:1)",
"metabolites":{
"cdpdhdec9eg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp161_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1945",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA161"
]
},
"annotation":{
"bigg.reaction":[
"PGSA161"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102594"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09112"
]
}
},
{
"id":"PGSA180",
"name":"Phosphatidylglycerol synthase (n-C18:0)",
"metabolites":{
"cdpdodecg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp180_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1945",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA180"
]
},
"annotation":{
"bigg.reaction":[
"PGSA180"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102595"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09113"
]
}
},
{
"id":"PGSA181",
"name":"Phosphatidylglycerol synthase (n-C18:1)",
"metabolites":{
"cdpdodec11eg_c":-1.0,
"cmp_c":1.0,
"glyc3p_c":-1.0,
"h_c":1.0,
"pgp181_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1945",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PGSA181"
]
},
"annotation":{
"bigg.reaction":[
"PGSA181"
],
"ec-code":[
"2.7.8.5"
],
"metanetx.reaction":[
"MNXR102596"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2E181pp",
"name":"Phospholipase A2 (phosphatidylethanolamine, n-C18:1) (periplasm)",
"metabolites":{
"1agpe181_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdcea_p":1.0,
"pe181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2E181pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2E181pp"
],
"metanetx.reaction":[
"MNXR103002"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2G120pp",
"name":"Phospholipase A2 (phosphatidylglycerol, n-C12:0) (periplasm)",
"metabolites":{
"1agpg120_p":1.0,
"ddca_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pg120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2G120pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2G120pp"
],
"metanetx.reaction":[
"MNXR103003"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALTHXtexi",
"name":"Maltohexaose transport via diffusion (extracellular to periplasm) irreversible",
"metabolites":{
"malthx_e":-1.0,
"malthx_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4231",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"MALTHXtexi"
]
},
"annotation":{
"bigg.reaction":[
"MALTHXtexi"
],
"metanetx.reaction":[
"MNXR101354"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08870"
]
}
},
{
"id":"PLIPA2G140pp",
"name":"Phospholipase A2 (phosphatidylglycerol, n-C14:0) (periplasm)",
"metabolites":{
"1agpg140_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pg140_p":-1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2G140pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2G140pp"
],
"metanetx.reaction":[
"MNXR103004"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2G141pp",
"name":"Phospholipase A2 (phosphatidylglycerol, n-C14:1) (periplasm)",
"metabolites":{
"1agpg141_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pg141_p":-1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2G141pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2G141pp"
],
"metanetx.reaction":[
"MNXR103005"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PHEMEabcpp",
"name":"Protoheme transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pheme_c":-1.0,
"pheme_p":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2254 and STM2253 and STM2252",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PHEMEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"PHEMEabcpp"
],
"biocyc":[
"META:TRANS-RXN0-162"
],
"ec-code":[
"3.6.3.41"
],
"metanetx.reaction":[
"MNXR102624"
],
"reactome.reaction":[
"R-DDI-382560",
"R-CEL-382560",
"R-DDI-917979",
"R-MMU-382560",
"R-DME-382560",
"R-TGU-382560",
"R-ATH-917979",
"R-BTA-917979",
"R-CFA-382560",
"R-ATH-382560",
"R-SSC-917979",
"R-GGA-917979",
"R-SPO-382560",
"R-SCE-917979",
"R-DRE-382560",
"R-RNO-917979",
"R-GGA-382560",
"R-RNO-382560",
"R-MMU-917979",
"R-BTA-382560",
"R-TGU-917979",
"R-SCE-382560",
"R-PFA-917979",
"R-DRE-917979",
"R-OSA-917979",
"R-HSA-917979",
"R-HSA-382560",
"R-OSA-382560",
"R-SSC-382560",
"R-XTR-917979",
"R-CFA-917979",
"R-XTR-382560"
],
"rhea":[
"19261#1",
"19262#1",
"19264#1",
"19263#1"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PHEMEtiex",
"name":"Protoheme transport irreversible out via diffusion (periplasm to extracellular)",
"metabolites":{
"pheme_e":1.0,
"pheme_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"PHEMEtiex"
]
},
"annotation":{
"bigg.reaction":[
"PHEMEtiex"
],
"metanetx.reaction":[
"MNXR102625"
],
"reactome.reaction":[
"R-CFA-917892",
"R-RNO-917892",
"R-CEL-917892",
"R-BTA-917892",
"R-TGU-917892",
"R-HSA-917892",
"R-MMU-917892",
"R-DRE-917892",
"R-XTR-917892",
"R-SSC-917892",
"R-DME-917892",
"R-GGA-917892"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PHETA1",
"name":"Phenylalanine transaminase",
"metabolites":{
"akg_c":-1.0,
"glu__L_c":1.0,
"phe__L_c":-1.0,
"phpyr_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3903 or STM0998 or STM4248",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"PHETA1"
]
},
"annotation":{
"bigg.reaction":[
"PHETA1"
],
"biocyc":[
"META:PHEAMINOTRANS-RXN",
"META:RXN-10814"
],
"ec-code":[
"2.6.1.57",
"2.6.1.5",
"2.6.1.9",
"2.6.1.1"
],
"kegg.reaction":[
"R00694"
],
"metanetx.reaction":[
"MNXR126234"
],
"rhea":[
"25153",
"25155",
"25152",
"25154"
],
"sabiork":[
"1074"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00493"
]
}
},
{
"id":"PLIPA2G160pp",
"name":"Phospholipase A2 (phosphatidylglycerol, n-C16:0) (periplasm)",
"metabolites":{
"1agpg160_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdca_p":1.0,
"pg160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2G160pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2G160pp"
],
"metanetx.reaction":[
"MNXR103006"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALTPTabcpp",
"name":"Maltopentaose transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"maltpt_c":1.0,
"maltpt_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4229 and STM4228 and STM4227 and STM4230",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALTPTabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MALTPTabcpp"
],
"metanetx.reaction":[
"MNXR101355"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08871",
"rxn10172"
]
}
},
{
"id":"PLIPA2G161pp",
"name":"Phospholipase A2 (phosphatidylglycerol, n-C16:1) (periplasm)",
"metabolites":{
"1agpg161_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"hdcea_p":1.0,
"pg161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2G161pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2G161pp"
],
"metanetx.reaction":[
"MNXR103007"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2G180pp",
"name":"Phospholipase A2 (phosphatidylglycerol, n-C18:0) (periplasm)",
"metabolites":{
"1agpg180_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdca_p":1.0,
"pg180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2G180pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2G180pp"
],
"metanetx.reaction":[
"MNXR103008"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA2G181pp",
"name":"Phospholipase A2 (phosphatidylglycerol, n-C18:1) (periplasm)",
"metabolites":{
"1agpg181_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"ocdcea_p":1.0,
"pg181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA2G181pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA2G181pp"
],
"metanetx.reaction":[
"MNXR103009"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PMDPHT",
"name":"Pyrimidine phosphatase",
"metabolites":{
"4r5au_c":1.0,
"5aprbu_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PMDPHT"
]
},
"annotation":{
"bigg.reaction":[
"PMDPHT"
],
"biocyc":[
"META:RIBOPHOSPHAT-RXN"
],
"ec-code":[
"3.1.3.104",
"3.1.3.-"
],
"kegg.reaction":[
"R07280"
],
"metanetx.reaction":[
"MNXR96145"
],
"rhea":[
"25197",
"25200",
"25198",
"25199"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05039"
]
}
},
{
"id":"PMPK",
"name":"Phosphomethylpyrimidine kinase",
"metabolites":{
"2mahmp_c":1.0,
"4ampm_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2146",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PMPK"
]
},
"annotation":{
"bigg.reaction":[
"PMPK"
],
"ec-code":[
"2.7.4.7"
],
"metanetx.reaction":[
"MNXR143305"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03108"
]
}
},
{
"id":"PHETRS",
"name":"Phenylalanyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"phe__L_c":-1.0,
"phetrna_c":1.0,
"ppi_c":1.0,
"trnaphe_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1338 and STM1337",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"PHETRS"
]
},
"annotation":{
"bigg.reaction":[
"PHETRS"
],
"ec-code":[
"6.1.1.20"
],
"kegg.reaction":[
"R03660"
],
"metanetx.reaction":[
"MNXR102634"
],
"reactome.reaction":[
"R-HSA-379848",
"R-HSA-380203"
],
"sabiork":[
"409"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06444"
]
}
},
{
"id":"PHEt2rpp",
"name":"L-phenylalanine reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"phe__L_c":1.0,
"phe__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0568 or STM0150",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PHEt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"PHEt2rpp"
],
"biocyc":[
"META:TRANS-RXN-56"
],
"metanetx.reaction":[
"MNXR102635"
],
"rhea":[
"28926",
"28923",
"28924",
"28925"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09117",
"rxn09724",
"rxn11337",
"rxn05306"
]
}
},
{
"id":"PHEtex",
"name":"L-phenylalanine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"phe__L_e":-1.0,
"phe__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PHEtex"
]
},
"annotation":{
"bigg.reaction":[
"PHEtex"
],
"biocyc":[
"META:RXN66-445"
],
"metanetx.reaction":[
"MNXR102637"
],
"rhea":[
"27952",
"27951",
"27950",
"27953"
],
"sabiork":[
"13470",
"14018"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11018",
"rxn09118"
]
}
},
{
"id":"PIt2rpp",
"name":"Phosphate reversible transport via symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"pi_c":1.0,
"pi_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3589",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"PIt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"PIt2rpp"
],
"biocyc":[
"META:TRANS-RXN-114"
],
"metanetx.reaction":[
"MNXR102872"
],
"rhea":[
"29939",
"29941",
"29940",
"29942"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05312",
"rxn09833",
"rxn09811",
"rxn09872",
"rxn09723",
"rxn09120"
]
}
},
{
"id":"PItex",
"name":"Phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pi_e":-1.0,
"pi_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PItex"
]
},
"annotation":{
"bigg.reaction":[
"PItex"
],
"biocyc":[
"META:TRANS-RXN0-470"
],
"metanetx.reaction":[
"MNXR102871"
],
"rhea":[
"32824",
"32826",
"32825",
"32823"
],
"sabiork":[
"10985"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10838",
"rxn09722",
"rxn09121",
"rxn13178"
]
}
},
{
"id":"PIuabcpp",
"name":"Phosphate transport via ABC system (uptake, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":2.0,
"pi_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3855 and STM3854 and STM3856 and STM3857",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"PIuabcpp"
]
},
"annotation":{
"bigg.reaction":[
"PIuabcpp"
],
"biocyc":[
"META:ABC-27-RXN"
],
"ec-code":[
"3.6.3.27"
],
"metanetx.reaction":[
"MNXR102870"
],
"rhea":[
"24441#1",
"24442#1",
"24443#1",
"24440#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05145",
"rxn09122"
]
}
},
{
"id":"PNTK",
"name":"Pantothenate kinase",
"metabolites":{
"4ppan_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pnto__R_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4139",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PNTK"
]
},
"annotation":{
"bigg.reaction":[
"PNTK"
],
"biocyc":[
"META:PANTOTHENATE-KIN-RXN"
],
"ec-code":[
"2.7.1.33"
],
"kegg.reaction":[
"R03018"
],
"metanetx.reaction":[
"MNXR103050"
],
"reactome.reaction":[
"R-MMU-199203",
"R-XTR-199203",
"R-HSA-196857",
"R-TGU-196857",
"R-BTA-199203",
"R-DRE-199203",
"R-CFA-199203",
"R-SSC-199203",
"R-CFA-196857",
"R-TGU-199203",
"R-SSC-196857",
"R-PFA-199203",
"R-MMU-196857",
"R-SCE-196857",
"R-RNO-199203",
"R-GGA-199203",
"R-DME-199203",
"R-DRE-196857",
"R-BTA-196857",
"R-HSA-199203",
"R-XTR-196857",
"R-GGA-196857",
"R-DME-196857",
"R-PFA-196857",
"R-SCE-199203",
"R-RNO-196857"
],
"rhea":[
"16376",
"16375",
"16373",
"16374"
],
"sabiork":[
"2868"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn12510"
]
}
},
{
"id":"PNTOt4pp",
"name":"Pantothenate sodium symporter (periplasm)",
"metabolites":{
"na1_c":1.0,
"na1_p":-1.0,
"pnto__R_c":1.0,
"pnto__R_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3382",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PNTOt4pp"
]
},
"annotation":{
"bigg.reaction":[
"PNTOt4pp"
],
"biocyc":[
"META:TRANS-RXN-117"
],
"metanetx.reaction":[
"MNXR103054"
],
"rhea":[
"29927",
"29930",
"29929",
"29928"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09165",
"rxn10180"
]
}
},
{
"id":"PLIPA1A120pp",
"name":"Phospholipase A1 (phosphatidate, n-C12:0) (periplasm)",
"metabolites":{
"2ddecg3p_p":1.0,
"ddca_p":1.0,
"h2o_p":-1.0,
"pa120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1A120pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1A120pp"
],
"ec-code":[
"3.1.1.32"
],
"metanetx.reaction":[
"MNXR102967"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALTPTtexi",
"name":"MaltopentaoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible",
"metabolites":{
"maltpt_e":-1.0,
"maltpt_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4231",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"MALTPTtexi"
]
},
"annotation":{
"bigg.reaction":[
"MALTPTtexi"
],
"metanetx.reaction":[
"MNXR101356"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08873"
]
}
},
{
"id":"PLIPA1A140pp",
"name":"Phospholipase A1 (phosphatidate, n-C14:0) (periplasm)",
"metabolites":{
"2tdecg3p_p":1.0,
"h2o_p":-1.0,
"pa140_p":-1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1A140pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1A140pp"
],
"ec-code":[
"3.1.1.32"
],
"metanetx.reaction":[
"MNXR102968"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PNTOtex",
"name":"Pantothenate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pnto__R_e":-1.0,
"pnto__R_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PNTOtex"
]
},
"annotation":{
"bigg.reaction":[
"PNTOtex"
],
"metanetx.reaction":[
"MNXR103051"
],
"rhea":[
"34978",
"34975",
"34976",
"34977"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09166"
]
}
},
{
"id":"POX",
"name":"Pyruvate oxidase",
"metabolites":{
"ac_c":1.0,
"co2_c":1.0,
"h2o_c":-1.0,
"pyr_c":-1.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0935",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"POX"
]
},
"annotation":{
"bigg.reaction":[
"POX"
],
"metanetx.reaction":[
"MNXR103067"
],
"rhea":[
"29168",
"29170",
"29167",
"29169"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09167"
]
}
},
{
"id":"PLIPA1A141pp",
"name":"Phospholipase A1 (phosphatidate, n-C14:1) (periplasm)",
"metabolites":{
"2tdec7eg3p_p":1.0,
"h2o_p":-1.0,
"pa141_p":-1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1A141pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1A141pp"
],
"ec-code":[
"3.1.1.32"
],
"metanetx.reaction":[
"MNXR102969"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPA",
"name":"Inorganic diphosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":2.0,
"ppi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4414 or STM2502 or STM2927",
"subsystem":"Anaplerotic Reactions",
"notes":{
"original_bigg_ids":[
"PPA"
]
},
"annotation":{
"bigg.reaction":[
"PPA"
],
"biocyc":[
"META:INORGPYROPHOSPHAT-RXN"
],
"ec-code":[
"3.6.1.1"
],
"kegg.reaction":[
"R00004"
],
"metanetx.reaction":[
"MNXR100808"
],
"reactome.reaction":[
"R-GGA-6788912",
"R-HSA-449937",
"R-RNO-449937",
"R-DME-449937",
"R-RNO-71732",
"R-SSC-449937",
"R-HSA-71732",
"R-SCE-449937",
"R-SSC-71732",
"R-GGA-71732",
"R-DRE-6788912",
"R-TGU-6788912",
"R-DRE-71732",
"R-PFA-71732",
"R-BTA-6788912",
"R-CEL-71732",
"R-SPO-71732",
"R-MMU-449937",
"R-ATH-449937",
"R-CFA-6788912",
"R-DRE-449937",
"R-MMU-71732",
"R-OSA-71732",
"R-XTR-449937",
"R-CFA-71732",
"R-ATH-71732",
"R-SSC-6788912",
"R-CEL-449937",
"R-OSA-449937",
"R-BTA-449937",
"R-XTR-6788912",
"R-GGA-449937",
"R-BTA-71732",
"R-DDI-71732",
"R-HSA-6788912",
"R-SCE-71732",
"R-SPO-449937",
"R-TGU-449937",
"R-CEL-6788912",
"R-MMU-6788912",
"R-PFA-449937",
"R-TGU-71732",
"R-XTR-71732",
"R-CFA-449937",
"R-RNO-6788912",
"R-DME-71732",
"R-DDI-449937"
],
"rhea":[
"24577",
"24576",
"24579",
"24578"
],
"sabiork":[
"76"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00001",
"rxn11226"
]
}
},
{
"id":"PLIPA1A160pp",
"name":"Phospholipase A1 (phosphatidate, n-C16:0) (periplasm)",
"metabolites":{
"2hdecg3p_p":1.0,
"h2o_p":-1.0,
"hdca_p":1.0,
"pa160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1A160pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1A160pp"
],
"ec-code":[
"3.1.1.32"
],
"metanetx.reaction":[
"MNXR102970"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09126"
]
}
},
{
"id":"PPA2",
"name":"Inorganic triphosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ppi_c":1.0,
"pppi_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2927 or STM2502",
"subsystem":"Anaplerotic Reactions",
"notes":{
"original_bigg_ids":[
"PPA2"
]
},
"annotation":{
"bigg.reaction":[
"PPA2"
],
"biocyc":[
"META:TRIPHOSPHATASE-RXN"
],
"ec-code":[
"3.6.1.25"
],
"kegg.reaction":[
"R00138"
],
"metanetx.reaction":[
"MNXR103069"
],
"rhea":[
"14158",
"14160",
"14157",
"14159"
],
"sabiork":[
"707"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00106"
]
}
},
{
"id":"MALTTRabcpp",
"name":"Maltotriose transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"malttr_c":1.0,
"malttr_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4229 and STM4228 and STM4227 and STM4230",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALTTRabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MALTTRabcpp"
],
"biocyc":[
"META:TRANS-RXN0-503"
],
"ec-code":[
"3.6.3"
],
"metanetx.reaction":[
"MNXR101358"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05608",
"rxn08875"
]
}
},
{
"id":"PLIPA1A161pp",
"name":"Phospholipase A1 (phosphatidate, n-C16:1) (periplasm)",
"metabolites":{
"2hdec9eg3p_p":1.0,
"h2o_p":-1.0,
"hdcea_p":1.0,
"pa161_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1A161pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1A161pp"
],
"metanetx.reaction":[
"MNXR102971"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1A180pp",
"name":"Phospholipase A1 (phosphatidate, n-C18:0) (periplasm)",
"metabolites":{
"2odecg3p_p":1.0,
"h2o_p":-1.0,
"ocdca_p":1.0,
"pa180_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1A180pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1A180pp"
],
"ec-code":[
"3.1.1.32"
],
"metanetx.reaction":[
"MNXR102972"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09128"
]
}
},
{
"id":"PPAKr",
"name":"Propionate kinase",
"metabolites":{
"adp_c":-1.0,
"atp_c":1.0,
"ppa_c":1.0,
"ppap_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3242 or STM2057 or STM2337",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PPAKr"
]
},
"annotation":{
"bigg.reaction":[
"PPAKr"
],
"ec-code":[
"2.7.2.15"
],
"metanetx.reaction":[
"MNXR95897"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALTTRtexi",
"name":"Maltotriose transport via diffusion (extracellular to periplasm) irreversible",
"metabolites":{
"malttr_e":-1.0,
"malttr_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4231",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"MALTTRtexi"
]
},
"annotation":{
"bigg.reaction":[
"MALTTRtexi"
],
"metanetx.reaction":[
"MNXR101359"
],
"sabiork":[
"11212"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08876"
]
}
},
{
"id":"PPALtex",
"name":"Propanal transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ppal_e":-1.0,
"ppal_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PPALtex"
]
},
"annotation":{
"bigg.reaction":[
"PPALtex"
],
"metanetx.reaction":[
"MNXR103071"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09169",
"rxn09170"
]
}
},
{
"id":"PPALtpp",
"name":"Propanal transport via channel (periplasm)",
"metabolites":{
"ppal_c":-1.0,
"ppal_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PPALtpp"
]
},
"annotation":{
"bigg.reaction":[
"PPALtpp"
],
"metanetx.reaction":[
"MNXR103071"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09169",
"rxn09170"
]
}
},
{
"id":"PPAt4pp",
"name":"Na+/Propionate symporter (periplasm)",
"metabolites":{
"na1_c":1.0,
"na1_p":-1.0,
"ppa_c":1.0,
"ppa_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1125",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PPAt4pp"
]
},
"annotation":{
"bigg.reaction":[
"PPAt4pp"
],
"metanetx.reaction":[
"MNXR103093"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PLIPA1A181pp",
"name":"Phospholipase A1 (phosphatidate, n-C18:1) (periplasm)",
"metabolites":{
"2odec11eg3p_p":1.0,
"h2o_p":-1.0,
"ocdcea_p":1.0,
"pa181_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1A181pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1A181pp"
],
"metanetx.reaction":[
"MNXR102973"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1E120pp",
"name":"Phospholipase A1 (phosphatidylethanolamine, n-C12:0) (periplasm)",
"metabolites":{
"2agpe120_p":1.0,
"ddca_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pe120_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1E120pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1E120pp"
],
"metanetx.reaction":[
"MNXR102974"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PLIPA1E140pp",
"name":"Phospholipase A1 (phosphatidylethanolamine, n-C14:0) (periplasm)",
"metabolites":{
"2agpe140_p":1.0,
"h2o_p":-1.0,
"h_p":1.0,
"pe140_p":-1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3957",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PLIPA1E140pp"
]
},
"annotation":{
"bigg.reaction":[
"PLIPA1E140pp"
],
"metanetx.reaction":[
"MNXR102975"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPAtex",
"name":"Propionate transport via diffusion",
"metabolites":{
"ppa_e":-1.0,
"ppa_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1473 or STM0999 or STM2267 or STM0320",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PPAtex"
]
},
"annotation":{
"bigg.reaction":[
"PPAtex"
],
"metanetx.reaction":[
"MNXR103094"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PPBNGS",
"name":"Porphobilinogen synthase",
"metabolites":{
"5aop_c":-2.0,
"h2o_c":2.0,
"h_c":1.0,
"ppbng_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0372",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPBNGS"
]
},
"annotation":{
"bigg.reaction":[
"PPBNGS"
],
"biocyc":[
"META:PORPHOBILSYNTH-RXN"
],
"ec-code":[
"4.2.1.24"
],
"kegg.reaction":[
"R00036"
],
"metanetx.reaction":[
"MNXR103095"
],
"reactome.reaction":[
"R-GGA-421472",
"R-DME-189439",
"R-SCE-189439",
"R-RNO-189439",
"R-HSA-189439",
"R-BTA-189439",
"R-MMU-189439",
"R-TGU-189439",
"R-OSA-189439",
"R-DDI-189439",
"R-ATH-189439",
"R-DRE-189439",
"R-PFA-189439",
"R-XTR-189439",
"R-GGA-189439",
"R-CFA-189439",
"R-SPO-189439"
],
"rhea":[
"24064",
"24066",
"24067",
"24065"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00029"
]
}
},
{
"id":"PPC",
"name":"Phosphoenolpyruvate carboxylase",
"metabolites":{
"co2_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"oaa_c":1.0,
"pep_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4119",
"subsystem":"Anaplerotic Reactions",
"notes":{
"original_bigg_ids":[
"PPC"
]
},
"annotation":{
"bigg.reaction":[
"PPC"
],
"ec-code":[
"4.1.1.31"
],
"kegg.reaction":[
"R00345"
],
"metanetx.reaction":[
"MNXR103096"
],
"rhea":[
"23073",
"23072",
"23075",
"23074"
],
"sabiork":[
"150"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00251"
]
}
},
{
"id":"PRAIi",
"name":"Phosphoribosylanthranilate isomerase (irreversible)",
"metabolites":{
"2cpr5p_c":1.0,
"pran_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1725",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"PRAIi"
]
},
"annotation":{
"bigg.reaction":[
"PRAIi"
],
"biocyc":[
"META:PRAISOM-RXN"
],
"ec-code":[
"5.3.1.24"
],
"kegg.reaction":[
"R03509"
],
"metanetx.reaction":[
"MNXR103156"
],
"rhea":[
"21543",
"21542",
"21540",
"21541"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02508"
]
}
},
{
"id":"MALTTTRabcpp",
"name":"Maltotetraose transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"maltttr_c":1.0,
"maltttr_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4229 and STM4228 and STM4227 and STM4230",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALTTTRabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MALTTTRabcpp"
],
"biocyc":[
"META:TRANS-RXN0-504"
],
"ec-code":[
"3.6.3"
],
"metanetx.reaction":[
"MNXR101360"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08877",
"rxn10173"
]
}
},
{
"id":"PRAMPC",
"name":"Phosphoribosyl-AMP cyclohydrolase",
"metabolites":{
"h2o_c":-1.0,
"prbamp_c":-1.0,
"prfp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2078",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"PRAMPC"
]
},
"annotation":{
"bigg.reaction":[
"PRAMPC"
],
"biocyc":[
"META:HISTCYCLOHYD-RXN"
],
"ec-code":[
"3.5.4.19"
],
"kegg.reaction":[
"R04037"
],
"metanetx.reaction":[
"MNXR103154"
],
"rhea":[
"20049",
"20050",
"20051",
"20052"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02835"
]
}
},
{
"id":"PPCDC",
"name":"Phosphopantothenoylcysteine decarboxylase",
"metabolites":{
"4ppcys_c":-1.0,
"co2_c":1.0,
"h_c":-1.0,
"pan4p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3730",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPCDC"
]
},
"annotation":{
"bigg.reaction":[
"PPCDC"
],
"biocyc":[
"META:P-PANTOCYSDECARB-RXN"
],
"ec-code":[
"4.1.1.36"
],
"kegg.reaction":[
"R03269"
],
"metanetx.reaction":[
"MNXR103098"
],
"reactome.reaction":[
"R-BTA-196840",
"R-HSA-196840",
"R-SSC-196840",
"R-CFA-196840",
"R-GGA-196840",
"R-XTR-196840",
"R-ATH-196840",
"R-SCE-196840",
"R-PFA-196840",
"R-MMU-196840",
"R-OSA-196840",
"R-DRE-196840",
"R-DDI-196840",
"R-DME-196840",
"R-TGU-196840",
"R-RNO-196840",
"R-CEL-196840"
],
"rhea":[
"16793",
"16796",
"16794",
"16795"
],
"sabiork":[
"3090"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02341"
]
}
},
{
"id":"PPCK",
"name":"Phosphoenolpyruvate carboxykinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"co2_c":1.0,
"oaa_c":-1.0,
"pep_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3500",
"subsystem":"Anaplerotic Reactions",
"notes":{
"original_bigg_ids":[
"PPCK"
]
},
"annotation":{
"bigg.reaction":[
"PPCK"
],
"biocyc":[
"META:PEPCARBOXYKIN-RXN"
],
"ec-code":[
"4.1.1.49"
],
"kegg.reaction":[
"R00341"
],
"metanetx.reaction":[
"MNXR103099"
],
"rhea":[
"18620",
"18618",
"18617",
"18619"
],
"sabiork":[
"151"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00247"
]
}
},
{
"id":"PPGPPDP",
"name":"Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase",
"metabolites":{
"gdp_c":1.0,
"h2o_c":-1.0,
"ppgpp_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3742",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPGPPDP"
]
},
"annotation":{
"bigg.reaction":[
"PPGPPDP"
],
"biocyc":[
"META:PPGPPSYN-RXN"
],
"ec-code":[
"3.1.7.2"
],
"kegg.reaction":[
"R00336"
],
"metanetx.reaction":[
"MNXR103109"
],
"rhea":[
"14254",
"14255",
"14256",
"14253"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00242"
]
}
},
{
"id":"PPK2",
"name":"Polyphosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"ppi_c":-1.0,
"pppi_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2501",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"PPK2r"
]
},
"annotation":{
"bigg.reaction":[
"PPK2"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PRASCSi",
"name":"Phosphoribosylaminoimidazolesuccinocarboxamide synthase",
"metabolites":{
"25aics_c":1.0,
"5aizc_c":-1.0,
"adp_c":1.0,
"asp__L_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2487",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"PRASCSi"
]
},
"annotation":{
"bigg.reaction":[
"PRASCSi"
],
"biocyc":[
"META:SAICARSYN-RXN"
],
"ec-code":[
"6.3.2.6"
],
"kegg.reaction":[
"R04591"
],
"metanetx.reaction":[
"MNXR108987"
],
"reactome.reaction":[
"R-TGU-73805",
"R-DME-73805",
"R-GGA-419223",
"R-GGA-73805",
"R-CEL-73805",
"R-HSA-73805",
"R-BTA-73805",
"R-XTR-73805",
"R-DRE-73805",
"R-RNO-73805",
"R-CFA-73805",
"R-MMU-73805",
"R-SSC-73805"
],
"rhea":[
"22631",
"22628",
"22629",
"22630"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALTTTRtexi",
"name":"MaltotetraoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible",
"metabolites":{
"maltttr_e":-1.0,
"maltttr_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4231",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"MALTTTRtexi"
]
},
"annotation":{
"bigg.reaction":[
"MALTTTRtexi"
],
"metanetx.reaction":[
"MNXR101361"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08878"
]
}
},
{
"id":"PRATPP",
"name":"Phosphoribosyl-ATP pyrophosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"ppi_c":1.0,
"prbamp_c":1.0,
"prbatp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2078",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"PRATPP"
]
},
"annotation":{
"bigg.reaction":[
"PRATPP"
],
"biocyc":[
"META:HISTPRATPHYD-RXN"
],
"ec-code":[
"3.6.1.31"
],
"kegg.reaction":[
"R04035"
],
"metanetx.reaction":[
"MNXR103155"
],
"rhea":[
"22829",
"22828",
"22830",
"22831"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02834"
]
}
},
{
"id":"PRFGS",
"name":"Phosphoribosylformylglycinamidine synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fgam_c":-1.0,
"fpram_c":1.0,
"gln__L_c":-1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2565",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"PRFGS"
]
},
"annotation":{
"bigg.reaction":[
"PRFGS"
],
"ec-code":[
"6.3.5.3"
],
"metanetx.reaction":[
"MNXR138721"
],
"reactome.reaction":[
"R-DME-73812",
"R-DDI-73812",
"R-DRE-73812",
"R-GGA-73812",
"R-MMU-73812",
"R-RNO-73812",
"R-SCE-73812",
"R-SSC-73812",
"R-XTR-73812",
"R-HSA-73812",
"R-BTA-73812",
"R-ATH-73812",
"R-GGA-419144",
"R-CEL-73812",
"R-CFA-73812",
"R-SPO-73812",
"R-OSA-73812"
],
"rhea":[
"17132",
"17129",
"17131",
"17130"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPK",
"name":"Polyphosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"pi_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2501",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"PPKr"
]
},
"annotation":{
"bigg.reaction":[
"PPK"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPM",
"name":"Phosphopentomutase",
"metabolites":{
"r1p_c":-1.0,
"r5p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4569",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PPM"
]
},
"annotation":{
"bigg.reaction":[
"PPM"
],
"biocyc":[
"META:RXN-14456"
],
"ec-code":[
"5.4.2.7",
"5.4.2.2",
"5.4.2"
],
"metanetx.reaction":[
"MNXR103115"
],
"sabiork":[
"2261"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PPM2",
"name":"Phosphopentomutase 2 (deoxyribose)",
"metabolites":{
"2dr1p_c":-1.0,
"2dr5p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4569",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PPM2"
]
},
"annotation":{
"bigg.reaction":[
"PPM2"
],
"biocyc":[
"META:D-PPENTOMUT-RXN"
],
"ec-code":[
"5.4.2.7"
],
"kegg.reaction":[
"R02749"
],
"metanetx.reaction":[
"MNXR103116"
],
"rhea":[
"25208",
"27660",
"25206",
"25205",
"27661",
"27658",
"25207",
"27659"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01986"
]
}
},
{
"id":"MALTabcpp",
"name":"Maltose transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"malt_c":1.0,
"malt_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4229 and STM4228 and STM4227 and STM4230",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALTabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MALTabcpp"
],
"biocyc":[
"META:3.6.3.19-RXN",
"META:ABC-16-RXN"
],
"ec-code":[
"3.6.3.19"
],
"metanetx.reaction":[
"MNXR101362"
],
"rhea":[
"22134#1",
"22135#1",
"22132#1",
"22133#1"
],
"sabiork":[
"12365#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08867",
"rxn05170"
]
}
},
{
"id":"PPNCL2",
"name":"Phosphopantothenate-cysteine ligase",
"metabolites":{
"4ppan_c":-1.0,
"4ppcys_c":1.0,
"cmp_c":1.0,
"ctp_c":-1.0,
"cys__L_c":-1.0,
"h_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3730",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPNCL2"
]
},
"annotation":{
"bigg.reaction":[
"PPNCL2"
],
"biocyc":[
"META:P-PANTOCYSLIG-RXN"
],
"ec-code":[
"6.3.2.5"
],
"kegg.reaction":[
"R04231"
],
"metanetx.reaction":[
"MNXR103119"
],
"rhea":[
"19399",
"19400",
"19397",
"19398"
],
"sabiork":[
"3942"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09177"
]
}
},
{
"id":"PRMICI",
"name":"1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase",
"metabolites":{
"prfp_c":-1.0,
"prlp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2076",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"PRMICI"
]
},
"annotation":{
"bigg.reaction":[
"PRMICI"
],
"biocyc":[
"META:PRIBFAICARPISOM-RXN"
],
"ec-code":[
"5.3.1.16"
],
"kegg.reaction":[
"R04640"
],
"metanetx.reaction":[
"MNXR103169"
],
"rhea":[
"15471",
"15472",
"15469",
"15470"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03175"
]
}
},
{
"id":"PROD2",
"name":"Proline dehydrogenase",
"metabolites":{
"1pyr5c_c":1.0,
"fad_c":-1.0,
"fadh2_c":1.0,
"h_c":1.0,
"pro__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1124",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"PROD2"
]
},
"annotation":{
"bigg.reaction":[
"PROD2"
],
"ec-code":[
"1.5.-.-",
"1.5.99.8"
],
"kegg.reaction":[
"R10507"
],
"metanetx.reaction":[
"MNXR103187"
],
"rhea":[
"26124",
"26127",
"26125",
"26126"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09188"
]
}
},
{
"id":"PPND",
"name":"Prephenate dehydrogenase",
"metabolites":{
"34hpp_c":1.0,
"co2_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"pphn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2669",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"PPND"
]
},
"annotation":{
"bigg.reaction":[
"PPND"
],
"biocyc":[
"META:PREPHENATEDEHYDROG-RXN"
],
"ec-code":[
"1.3.1.12"
],
"kegg.reaction":[
"R01728"
],
"metanetx.reaction":[
"MNXR103121"
],
"rhea":[
"13872",
"13870",
"13869",
"13871"
],
"sabiork":[
"1839"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01268"
]
}
},
{
"id":"PROGLYabcpp",
"name":"L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"progly_c":1.0,
"progly_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3630 and STM3629 and STM3628 and STM3627 and STM3626",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PROGLYabcpp"
]
},
"annotation":{
"bigg.reaction":[
"PROGLYabcpp"
],
"metanetx.reaction":[
"MNXR103190"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09189"
]
}
},
{
"id":"MALTptspp",
"name":"Maltose transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"malt6p_c":1.0,
"malt_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2433 and STM1465 and STM2431 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALTptspp"
]
},
"annotation":{
"bigg.reaction":[
"MALTptspp"
],
"metanetx.reaction":[
"MNXR101363"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08872",
"rxn05607"
]
}
},
{
"id":"PROGLYtex",
"name":"L-Prolinylglycine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"progly_e":-1.0,
"progly_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PROGLYtex"
]
},
"annotation":{
"bigg.reaction":[
"PROGLYtex"
],
"metanetx.reaction":[
"MNXR103191"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09190"
]
}
},
{
"id":"PROTRS",
"name":"Prolyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"pro__L_c":-1.0,
"protrna_c":1.0,
"trnapro_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0242",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"PROTRS"
]
},
"annotation":{
"bigg.reaction":[
"PROTRS"
],
"ec-code":[
"6.1.1.15"
],
"kegg.reaction":[
"R03661"
],
"metanetx.reaction":[
"MNXR103208"
],
"reactome.reaction":[
"R-HSA-380198",
"R-HSA-379865"
],
"sabiork":[
"404"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06445"
]
}
},
{
"id":"PROabcpp",
"name":"L-proline transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"pro__L_c":1.0,
"pro__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2809 and STM2810 and STM2811",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PROabcpp"
]
},
"annotation":{
"bigg.reaction":[
"PROabcpp"
],
"biocyc":[
"META:ABC-26-RXN"
],
"metanetx.reaction":[
"MNXR103210"
],
"rhea":[
"29816#1",
"29817#1",
"29815#1",
"29818#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09187",
"rxn05165"
]
}
},
{
"id":"PROt4pp",
"name":"Na+/Proline-L symporter (periplasm)",
"metabolites":{
"na1_c":1.0,
"na1_p":-1.0,
"pro__L_c":1.0,
"pro__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1125",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PROt4pp"
]
},
"annotation":{
"bigg.reaction":[
"PROt4pp"
],
"biocyc":[
"META:TRANS-RXN-118"
],
"metanetx.reaction":[
"MNXR103197"
],
"reactome.reaction":[
"R-MMU-352052",
"R-BTA-352052",
"R-HSA-352052",
"R-CEL-352052",
"R-TGU-352052",
"R-CFA-352052",
"R-SSC-352052",
"R-GGA-352052",
"R-RNO-352052"
],
"rhea":[
"28968",
"28969",
"28970",
"28967"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05221",
"rxn09192"
]
}
},
{
"id":"PPNDH",
"name":"Prephenate dehydratase",
"metabolites":{
"co2_c":1.0,
"h2o_c":1.0,
"h_c":-1.0,
"phpyr_c":1.0,
"pphn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2667",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"PPNDH"
]
},
"annotation":{
"bigg.reaction":[
"PPNDH"
],
"biocyc":[
"META:PREPHENATEDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.91",
"4.2.1.51"
],
"kegg.reaction":[
"R01373"
],
"metanetx.reaction":[
"MNXR126086"
],
"rhea":[
"21648",
"21649",
"21650",
"21651"
],
"sabiork":[
"1575"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01000"
]
}
},
{
"id":"PPPGO",
"name":"Protoporphyrinogen oxidase (aerobic)",
"metabolites":{
"h2o_c":3.0,
"o2_c":-1.5,
"ppp9_c":1.0,
"pppg9_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3987",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPPGO"
]
},
"annotation":{
"bigg.reaction":[
"PPPGO"
],
"ec-code":[
"1.3.3.4"
],
"metanetx.reaction":[
"MNXR103128"
],
"reactome.reaction":[
"R-GGA-421452"
],
"sabiork":[
"3048"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09179",
"rxn02304"
]
}
},
{
"id":"PPPGO3",
"name":"Protoporphyrinogen oxidase (anaerobic)",
"metabolites":{
"fum_c":-3.0,
"ppp9_c":1.0,
"pppg9_c":-1.0,
"succ_c":3.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3987",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PPPGO3"
]
},
"annotation":{
"bigg.reaction":[
"PPPGO3"
],
"ec-code":[
"1.3.3.4"
],
"metanetx.reaction":[
"MNXR103130"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09180"
]
}
},
{
"id":"PPPNt2rpp",
"name":"3-phenylpropionate transport via proton symport, reversible (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"pppn_c":1.0,
"pppn_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2554",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PPPNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"PPPNt2rpp"
],
"metanetx.reaction":[
"MNXR103135"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09182",
"rxn10133"
]
}
},
{
"id":"PPPNtex",
"name":"3-phenylpropionate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pppn_e":-1.0,
"pppn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PPPNtex"
]
},
"annotation":{
"bigg.reaction":[
"PPPNtex"
],
"biocyc":[
"META:TRANS-RXN0-282"
],
"metanetx.reaction":[
"MNXR103136"
],
"rhea":[
"29748",
"29750",
"29749",
"29747"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09183"
]
}
},
{
"id":"PPS",
"name":"Phosphoenolpyruvate synthase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"pep_c":1.0,
"pi_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1349",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"PPS"
]
},
"annotation":{
"bigg.reaction":[
"PPS"
],
"biocyc":[
"META:PEPSYNTH-RXN"
],
"ec-code":[
"2.7.9.2"
],
"kegg.reaction":[
"R00199"
],
"metanetx.reaction":[
"MNXR103140"
],
"rhea":[
"11364",
"11367",
"11366",
"11365"
],
"sabiork":[
"148"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00147"
]
}
},
{
"id":"PPTtex",
"name":"Phosphonate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ppt_e":-1.0,
"ppt_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PPTtex"
]
},
"annotation":{
"bigg.reaction":[
"PPTtex"
],
"metanetx.reaction":[
"MNXR103151"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09185"
]
}
},
{
"id":"PROtex",
"name":"L-proline transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pro__L_e":-1.0,
"pro__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PROtex"
]
},
"annotation":{
"bigg.reaction":[
"PROtex"
],
"metanetx.reaction":[
"MNXR103213"
],
"sabiork":[
"12183",
"13974"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09720",
"rxn09193",
"rxn11339",
"rxn10945"
]
}
},
{
"id":"PRPPS",
"name":"Phosphoribosylpyrophosphate synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"prpp_c":1.0,
"r5p_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1780",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"PRPPS"
]
},
"annotation":{
"bigg.reaction":[
"PRPPS"
],
"ec-code":[
"2.7.6.1"
],
"metanetx.reaction":[
"MNXR103215"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSCLYStex",
"name":"Psicoselysine transporter via diffusion (extracellular)",
"metabolites":{
"psclys_e":-1.0,
"psclys_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2267 or STM1473 or STM0320 or STM0999",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PSCLYStex"
]
},
"annotation":{
"bigg.reaction":[
"PSCLYStex"
],
"biocyc":[
"META:TRANS-RXN0-418"
],
"metanetx.reaction":[
"MNXR103228"
],
"rhea":[
"28450",
"28453",
"28451",
"28452"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09196"
]
}
},
{
"id":"PSCVT",
"name":"3-phosphoshikimate 1-carboxyvinyltransferase",
"metabolites":{
"3psme_c":1.0,
"pep_c":-1.0,
"pi_c":1.0,
"skm5p_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0978",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"PSCVT"
]
},
"annotation":{
"bigg.reaction":[
"PSCVT"
],
"biocyc":[
"META:2.5.1.19-RXN"
],
"ec-code":[
"2.5.1.19"
],
"kegg.reaction":[
"R03460"
],
"metanetx.reaction":[
"MNXR103226"
],
"reactome.reaction":[
"R-MTU-964886"
],
"rhea":[
"21259",
"21257",
"21256",
"21258"
],
"sabiork":[
"3254"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02476"
]
}
},
{
"id":"PSD120",
"name":"Phosphatidylserine decarboxylase (n-C12:0)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe120_c":1.0,
"ps120_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4348",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD120"
]
},
"annotation":{
"bigg.reaction":[
"PSD120"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103229"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PRAGSr",
"name":"Phosphoribosylglycinamide synthase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"gar_c":1.0,
"gly_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"pram_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4175",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"PRAGSr"
]
},
"annotation":{
"bigg.reaction":[
"PRAGSr"
],
"biocyc":[
"META:GLYRIBONUCSYN-RXN"
],
"ec-code":[
"6.3.4.13"
],
"kegg.reaction":[
"R04144"
],
"metanetx.reaction":[
"MNXR103139"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02895"
]
}
},
{
"id":"PRAIS",
"name":"Phosphoribosylaminoimidazole synthase",
"metabolites":{
"adp_c":1.0,
"air_c":1.0,
"atp_c":-1.0,
"fpram_c":-1.0,
"h_c":2.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2499_S",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"PRAIS"
]
},
"annotation":{
"bigg.reaction":[
"PRAIS"
],
"ec-code":[
"6.3.3.1"
],
"metanetx.reaction":[
"MNXR138720"
],
"rhea":[
"23033",
"23032",
"23034",
"23035"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MALTtexi",
"name":"MaltoseMaltotriose transport via diffusion (extracellular to periplasm) irreversible",
"metabolites":{
"malt_e":-1.0,
"malt_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4231",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"MALTtexi"
]
},
"annotation":{
"bigg.reaction":[
"MALTtexi"
],
"biocyc":[
"META:RXN-14351",
"META:TRANS-RXN0-575",
"META:RXN0-1741"
],
"metanetx.reaction":[
"MNXR101364"
],
"rhea":[
"33173",
"33172",
"33171",
"33174"
],
"sabiork":[
"11211"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08874"
]
}
},
{
"id":"EX_airs_e",
"name":"Aminoimidazole riboside exchange",
"metabolites":{
"airs_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_airs_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_airs_e"
],
"metanetx.reaction":[
"MNXR95648"
],
"sbo":"SBO:0000627"
}
},
{
"id":"PSD140",
"name":"Phosphatidylserine decarboxylase (n-C14:0)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe140_c":1.0,
"ps140_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4348",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD140"
]
},
"annotation":{
"bigg.reaction":[
"PSD140"
],
"metanetx.reaction":[
"MNXR103230"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSD141",
"name":"Phosphatidylserine decarboxylase (n-C14:1)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe141_c":1.0,
"ps141_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4348",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD141"
]
},
"annotation":{
"bigg.reaction":[
"PSD141"
],
"metanetx.reaction":[
"MNXR103231"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSD160",
"name":"Phosphatidylserine decarboxylase (n-C16:0)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe160_c":1.0,
"ps160_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4348",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD160"
]
},
"annotation":{
"bigg.reaction":[
"PSD160"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103232"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09200"
]
}
},
{
"id":"MALt2_2pp",
"name":"Malate transport via proton symport (2 H) (periplasm)",
"metabolites":{
"h_c":2.0,
"h_p":-2.0,
"mal__L_c":1.0,
"mal__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3614",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALt2_2pp"
]
},
"annotation":{
"bigg.reaction":[
"MALt2_2pp"
],
"biocyc":[
"META:TRANS-RXN-121A"
],
"metanetx.reaction":[
"MNXR101370"
],
"rhea":[
"29341",
"29340",
"29342",
"29339"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08865",
"rxn10153"
]
}
},
{
"id":"PSD161",
"name":"Phosphatidylserine decarboxylase (n-C16:1)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe161_c":1.0,
"ps161_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4348",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD161"
]
},
"annotation":{
"bigg.reaction":[
"PSD161"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103233"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSD180",
"name":"Phosphatidylserine decarboxylase (n-C18:0)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe180_c":1.0,
"ps180_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4348",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD180"
]
},
"annotation":{
"bigg.reaction":[
"PSD180"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103234"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09202"
]
}
},
{
"id":"SERASr",
"name":"(L-seryl)adenylate synthase",
"metabolites":{
"atp_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0,
"ser__L_c":-1.0,
"seramp_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0588",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"SERASr"
]
},
"annotation":{
"bigg.reaction":[
"SERASr"
],
"biocyc":[
"META:ENTF-RXN"
],
"metanetx.reaction":[
"MNXR104332"
],
"rhea":[
"28571",
"28573",
"28570",
"28572"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09245",
"rxn00418"
]
}
},
{
"id":"PSD181",
"name":"Phosphatidylserine decarboxylase (n-C18:1)",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"pe181_c":1.0,
"ps181_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4348",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSD181"
]
},
"annotation":{
"bigg.reaction":[
"PSD181"
],
"ec-code":[
"4.1.1.65"
],
"metanetx.reaction":[
"MNXR103235"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSERT",
"name":"Phosphoserine transaminase",
"metabolites":{
"3php_c":-1.0,
"akg_c":1.0,
"glu__L_c":-1.0,
"pser__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0977",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"PSERT"
]
},
"annotation":{
"bigg.reaction":[
"PSERT"
],
"biocyc":[
"META:PSERTRANSAM-RXN"
],
"ec-code":[
"2.6.1.52"
],
"kegg.reaction":[
"R04173"
],
"metanetx.reaction":[
"MNXR103225"
],
"reactome.reaction":[
"R-DRE-977333",
"R-DDI-977333",
"R-CEL-977333",
"R-BTA-977333",
"R-HSA-977333",
"R-SPO-977333",
"R-XTR-977333",
"R-CFA-977333",
"R-DME-977333",
"R-GGA-977333",
"R-MMU-977333",
"R-SCE-977333",
"R-RNO-977333",
"R-ATH-977333",
"R-OSA-977333",
"R-TGU-977333",
"R-SSC-977333"
],
"rhea":[
"14331",
"14329",
"14330",
"14332"
],
"sabiork":[
"3893"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02914"
]
}
},
{
"id":"PSERtex",
"name":"Phospho-L-serine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pser__L_e":-1.0,
"pser__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PSERtex"
]
},
"annotation":{
"bigg.reaction":[
"PSERtex"
],
"metanetx.reaction":[
"MNXR103246"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09204"
]
}
},
{
"id":"PSP_L",
"name":"Phosphoserine phosphatase (L-serine)",
"metabolites":{
"h2o_c":-1.0,
"pi_c":1.0,
"pser__L_c":-1.0,
"ser__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4578",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"PSP_L"
]
},
"annotation":{
"bigg.reaction":[
"PSP_L"
],
"biocyc":[
"META:RXN0-5114"
],
"ec-code":[
"3.1.3.3"
],
"kegg.reaction":[
"R00582"
],
"metanetx.reaction":[
"MNXR103260"
],
"reactome.reaction":[
"R-MMU-977324",
"R-CFA-977324",
"R-DME-977324",
"R-DRE-977324",
"R-SCE-977324",
"R-GGA-977324",
"R-BTA-977324",
"R-SSC-977324",
"R-HSA-977324",
"R-DDI-977324",
"R-SPO-977324",
"R-ATH-977324",
"R-XTR-977324",
"R-CEL-977324",
"R-OSA-977324",
"R-RNO-977324",
"R-TGU-977324"
],
"rhea":[
"21208",
"21211",
"21210",
"21209"
],
"sabiork":[
"10330",
"983"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00420"
]
}
},
{
"id":"PSP_Lpp",
"name":"Phospho-L-serine phosphatase (periplasmic)",
"metabolites":{
"h2o_p":-1.0,
"pi_p":1.0,
"pser__L_p":-1.0,
"ser__L_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"PSP_Lpp"
]
},
"annotation":{
"bigg.reaction":[
"PSP_Lpp"
],
"biocyc":[
"META:RXN0-5114"
],
"ec-code":[
"3.1.3.3"
],
"kegg.reaction":[
"R00582"
],
"metanetx.reaction":[
"MNXR103260"
],
"reactome.reaction":[
"R-MMU-977324",
"R-CFA-977324",
"R-DME-977324",
"R-DRE-977324",
"R-SCE-977324",
"R-GGA-977324",
"R-BTA-977324",
"R-SSC-977324",
"R-HSA-977324",
"R-DDI-977324",
"R-SPO-977324",
"R-ATH-977324",
"R-XTR-977324",
"R-CEL-977324",
"R-OSA-977324",
"R-RNO-977324",
"R-TGU-977324"
],
"rhea":[
"21208",
"21211",
"21210",
"21209"
],
"sabiork":[
"10330",
"983"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00420"
]
}
},
{
"id":"PSSA120",
"name":"Phosphatidylserine syntase (n-C12:0)",
"metabolites":{
"cdpdddecg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps120_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2652",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA120"
]
},
"annotation":{
"bigg.reaction":[
"PSSA120"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103266"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSSA140",
"name":"Phosphatidylserine syntase (n-C14:0)",
"metabolites":{
"cdpdtdecg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps140_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2652",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA140"
]
},
"annotation":{
"bigg.reaction":[
"PSSA140"
],
"metanetx.reaction":[
"MNXR103267"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSSA141",
"name":"Phosphatidylserine syntase (n-C14:1)",
"metabolites":{
"cdpdtdec7eg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps141_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2652",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA141"
]
},
"annotation":{
"bigg.reaction":[
"PSSA141"
],
"metanetx.reaction":[
"MNXR103268"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSSA160",
"name":"Phosphatidylserine syntase (n-C16:0)",
"metabolites":{
"cdpdhdecg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps160_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2652",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA160"
]
},
"annotation":{
"bigg.reaction":[
"PSSA160"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103269"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09208"
]
}
},
{
"id":"PSSA161",
"name":"Phosphatidylserine syntase (n-C16:1)",
"metabolites":{
"cdpdhdec9eg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps161_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2652",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA161"
]
},
"annotation":{
"bigg.reaction":[
"PSSA161"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103270"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSSA180",
"name":"Phosphatidylserine syntase (n-C18:0)",
"metabolites":{
"cdpdodecg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps180_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2652",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA180"
]
},
"annotation":{
"bigg.reaction":[
"PSSA180"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103271"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09210"
]
}
},
{
"id":"PSSA181",
"name":"Phosphatidylserine syntase (n-C18:1)",
"metabolites":{
"cdpdodec11eg_c":-1.0,
"cmp_c":1.0,
"h_c":1.0,
"ps181_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2652",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"PSSA181"
]
},
"annotation":{
"bigg.reaction":[
"PSSA181"
],
"ec-code":[
"2.7.8.8"
],
"metanetx.reaction":[
"MNXR103272"
],
"sbo":"SBO:0000176"
}
},
{
"id":"R5PP",
"name":"Ribose 5-phosphate phosphatase",
"metabolites":{
"h2o_c":-1.0,
"pi_c":1.0,
"r5p_c":-1.0,
"rib__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0840 or STM0842",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"R5PP"
]
},
"annotation":{
"bigg.reaction":[
"R5PP"
],
"metanetx.reaction":[
"MNXR103410"
],
"sbo":"SBO:0000176"
}
},
{
"id":"R5PPpp",
"name":"Ribose 5-phosphate phosphatase",
"metabolites":{
"h2o_p":-1.0,
"pi_p":1.0,
"r5p_p":-1.0,
"rib__D_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"R5PPpp"
]
},
"annotation":{
"bigg.reaction":[
"R5PPpp"
],
"metanetx.reaction":[
"MNXR103410"
],
"sbo":"SBO:0000176"
}
},
{
"id":"R5Ptex",
"name":"Ribose 5-phosphate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"r5p_e":-1.0,
"r5p_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"R5Ptex"
]
},
"annotation":{
"bigg.reaction":[
"R5Ptex"
],
"metanetx.reaction":[
"MNXR103411"
],
"sbo":"SBO:0000185"
}
},
{
"id":"RBFK",
"name":"Riboflavin kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fmn_c":1.0,
"h_c":1.0,
"ribflv_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0045",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"RBFK"
]
},
"annotation":{
"bigg.reaction":[
"RBFK"
],
"biocyc":[
"META:RIBOFLAVINKIN-RXN"
],
"ec-code":[
"2.7.1.26"
],
"kegg.reaction":[
"R00549"
],
"metanetx.reaction":[
"MNXR103429"
],
"reactome.reaction":[
"R-TGU-196964",
"R-RNO-196964",
"R-SPO-196964",
"R-CEL-196964",
"R-HSA-196964",
"R-MMU-196964",
"R-DME-196964",
"R-BTA-196964",
"R-SSC-196964",
"R-CFA-196964",
"R-GGA-196964",
"R-XTR-196964",
"R-SCE-196964",
"R-DRE-196964",
"R-PFA-196964"
],
"rhea":[
"14360",
"14359",
"14358",
"14357"
],
"sabiork":[
"277"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00392"
]
}
},
{
"id":"RBFSa",
"name":"Riboflavin synthase",
"metabolites":{
"4r5au_c":-1.0,
"db4p_c":-1.0,
"dmlz_c":1.0,
"h2o_c":2.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1426",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"RBFSa"
]
},
"annotation":{
"bigg.reaction":[
"RBFSa"
],
"ec-code":[
"2.5.1.9",
"2.5.1.78"
],
"kegg.reaction":[
"R04457"
],
"metanetx.reaction":[
"MNXR97501"
],
"sabiork":[
"8561"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03080"
]
}
},
{
"id":"RBFSb",
"name":"Riboflavin synthase",
"metabolites":{
"4r5au_c":1.0,
"dmlz_c":-2.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0417",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"RBFSb"
]
},
"annotation":{
"bigg.reaction":[
"RBFSb"
],
"biocyc":[
"META:RIBOFLAVIN-SYN-RXN"
],
"ec-code":[
"2.5.1.9"
],
"kegg.reaction":[
"R00066"
],
"metanetx.reaction":[
"MNXR103430"
],
"rhea":[
"20773",
"20774",
"20775",
"20772"
],
"sabiork":[
"653"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00048"
]
}
},
{
"id":"RBK",
"name":"Ribokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"r5p_c":1.0,
"rib__D_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3885 or STM3793",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"RBK"
]
},
"annotation":{
"bigg.reaction":[
"RBK"
],
"ec-code":[
"2.7.1.15"
],
"metanetx.reaction":[
"MNXR103431"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PTA2",
"name":"Phosphate acetyltransferase",
"metabolites":{
"coa_c":1.0,
"pi_c":-1.0,
"ppap_c":1.0,
"ppcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2338 or STM2047",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PTA2"
]
},
"annotation":{
"bigg.reaction":[
"PTA2"
],
"biocyc":[
"META:PTAALT-RXN"
],
"ec-code":[
"2.3.1.8",
"2.3.1.222"
],
"kegg.reaction":[
"R00921"
],
"metanetx.reaction":[
"MNXR102416"
],
"rhea":[
"28046",
"28049",
"28048",
"28047"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00670"
]
}
},
{
"id":"PTAr",
"name":"Phosphotransacetylase",
"metabolites":{
"accoa_c":-1.0,
"actp_c":1.0,
"coa_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2338 or STM2466",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"PTAr"
]
},
"annotation":{
"bigg.reaction":[
"PTAr"
],
"biocyc":[
"META:PHOSACETYLTRANS-RXN"
],
"ec-code":[
"2.3.1.8"
],
"kegg.reaction":[
"R00230"
],
"metanetx.reaction":[
"MNXR103319"
],
"rhea":[
"19521",
"19523",
"19522",
"19524"
],
"sabiork":[
"72"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00173"
]
}
},
{
"id":"PTHRpp",
"name":"Phospho-L-threonine phosphatase (periplasmic)",
"metabolites":{
"h2o_p":-1.0,
"pi_p":1.0,
"thr__L_p":1.0,
"thrp_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"PTHRpp"
]
},
"annotation":{
"bigg.reaction":[
"PTHRpp"
],
"biocyc":[
"META:RXN-14505"
],
"ec-code":[
"3.1.3"
],
"metanetx.reaction":[
"MNXR103332"
],
"rhea":[
"30582",
"30580",
"30581",
"30579"
],
"sabiork":[
"10700"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09212"
]
}
},
{
"id":"PTPATi",
"name":"Pantetheine-phosphate adenylyltransferase",
"metabolites":{
"atp_c":-1.0,
"dpcoa_c":1.0,
"h_c":-1.0,
"pan4p_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3725",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PTPATi"
]
},
"annotation":{
"bigg.reaction":[
"PTPATi"
],
"biocyc":[
"META:PANTEPADENYLYLTRAN-RXN"
],
"ec-code":[
"2.7.7.3"
],
"kegg.reaction":[
"R03035"
],
"metanetx.reaction":[
"MNXR95892"
],
"reactome.reaction":[
"R-CFA-196754",
"R-ATH-196754",
"R-SSC-196754",
"R-DDI-196754",
"R-XTR-196754",
"R-CEL-196754",
"R-RNO-196754",
"R-PFA-196754",
"R-GGA-196754",
"R-HSA-196754",
"R-SCE-196754",
"R-DRE-196754",
"R-TGU-196754",
"R-OSA-196754",
"R-MMU-196754",
"R-BTA-196754",
"R-DME-196754"
],
"rhea":[
"19803",
"19802",
"19801",
"19804"
],
"sabiork":[
"2884",
"12078"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02175"
]
}
},
{
"id":"RBK_L1",
"name":"L-ribulokinase (L-ribulose)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"rbl__L_c":-1.0,
"ru5p__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0103",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"RBK_L1"
]
},
"annotation":{
"bigg.reaction":[
"RBK_L1"
],
"biocyc":[
"META:RXN0-5116"
],
"ec-code":[
"2.7.1.16"
],
"kegg.reaction":[
"R02439"
],
"metanetx.reaction":[
"MNXR103433"
],
"rhea":[
"22075",
"22072",
"22074",
"22073"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01763"
]
}
},
{
"id":"RBP4E",
"name":"L-ribulose-phosphate 4-epimerase",
"metabolites":{
"ru5p__L_c":-1.0,
"xu5p__D_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0101 or STM4388 or STM3677",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"RBP4E"
]
},
"annotation":{
"bigg.reaction":[
"RBP4E"
],
"biocyc":[
"META:RIBULPEPIM-RXN"
],
"ec-code":[
"5.1.3.4"
],
"kegg.reaction":[
"R05850"
],
"metanetx.reaction":[
"MNXR103434"
],
"rhea":[
"22370",
"22371",
"22368",
"22369"
],
"sabiork":[
"67"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04082"
]
}
},
{
"id":"PTRCORNt7pp",
"name":"Putrescine/ornithine antiporter (periplasm)",
"metabolites":{
"orn_c":-1.0,
"orn_p":1.0,
"ptrc_c":1.0,
"ptrc_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0700",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PTRCORNt7pp"
]
},
"annotation":{
"bigg.reaction":[
"PTRCORNt7pp"
],
"biocyc":[
"META:TRANS-RXN0-211"
],
"metanetx.reaction":[
"MNXR103336"
],
"rhea":[
"28828",
"28830",
"28829",
"28827"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10182",
"rxn09214"
]
}
},
{
"id":"SERAT",
"name":"Serine O-acetyltransferase",
"metabolites":{
"accoa_c":-1.0,
"acser_c":1.0,
"coa_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3699",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"SERAT"
]
},
"annotation":{
"bigg.reaction":[
"SERAT"
],
"biocyc":[
"META:SERINE-O-ACETTRAN-RXN"
],
"ec-code":[
"2.3.1.30"
],
"kegg.reaction":[
"R00586"
],
"metanetx.reaction":[
"MNXR104275"
],
"reactome.reaction":[
"R-MTU-936615"
],
"rhea":[
"24560",
"24563",
"24562",
"24561"
],
"sabiork":[
"986"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00423"
]
}
},
{
"id":"PTRCTA",
"name":"Putrescine Transaminase",
"metabolites":{
"4abutn_c":1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"ptrc_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3218",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"PTRCTA"
]
},
"annotation":{
"bigg.reaction":[
"PTRCTA"
],
"biocyc":[
"META:PUTTRANSAM-RXN"
],
"ec-code":[
"2.6.1.29",
"2.6.1.82"
],
"kegg.reaction":[
"R01155"
],
"metanetx.reaction":[
"MNXR103337"
],
"rhea":[
"23817",
"23819",
"23816",
"23818"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07225",
"rxn00856"
]
}
},
{
"id":"PTRCabcpp",
"name":"Putrescine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ptrc_c":1.0,
"ptrc_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0877 and STM0878 and STM0879 and STM0880) or (STM1226 and STM1225 and STM1223 and STM1222)",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PTRCabcpp"
]
},
"annotation":{
"bigg.reaction":[
"PTRCabcpp"
],
"biocyc":[
"META:ABC-25-RXN"
],
"ec-code":[
"3.6.3.31"
],
"metanetx.reaction":[
"MNXR103338"
],
"rhea":[
"29998#1",
"29996#1",
"29995#1",
"29997#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11263",
"rxn05163",
"rxn09213"
]
}
},
{
"id":"RHAT1",
"name":"Rhamnosyltransferase I (LPS core biosynthesis)",
"metabolites":{
"dtdp_c":1.0,
"dtdprmn_c":-1.0,
"h_c":1.0,
"icolipa_c":1.0,
"kphphhlipa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3720",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"RHAT1"
]
},
"annotation":{
"bigg.reaction":[
"RHAT1"
],
"metanetx.reaction":[
"MNXR104025"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RHCCE",
"name":"S-ribosylhomocysteine cleavage enzyme",
"metabolites":{
"dhptd_c":1.0,
"hcys__L_c":1.0,
"rhcys_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2817",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"RHCCE"
]
},
"annotation":{
"bigg.reaction":[
"RHCCE"
],
"biocyc":[
"META:RIBOSYLHOMOCYSTEINASE-RXN"
],
"ec-code":[
"4.4.1.21"
],
"kegg.reaction":[
"R01291"
],
"metanetx.reaction":[
"MNXR104026"
],
"rhea":[
"17754",
"17753",
"17756",
"17755"
],
"sabiork":[
"6873"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn14169",
"rxn05958"
]
}
},
{
"id":"RIBabcpp",
"name":"D-ribose transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"rib__D_c":1.0,
"rib__D_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3882 and STM3884 and STM3883 and STM3881",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"RIBabcpp"
]
},
"annotation":{
"bigg.reaction":[
"RIBabcpp"
],
"biocyc":[
"META:ABC-28-RXN"
],
"ec-code":[
"3.6.3.17"
],
"metanetx.reaction":[
"MNXR104034"
],
"rhea":[
"29904#1",
"29905#1",
"29903#1",
"29906#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05160",
"rxn09227"
]
}
},
{
"id":"PTRCt2pp",
"name":"Putrescine transport in via proton symport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ptrc_c":1.0,
"ptrc_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0700",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PTRCt2pp"
]
},
"annotation":{
"bigg.reaction":[
"PTRCt2pp"
],
"biocyc":[
"META:TRANS-RXN-69"
],
"metanetx.reaction":[
"MNXR103340"
],
"rhea":[
"28891",
"28892",
"28894",
"28893"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05687",
"rxn09215"
]
}
},
{
"id":"PTRCtex",
"name":"Putrescine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ptrc_e":-1.0,
"ptrc_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PTRCtex"
]
},
"annotation":{
"bigg.reaction":[
"PTRCtex"
],
"metanetx.reaction":[
"MNXR103339"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09216",
"rxn13393"
]
}
},
{
"id":"RIBtex",
"name":"Ribose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"rib__D_e":-1.0,
"rib__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"RIBtex"
]
},
"annotation":{
"bigg.reaction":[
"RIBtex"
],
"metanetx.reaction":[
"MNXR104036"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09228"
]
}
},
{
"id":"SERD_D",
"name":"D-serine deaminase",
"metabolites":{
"nh4_c":1.0,
"pyr_c":1.0,
"ser__D_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3802",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"SERD_D"
]
},
"annotation":{
"bigg.reaction":[
"SERD_D"
],
"biocyc":[
"META:DSERDEAM-RXN"
],
"ec-code":[
"4.3.1.18"
],
"kegg.reaction":[
"R00221"
],
"metanetx.reaction":[
"MNXR104338"
],
"rhea":[
"13980",
"13979",
"13977",
"13978"
],
"sabiork":[
"746"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00166"
]
}
},
{
"id":"RMI",
"name":"L-rhamnose isomerase",
"metabolites":{
"rml_c":1.0,
"rmn_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4046",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"RMI"
]
},
"annotation":{
"bigg.reaction":[
"RMI"
],
"ec-code":[
"5.3.1.14"
],
"kegg.reaction":[
"R02437"
],
"metanetx.reaction":[
"MNXR104038"
],
"rhea":[
"23161",
"23163",
"23160",
"23162"
],
"sabiork":[
"2372"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01761"
]
}
},
{
"id":"PUNP1",
"name":"Purine-nucleoside phosphorylase (Adenosine)",
"metabolites":{
"ade_c":1.0,
"adn_c":-1.0,
"pi_c":-1.0,
"r1p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4570",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"PUNP1"
]
},
"annotation":{
"bigg.reaction":[
"PUNP1"
],
"biocyc":[
"META:ADENPHOSPHOR-RXN"
],
"ec-code":[
"2.4.2.1"
],
"kegg.reaction":[
"R01561"
],
"metanetx.reaction":[
"MNXR103343"
],
"rhea":[
"27644",
"27645",
"27643",
"27642"
],
"sabiork":[
"133"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01138"
]
}
},
{
"id":"PUNP2",
"name":"Purine-nucleoside phosphorylase (Deoxyadenosine)",
"metabolites":{
"2dr1p_c":1.0,
"ade_c":1.0,
"dad_2_c":-1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4570",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"PUNP2"
]
},
"annotation":{
"bigg.reaction":[
"PUNP2"
],
"biocyc":[
"META:DEOXYADENPHOSPHOR-RXN"
],
"ec-code":[
"2.4.2.1"
],
"kegg.reaction":[
"R02557"
],
"metanetx.reaction":[
"MNXR103344"
],
"rhea":[
"27743",
"27742",
"27745",
"27744"
],
"sabiork":[
"342"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01859"
]
}
},
{
"id":"PUNP3",
"name":"Purine-nucleoside phosphorylase (Guanosine)",
"metabolites":{
"gsn_c":-1.0,
"gua_c":1.0,
"pi_c":-1.0,
"r1p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4570",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"PUNP3"
]
},
"annotation":{
"bigg.reaction":[
"PUNP3"
],
"biocyc":[
"META:RXN0-5199"
],
"ec-code":[
"2.4.2.15",
"2.4.2.1"
],
"kegg.reaction":[
"R02147"
],
"metanetx.reaction":[
"MNXR103345"
],
"rhea":[
"13236",
"13234",
"13235",
"13233"
],
"sabiork":[
"187"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01548"
]
}
},
{
"id":"RMK",
"name":"Rhamnulokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"rml1p_c":1.0,
"rml_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4047",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"RMK"
]
},
"annotation":{
"bigg.reaction":[
"RMK"
],
"ec-code":[
"2.7.1.5"
],
"kegg.reaction":[
"R03014"
],
"metanetx.reaction":[
"MNXR104039"
],
"rhea":[
"20119",
"20117",
"20118",
"20120"
],
"sabiork":[
"2864"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02161"
]
}
},
{
"id":"SERTRS",
"name":"Seryl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"ser__L_c":-1.0,
"sertrna_c":1.0,
"trnaser_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0963",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"SERTRS"
]
},
"annotation":{
"bigg.reaction":[
"SERTRS"
],
"ec-code":[
"6.1.1.11"
],
"kegg.reaction":[
"R03662"
],
"metanetx.reaction":[
"MNXR104350"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06446"
]
}
},
{
"id":"RMNtex",
"name":"L-rhamnose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"rmn_e":-1.0,
"rmn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"RMNtex"
]
},
"annotation":{
"bigg.reaction":[
"RMNtex"
],
"metanetx.reaction":[
"MNXR104042"
],
"rhea":[
"34995",
"34998",
"34997",
"34996"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09229"
]
}
},
{
"id":"RMNtpp",
"name":"L-rhamnose transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"rmn_c":1.0,
"rmn_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4050",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"RMNtpp"
]
},
"annotation":{
"bigg.reaction":[
"RMNtpp"
],
"biocyc":[
"META:TRANS-RXN-112"
],
"metanetx.reaction":[
"MNXR104041"
],
"rhea":[
"29949",
"29950",
"29948",
"29947"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05646",
"rxn09230"
]
}
},
{
"id":"PUNP4",
"name":"Purine-nucleoside phosphorylase (Deoxyguanosine)",
"metabolites":{
"2dr1p_c":1.0,
"dgsn_c":-1.0,
"gua_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2422 or STM4570",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"PUNP4"
]
},
"annotation":{
"bigg.reaction":[
"PUNP4"
],
"biocyc":[
"META:DEOXYGUANPHOSPHOR-RXN"
],
"ec-code":[
"2.4.2.1",
"2.4.2.4"
],
"kegg.reaction":[
"R01969"
],
"metanetx.reaction":[
"MNXR103346"
],
"rhea":[
"27741",
"27738",
"27740",
"27739"
],
"sabiork":[
"360"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01446"
]
}
},
{
"id":"PUNP5",
"name":"Purine-nucleoside phosphorylase (Inosine)",
"metabolites":{
"hxan_c":1.0,
"ins_c":-1.0,
"pi_c":-1.0,
"r1p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4570",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"PUNP5"
]
},
"annotation":{
"bigg.reaction":[
"PUNP5"
],
"biocyc":[
"META:INOPHOSPHOR-RXN"
],
"ec-code":[
"2.4.2.15",
"2.4.2.1"
],
"kegg.reaction":[
"R01863"
],
"metanetx.reaction":[
"MNXR103347"
],
"reactome.reaction":[
"R-GGA-421174"
],
"rhea":[
"27649",
"27647",
"27648",
"27646"
],
"sabiork":[
"125"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01358"
]
}
},
{
"id":"PUNP6",
"name":"Purine-nucleoside phosphorylase (Deoxyinosine)",
"metabolites":{
"2dr1p_c":1.0,
"din_c":-1.0,
"hxan_c":1.0,
"pi_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4570",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"PUNP6"
]
},
"annotation":{
"bigg.reaction":[
"PUNP6"
],
"biocyc":[
"META:DEOXYINOPHOSPHOR-RXN"
],
"ec-code":[
"2.4.2.1",
"2.4.2.4"
],
"kegg.reaction":[
"R02748"
],
"metanetx.reaction":[
"MNXR103348"
],
"rhea":[
"27750",
"27751",
"27753",
"27752"
],
"sabiork":[
"348"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01985"
]
}
},
{
"id":"PUNP7",
"name":"Purine-nucleoside phosphorylase (Xanthosine)",
"metabolites":{
"pi_c":-1.0,
"r1p_c":1.0,
"xan_c":1.0,
"xtsn_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2422",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"PUNP7"
]
},
"annotation":{
"bigg.reaction":[
"PUNP7"
],
"biocyc":[
"META:XANTHOSINEPHOSPHORY-RXN"
],
"ec-code":[
"2.4.2.1",
"2.4.2.-"
],
"kegg.reaction":[
"R02297"
],
"metanetx.reaction":[
"MNXR103349"
],
"rhea":[
"27639",
"27638",
"27640",
"27641"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01649"
]
}
},
{
"id":"PYAM5PO",
"name":"Pyridoxamine 5'-phosphate oxidase",
"metabolites":{
"h2o2_c":1.0,
"h2o_c":-1.0,
"nh4_c":1.0,
"o2_c":-1.0,
"pyam5p_c":-1.0,
"pydx5p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1448",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PYAM5PO"
]
},
"annotation":{
"bigg.reaction":[
"PYAM5PO"
],
"biocyc":[
"META:PMPOXI-RXN"
],
"ec-code":[
"1.4.3.5"
],
"kegg.reaction":[
"R00277"
],
"metanetx.reaction":[
"MNXR103355"
],
"reactome.reaction":[
"R-BTA-965079",
"R-CEL-965079",
"R-XTR-965079",
"R-HSA-965079",
"R-CFA-965079",
"R-GGA-965079",
"R-SSC-965079",
"R-SCE-965079",
"R-RNO-965079",
"R-DRE-965079",
"R-SPO-965079",
"R-DME-965079",
"R-DDI-965079",
"R-MMU-965079"
],
"rhea":[
"15818",
"15819",
"15820",
"15817"
],
"sabiork":[
"777"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00208"
]
}
},
{
"id":"PYDAMK",
"name":"Pyridoxamine kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pyam5p_c":1.0,
"pydam_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2435",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PYDAMK"
]
},
"annotation":{
"bigg.reaction":[
"PYDAMK"
],
"biocyc":[
"META:PYRAMKIN-RXN"
],
"ec-code":[
"2.7.1.35"
],
"kegg.reaction":[
"R02493"
],
"metanetx.reaction":[
"MNXR103357"
],
"reactome.reaction":[
"R-DDI-964958",
"R-OSA-964958",
"R-SCE-964958",
"R-CFA-964958",
"R-HSA-964958",
"R-SSC-964958",
"R-MMU-964958",
"R-SPO-964958",
"R-BTA-964958",
"R-DRE-964958",
"R-XTR-964958",
"R-ATH-964958",
"R-CEL-964958",
"R-RNO-964958",
"R-DME-964958",
"R-TGU-964958",
"R-GGA-964958"
],
"rhea":[
"25104",
"25106",
"25107",
"25105"
],
"sabiork":[
"2423"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01807"
]
}
},
{
"id":"PYDXK",
"name":"Pyridoxal kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pydx5p_c":1.0,
"pydx_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2435 or STM1450",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PYDXK"
]
},
"annotation":{
"bigg.reaction":[
"PYDXK"
],
"biocyc":[
"META:PYRIDOXKIN-RXN"
],
"ec-code":[
"2.7.1.35"
],
"kegg.reaction":[
"R00174"
],
"metanetx.reaction":[
"MNXR103361"
],
"reactome.reaction":[
"R-OSA-964970",
"R-CFA-964970",
"R-DDI-964970",
"R-BTA-964970",
"R-DME-964970",
"R-SSC-964970",
"R-XTR-964970",
"R-ATH-964970",
"R-TGU-964970",
"R-SCE-964970",
"R-MMU-964970",
"R-CEL-964970",
"R-GGA-964970",
"R-HSA-964970",
"R-RNO-964970",
"R-SPO-964970",
"R-DRE-964970"
],
"rhea":[
"10225",
"10227",
"10226",
"10224"
],
"sabiork":[
"729"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00124"
]
}
},
{
"id":"RMPA",
"name":"Rhamnulose-1-phosphate aldolase",
"metabolites":{
"dhap_c":1.0,
"lald__L_c":1.0,
"rml1p_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4045",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"RMPA"
]
},
"annotation":{
"bigg.reaction":[
"RMPA"
],
"biocyc":[
"META:RHAMNULPALDOL-RXN"
],
"ec-code":[
"4.1.2.19"
],
"kegg.reaction":[
"R02263"
],
"metanetx.reaction":[
"MNXR104043"
],
"rhea":[
"19689",
"19691",
"19690",
"19692"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01621"
]
}
},
{
"id":"RNDR1",
"name":"Ribonucleoside-diphosphate reductase (ADP)",
"metabolites":{
"adp_c":-1.0,
"dadp_c":1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2277 and STM2278) or (STM2807 and STM2808)",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNDR1"
]
},
"annotation":{
"bigg.reaction":[
"RNDR1"
],
"biocyc":[
"META:ADPREDUCT-RXN"
],
"ec-code":[
"1.17.4.1"
],
"kegg.reaction":[
"R02017"
],
"metanetx.reaction":[
"MNXR104060"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05231"
]
}
},
{
"id":"RNDR1b",
"name":"Ribonucleoside-diphosphate reductase (ADP) (glutaredoxin)",
"metabolites":{
"adp_c":-1.0,
"dadp_c":1.0,
"grxox_c":1.0,
"grxrd_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1433 and (STM2807 and STM2808)) or (STM0872 and (STM2807 and STM2808)) or (STM1165 and (STM2807 and STM2808)) or (STM3702 and (STM2807 and STM2808))",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNDR1b"
]
},
"annotation":{
"bigg.reaction":[
"RNDR1b"
],
"metanetx.reaction":[
"MNXR104061"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09231"
]
}
},
{
"id":"RNDR2",
"name":"Ribonucleoside-diphosphate reductase (GDP)",
"metabolites":{
"dgdp_c":1.0,
"gdp_c":-1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2277 and STM2278) or (STM2807 and STM2808)",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNDR2"
]
},
"annotation":{
"bigg.reaction":[
"RNDR2"
],
"biocyc":[
"META:GDPREDUCT-RXN"
],
"ec-code":[
"1.17.4.1"
],
"kegg.reaction":[
"R02019"
],
"metanetx.reaction":[
"MNXR104062"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05233"
]
}
},
{
"id":"PYDXNK",
"name":"Pyridoxine kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pdx5p_c":1.0,
"pydxn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2435",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PYDXNK"
]
},
"annotation":{
"bigg.reaction":[
"PYDXNK"
],
"biocyc":[
"META:PNKIN-RXN"
],
"ec-code":[
"2.7.1.35"
],
"kegg.reaction":[
"R01909"
],
"metanetx.reaction":[
"MNXR103362"
],
"reactome.reaction":[
"R-BTA-964962",
"R-CFA-964962",
"R-HSA-964962",
"R-OSA-964962",
"R-ATH-964962",
"R-SCE-964962",
"R-DRE-964962",
"R-CEL-964962",
"R-DDI-964962",
"R-TGU-964962",
"R-DME-964962",
"R-XTR-964962",
"R-GGA-964962",
"R-MMU-964962",
"R-SPO-964962",
"R-SSC-964962",
"R-RNO-964962"
],
"rhea":[
"25111",
"25110",
"25109",
"25108"
],
"sabiork":[
"1963"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01396"
]
}
},
{
"id":"RNDR2b",
"name":"Ribonucleoside-diphosphate reductase (GDP) (glutaredoxin)",
"metabolites":{
"dgdp_c":1.0,
"gdp_c":-1.0,
"grxox_c":1.0,
"grxrd_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM3702 and (STM2807 and STM2808)) or (STM1165 and (STM2807 and STM2808)) or (STM1433 and (STM2807 and STM2808)) or (STM0872 and (STM2807 and STM2808))",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNDR2b"
]
},
"annotation":{
"bigg.reaction":[
"RNDR2b"
],
"metanetx.reaction":[
"MNXR104063"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09232"
]
}
},
{
"id":"SERTRS2",
"name":"Seryl-tRNA synthetase (selenocystein)",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"ser__L_c":-1.0,
"sertrna_sec_c":1.0,
"trnasecys_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0963",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"SERTRS2"
]
},
"annotation":{
"bigg.reaction":[
"SERTRS2"
],
"ec-code":[
"6.1.1.11"
],
"metanetx.reaction":[
"MNXR104309"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09249"
]
}
},
{
"id":"RNDR3",
"name":"Ribonucleoside-diphosphate reductase (CDP)",
"metabolites":{
"cdp_c":-1.0,
"dcdp_c":1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2277 and STM2278) or (STM2807 and STM2808)",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNDR3"
]
},
"annotation":{
"bigg.reaction":[
"RNDR3"
],
"biocyc":[
"META:CDPREDUCT-RXN"
],
"ec-code":[
"1.17.4.1"
],
"kegg.reaction":[
"R02024"
],
"metanetx.reaction":[
"MNXR104064"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06076"
]
}
},
{
"id":"PYDXPP",
"name":"Pyridoxal 5-phosphate phosphatase",
"metabolites":{
"h2o_c":-1.0,
"pi_c":1.0,
"pydx5p_c":-1.0,
"pydx_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"PYDXPP"
]
},
"annotation":{
"bigg.reaction":[
"PYDXPP"
],
"biocyc":[
"META:3.1.3.74-RXN"
],
"ec-code":[
"3.1.3.74"
],
"kegg.reaction":[
"R00173"
],
"metanetx.reaction":[
"MNXR103368"
],
"rhea":[
"20536",
"20535",
"20534",
"20533"
],
"sabiork":[
"728"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00123"
]
}
},
{
"id":"PYK",
"name":"Pyruvate kinase",
"metabolites":{
"adp_c":-1.0,
"atp_c":1.0,
"h_c":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1888 or STM1378",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"PYK"
]
},
"annotation":{
"bigg.reaction":[
"PYK"
],
"biocyc":[
"META:PEPDEPHOS-RXN"
],
"ec-code":[
"2.7.1.40"
],
"kegg.reaction":[
"R00200"
],
"metanetx.reaction":[
"MNXR103371"
],
"reactome.reaction":[
"R-SSC-71670",
"R-GGA-353056",
"R-DRE-71670",
"R-OSA-71670",
"R-SPO-71670",
"R-DDI-71670",
"R-SCE-71670",
"R-CEL-71670",
"R-PFA-71670",
"R-HSA-71670",
"R-TGU-71670",
"R-DME-71670",
"R-ATH-71670",
"R-BTA-71670",
"R-MMU-71670",
"R-RNO-71670",
"R-GGA-71670",
"R-CFA-71670",
"R-XTR-71670"
],
"rhea":[
"18160",
"18159",
"18158",
"18157"
],
"sabiork":[
"9"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00148"
]
}
},
{
"id":"PYNP2r",
"name":"Pyrimidine-nucleoside phosphorylase (uracil)",
"metabolites":{
"pi_c":-1.0,
"r1p_c":1.0,
"ura_c":1.0,
"uri_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3968",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"PYNP2r"
]
},
"annotation":{
"bigg.reaction":[
"PYNP2r"
],
"biocyc":[
"META:URPHOS-RXN"
],
"ec-code":[
"2.4.2.3",
"2.4.2.2"
],
"kegg.reaction":[
"R01876"
],
"metanetx.reaction":[
"MNXR103377"
],
"rhea":[
"24391",
"24388",
"24390",
"24389"
],
"sabiork":[
"204"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01366"
]
}
},
{
"id":"RNDR3b",
"name":"Ribonucleoside-diphosphate reductase (CDP) (glutaredoxin)",
"metabolites":{
"cdp_c":-1.0,
"dcdp_c":1.0,
"grxox_c":1.0,
"grxrd_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1433 and (STM2807 and STM2808)) or (STM1165 and (STM2807 and STM2808)) or (STM0872 and (STM2807 and STM2808)) or (STM3702 and (STM2807 and STM2808))",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNDR3b"
]
},
"annotation":{
"bigg.reaction":[
"RNDR3b"
],
"metanetx.reaction":[
"MNXR104065"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09233"
]
}
},
{
"id":"PYRt2rpp",
"name":"Pyruvate reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"pyr_c":1.0,
"pyr_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PYRt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"PYRt2rpp"
],
"metanetx.reaction":[
"MNXR103385"
],
"reactome.reaction":[
"R-RNO-372347",
"R-HSA-372342",
"R-GGA-372359"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05469",
"rxn09832",
"rxn09717",
"rxn09217"
]
}
},
{
"id":"SERt2rpp",
"name":"L-serine reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ser__L_c":1.0,
"ser__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2970 or STM3243",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SERt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"SERt2rpp"
],
"biocyc":[
"META:TRANS-RXN-71"
],
"metanetx.reaction":[
"MNXR104352"
],
"rhea":[
"28888",
"28887",
"28889",
"28890"
],
"sabiork":[
"13941#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09714",
"rxn09246",
"rxn05307"
]
}
},
{
"id":"PYRtex",
"name":"Pyruvate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"pyr_e":-1.0,
"pyr_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PYRtex"
]
},
"annotation":{
"bigg.reaction":[
"PYRtex"
],
"biocyc":[
"META:TRANS-RXN0-506",
"META:TRANS-RXN0-570"
],
"metanetx.reaction":[
"MNXR103384"
],
"sabiork":[
"12168"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10929",
"rxn09218"
]
}
},
{
"id":"RNDR4",
"name":"Ribonucleoside-diphosphate reductase (UDP)",
"metabolites":{
"dudp_c":1.0,
"h2o_c":1.0,
"trdox_c":1.0,
"trdrd_c":-1.0,
"udp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2277 and STM2278) or (STM2807 and STM2808)",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNDR4"
]
},
"annotation":{
"bigg.reaction":[
"RNDR4"
],
"biocyc":[
"META:UDPREDUCT-RXN"
],
"ec-code":[
"1.17.4.1"
],
"kegg.reaction":[
"R02018"
],
"metanetx.reaction":[
"MNXR104066"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06075"
]
}
},
{
"id":"RNDR4b",
"name":"Ribonucleoside-diphosphate reductase (UDP) (glutaredoxin)",
"metabolites":{
"dudp_c":1.0,
"grxox_c":1.0,
"grxrd_c":-1.0,
"h2o_c":1.0,
"udp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1165 and (STM2807 and STM2808)) or (STM3702 and (STM2807 and STM2808)) or (STM1433 and (STM2807 and STM2808)) or (STM0872 and (STM2807 and STM2808))",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNDR4b"
]
},
"annotation":{
"bigg.reaction":[
"RNDR4b"
],
"metanetx.reaction":[
"MNXR104067"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09234"
]
}
},
{
"id":"QMO2",
"name":"Quinol monooxygenase (Ubiquinol-8)",
"metabolites":{
"h_c":2.0,
"o2_c":-2.0,
"o2s_c":2.0,
"q8_c":1.0,
"q8h2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3180",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"QMO2"
]
},
"annotation":{
"bigg.reaction":[
"QMO2"
],
"metanetx.reaction":[
"MNXR103392"
],
"rhea":[
"29176",
"29178",
"29177",
"29175"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RNTR1c",
"name":"Ribonucleoside-triphosphate reductase (ATP) (flavodoxin)",
"metabolites":{
"atp_c":-1.0,
"datp_c":1.0,
"fldox_c":1.0,
"fldrd_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM3045 and STM4084 and STM4452 and STM4451) or (STM3045 and STM4452) or (STM0694 and STM4452) or (STM0694 and STM4084 and STM4452 and STM4451)",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNTR1c"
]
},
"annotation":{
"bigg.reaction":[
"RNTR1c"
],
"metanetx.reaction":[
"MNXR104071"
],
"sbo":"SBO:0000176"
}
},
{
"id":"QMO3",
"name":"Quinol monooxygenase (menaquinol 8)",
"metabolites":{
"h_c":2.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"o2_c":-2.0,
"o2s_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3180",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"QMO3"
]
},
"annotation":{
"bigg.reaction":[
"QMO3"
],
"metanetx.reaction":[
"MNXR103393"
],
"rhea":[
"29186",
"29184",
"29185",
"29183"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SERt4pp",
"name":"L-serine via sodium symport (periplasm)",
"metabolites":{
"na1_c":1.0,
"na1_p":-1.0,
"ser__L_c":1.0,
"ser__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3225",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SERt4pp"
]
},
"annotation":{
"bigg.reaction":[
"SERt4pp"
],
"biocyc":[
"META:RXN0-4083"
],
"metanetx.reaction":[
"MNXR104346"
],
"rhea":[
"29576",
"29577",
"29578",
"29575"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10185",
"rxn09247"
]
}
},
{
"id":"QULNS",
"name":"Quinolinate synthase",
"metabolites":{
"dhap_c":-1.0,
"h2o_c":2.0,
"iasp_c":-1.0,
"pi_c":1.0,
"quln_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0756",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"QULNS"
]
},
"annotation":{
"bigg.reaction":[
"QULNS"
],
"biocyc":[
"META:QUINOLINATE-SYNTHA-RXN"
],
"ec-code":[
"2.5.1.72"
],
"kegg.reaction":[
"R04292"
],
"metanetx.reaction":[
"MNXR103400"
],
"rhea":[
"25889",
"25891",
"25890",
"25888"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02988"
]
}
},
{
"id":"RNTR2c",
"name":"Ribonucleoside-triphosphate reductase (GTP) (flavodoxin)",
"metabolites":{
"dgtp_c":1.0,
"fldox_c":1.0,
"fldrd_c":-1.0,
"gtp_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0694 and STM4452) or (STM3045 and STM4452) or (STM3045 and STM4084 and STM4452 and STM4451) or (STM0694 and STM4084 and STM4452 and STM4451)",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNTR2c"
]
},
"annotation":{
"bigg.reaction":[
"RNTR2c"
],
"metanetx.reaction":[
"MNXR104074"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RNTR3c",
"name":"Ribonucleoside-triphosphate reductase (CTP) (flavodoxin)",
"metabolites":{
"ctp_c":-1.0,
"dctp_c":1.0,
"fldox_c":1.0,
"fldrd_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM3045 and STM4452) or (STM0694 and STM4084 and STM4452 and STM4451) or (STM0694 and STM4452) or (STM3045 and STM4084 and STM4452 and STM4451)",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNTR3c"
]
},
"annotation":{
"bigg.reaction":[
"RNTR3c"
],
"metanetx.reaction":[
"MNXR104077"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RNTR4c",
"name":"Ribonucleoside-triphosphate reductase (UTP) (flavodoxin)",
"metabolites":{
"dutp_c":1.0,
"fldox_c":1.0,
"fldrd_c":-1.0,
"h2o_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0694 and STM4084 and STM4452 and STM4451) or (STM3045 and STM4452) or (STM0694 and STM4452) or (STM3045 and STM4084 and STM4452 and STM4451)",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"RNTR4c"
]
},
"annotation":{
"bigg.reaction":[
"RNTR4c"
],
"metanetx.reaction":[
"MNXR104080"
],
"sbo":"SBO:0000176"
}
},
{
"id":"RPE",
"name":"Ribulose 5-phosphate 3-epimerase",
"metabolites":{
"ru5p__D_c":-1.0,
"xu5p__D_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3483 or STM4080 or STM1617",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"RPE"
]
},
"annotation":{
"bigg.reaction":[
"RPE"
],
"biocyc":[
"META:RIBULP3EPIM-RXN"
],
"ec-code":[
"5.1.3.1"
],
"kegg.reaction":[
"R01529"
],
"metanetx.reaction":[
"MNXR104083"
],
"reactome.reaction":[
"R-SPO-71303",
"R-CFA-199803",
"R-ATH-71303",
"R-SCE-71303",
"R-CFA-71303",
"R-DME-199803",
"R-XTR-199803",
"R-SSC-199803",
"R-GGA-199803",
"R-TGU-71303",
"R-OSA-199803",
"R-SSC-71303",
"R-MMU-71303",
"R-OSA-71303",
"R-HSA-71303",
"R-MMU-199803",
"R-XTR-71303",
"R-SPO-199803",
"R-SCE-199803",
"R-DDI-71303",
"R-RNO-71303",
"R-DME-71303",
"R-HSA-199803",
"R-DRE-71303",
"R-PFA-199803",
"R-CEL-199803",
"R-RNO-199803",
"R-PFA-71303",
"R-CEL-71303",
"R-TGU-199803",
"R-GGA-71303",
"R-DDI-199803",
"R-BTA-71303",
"R-ATH-199803",
"R-DRE-199803",
"R-BTA-199803"
],
"rhea":[
"13677",
"13680",
"13678",
"13679"
],
"sabiork":[
"62"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01116"
]
}
},
{
"id":"RPI",
"name":"Ribose-5-phosphate isomerase",
"metabolites":{
"r5p_c":-1.0,
"ru5p__D_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3063 or STM1933",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"RPI"
]
},
"annotation":{
"bigg.reaction":[
"RPI"
],
"ec-code":[
"5.3.1.6"
],
"metanetx.reaction":[
"MNXR104084"
],
"sbo":"SBO:0000176"
}
},
{
"id":"S7PI",
"name":"Sedoheptulose 7-phosphate isomerase",
"metabolites":{
"gmhep7p_c":1.0,
"s7p_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0310",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"S7PI"
]
},
"annotation":{
"bigg.reaction":[
"S7PI"
],
"biocyc":[
"META:RXN0-4301"
],
"ec-code":[
"5.3.1.28"
],
"kegg.reaction":[
"R05645",
"R09768"
],
"metanetx.reaction":[
"MNXR139387"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn13947",
"rxn03917",
"rxn13937"
]
}
},
{
"id":"TDSR2",
"name":"Thiol:disulfide reductase (DsbG)",
"metabolites":{
"dsbdox_c":1.0,
"dsbdrd_c":-1.0,
"dsbgox_p":-1.0,
"dsbgrd_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4323 and STM0607",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"TDSR2"
]
},
"annotation":{
"bigg.reaction":[
"TDSR2"
],
"metanetx.reaction":[
"MNXR104765"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09293"
]
}
},
{
"id":"THD2pp",
"name":"NAD(P) transhydrogenase (periplasm)",
"metabolites":{
"h_c":2.0,
"h_p":-2.0,
"nad_c":1.0,
"nadh_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1480 and STM1479",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"THD2pp"
]
},
"annotation":{
"bigg.reaction":[
"THD2pp"
],
"ec-code":[
"1.6.1.1"
],
"metanetx.reaction":[
"MNXR104805"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10125",
"rxn09295"
]
}
},
{
"id":"SADH",
"name":"Succinylarginine dihydrolase",
"metabolites":{
"co2_c":1.0,
"h2o_c":-2.0,
"h_c":-2.0,
"nh4_c":2.0,
"sucarg_c":-1.0,
"sucorn_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1306",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SADH"
]
},
"annotation":{
"bigg.reaction":[
"SADH"
],
"biocyc":[
"META:SUCCARGDIHYDRO-RXN"
],
"ec-code":[
"3.5.3.23"
],
"kegg.reaction":[
"R04189"
],
"metanetx.reaction":[
"MNXR104239"
],
"rhea":[
"19534",
"19535",
"19533",
"19536"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02927"
]
}
},
{
"id":"SERtex",
"name":"L-serine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ser__L_e":-1.0,
"ser__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SERtex"
]
},
"annotation":{
"bigg.reaction":[
"SERtex"
],
"metanetx.reaction":[
"MNXR104354"
],
"reactome.reaction":[
"R-DRE-8932980",
"R-CFA-8932980",
"R-SSC-8932980",
"R-MMU-8932980",
"R-RNO-8932980",
"R-BTA-8932980",
"R-DME-8932980",
"R-SPO-8932980",
"R-TGU-8932980",
"R-GGA-8932980",
"R-OSA-8932980",
"R-XTR-8932980",
"R-DDI-8932980",
"R-SCE-8932980",
"R-HSA-8932980",
"R-CEL-8932980",
"R-ATH-8932980"
],
"rhea":[
"35033",
"35034",
"35032",
"35031"
],
"sabiork":[
"13463",
"13973"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09248",
"rxn10999",
"rxn13110"
]
}
},
{
"id":"SADT2",
"name":"Sulfate adenyltransferase",
"metabolites":{
"aps_c":1.0,
"atp_c":-1.0,
"gdp_c":1.0,
"gtp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0,
"ppi_c":1.0,
"so4_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2934 and STM2935",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"SADT2"
]
},
"annotation":{
"bigg.reaction":[
"SADT2"
],
"ec-code":[
"2.7.7.4"
],
"metanetx.reaction":[
"MNXR104241"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11356",
"rxn09240"
]
}
},
{
"id":"SBTPD",
"name":"Sorbitol-6-phosphate dehydrogenase",
"metabolites":{
"f6p_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"sbt6p_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2835",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"SBTPD"
]
},
"annotation":{
"bigg.reaction":[
"SBTPD"
],
"ec-code":[
"1.1.1.140"
],
"kegg.reaction":[
"R05607"
],
"metanetx.reaction":[
"MNXR104285"
],
"rhea":[
"19840",
"19839",
"19838",
"19837"
],
"sbo":"SBO:0000176"
}
},
{
"id":"THDPS",
"name":"Tetrahydrodipicolinate succinylase",
"metabolites":{
"coa_c":1.0,
"h2o_c":-1.0,
"sl2a6o_c":1.0,
"succoa_c":-1.0,
"thdp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0213",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"THDPS"
]
},
"annotation":{
"bigg.reaction":[
"THDPS"
],
"biocyc":[
"META:TETHYDPICSUCC-RXN"
],
"ec-code":[
"2.3.1.117"
],
"kegg.reaction":[
"R04365"
],
"metanetx.reaction":[
"MNXR104806"
],
"rhea":[
"17325",
"17327",
"17326",
"17328"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03031"
]
}
},
{
"id":"THIORDXi",
"name":"Hydrogen peroxide reductase (thioredoxin)",
"metabolites":{
"h2o2_c":-1.0,
"h2o_c":2.0,
"trdox_c":1.0,
"trdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"((STM0609 and STM0608) or (STM0609 and STM0402)) and (STM2649 or STM3915)",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"THIORDXi"
]
},
"annotation":{
"bigg.reaction":[
"THIORDXi"
],
"biocyc":[
"META:RXN0-267"
],
"ec-code":[
"1.11.1.15",
"1.11.1.16"
],
"metanetx.reaction":[
"MNXR104815"
],
"sabiork":[
"11213"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09296"
]
}
},
{
"id":"SBTptspp",
"name":"D-sorbitol transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"pep_c":-1.0,
"pyr_c":1.0,
"sbt6p_c":1.0,
"sbt__D_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2431 and STM2432 and STM2832 and STM2834 and STM2833",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SBTptspp"
]
},
"annotation":{
"bigg.reaction":[
"SBTptspp"
],
"metanetx.reaction":[
"MNXR104290"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09242",
"rxn10184"
]
}
},
{
"id":"THMDt2pp_copy1",
"name":"Thymidine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"thymd_c":1.0,
"thymd_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113 or STM2409",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"THMDt2pp",
"THMDt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"THMDt2pp"
],
"biocyc":[
"META:TRANS-RXN-108H"
],
"metanetx.reaction":[
"MNXR104818"
],
"rhea":[
"29957",
"29958",
"29955",
"29956"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09298",
"rxn05200"
]
}
},
{
"id":"SFGTHi",
"name":"S-Formylglutathione hydralase",
"metabolites":{
"Sfglutth_c":-1.0,
"for_c":1.0,
"gthrd_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2194",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"SFGTHi"
]
},
"annotation":{
"bigg.reaction":[
"SFGTHi"
],
"biocyc":[
"META:S-FORMYLGLUTATHIONE-HYDROLASE-RXN"
],
"ec-code":[
"3.1.2.12"
],
"kegg.reaction":[
"R00527"
],
"metanetx.reaction":[
"MNXR104357"
],
"reactome.reaction":[
"R-CFA-5693724",
"R-DRE-5693724",
"R-GGA-5693724",
"R-DDI-5693724",
"R-TGU-5693724",
"R-RNO-5693724",
"R-HSA-5693724",
"R-SSC-5693724",
"R-XTR-5693724",
"R-SCE-5693724",
"R-MMU-5693724",
"R-CEL-5693724",
"R-ATH-5693724",
"R-DME-5693724",
"R-OSA-5693724",
"R-BTA-5693724"
],
"rhea":[
"14963",
"14964",
"14962",
"14961"
],
"sabiork":[
"945"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00377"
]
}
},
{
"id":"THMDt2pp_copy2",
"name":"Thymidine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"thymd_c":1.0,
"thymd_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2421",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"THMDt2pp",
"THMDt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"THMDt2pp"
],
"biocyc":[
"META:TRANS-RXN-108H"
],
"metanetx.reaction":[
"MNXR104818"
],
"rhea":[
"29957",
"29958",
"29955",
"29956"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09298",
"rxn05200"
]
}
},
{
"id":"THMDtex",
"name":"Thymidine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"thymd_e":-1.0,
"thymd_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"THMDtex"
]
},
"annotation":{
"bigg.reaction":[
"THMDtex"
],
"metanetx.reaction":[
"MNXR104821"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10916",
"rxn09299"
]
}
},
{
"id":"THMabcpp",
"name":"Thiamine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"thm_c":1.0,
"thm_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0108 and STM0107 and STM0106",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"THMabcpp"
]
},
"annotation":{
"bigg.reaction":[
"THMabcpp"
],
"metanetx.reaction":[
"MNXR138862"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05177",
"rxn09297"
]
}
},
{
"id":"SBTtex",
"name":"D-sorbitol transport via diffusion (extracellular to periplasm)",
"metabolites":{
"sbt__D_e":-1.0,
"sbt__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SBTtex"
]
},
"annotation":{
"bigg.reaction":[
"SBTtex"
],
"metanetx.reaction":[
"MNXR104288"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09243",
"rxn09662"
]
}
},
{
"id":"SDPDS",
"name":"Succinyl-diaminopimelate desuccinylase",
"metabolites":{
"26dap_LL_c":1.0,
"h2o_c":-1.0,
"sl26da_c":-1.0,
"succ_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2483",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"SDPDS"
]
},
"annotation":{
"bigg.reaction":[
"SDPDS"
],
"biocyc":[
"META:SUCCDIAMINOPIMDESUCC-RXN"
],
"ec-code":[
"3.5.1.18"
],
"kegg.reaction":[
"R02734"
],
"metanetx.reaction":[
"MNXR104300"
],
"rhea":[
"22611",
"22608",
"22610",
"22609"
],
"sabiork":[
"2621"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01973"
]
}
},
{
"id":"SDPTA",
"name":"Succinyldiaminopimelate transaminase",
"metabolites":{
"akg_c":-1.0,
"glu__L_c":1.0,
"sl26da_c":-1.0,
"sl2a6o_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3468",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"SDPTA"
]
},
"annotation":{
"bigg.reaction":[
"SDPTA"
],
"biocyc":[
"META:SUCCINYLDIAMINOPIMTRANS-RXN"
],
"ec-code":[
"2.6.1.17"
],
"kegg.reaction":[
"R04475"
],
"metanetx.reaction":[
"MNXR104301"
],
"rhea":[
"11960",
"11961",
"11963",
"11962"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03087"
]
}
},
{
"id":"SELCYSS",
"name":"Selenocysteine synthase",
"metabolites":{
"h_c":1.0,
"pi_c":1.0,
"sectrna_c":1.0,
"selnp_c":-1.0,
"sertrna_sec_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3683",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"SELCYSS"
]
},
"annotation":{
"bigg.reaction":[
"SELCYSS"
],
"ec-code":[
"2.9.1.1"
],
"kegg.reaction":[
"R08219"
],
"metanetx.reaction":[
"MNXR104314"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09244"
]
}
},
{
"id":"SGDS",
"name":"Succinylglutamate desuccinylase",
"metabolites":{
"glu__L_c":1.0,
"h2o_c":-1.0,
"succ_c":1.0,
"sucglu_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1307",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SGDS"
]
},
"annotation":{
"bigg.reaction":[
"SGDS"
],
"biocyc":[
"META:SUCCGLUDESUCC-RXN"
],
"ec-code":[
"3.5.1.96"
],
"kegg.reaction":[
"R00411"
],
"metanetx.reaction":[
"MNXR104362"
],
"rhea":[
"15170",
"15172",
"15171",
"15169"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00291"
]
}
},
{
"id":"SELNPS",
"name":"Selenophosphate synthase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0,
"seln_c":-1.0,
"selnp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1297",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"SELNPS"
]
},
"annotation":{
"bigg.reaction":[
"SELNPS"
],
"biocyc":[
"META:2.7.9.3-RXN"
],
"ec-code":[
"2.7.9.3"
],
"kegg.reaction":[
"R03595"
],
"metanetx.reaction":[
"MNXR104322"
],
"rhea":[
"18740",
"18739",
"18737",
"18738"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02569"
]
}
},
{
"id":"THMtex",
"name":"Thiamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"thm_e":-1.0,
"thm_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"THMtex"
]
},
"annotation":{
"bigg.reaction":[
"THMtex"
],
"metanetx.reaction":[
"MNXR131128"
],
"sabiork":[
"12167"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn11006",
"rxn09300"
]
}
},
{
"id":"THRA2",
"name":"L-allo-Threonine Aldolase",
"metabolites":{
"acald_c":1.0,
"athr__L_c":-1.0,
"gly_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2555 or STM0934",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"THRA2i"
]
},
"annotation":{
"bigg.reaction":[
"THRA2"
],
"sbo":"SBO:0000176"
}
},
{
"id":"THRA",
"name":"Threonine aldolase",
"metabolites":{
"acald_c":1.0,
"gly_c":1.0,
"thr__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2555 or STM0934",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"THRAi"
]
},
"annotation":{
"bigg.reaction":[
"THRA"
],
"biocyc":[
"META:THREONINE-ALDOLASE-RXN"
],
"ec-code":[
"4.1.2.5",
"4.1.2.48"
],
"kegg.reaction":[
"R00751"
],
"metanetx.reaction":[
"MNXR104833"
],
"rhea":[
"19625",
"19626",
"19627",
"19628"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00541"
]
}
},
{
"id":"THRD",
"name":"L-threonine dehydrogenase",
"metabolites":{
"2aobut_c":1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"thr__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3708",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"THRD"
]
},
"annotation":{
"bigg.reaction":[
"THRD"
],
"biocyc":[
"META:THREODEHYD-RXN"
],
"ec-code":[
"1.1.1.103"
],
"kegg.reaction":[
"R01465"
],
"metanetx.reaction":[
"MNXR103402"
],
"reactome.reaction":[
"R-HSA-6798667"
],
"rhea":[
"13161",
"13164",
"13163",
"13162"
],
"sabiork":[
"1641"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01068"
]
}
},
{
"id":"THRD_L",
"name":"L-threonine deaminase",
"metabolites":{
"2obut_c":1.0,
"nh4_c":1.0,
"thr__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3244 or STM1826 or STM2971 or STM3905",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"THRD_L"
]
},
"annotation":{
"bigg.reaction":[
"THRD_L"
],
"biocyc":[
"META:THREDEHYD-RXN"
],
"ec-code":[
"4.3.1.19"
],
"kegg.reaction":[
"R00996"
],
"metanetx.reaction":[
"MNXR104714"
],
"rhea":[
"22108",
"22111",
"22109",
"22110"
],
"sabiork":[
"1290"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00737"
]
}
},
{
"id":"TTDCAtexi",
"name":"Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ttdca_e":-1.0,
"ttdca_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2391",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"TTDCAtexi"
]
},
"annotation":{
"bigg.reaction":[
"TTDCAtexi"
],
"metanetx.reaction":[
"MNXR99092"
],
"sbo":"SBO:0000185"
}
},
{
"id":"THRPtex",
"name":"Phospho-L-threonine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"thrp_e":-1.0,
"thrp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"THRPtex"
]
},
"annotation":{
"bigg.reaction":[
"THRPtex"
],
"metanetx.reaction":[
"MNXR104845"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09303"
]
}
},
{
"id":"SGSAD",
"name":"Succinylglutamic semialdehyde dehydrogenase",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0,
"sucglu_c":1.0,
"sucgsa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1305",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SGSAD"
]
},
"annotation":{
"bigg.reaction":[
"SGSAD"
],
"biocyc":[
"META:SUCCGLUALDDEHYD-RXN"
],
"ec-code":[
"1.2.1.71"
],
"kegg.reaction":[
"R05049"
],
"metanetx.reaction":[
"MNXR104368"
],
"rhea":[
"10813",
"10812",
"10815",
"10814"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03422"
]
}
},
{
"id":"THRS",
"name":"Threonine synthase",
"metabolites":{
"h2o_c":-1.0,
"phom_c":-1.0,
"pi_c":1.0,
"thr__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0004",
"subsystem":"Threonine and Lysine Metabolism",
"notes":{
"original_bigg_ids":[
"THRS"
]
},
"annotation":{
"bigg.reaction":[
"THRS"
],
"biocyc":[
"META:THRESYN-RXN"
],
"ec-code":[
"4.2.3.1"
],
"kegg.reaction":[
"R01466"
],
"metanetx.reaction":[
"MNXR104846"
],
"rhea":[
"10842",
"10841",
"10840",
"10843"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01069"
]
}
},
{
"id":"THRTRS",
"name":"Threonyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"thr__L_c":-1.0,
"thrtrna_c":1.0,
"trnathr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1333",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"THRTRS"
]
},
"annotation":{
"bigg.reaction":[
"THRTRS"
],
"ec-code":[
"6.1.1.3"
],
"kegg.reaction":[
"R03663"
],
"metanetx.reaction":[
"MNXR104848"
],
"reactome.reaction":[
"R-HSA-380002",
"R-HSA-380201"
],
"sabiork":[
"391"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06447"
]
}
},
{
"id":"TTDCEAtexi",
"name":"Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm)",
"metabolites":{
"ttdcea_e":-1.0,
"ttdcea_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2391",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"TTDCEAtexi"
]
},
"annotation":{
"bigg.reaction":[
"TTDCEAtexi"
],
"metanetx.reaction":[
"MNXR99096"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TUNGSabcpp",
"name":"Tungstate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"tungs_c":1.0,
"tungs_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0781 and STM0782 and STM0783",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"TUNGSabcpp"
]
},
"annotation":{
"bigg.reaction":[
"TUNGSabcpp"
],
"biocyc":[
"META:TRANS-RXN-242B"
],
"ec-code":[
"3.6.3.55"
],
"metanetx.reaction":[
"MNXR104978"
],
"rhea":[
"35030#2",
"35028#2",
"35027#2",
"35029#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09333",
"rxn13756"
]
}
},
{
"id":"TUNGStex",
"name":"Tungstate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tungs_e":-1.0,
"tungs_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2267 or STM1473 or STM0320 or STM0999",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TUNGStex"
]
},
"annotation":{
"bigg.reaction":[
"TUNGStex"
],
"metanetx.reaction":[
"MNXR104979"
],
"rhea":[
"32842",
"32841",
"32840",
"32839"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09334"
]
}
},
{
"id":"THRabcpp",
"name":"L-threonine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"thr__L_c":1.0,
"thr__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3560 and STM3561 and STM3563 and STM3567 and STM3562",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"THRabcpp"
]
},
"annotation":{
"bigg.reaction":[
"THRabcpp"
],
"metanetx.reaction":[
"MNXR104849"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09301",
"rxn05169"
]
}
},
{
"id":"SHCHCS2",
"name":"2-succinyl-6-hydroxy-2,4-cyclohexadiene 1-carboxylate synthase",
"metabolites":{
"2shchc_c":1.0,
"ichor_c":-1.0,
"pyr_c":1.0,
"ssaltpp_c":-1.0,
"thmpp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2309",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"SHCHCS2"
]
},
"annotation":{
"bigg.reaction":[
"SHCHCS2"
],
"metanetx.reaction":[
"MNXR134497"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03398"
]
}
},
{
"id":"THRt2pp",
"name":"L-threonine efflux transport via proton antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"thr__L_c":-1.0,
"thr__L_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0832 or STM3959",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"THRt2pp"
]
},
"annotation":{
"bigg.reaction":[
"THRt2pp"
],
"biocyc":[
"META:TRANS-RXN0-0244"
],
"metanetx.reaction":[
"MNXR104851"
],
"rhea":[
"28997",
"28998",
"28996",
"28995"
],
"sabiork":[
"13940#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13747",
"rxn09304"
]
}
},
{
"id":"TYMtex",
"name":"Tyramine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tym_e":-1.0,
"tym_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TYMtex"
]
},
"annotation":{
"bigg.reaction":[
"TYMtex"
],
"metanetx.reaction":[
"MNXR104985"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09335"
]
}
},
{
"id":"TYRPpp",
"name":"Phospho-L-tyrosine phosphatase (periplasmic)",
"metabolites":{
"h2o_p":-1.0,
"pi_p":1.0,
"tyr__L_p":1.0,
"tyrp_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4249",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"TYRPpp"
]
},
"annotation":{
"bigg.reaction":[
"TYRPpp"
],
"biocyc":[
"META:RXN-14534"
],
"metanetx.reaction":[
"MNXR104998"
],
"rhea":[
"30866",
"30863",
"30865",
"30864"
],
"sabiork":[
"9571"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09336"
]
}
},
{
"id":"SHCHD2",
"name":"Sirohydrochlorin dehydrogenase (NAD)",
"metabolites":{
"dscl_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"scl_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3477",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"SHCHD2"
]
},
"annotation":{
"bigg.reaction":[
"SHCHD2"
],
"biocyc":[
"META:DIMETHUROPORDEHYDROG-RXN"
],
"ec-code":[
"1.3.1.76"
],
"kegg.reaction":[
"R03947"
],
"metanetx.reaction":[
"MNXR104373"
],
"rhea":[
"15613",
"15614",
"15615",
"15616"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02774"
]
}
},
{
"id":"TYRPtex",
"name":"Phopho-L-tyrosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tyrp_e":-1.0,
"tyrp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TYRPtex"
]
},
"annotation":{
"bigg.reaction":[
"TYRPtex"
],
"metanetx.reaction":[
"MNXR104999"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09337"
]
}
},
{
"id":"TYRTA",
"name":"Tyrosine transaminase",
"metabolites":{
"34hpp_c":1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"tyr__L_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4248 or STM0998",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"TYRTA"
]
},
"annotation":{
"bigg.reaction":[
"TYRTA"
],
"biocyc":[
"META:TYROSINE-AMINOTRANSFERASE-RXN"
],
"ec-code":[
"2.6.1.57",
"2.6.1.5",
"2.6.1.9",
"2.6.1.1"
],
"kegg.reaction":[
"R00734"
],
"metanetx.reaction":[
"MNXR105000"
],
"reactome.reaction":[
"R-BTA-517444",
"R-ATH-517444",
"R-DRE-71155",
"R-MMU-517444",
"R-TGU-517444",
"R-CEL-517444",
"R-DRE-517444",
"R-BTA-71155",
"R-HSA-517444",
"R-CFA-71155",
"R-OSA-71155",
"R-XTR-71155",
"R-SSC-71155",
"R-SCE-71155",
"R-SCE-517444",
"R-XTR-517444",
"R-HSA-71155",
"R-DME-517444",
"R-RNO-517444",
"R-ATH-71155",
"R-GGA-517444",
"R-MMU-71155",
"R-DDI-517444",
"R-CFA-517444",
"R-OSA-517444",
"R-SSC-517444",
"R-DME-71155",
"R-GGA-71155",
"R-TGU-71155",
"R-CEL-71155",
"R-DDI-71155",
"R-RNO-71155"
],
"rhea":[
"15094",
"15096",
"15093",
"15095"
],
"sabiork":[
"1097"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00527"
]
}
},
{
"id":"THRt2rpp",
"name":"L-threonine reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"thr__L_c":1.0,
"thr__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3243",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"THRt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"THRt2rpp"
],
"biocyc":[
"META:TRANS-RXN-72"
],
"metanetx.reaction":[
"MNXR104850"
],
"rhea":[
"28886",
"28885",
"28883",
"28884"
],
"sabiork":[
"13940#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05300",
"rxn09710",
"rxn09305"
]
}
},
{
"id":"THRt4pp",
"name":"L-threonine  via sodium symport (periplasm)",
"metabolites":{
"na1_c":1.0,
"na1_p":-1.0,
"thr__L_c":1.0,
"thr__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3225",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"THRt4pp"
]
},
"annotation":{
"bigg.reaction":[
"THRt4pp"
],
"metanetx.reaction":[
"MNXR104842"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10186",
"rxn09306"
]
}
},
{
"id":"THRtex",
"name":"L-threonine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"thr__L_e":-1.0,
"thr__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"THRtex"
]
},
"annotation":{
"bigg.reaction":[
"THRtex"
],
"metanetx.reaction":[
"MNXR104852"
],
"rhea":[
"35022",
"35020",
"35019",
"35021"
],
"sabiork":[
"13464"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09307",
"rxn13117",
"rxn10898"
]
}
},
{
"id":"TYRTRS",
"name":"Tyrosyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnatyr_c":-1.0,
"tyr__L_c":-1.0,
"tyrtrna_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1449",
"subsystem":"tRNA charging",
"notes":{
"original_bigg_ids":[
"TYRTRS"
]
},
"annotation":{
"bigg.reaction":[
"TYRTRS"
],
"ec-code":[
"6.1.1.1"
],
"kegg.reaction":[
"R02918"
],
"metanetx.reaction":[
"MNXR105001"
],
"reactome.reaction":[
"R-HSA-379980",
"R-HSA-380170"
],
"sabiork":[
"354"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06280"
]
}
},
{
"id":"SHCHF",
"name":"Sirohydrochlorin ferrochelatase",
"metabolites":{
"fe2_c":-1.0,
"h_c":3.0,
"scl_c":-1.0,
"sheme_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3477",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"SHCHF"
]
},
"annotation":{
"bigg.reaction":[
"SHCHF"
],
"biocyc":[
"META:SIROHEME-FERROCHELAT-RXN"
],
"ec-code":[
"4.99.1.4"
],
"kegg.reaction":[
"R02864"
],
"metanetx.reaction":[
"MNXR104375"
],
"rhea":[
"24360",
"24361",
"24362",
"24363"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02056"
]
}
},
{
"id":"TYRt2rpp",
"name":"L-tyrosine reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"tyr__L_c":1.0,
"tyr__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1937 or STM0150 or STM0568",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"TYRt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"TYRt2rpp"
],
"biocyc":[
"META:TRANS-RXN-77"
],
"metanetx.reaction":[
"MNXR105003"
],
"rhea":[
"28876",
"28875",
"28877",
"28878"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09831",
"rxn09338",
"rxn13412",
"rxn05301",
"rxn09708"
]
}
},
{
"id":"TYRtex",
"name":"L-tyrosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tyr__L_e":-1.0,
"tyr__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TYRtex"
]
},
"annotation":{
"bigg.reaction":[
"TYRtex"
],
"biocyc":[
"META:RXN66-446"
],
"metanetx.reaction":[
"MNXR105002"
],
"sabiork":[
"13471"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09339",
"rxn10974"
]
}
},
{
"id":"THYMt3pp",
"name":"Thymine transport out via proton antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"thym_c":-1.0,
"thym_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"THYMt3pp"
]
},
"annotation":{
"bigg.reaction":[
"THYMt3pp"
],
"metanetx.reaction":[
"MNXR104854"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09308",
"rxn09656"
]
}
},
{
"id":"THYMtex",
"name":"Thymine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"thym_e":-1.0,
"thym_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1473 or STM2267 or STM0320 or STM0999",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"THYMtex"
]
},
"annotation":{
"bigg.reaction":[
"THYMtex"
],
"biocyc":[
"META:TRANS-RXN0-524"
],
"metanetx.reaction":[
"MNXR104853"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09309"
]
}
},
{
"id":"TKT1",
"name":"Transketolase",
"metabolites":{
"g3p_c":1.0,
"r5p_c":-1.0,
"s7p_c":1.0,
"xu5p__D_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3076 or STM2474 or STM2341 or STM2340",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"TKT1"
]
},
"annotation":{
"bigg.reaction":[
"TKT1"
],
"ec-code":[
"2.2.1.1"
],
"metanetx.reaction":[
"MNXR104868"
],
"sbo":"SBO:0000176"
}
},
{
"id":"U23GAAT",
"name":"UDP-3-O-(3-hydroxymyristoyl)glucosamine acyltransferase",
"metabolites":{
"3hmrsACP_c":-1.0,
"ACP_c":1.0,
"h_c":1.0,
"u23ga_c":1.0,
"u3hga_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0226",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"U23GAAT"
]
},
"annotation":{
"bigg.reaction":[
"U23GAAT"
],
"biocyc":[
"META:UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-RXN"
],
"ec-code":[
"2.3.1.191"
],
"kegg.reaction":[
"R04550"
],
"metanetx.reaction":[
"MNXR105007"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06723"
]
}
},
{
"id":"UAAGDS",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase",
"metabolites":{
"26dap__M_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uamag_c":-1.0,
"ugmd_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0123",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAAGDS"
]
},
"annotation":{
"bigg.reaction":[
"UAAGDS"
],
"ec-code":[
"6.3.2.13"
],
"metanetx.reaction":[
"MNXR105013"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UACGALPpp",
"name":"UDP-N-acetyl-D-galactosamine pyrophosphohydrolase (periplasm)",
"metabolites":{
"acgal1p_p":1.0,
"h2o_p":-1.0,
"h_p":2.0,
"udpacgal_p":-1.0,
"ump_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UACGALPpp"
]
},
"annotation":{
"bigg.reaction":[
"UACGALPpp"
],
"ec-code":[
"3.6.1.45"
],
"metanetx.reaction":[
"MNXR105017"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09340"
]
}
},
{
"id":"UACGAMPpp",
"name":"UDP-N-acetyl-D-glucosamine pyrophosphohydrolase (periplasm)",
"metabolites":{
"acgam1p_p":1.0,
"h2o_p":-1.0,
"h_p":2.0,
"uacgam_p":-1.0,
"ump_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UACGAMPpp"
]
},
"annotation":{
"bigg.reaction":[
"UACGAMPpp"
],
"ec-code":[
"3.6.1.45"
],
"metanetx.reaction":[
"MNXR105020"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09341"
]
}
},
{
"id":"TKT2",
"name":"Transketolase",
"metabolites":{
"e4p_c":-1.0,
"f6p_c":1.0,
"g3p_c":1.0,
"xu5p__D_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3076 or STM2474 or STM2341 or STM2340",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"TKT2"
]
},
"annotation":{
"bigg.reaction":[
"TKT2"
],
"biocyc":[
"META:2TRANSKETO-RXN"
],
"ec-code":[
"2.2.1.1"
],
"kegg.reaction":[
"R01830"
],
"metanetx.reaction":[
"MNXR104869"
],
"rhea":[
"27627",
"27628",
"27626",
"27629"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TMAOR1pp",
"name":"Trimethylamine N-oxide reductase (menaquinol 8) (periplasm)",
"metabolites":{
"h2o_p":1.0,
"h_p":-1.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"tma_p":1.0,
"tmao_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3823 and STM3822",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TMAOR1pp"
]
},
"annotation":{
"bigg.reaction":[
"TMAOR1pp"
],
"metanetx.reaction":[
"MNXR104879"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09314",
"rxn10127"
]
}
},
{
"id":"TMAOR2pp",
"name":"Trimethylamine N-oxide reductase (demethylmenaquinol 8) (periplasm)",
"metabolites":{
"2dmmq8_c":1.0,
"2dmmql8_c":-1.0,
"h2o_p":1.0,
"h_p":-1.0,
"tma_p":1.0,
"tmao_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3823 and STM3822",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TMAOR2pp"
]
},
"annotation":{
"bigg.reaction":[
"TMAOR2pp"
],
"metanetx.reaction":[
"MNXR104881"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09316",
"rxn10128"
]
}
},
{
"id":"UACGAMtex",
"name":"UDP-N-acetyl-D-glucosamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"uacgam_e":-1.0,
"uacgam_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"UACGAMtex"
]
},
"annotation":{
"bigg.reaction":[
"UACGAMtex"
],
"metanetx.reaction":[
"MNXR105021"
],
"reactome.reaction":[
"R-BTA-742354",
"R-SCE-742354",
"R-CEL-742354",
"R-SSC-742354",
"R-HSA-742354",
"R-CFA-742354",
"R-DDI-742354",
"R-MMU-742354",
"R-RNO-742354",
"R-SPO-742354",
"R-DME-742354",
"R-TGU-742354",
"R-GGA-742354",
"R-DRE-742354"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09342"
]
}
},
{
"id":"TMAOtex",
"name":"Trimethylamine N-oxide transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tmao_e":-1.0,
"tmao_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TMAOtex"
]
},
"annotation":{
"bigg.reaction":[
"TMAOtex"
],
"metanetx.reaction":[
"MNXR104882"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09317"
]
}
},
{
"id":"SHK3Dr",
"name":"Shikimate dehydrogenase",
"metabolites":{
"3dhsk_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"skm_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1359 or STM3401 or STM3859",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"SHK3Dr"
]
},
"annotation":{
"bigg.reaction":[
"SHK3Dr"
],
"biocyc":[
"META:SHIKIMATE-5-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.25",
"1.1.1.282"
],
"kegg.reaction":[
"R02413"
],
"metanetx.reaction":[
"MNXR104378"
],
"reactome.reaction":[
"R-MTU-964842"
],
"rhea":[
"17739",
"17738",
"17737",
"17740"
],
"sabiork":[
"2351"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01740"
]
}
},
{
"id":"TMAtex",
"name":"Trimethylamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tma_e":-1.0,
"tma_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TMAtex"
]
},
"annotation":{
"bigg.reaction":[
"TMAtex"
],
"metanetx.reaction":[
"MNXR104884"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09318"
]
}
},
{
"id":"TMDK1",
"name":"Thymidine kinase (ATP:thymidine)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dtmp_c":1.0,
"h_c":1.0,
"thymd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1750",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"TMDK1"
]
},
"annotation":{
"bigg.reaction":[
"TMDK1"
],
"biocyc":[
"META:THYKI-RXN"
],
"ec-code":[
"2.7.1.145",
"2.7.1.21"
],
"kegg.reaction":[
"R01567"
],
"metanetx.reaction":[
"MNXR104885"
],
"reactome.reaction":[
"R-ATH-73632",
"R-CFA-73632",
"R-GGA-73632",
"R-BTA-73632",
"R-CEL-73632",
"R-OSA-73632",
"R-RNO-73632",
"R-XTR-73632",
"R-TGU-73632",
"R-HSA-73632",
"R-DDI-73632",
"R-MMU-73632",
"R-DRE-73632"
],
"rhea":[
"19130",
"19132",
"19131",
"19129"
],
"sabiork":[
"90"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01143"
]
}
},
{
"id":"UACMAMO",
"name":"UDP-N-acetyl-D-mannosamine oxidoreductase",
"metabolites":{
"h2o_c":-1.0,
"h_c":3.0,
"nad_c":-2.0,
"nadh_c":2.0,
"uacmam_c":-1.0,
"uacmamu_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3921",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UACMAMO"
]
},
"annotation":{
"bigg.reaction":[
"UACMAMO"
],
"biocyc":[
"META:UDPMANNACADEHYDROG-RXN"
],
"ec-code":[
"1.1.1.336"
],
"kegg.reaction":[
"R03317"
],
"metanetx.reaction":[
"MNXR141283"
],
"rhea":[
"25782",
"25780",
"25783",
"25781"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02377"
]
}
},
{
"id":"UAG2E",
"name":"UDP-N-acetylglucosamine 2-epimerase",
"metabolites":{
"uacgam_c":-1.0,
"uacmam_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3920",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAG2E"
]
},
"annotation":{
"bigg.reaction":[
"UAG2E"
],
"biocyc":[
"META:UDPGLCNACEPIM-RXN"
],
"ec-code":[
"5.1.3.14"
],
"kegg.reaction":[
"R00420"
],
"metanetx.reaction":[
"MNXR141025"
],
"rhea":[
"17214",
"17215",
"17213",
"17216"
],
"sabiork":[
"875"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00297"
]
}
},
{
"id":"UAGAAT",
"name":"UDP-N-acetylglucosamine acyltransferase",
"metabolites":{
"3hmrsACP_c":-1.0,
"ACP_c":1.0,
"u3aga_c":1.0,
"uacgam_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1196 and STM0228",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"UAGAAT"
]
},
"annotation":{
"bigg.reaction":[
"UAGAAT"
],
"biocyc":[
"META:UDPNACETYLGLUCOSAMACYLTRANS-RXN"
],
"ec-code":[
"2.3.1.129"
],
"kegg.reaction":[
"R04567"
],
"metanetx.reaction":[
"MNXR105028"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06729"
]
}
},
{
"id":"TMDPP",
"name":"Thymidine phosphorylase",
"metabolites":{
"2dr1p_c":1.0,
"pi_c":-1.0,
"thym_c":1.0,
"thymd_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4568",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"TMDPP"
]
},
"annotation":{
"bigg.reaction":[
"TMDPP"
],
"biocyc":[
"META:THYM-PHOSPH-RXN"
],
"ec-code":[
"2.4.2.4",
"2.4.2.2"
],
"kegg.reaction":[
"R01570"
],
"metanetx.reaction":[
"MNXR104887"
],
"rhea":[
"16040",
"16038",
"16037",
"16039"
],
"sabiork":[
"79"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01146"
]
}
},
{
"id":"SHKK",
"name":"Shikimate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"skm5p_c":1.0,
"skm_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3487 or STM0388",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"SHKK"
]
},
"annotation":{
"bigg.reaction":[
"SHKK"
],
"biocyc":[
"META:SHIKIMATE-KINASE-RXN"
],
"ec-code":[
"2.7.1.71"
],
"kegg.reaction":[
"R02412"
],
"metanetx.reaction":[
"MNXR104379"
],
"reactome.reaction":[
"R-MTU-964939"
],
"rhea":[
"13121",
"13122",
"13123",
"13124"
],
"sabiork":[
"2350"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01739"
]
}
},
{
"id":"TMDS",
"name":"Thymidylate synthase",
"metabolites":{
"dhf_c":1.0,
"dtmp_c":1.0,
"dump_c":-1.0,
"mlthf_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3001",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"TMDS"
]
},
"annotation":{
"bigg.reaction":[
"TMDS"
],
"ec-code":[
"2.1.1.45"
],
"kegg.reaction":[
"R02101"
],
"metanetx.reaction":[
"MNXR104889"
],
"rhea":[
"12106",
"12104",
"12107",
"12105"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TMK",
"name":"Thiamine kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"thm_c":-1.0,
"thmmp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1208",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"TMK"
]
},
"annotation":{
"bigg.reaction":[
"TMK"
],
"ec-code":[
"2.7.1.89"
],
"metanetx.reaction":[
"MNXR138875"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01538"
]
}
},
{
"id":"UAGCVT",
"name":"UDP-N-acetylglucosamine 1-carboxyvinyltransferase",
"metabolites":{
"pep_c":-1.0,
"pi_c":1.0,
"uaccg_c":1.0,
"uacgam_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3307",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAGCVT"
]
},
"annotation":{
"bigg.reaction":[
"UAGCVT"
],
"biocyc":[
"META:UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN"
],
"ec-code":[
"2.5.1.7"
],
"kegg.reaction":[
"R00660"
],
"metanetx.reaction":[
"MNXR105032"
],
"rhea":[
"18681",
"18682",
"18683",
"18684"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00461"
]
}
},
{
"id":"UAGDP",
"name":"UDP-N-acetylglucosamine diphosphorylase",
"metabolites":{
"acgam1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0,
"uacgam_c":1.0,
"utp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3862",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAGDP"
]
},
"annotation":{
"bigg.reaction":[
"UAGDP"
],
"ec-code":[
"2.7.7.23"
],
"metanetx.reaction":[
"MNXR105033"
],
"reactome.reaction":[
"R-CFA-446204",
"R-DME-446204",
"R-HSA-446204",
"R-PFA-446204",
"R-XTR-446204",
"R-ATH-446204",
"R-OSA-446204",
"R-TGU-446204",
"R-DDI-446204",
"R-SCE-446204",
"R-GGA-446204",
"R-SSC-446204",
"R-DRE-446204",
"R-MMU-446204",
"R-RNO-446204",
"R-CEL-446204",
"R-SPO-446204",
"R-BTA-446204"
],
"sabiork":[
"870"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00293"
]
}
},
{
"id":"UAGPT3",
"name":"UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase",
"metabolites":{
"h_c":1.0,
"uaagmda_c":1.0,
"uacgam_c":-1.0,
"uagmda_c":-1.0,
"udp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0128",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAGPT3"
]
},
"annotation":{
"bigg.reaction":[
"UAGPT3"
],
"biocyc":[
"META:NACGLCTRANS-RXN"
],
"ec-code":[
"2.4.1.227"
],
"kegg.reaction":[
"R05032",
"R06174"
],
"metanetx.reaction":[
"MNXR139325"
],
"rhea":[
"31228",
"31227",
"31229",
"31230"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03408"
]
}
},
{
"id":"TMPK",
"name":"Thiamine-phosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"thmmp_c":-1.0,
"thmpp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0419",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"TMPK"
]
},
"annotation":{
"bigg.reaction":[
"TMPK"
],
"biocyc":[
"META:THI-P-KIN-RXN"
],
"ec-code":[
"2.7.4.16"
],
"kegg.reaction":[
"R00617"
],
"metanetx.reaction":[
"MNXR104907"
],
"rhea":[
"15913",
"15916",
"15915",
"15914"
],
"sabiork":[
"1007"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00438"
]
}
},
{
"id":"SKMtex",
"name":"Shikimate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"skm_e":-1.0,
"skm_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SKMtex"
]
},
"annotation":{
"bigg.reaction":[
"SKMtex"
],
"metanetx.reaction":[
"MNXR104394"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09257"
]
}
},
{
"id":"TMPPP",
"name":"Thiamine-phosphate diphosphorylase",
"metabolites":{
"2mahmp_c":-1.0,
"4mpetz_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0,
"thmmp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4163",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"TMPPP"
]
},
"annotation":{
"bigg.reaction":[
"TMPPP"
],
"biocyc":[
"META:THI-P-SYN-RXN"
],
"ec-code":[
"2.5.1.3"
],
"kegg.reaction":[
"R03223"
],
"metanetx.reaction":[
"MNXR104908"
],
"rhea":[
"22328",
"22329",
"22331",
"22330"
],
"sabiork":[
"3049"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02305"
]
}
},
{
"id":"UAMAGS",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"glu__D_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uama_c":-1.0,
"uamag_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0126",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAMAGS"
]
},
"annotation":{
"bigg.reaction":[
"UAMAGS"
],
"biocyc":[
"META:UDP-NACMURALA-GLU-LIG-RXN"
],
"ec-code":[
"6.3.2.9"
],
"kegg.reaction":[
"R02783"
],
"metanetx.reaction":[
"MNXR105038"
],
"rhea":[
"16430",
"16429",
"16431",
"16432"
],
"sabiork":[
"2659"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02008",
"rxn11252"
]
}
},
{
"id":"UAMAS",
"name":"UDP-N-acetylmuramoyl-L-alanine synthetase",
"metabolites":{
"adp_c":1.0,
"ala__L_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uama_c":1.0,
"uamr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0129",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAMAS"
]
},
"annotation":{
"bigg.reaction":[
"UAMAS"
],
"biocyc":[
"META:UDP-NACMUR-ALA-LIG-RXN"
],
"ec-code":[
"6.3.2.8"
],
"kegg.reaction":[
"R03193"
],
"metanetx.reaction":[
"MNXR141024"
],
"rhea":[
"23372",
"23374",
"23373",
"23375"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11251",
"rxn02286"
]
}
},
{
"id":"TPI",
"name":"Triose-phosphate isomerase",
"metabolites":{
"dhap_c":-1.0,
"g3p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4081",
"subsystem":"GlycolysisGluconeogenesis",
"notes":{
"original_bigg_ids":[
"TPI"
]
},
"annotation":{
"bigg.reaction":[
"TPI"
],
"biocyc":[
"META:TRIOSEPISOMERIZATION-RXN"
],
"ec-code":[
"5.3.1.1"
],
"kegg.reaction":[
"R01015"
],
"metanetx.reaction":[
"MNXR104918"
],
"reactome.reaction":[
"R-RNO-70481",
"R-MMU-70481",
"R-XTR-70481",
"R-SSC-70481",
"R-GGA-352927",
"R-SCE-70454",
"R-CEL-70481",
"R-PFA-70454",
"R-XTR-70454",
"R-BTA-70481",
"R-BTA-70454",
"R-GGA-352914",
"R-ATH-70481",
"R-CFA-70454",
"R-OSA-70454",
"R-HSA-70481",
"R-DRE-70454",
"R-DME-70481",
"R-OSA-70481",
"R-DRE-70481",
"R-ATH-70454",
"R-HSA-70454",
"R-SSC-70454",
"R-DDI-70454",
"R-SCE-70481",
"R-CFA-70481",
"R-PFA-70481",
"R-DDI-70481",
"R-SPO-70454",
"R-SPO-70481",
"R-RNO-70454",
"R-MMU-70454",
"R-CEL-70454",
"R-GGA-70481",
"R-GGA-70454",
"R-DME-70454"
],
"rhea":[
"18587",
"18588",
"18586",
"18585"
],
"sabiork":[
"4"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00747"
]
}
},
{
"id":"SO2tex",
"name":"SO2 transport via diffusion (extracellular to periplasm)",
"metabolites":{
"so2_e":-1.0,
"so2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SO2tex"
]
},
"annotation":{
"bigg.reaction":[
"SO2tex"
],
"metanetx.reaction":[
"MNXR104456"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09258",
"rxn09259"
]
}
},
{
"id":"TPRDCOAS",
"name":"Triphosphoribosyl-dephospho-CoA synthase",
"metabolites":{
"2tpr3dpcoa_c":1.0,
"ade_c":1.0,
"atp_c":-1.0,
"dpcoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0619",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"TPRDCOAS"
]
},
"annotation":{
"bigg.reaction":[
"TPRDCOAS"
],
"biocyc":[
"META:2.7.8.25-RXN"
],
"ec-code":[
"2.4.2.52"
],
"kegg.reaction":[
"R09675"
],
"metanetx.reaction":[
"MNXR104920"
],
"rhea":[
"15119",
"15117",
"15120",
"15118"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09320"
]
}
},
{
"id":"TRDR",
"name":"Thioredoxin reductase (NADPH)",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"trdox_c":-1.0,
"trdrd_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM3915 and (STM0958 and STM0958)) or STM2649",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TRDR"
]
},
"annotation":{
"bigg.reaction":[
"TRDR"
],
"biocyc":[
"META:THIOREDOXIN-REDUCT-NADPH-RXN"
],
"ec-code":[
"1.8.1.9",
"1.6.4.5"
],
"kegg.reaction":[
"R02016"
],
"metanetx.reaction":[
"MNXR104766"
],
"sabiork":[
"489"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05289"
]
}
},
{
"id":"UAPGR",
"name":"UDP-N-acetylenolpyruvoylglucosamine reductase",
"metabolites":{
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"uaccg_c":-1.0,
"uamr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4137",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UAPGR"
]
},
"annotation":{
"bigg.reaction":[
"UAPGR"
],
"biocyc":[
"META:UDPNACETYLMURAMATEDEHYDROG-RXN"
],
"ec-code":[
"1.3.1.98"
],
"kegg.reaction":[
"R03192"
],
"metanetx.reaction":[
"MNXR141027"
],
"rhea":[
"12251",
"12250",
"12248",
"12249"
],
"sabiork":[
"3021"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02285"
]
}
},
{
"id":"UDCPDP",
"name":"Undecaprenyl-diphosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"udcpdp_c":-1.0,
"udcpp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1710 or STM0865 or STM3205",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPDP"
]
},
"annotation":{
"bigg.reaction":[
"UDCPDP"
],
"metanetx.reaction":[
"MNXR105042"
],
"rhea":[
"17069",
"17070",
"17072",
"17071"
],
"sabiork":[
"5225"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPDPS",
"name":"Undecaprenyl diphosphate synthase",
"metabolites":{
"frdp_c":-1.0,
"ipdp_c":-8.0,
"ppi_c":8.0,
"udcpdp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0221",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPDPS"
]
},
"annotation":{
"bigg.reaction":[
"UDCPDPS"
],
"biocyc":[
"META:RXN-9138"
],
"ec-code":[
"2.5.1",
"2.5.1.M1",
"2.5.1.31"
],
"metanetx.reaction":[
"MNXR105043"
],
"sabiork":[
"12133"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPDPpp",
"name":"Undecaprenyl-diphosphatase (periplasm)",
"metabolites":{
"h2o_p":-1.0,
"h_p":1.0,
"pi_p":1.0,
"udcpdp_p":-1.0,
"udcpp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0865 or STM1710 or STM3205",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPDPpp"
]
},
"annotation":{
"bigg.reaction":[
"UDCPDPpp"
],
"metanetx.reaction":[
"MNXR105042"
],
"rhea":[
"17069",
"17070",
"17072",
"17071"
],
"sabiork":[
"5225"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPPtppi",
"name":"Undecaprenyl phosphate transport (cytoplasm to periplasm)",
"metabolites":{
"udcpp_c":1.0,
"udcpp_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"UDCPPtppi"
]
},
"annotation":{
"bigg.reaction":[
"UDCPPtppi"
],
"metanetx.reaction":[
"MNXR105045"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09346"
]
}
},
{
"id":"TRE6PH",
"name":"Trehalose-6-phosphate hydrolase",
"metabolites":{
"g6p_c":1.0,
"glc__D_c":1.0,
"h2o_c":-1.0,
"tre6p_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4453",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TRE6PH"
]
},
"annotation":{
"bigg.reaction":[
"TRE6PH"
],
"biocyc":[
"META:TRE6PHYDRO-RXN"
],
"ec-code":[
"3.2.1.93",
"3.2.1.122"
],
"kegg.reaction":[
"R06113",
"R00837"
],
"metanetx.reaction":[
"MNXR104925"
],
"rhea":[
"23009",
"23010",
"23008",
"23011"
],
"sabiork":[
"1178"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00606"
]
}
},
{
"id":"TRE6PP",
"name":"Trehalose-phosphatase",
"metabolites":{
"h2o_c":-1.0,
"pi_c":1.0,
"tre6p_c":-1.0,
"tre_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1929",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TRE6PP"
]
},
"annotation":{
"bigg.reaction":[
"TRE6PP"
],
"biocyc":[
"META:TREHALOSEPHOSPHA-RXN"
],
"ec-code":[
"3.1.3.12"
],
"kegg.reaction":[
"R02778",
"R06228"
],
"metanetx.reaction":[
"MNXR104926"
],
"reactome.reaction":[
"R-MTU-868608"
],
"rhea":[
"23420",
"23423",
"23422",
"23421"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02004"
]
}
},
{
"id":"TRE6PS",
"name":"Alpha,alpha-trehalose-phosphate synthase (UDP-forming)",
"metabolites":{
"g6p_c":-1.0,
"h_c":1.0,
"tre6p_c":1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1928",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TRE6PS"
]
},
"annotation":{
"bigg.reaction":[
"TRE6PS"
],
"biocyc":[
"META:TREHALOSE6PSYN-RXN"
],
"ec-code":[
"2.4.1.15"
],
"kegg.reaction":[
"R00836",
"R06043"
],
"metanetx.reaction":[
"MNXR143415"
],
"rhea":[
"18890",
"18891",
"18889",
"18892"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00605"
]
}
},
{
"id":"TREH",
"name":"Alpha,alpha-trehalase",
"metabolites":{
"glc__D_c":2.0,
"h2o_c":-1.0,
"tre_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3603",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TREH"
]
},
"annotation":{
"bigg.reaction":[
"TREH"
],
"ec-code":[
"3.2.1.28"
],
"kegg.reaction":[
"R00010",
"R06103"
],
"metanetx.reaction":[
"MNXR95163"
],
"rhea":[
"20868",
"20869",
"20870",
"20871"
],
"sabiork":[
"6476"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00007"
]
}
},
{
"id":"UDPACGALtex",
"name":"UDP-N-acetyl-D-galactosamine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"udpacgal_e":-1.0,
"udpacgal_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"UDPACGALtex"
]
},
"annotation":{
"bigg.reaction":[
"UDPACGALtex"
],
"metanetx.reaction":[
"MNXR105046"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09347"
]
}
},
{
"id":"SO2tpp",
"name":"SO2 transport via diffusion (periplasm)",
"metabolites":{
"so2_c":1.0,
"so2_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SO2tpp"
]
},
"annotation":{
"bigg.reaction":[
"SO2tpp"
],
"metanetx.reaction":[
"MNXR104456"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09258",
"rxn09259"
]
}
},
{
"id":"UDPG4E",
"name":"UDPglucose 4-epimerase",
"metabolites":{
"udpg_c":-1.0,
"udpgal_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0776",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UDPG4E"
]
},
"annotation":{
"bigg.reaction":[
"UDPG4E"
],
"biocyc":[
"META:UDPGLUCEPIM-RXN"
],
"ec-code":[
"5.1.3.2"
],
"kegg.reaction":[
"R00291"
],
"metanetx.reaction":[
"MNXR143428"
],
"reactome.reaction":[
"R-CEL-70369",
"R-SSC-70369",
"R-ATH-70369",
"R-TGU-70369",
"R-HSA-70369",
"R-DRE-70369",
"R-RNO-70369",
"R-DDI-70369",
"R-BTA-70369",
"R-SCE-70369",
"R-DME-70369",
"R-SPO-70369",
"R-CFA-70369",
"R-MMU-70369",
"R-GGA-70369",
"R-XTR-70369",
"R-OSA-70369"
],
"rhea":[
"22170",
"22168",
"22169",
"22171"
],
"sabiork":[
"70",
"8974"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00214"
]
}
},
{
"id":"UDPGALPpp",
"name":"UDPgalactose pyrophosphohydrolase",
"metabolites":{
"gal1p_p":1.0,
"h2o_p":-1.0,
"h_p":2.0,
"udpgal_p":-1.0,
"ump_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UDPGALPpp"
]
},
"annotation":{
"bigg.reaction":[
"UDPGALPpp"
],
"ec-code":[
"3.6.1.45"
],
"metanetx.reaction":[
"MNXR105060"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09348"
]
}
},
{
"id":"UDPGALtex",
"name":"UDPgalactose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"udpgal_e":-1.0,
"udpgal_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"UDPGALtex"
]
},
"annotation":{
"bigg.reaction":[
"UDPGALtex"
],
"metanetx.reaction":[
"MNXR105061"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09349",
"rxn13413"
]
}
},
{
"id":"TREHpp",
"name":"Alpha,alpha-trehalase (periplasm)",
"metabolites":{
"glc__D_p":2.0,
"h2o_p":-1.0,
"tre_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1796",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TREHpp"
]
},
"annotation":{
"bigg.reaction":[
"TREHpp"
],
"ec-code":[
"3.2.1.28"
],
"kegg.reaction":[
"R00010",
"R06103"
],
"metanetx.reaction":[
"MNXR95163"
],
"rhea":[
"20868",
"20869",
"20870",
"20871"
],
"sabiork":[
"6476"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00007"
]
}
},
{
"id":"TREptspp",
"name":"Trehalose transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"pep_c":-1.0,
"pyr_c":1.0,
"tre6p_c":1.0,
"tre_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2433 and STM2431 and STM2432 and STM4454",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"TREptspp"
]
},
"annotation":{
"bigg.reaction":[
"TREptspp"
],
"ec-code":[
"2.7.1.69"
],
"metanetx.reaction":[
"MNXR104931"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09322",
"rxn02005"
]
}
},
{
"id":"TREtex",
"name":"Trehalose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tre_e":-1.0,
"tre_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TREtex"
]
},
"annotation":{
"bigg.reaction":[
"TREtex"
],
"metanetx.reaction":[
"MNXR104933"
],
"rhea":[
"17631",
"17632",
"17630",
"17629"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09323"
]
}
},
{
"id":"TRPS1",
"name":"Tryptophan synthase (indoleglycerol phosphate)",
"metabolites":{
"3ig3p_c":-1.0,
"g3p_c":1.0,
"h2o_c":1.0,
"ser__L_c":-1.0,
"trp__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1727 and STM1726",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"TRPS1"
]
},
"annotation":{
"bigg.reaction":[
"TRPS1"
],
"biocyc":[
"META:TRYPSYN-RXN"
],
"ec-code":[
"4.2.1.20"
],
"kegg.reaction":[
"R02722"
],
"metanetx.reaction":[
"MNXR104343"
],
"rhea":[
"10535",
"10533",
"10534",
"10532"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01964"
]
}
},
{
"id":"UDPGD",
"name":"UDPglucose 6-dehydrogenase",
"metabolites":{
"h2o_c":-1.0,
"h_c":3.0,
"nad_c":-2.0,
"nadh_c":2.0,
"udpg_c":-1.0,
"udpglcur_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2080",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDPGD"
]
},
"annotation":{
"bigg.reaction":[
"UDPGD"
],
"biocyc":[
"META:UGD-RXN"
],
"ec-code":[
"1.1.1.22"
],
"kegg.reaction":[
"R00286"
],
"metanetx.reaction":[
"MNXR141783"
],
"reactome.reaction":[
"R-TGU-173597",
"R-SSC-173597",
"R-OSA-173597",
"R-RNO-173597",
"R-GGA-173597",
"R-MMU-173597",
"R-XTR-173597",
"R-DRE-173597",
"R-CEL-173597",
"R-CFA-173597",
"R-BTA-173597",
"R-DME-173597",
"R-ATH-173597",
"R-HSA-173597"
],
"rhea":[
"23598",
"23599",
"23597",
"23596"
],
"sabiork":[
"8582",
"784"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00211"
]
}
},
{
"id":"UDPGDC",
"name":"UDP-glucuronate C-4'' decarboxylase",
"metabolites":{
"co2_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"udpLa4o_c":1.0,
"udpglcur_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2299",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"UDPGDC"
]
},
"annotation":{
"bigg.reaction":[
"UDPGDC"
],
"biocyc":[
"META:RXN0-1861"
],
"ec-code":[
"1.1.1.305"
],
"kegg.reaction":[
"R07658"
],
"metanetx.reaction":[
"MNXR105064"
],
"rhea":[
"24703",
"24705",
"24704",
"24702"
],
"sabiork":[
"12883"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07473",
"rxn09351"
]
}
},
{
"id":"TRPS2",
"name":"Tryptophan synthase (indole)",
"metabolites":{
"h2o_c":1.0,
"indole_c":-1.0,
"ser__L_c":-1.0,
"trp__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1727 and STM1726",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"TRPS2"
]
},
"annotation":{
"bigg.reaction":[
"TRPS2"
],
"biocyc":[
"META:RXN0-2382"
],
"ec-code":[
"4.2.1.122",
"4.2.1.20"
],
"kegg.reaction":[
"R00674"
],
"metanetx.reaction":[
"MNXR104946"
],
"rhea":[
"26436",
"26435",
"26437",
"26434"
],
"sabiork":[
"1054"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00474"
]
}
},
{
"id":"SO3tex",
"name":"Sulfite transport via diffusion (extracellular to periplasm)",
"metabolites":{
"so3_e":-1.0,
"so3_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1473 or STM2267 or STM0320 or STM0999",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SO3tex"
]
},
"annotation":{
"bigg.reaction":[
"SO3tex"
],
"metanetx.reaction":[
"MNXR104460"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12453",
"rxn09260"
]
}
},
{
"id":"TRPS3",
"name":"Tryptophan synthase (indoleglycerol phosphate)",
"metabolites":{
"3ig3p_c":-1.0,
"g3p_c":1.0,
"indole_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1727 and STM1726",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"TRPS3"
]
},
"annotation":{
"bigg.reaction":[
"TRPS3"
],
"biocyc":[
"META:RXN0-2381"
],
"ec-code":[
"4.1.2.8",
"4.2.1.20"
],
"kegg.reaction":[
"R02340"
],
"metanetx.reaction":[
"MNXR99889"
],
"rhea":[
"14082",
"14081",
"14083",
"14084"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01682"
]
}
},
{
"id":"TRPTRS",
"name":"Tryptophanyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnatrp_c":-1.0,
"trp__L_c":-1.0,
"trptrna_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3481",
"subsystem":"tRNA Charging",
"notes":{
"original_bigg_ids":[
"TRPTRS"
]
},
"annotation":{
"bigg.reaction":[
"TRPTRS"
],
"ec-code":[
"6.1.1.2"
],
"kegg.reaction":[
"R03664"
],
"metanetx.reaction":[
"MNXR104948"
],
"reactome.reaction":[
"R-HSA-379977",
"R-HSA-380222"
],
"sabiork":[
"408"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06448"
]
}
},
{
"id":"UDPGLCURtex",
"name":"UDP-D-glucuronate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"udpglcur_e":-1.0,
"udpglcur_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"UDPGLCURtex"
]
},
"annotation":{
"bigg.reaction":[
"UDPGLCURtex"
],
"metanetx.reaction":[
"MNXR105066"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09352"
]
}
},
{
"id":"UDPGPpp",
"name":"UDPglucose pyrophosphohydrolase",
"metabolites":{
"g1p_p":1.0,
"h2o_p":-1.0,
"h_p":2.0,
"udpg_p":-1.0,
"ump_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UDPGPpp"
]
},
"annotation":{
"bigg.reaction":[
"UDPGPpp"
],
"ec-code":[
"3.6.1.8",
"3.6.1.45",
"3.6.1.9"
],
"kegg.reaction":[
"R00287"
],
"metanetx.reaction":[
"MNXR143430"
],
"reactome.reaction":[
"R-CFA-6810464",
"R-CEL-6810464",
"R-GGA-6810464",
"R-DRE-6810464",
"R-MMU-6810464",
"R-HSA-6810464",
"R-RNO-6810464",
"R-SSC-6810464",
"R-BTA-6810464",
"R-DME-6810464",
"R-TGU-6810464"
],
"rhea":[
"29558",
"29557",
"29555",
"29556"
],
"sabiork":[
"446"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00212"
]
}
},
{
"id":"UDPGtex",
"name":"UDPglucose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"udpg_e":-1.0,
"udpg_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"UDPGtex"
]
},
"annotation":{
"bigg.reaction":[
"UDPGtex"
],
"metanetx.reaction":[
"MNXR143086"
],
"sabiork":[
"11025"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09353"
]
}
},
{
"id":"SO4tex",
"name":"Sulfate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"so4_e":-1.0,
"so4_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SO4tex"
]
},
"annotation":{
"bigg.reaction":[
"SO4tex"
],
"metanetx.reaction":[
"MNXR104469"
],
"reactome.reaction":[
"R-TGU-8875871",
"R-DRE-8875871",
"R-GGA-8875871",
"R-BTA-8875871",
"R-SCE-8875871",
"R-HSA-8875871",
"R-SPO-8875871",
"R-XTR-8875871",
"R-MMU-8875871",
"R-RNO-8875871",
"R-SSC-8875871",
"R-PFA-8875871",
"R-ATH-8875871",
"R-CFA-8875871",
"R-OSA-8875871",
"R-DME-8875871"
],
"rhea":[
"34983",
"34984",
"34986",
"34985"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09261",
"rxn05238"
]
}
},
{
"id":"UDPKAAT",
"name":"UDP-4''-ketopentose:UDP-4-amino-4-deoxy-L-arabinose aminotransferase",
"metabolites":{
"akg_c":1.0,
"glu__L_c":-1.0,
"udpLa4n_c":1.0,
"udpLa4o_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2297",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"UDPKAAT"
]
},
"annotation":{
"bigg.reaction":[
"UDPKAAT"
],
"biocyc":[
"META:RXN0-1863"
],
"ec-code":[
"2.6.1.87"
],
"kegg.reaction":[
"R07659"
],
"metanetx.reaction":[
"MNXR105074"
],
"rhea":[
"24712",
"24710",
"24711",
"24713"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07474"
]
}
},
{
"id":"UGLCURPpp",
"name":"UDP-D-glucuronate pyrophosphohydrolase (periplasm)",
"metabolites":{
"glcur1p_p":1.0,
"h2o_p":-1.0,
"h_p":2.0,
"udpglcur_p":-1.0,
"ump_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0494",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UGLCURPpp"
]
},
"annotation":{
"bigg.reaction":[
"UGLCURPpp"
],
"metanetx.reaction":[
"MNXR105055"
],
"rhea":[
"29562",
"29559",
"29561",
"29560"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09355"
]
}
},
{
"id":"UGLT",
"name":"UDPglucose--hexose-1-phosphate uridylyltransferase",
"metabolites":{
"g1p_c":1.0,
"gal1p_c":-1.0,
"udpg_c":-1.0,
"udpgal_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0775",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"UGLT"
]
},
"annotation":{
"bigg.reaction":[
"UGLT"
],
"biocyc":[
"META:GALACTURIDYLYLTRANS-RXN"
],
"ec-code":[
"2.7.7.12"
],
"kegg.reaction":[
"R00955"
],
"metanetx.reaction":[
"MNXR143436"
],
"reactome.reaction":[
"R-GGA-70361",
"R-DRE-70361",
"R-HSA-70361",
"R-XTR-70361",
"R-SPO-70361",
"R-SSC-70361",
"R-BTA-70361",
"R-ATH-70361",
"R-MMU-70361",
"R-RNO-70361",
"R-CFA-70361",
"R-DME-70361",
"R-OSA-70361",
"R-SCE-70361",
"R-TGU-70361",
"R-CEL-70361"
],
"rhea":[
"13989",
"13991",
"13992",
"13990"
],
"sabiork":[
"1268",
"8526"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00701"
]
}
},
{
"id":"TRPt2rpp",
"name":"L-tryptophan reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"trp__L_c":1.0,
"trp__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0150 or STM3279",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"TRPt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"TRPt2rpp"
],
"biocyc":[
"META:TRANS-RXN-76"
],
"metanetx.reaction":[
"MNXR104950"
],
"rhea":[
"28882",
"28881",
"28880",
"28879"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09709",
"rxn09326",
"rxn05663"
]
}
},
{
"id":"TRPtex",
"name":"L-tryptophan transport via diffusion (extracellular to periplasm)",
"metabolites":{
"trp__L_e":-1.0,
"trp__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TRPtex"
]
},
"annotation":{
"bigg.reaction":[
"TRPtex"
],
"biocyc":[
"META:RXN66-449"
],
"metanetx.reaction":[
"MNXR104949"
],
"sabiork":[
"14017",
"13425"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09327",
"rxn05222"
]
}
},
{
"id":"TRSARr",
"name":"Tartronate semialdehyde reductase",
"metabolites":{
"2h3oppan_c":-1.0,
"glyc__R_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0519 or STM3248",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TRSARr"
]
},
"annotation":{
"bigg.reaction":[
"TRSARr"
],
"biocyc":[
"META:RXN0-5289"
],
"ec-code":[
"1.1.1",
"1.1.1.60"
],
"kegg.reaction":[
"R01745"
],
"metanetx.reaction":[
"MNXR100682"
],
"rhea":[
"18846",
"18845",
"18847",
"18848"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01280"
]
}
},
{
"id":"TSULabcpp",
"name":"Thiosulfate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"tsul_c":1.0,
"tsul_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2441 and STM2444 and STM2443 and STM2442) or (STM2441 and STM2443 and STM2442 and STM4063)",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"TSULabcpp"
]
},
"annotation":{
"bigg.reaction":[
"TSULabcpp"
],
"biocyc":[
"META:ABC-7-RXN"
],
"ec-code":[
"3.6.3.25"
],
"metanetx.reaction":[
"MNXR104964"
],
"rhea":[
"29872#1",
"29873#1",
"29874#1",
"29871#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05176",
"rxn09329"
]
}
},
{
"id":"TSULtex",
"name":"Thiosulfate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tsul_e":-1.0,
"tsul_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TSULtex"
]
},
"annotation":{
"bigg.reaction":[
"TSULtex"
],
"metanetx.reaction":[
"MNXR104966"
],
"rhea":[
"32808",
"32810",
"32807",
"32809"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09330"
]
}
},
{
"id":"UGLYCH",
"name":"Ureidoglycolate hydrolase",
"metabolites":{
"co2_c":1.0,
"glx_c":1.0,
"h2o_c":-1.0,
"h_c":-2.0,
"nh4_c":2.0,
"urdglyc_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0515",
"subsystem":"Nitrogen Metabolism",
"notes":{
"original_bigg_ids":[
"UGLYCH"
]
},
"annotation":{
"bigg.reaction":[
"UGLYCH"
],
"biocyc":[
"META:UREIDOGLYCOLATE-HYDROLASE-RXN"
],
"ec-code":[
"3.5.3.19",
"3.5.1.116"
],
"kegg.reaction":[
"R00469"
],
"metanetx.reaction":[
"MNXR105091"
],
"rhea":[
"19811",
"19810",
"19812",
"19809"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00327"
]
}
},
{
"id":"UGMDDS",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase",
"metabolites":{
"adp_c":1.0,
"alaala_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"ugmd_c":-1.0,
"ugmda_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0124",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UGMDDS"
]
},
"annotation":{
"bigg.reaction":[
"UGMDDS"
],
"ec-code":[
"6.3.2.10"
],
"metanetx.reaction":[
"MNXR105094"
],
"sabiork":[
"4284"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UHGADA",
"name":"UDP-3-O-acetylglucosamine deacetylase",
"metabolites":{
"ac_c":1.0,
"h2o_c":-1.0,
"u3aga_c":-1.0,
"u3hga_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0134",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"UHGADA"
]
},
"annotation":{
"bigg.reaction":[
"UHGADA"
],
"biocyc":[
"META:UDPACYLGLCNACDEACETYL-RXN"
],
"ec-code":[
"3.5.1.108"
],
"kegg.reaction":[
"R04587"
],
"metanetx.reaction":[
"MNXR105110"
],
"rhea":[
"25212",
"25209",
"25211",
"25210"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03146"
]
}
},
{
"id":"SOTA",
"name":"Succinylornithine transaminase",
"metabolites":{
"akg_c":-1.0,
"glu__L_c":1.0,
"sucgsa_c":1.0,
"sucorn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1303",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SOTA"
]
},
"annotation":{
"bigg.reaction":[
"SOTA"
],
"biocyc":[
"META:SUCCORNTRANSAM-RXN"
],
"ec-code":[
"2.6.1.81"
],
"kegg.reaction":[
"R04217"
],
"metanetx.reaction":[
"MNXR104477"
],
"rhea":[
"16954",
"16953",
"16956",
"16955"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02944"
]
}
},
{
"id":"ULA4NFT",
"name":"UDP-L-Ara4N formyltransferase",
"metabolites":{
"10fthf_c":-1.0,
"h_c":1.0,
"thf_c":1.0,
"udpLa4fn_c":1.0,
"udpLa4n_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2299",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ULA4NFT"
]
},
"annotation":{
"bigg.reaction":[
"ULA4NFT"
],
"ec-code":[
"2.1.2.13"
],
"kegg.reaction":[
"R07660"
],
"metanetx.reaction":[
"MNXR105113"
],
"rhea":[
"24708",
"24706",
"24709",
"24707"
],
"sbo":"SBO:0000176"
}
},
{
"id":"URDGLYCD",
"name":"Ureidoglycolate dehydrogenase",
"metabolites":{
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"oxur_c":1.0,
"urdglyc_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0528",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"URDGLYCD"
]
},
"annotation":{
"bigg.reaction":[
"URDGLYCD"
],
"biocyc":[
"META:RXN0-7024"
],
"ec-code":[
"1.1.1.154",
"1.1.1.350"
],
"kegg.reaction":[
"R02935"
],
"metanetx.reaction":[
"MNXR105152"
],
"rhea":[
"15330",
"15331",
"15332",
"15329"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02102"
]
}
},
{
"id":"ULA4Ntppi",
"name":"Transport (cytoplasm to periplasm)",
"metabolites":{
"uLa4n_c":-1.0,
"uLa4n_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ULA4Ntppi"
]
},
"annotation":{
"bigg.reaction":[
"ULA4Ntppi"
],
"metanetx.reaction":[
"MNXR105114"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09357"
]
}
},
{
"id":"SPMDAT1",
"name":"Spermidine acetyltransferase",
"metabolites":{
"N1aspmd_c":1.0,
"accoa_c":-1.0,
"coa_c":1.0,
"h_c":1.0,
"spmd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1502",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SPMDAT1"
]
},
"annotation":{
"bigg.reaction":[
"SPMDAT1"
],
"biocyc":[
"META:SPERMACTRAN-RXN"
],
"ec-code":[
"2.3.1.57"
],
"metanetx.reaction":[
"MNXR104491"
],
"reactome.reaction":[
"R-DDI-351208",
"R-SSC-351208",
"R-TGU-351208",
"R-HSA-351208",
"R-DRE-351208",
"R-BTA-351208",
"R-DME-351208",
"R-GGA-351208",
"R-XTR-351208",
"R-CFA-351208",
"R-RNO-351208",
"R-MMU-351208",
"R-CEL-351208",
"R-SPO-351208"
],
"rhea":[
"28153",
"28151",
"28152",
"28150"
],
"sabiork":[
"7731"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09264"
]
}
},
{
"id":"UREAtex",
"name":"Urea transport via diffusion (extracellular to periplasm)",
"metabolites":{
"urea_e":-1.0,
"urea_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"UREAtex"
]
},
"annotation":{
"bigg.reaction":[
"UREAtex"
],
"biocyc":[
"META:TRANS-RXN0-460"
],
"metanetx.reaction":[
"MNXR105156"
],
"reactome.reaction":[
"R-DRE-444126",
"R-XTR-444126",
"R-SSC-507873",
"R-GGA-507875",
"R-GGA-507873",
"R-SPO-507873",
"R-CEL-507873",
"R-HSA-507875",
"R-RNO-507875",
"R-SCE-507875",
"R-TGU-507875",
"R-CEL-507875",
"R-PFA-507873",
"R-SSC-507875",
"R-MMU-444126",
"R-MMU-507873",
"R-HSA-507873",
"R-XTR-507875",
"R-MMU-507875",
"R-SPO-507875",
"R-CFA-444126",
"R-CFA-507875",
"R-GGA-444126",
"R-PFA-507875",
"R-DRE-507875",
"R-XTR-507873",
"R-TGU-444126",
"R-RNO-507873",
"R-TGU-507873",
"R-SSC-444126",
"R-DRE-507873",
"R-BTA-507875",
"R-RNO-444126",
"R-SCE-507873",
"R-CFA-507873",
"R-BTA-444126",
"R-HSA-444126",
"R-BTA-507873"
],
"rhea":[
"32802",
"32799",
"32801",
"32800"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09369",
"rxn05667",
"rxn09368"
]
}
},
{
"id":"UREAtpp",
"name":"Urea transport via facilitate diffusion (periplasm)",
"metabolites":{
"urea_c":1.0,
"urea_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4087",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"UREAtpp"
]
},
"annotation":{
"bigg.reaction":[
"UREAtpp"
],
"biocyc":[
"META:TRANS-RXN0-460"
],
"metanetx.reaction":[
"MNXR105156"
],
"reactome.reaction":[
"R-DRE-444126",
"R-XTR-444126",
"R-SSC-507873",
"R-GGA-507875",
"R-GGA-507873",
"R-SPO-507873",
"R-CEL-507873",
"R-HSA-507875",
"R-RNO-507875",
"R-SCE-507875",
"R-TGU-507875",
"R-CEL-507875",
"R-PFA-507873",
"R-SSC-507875",
"R-MMU-444126",
"R-MMU-507873",
"R-HSA-507873",
"R-XTR-507875",
"R-MMU-507875",
"R-SPO-507875",
"R-CFA-444126",
"R-CFA-507875",
"R-GGA-444126",
"R-PFA-507875",
"R-DRE-507875",
"R-XTR-507873",
"R-TGU-444126",
"R-RNO-507873",
"R-TGU-507873",
"R-SSC-444126",
"R-DRE-507873",
"R-BTA-507875",
"R-RNO-444126",
"R-SCE-507873",
"R-CFA-507873",
"R-BTA-444126",
"R-HSA-444126",
"R-BTA-507873"
],
"rhea":[
"32802",
"32799",
"32801",
"32800"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09369",
"rxn05667",
"rxn09368"
]
}
},
{
"id":"SPMDAT2",
"name":"Spermidine acetyltransferase (N8)",
"metabolites":{
"accoa_c":-1.0,
"coa_c":1.0,
"h_c":1.0,
"n8aspmd_c":1.0,
"spmd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1502",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SPMDAT2"
]
},
"annotation":{
"bigg.reaction":[
"SPMDAT2"
],
"biocyc":[
"META:RXN0-7165"
],
"ec-code":[
"2.6.1.29",
"2.3.1.57"
],
"metanetx.reaction":[
"MNXR104492"
],
"rhea":[
"28272",
"28273",
"28270",
"28271"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09265"
]
}
},
{
"id":"URIC",
"name":"Uricase",
"metabolites":{
"alltn_c":1.0,
"co2_c":1.0,
"h2o2_c":1.0,
"h2o_c":-2.0,
"o2_c":-1.0,
"urate_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"URIC"
]
},
"annotation":{
"bigg.reaction":[
"URIC"
],
"ec-code":[
"1.7.3.3"
],
"metanetx.reaction":[
"MNXR105159"
],
"rhea":[
"30654",
"30652",
"30653",
"30651"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09370"
]
}
},
{
"id":"URIDK2r",
"name":"Uridylate kinase (dUMP)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"dudp_c":1.0,
"dump_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0218",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"URIDK2r"
]
},
"annotation":{
"bigg.reaction":[
"URIDK2r"
],
"biocyc":[
"META:RXN-14122"
],
"ec-code":[
"2.7.4.13",
"2.7.4.4",
"2.7.4.9"
],
"kegg.reaction":[
"R02098"
],
"metanetx.reaction":[
"MNXR105160"
],
"rhea":[
"30658",
"30655",
"30656",
"30657"
],
"sabiork":[
"499"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01517"
]
}
},
{
"id":"URIH",
"name":"Uridine hydrolase",
"metabolites":{
"h2o_c":-1.0,
"rib__D_c":1.0,
"ura_c":1.0,
"uri_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0661 or STM0051",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"URIH"
]
},
"annotation":{
"bigg.reaction":[
"URIH"
],
"biocyc":[
"META:URIDINE-NUCLEOSIDASE-RXN"
],
"ec-code":[
"3.2.2.3"
],
"kegg.reaction":[
"R01080"
],
"metanetx.reaction":[
"MNXR105161"
],
"rhea":[
"15580",
"15578",
"15579",
"15577"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00797"
]
}
},
{
"id":"UM3PL",
"name":"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase",
"metabolites":{
"LalaDgluMdap_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uamr_c":-1.0,
"ugmd_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4416",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"UM3PL"
]
},
"annotation":{
"bigg.reaction":[
"UM3PL"
],
"metanetx.reaction":[
"MNXR143440"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UM4PCP",
"name":"UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase",
"metabolites":{
"ala__D_c":1.0,
"h2o_c":-1.0,
"ugmd_c":1.0,
"um4p_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1800",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"UM4PCP"
]
},
"annotation":{
"bigg.reaction":[
"UM4PCP"
],
"metanetx.reaction":[
"MNXR105116"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UM4PL",
"name":"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate-D-alanine ligase",
"metabolites":{
"LalaDgluMdapDala_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"uamr_c":-1.0,
"um4p_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4416",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"UM4PL"
]
},
"annotation":{
"bigg.reaction":[
"UM4PL"
],
"metanetx.reaction":[
"MNXR143441"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09360"
]
}
},
{
"id":"URIK2",
"name":"Uridine kinase (GTP:Uridine)",
"metabolites":{
"gdp_c":1.0,
"gtp_c":-1.0,
"h_c":1.0,
"ump_c":1.0,
"uri_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2122",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"URIK2"
]
},
"annotation":{
"bigg.reaction":[
"URIK2"
],
"biocyc":[
"META:URKI-RXN"
],
"ec-code":[
"2.7.1.48"
],
"kegg.reaction":[
"R00968"
],
"metanetx.reaction":[
"MNXR105163"
],
"rhea":[
"27650",
"27651",
"27652",
"27653"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00713"
]
}
},
{
"id":"SPMDabcpp",
"name":"Spermidine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"spmd_c":1.0,
"spmd_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1226 and STM1225 and STM1223 and STM1222",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SPMDabcpp"
]
},
"annotation":{
"bigg.reaction":[
"SPMDabcpp"
],
"biocyc":[
"META:ABC-24-RXN"
],
"ec-code":[
"3.6.3.31"
],
"metanetx.reaction":[
"MNXR104494"
],
"rhea":[
"30000#1",
"29999#1",
"30002#1",
"30001#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05175",
"rxn11262",
"rxn09263"
]
}
},
{
"id":"URIt2pp_copy1",
"name":"Uridine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"uri_c":1.0,
"uri_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3113 or STM2409",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"URIt2pp",
"URIt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"URIt2pp"
],
"biocyc":[
"META:TRANS-RXN-108I"
],
"metanetx.reaction":[
"MNXR105166"
],
"rhea":[
"29953",
"29954",
"29952",
"29951"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09371",
"rxn05199"
]
}
},
{
"id":"UMPK",
"name":"UMP kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"udp_c":1.0,
"ump_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0980 or STM0218",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"UMPK"
]
},
"annotation":{
"bigg.reaction":[
"UMPK"
],
"biocyc":[
"META:RXN-12002"
],
"ec-code":[
"2.7.4.4",
"2.7.4.22",
"2.7.4.14"
],
"kegg.reaction":[
"R00158"
],
"metanetx.reaction":[
"MNXR105118"
],
"rhea":[
"24400",
"24402",
"24401",
"24403"
],
"sabiork":[
"201"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00119"
]
}
},
{
"id":"UMPtex",
"name":"UMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ump_e":-1.0,
"ump_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0999 or STM1473 or STM2267 or STM0320",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"UMPtex"
]
},
"annotation":{
"bigg.reaction":[
"UMPtex"
],
"metanetx.reaction":[
"MNXR105127"
],
"rhea":[
"27927",
"27929",
"27926",
"27928"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09808",
"rxn09361"
]
}
},
{
"id":"URIt2pp_copy2",
"name":"Uridine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"uri_c":1.0,
"uri_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2421",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"URIt2pp",
"URIt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"URIt2pp"
],
"biocyc":[
"META:TRANS-RXN-108I"
],
"metanetx.reaction":[
"MNXR105166"
],
"rhea":[
"29953",
"29954",
"29952",
"29951"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09371",
"rxn05199"
]
}
},
{
"id":"SPMDtex",
"name":"Spermidine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"spmd_e":-1.0,
"spmd_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SPMDtex"
]
},
"annotation":{
"bigg.reaction":[
"SPMDtex"
],
"metanetx.reaction":[
"MNXR104495"
],
"rhea":[
"35040",
"35039",
"35042",
"35041"
],
"sabiork":[
"13767"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13397",
"rxn09266"
]
}
},
{
"id":"URItex",
"name":"Uridine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"uri_e":-1.0,
"uri_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0413",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"URItex"
]
},
"annotation":{
"bigg.reaction":[
"URItex"
],
"metanetx.reaction":[
"MNXR105165"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10987",
"rxn09372"
]
}
},
{
"id":"USHD",
"name":"UDP-sugar hydrolase",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"lipidX_c":1.0,
"u23ga_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0535",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"USHD"
]
},
"annotation":{
"bigg.reaction":[
"USHD"
],
"biocyc":[
"META:LIPIDXSYNTHESIS-RXN"
],
"ec-code":[
"3.6.1.54"
],
"kegg.reaction":[
"R04549"
],
"metanetx.reaction":[
"MNXR105170"
],
"rhea":[
"25216",
"25215",
"25214",
"25213"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03130"
]
}
},
{
"id":"UNK3",
"name":"2-keto-4-methylthiobutyrate transamination",
"metabolites":{
"2kmb_c":-1.0,
"akg_c":1.0,
"glu__L_c":-1.0,
"met__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4248",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"UNK3"
]
},
"annotation":{
"bigg.reaction":[
"UNK3"
],
"biocyc":[
"META:RXN-14147"
],
"ec-code":[
"2.6.1.57",
"2.6.1.5"
],
"kegg.reaction":[
"R07396"
],
"metanetx.reaction":[
"MNXR95923"
],
"rhea":[
"25799",
"25797",
"25796",
"25798"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn05108"
]
}
},
{
"id":"UPLA4FNF",
"name":"Undecaprenyl phosphate-L-Ara4FN formylase",
"metabolites":{
"for_c":1.0,
"h2o_c":-1.0,
"uLa4fn_c":-1.0,
"uLa4n_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"UPLA4FNF"
]
},
"annotation":{
"bigg.reaction":[
"UPLA4FNF"
],
"metanetx.reaction":[
"MNXR105132"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09363"
]
}
},
{
"id":"UPLA4FNT",
"name":"Undecaprenyl phosphate-L-Ara4FN transferase",
"metabolites":{
"uLa4fn_c":1.0,
"udcpp_c":-1.0,
"udpLa4fn_c":-1.0,
"udp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2298",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"UPLA4FNT"
]
},
"annotation":{
"bigg.reaction":[
"UPLA4FNT"
],
"metanetx.reaction":[
"MNXR105133"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UPP3MT",
"name":"Uroporphyrinogen methyltransferase",
"metabolites":{
"ahcys_c":2.0,
"amet_c":-2.0,
"dscl_c":1.0,
"h_c":1.0,
"uppg3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3936 or STM3477",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"UPP3MT"
]
},
"annotation":{
"bigg.reaction":[
"UPP3MT"
],
"biocyc":[
"META:RXN-13403"
],
"ec-code":[
"2.1.1.107"
],
"kegg.reaction":[
"R03194"
],
"metanetx.reaction":[
"MNXR105137"
],
"rhea":[
"32462",
"32461",
"32459",
"32460"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02287"
]
}
},
{
"id":"UPP3S",
"name":"Uroporphyrinogen-III synthase",
"metabolites":{
"h2o_c":1.0,
"hmbil_c":-1.0,
"uppg3_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3937",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"UPP3S"
]
},
"annotation":{
"bigg.reaction":[
"UPP3S"
],
"biocyc":[
"META:UROGENIIISYN-RXN"
],
"ec-code":[
"4.2.1.75"
],
"kegg.reaction":[
"R03165"
],
"metanetx.reaction":[
"MNXR105139"
],
"reactome.reaction":[
"R-MMU-189488",
"R-DME-189488",
"R-RNO-189488",
"R-SCE-189488",
"R-DRE-189488",
"R-CFA-189488",
"R-TGU-189488",
"R-SSC-189488",
"R-HSA-189488",
"R-GGA-189488",
"R-GGA-421482",
"R-XTR-189488",
"R-BTA-189488",
"R-SPO-189488"
],
"rhea":[
"18966",
"18968",
"18965",
"18967"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02264"
]
}
},
{
"id":"VALTA",
"name":"Valine transaminase",
"metabolites":{
"3mob_c":1.0,
"akg_c":-1.0,
"glu__L_c":1.0,
"val__L_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3903",
"subsystem":"Valine Leucine and Isoleucine Metabolism",
"notes":{
"original_bigg_ids":[
"VALTA"
]
},
"annotation":{
"bigg.reaction":[
"VALTA"
],
"biocyc":[
"META:BRANCHED-CHAINAMINOTRANSFERVAL-RXN"
],
"ec-code":[
"2.6.1.42",
"2.6.1.6"
],
"kegg.reaction":[
"R01214"
],
"metanetx.reaction":[
"MNXR96230"
],
"rhea":[
"24813",
"24816",
"24814",
"24815"
],
"sabiork":[
"1446"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00903"
]
}
},
{
"id":"VALTRS",
"name":"Valyl-tRNA synthetase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"ppi_c":1.0,
"trnaval_c":-1.0,
"val__L_c":-1.0,
"valtrna_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4475",
"subsystem":"tRNA charging",
"notes":{
"original_bigg_ids":[
"VALTRS"
]
},
"annotation":{
"bigg.reaction":[
"VALTRS"
],
"ec-code":[
"6.1.1.9"
],
"kegg.reaction":[
"R03665"
],
"metanetx.reaction":[
"MNXR105186"
],
"reactome.reaction":[
"R-HSA-380042",
"R-HSA-380199"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn06449"
]
}
},
{
"id":"VALabcpp",
"name":"L-valine transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"val__L_c":1.0,
"val__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3560 and STM3561 and STM3563 and STM3567 and STM3562",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"VALabcpp"
]
},
"annotation":{
"bigg.reaction":[
"VALabcpp"
],
"biocyc":[
"META:ABC-36-RXN"
],
"metanetx.reaction":[
"MNXR105187"
],
"rhea":[
"29805#2",
"29803#2",
"29806#2",
"29804#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05168",
"rxn09373"
]
}
},
{
"id":"VALt2rpp",
"name":"L-valine reversible transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"val__L_c":1.0,
"val__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0399",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"VALt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"VALt2rpp"
],
"metanetx.reaction":[
"MNXR105188"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05669",
"rxn09707",
"rxn11190",
"rxn09374"
]
}
},
{
"id":"VALtex",
"name":"L-valine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"val__L_e":-1.0,
"val__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"VALtex"
]
},
"annotation":{
"bigg.reaction":[
"VALtex"
],
"biocyc":[
"META:TRANS-RXN0-269"
],
"metanetx.reaction":[
"MNXR105190"
],
"rhea":[
"29706",
"29703",
"29705",
"29704"
],
"sabiork":[
"13468"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05245",
"rxn09375"
]
}
},
{
"id":"UPPRT",
"name":"Uracil phosphoribosyltransferase",
"metabolites":{
"ppi_c":1.0,
"prpp_c":-1.0,
"ump_c":1.0,
"ura_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2498",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"UPPRT"
]
},
"annotation":{
"bigg.reaction":[
"UPPRT"
],
"biocyc":[
"META:URACIL-PRIBOSYLTRANS-RXN"
],
"ec-code":[
"2.4.2.9"
],
"kegg.reaction":[
"R00966"
],
"metanetx.reaction":[
"MNXR105142"
],
"rhea":[
"13018",
"13019",
"13020",
"13017"
],
"sabiork":[
"10227",
"86"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00711"
]
}
},
{
"id":"URAt2pp",
"name":"Uracil transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ura_c":1.0,
"ura_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2497",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"URAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"URAt2pp"
],
"biocyc":[
"META:TRANS-RXN-132"
],
"metanetx.reaction":[
"MNXR105148"
],
"rhea":[
"29242",
"29239",
"29241",
"29240"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09365",
"rxn05197"
]
}
},
{
"id":"SPMS",
"name":"Spermidine synthase",
"metabolites":{
"5mta_c":1.0,
"ametam_c":-1.0,
"h_c":1.0,
"ptrc_c":-1.0,
"spmd_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0166",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SPMS"
]
},
"annotation":{
"bigg.reaction":[
"SPMS"
],
"biocyc":[
"META:SPERMIDINESYN-RXN"
],
"ec-code":[
"2.5.1.16"
],
"kegg.reaction":[
"R01920"
],
"metanetx.reaction":[
"MNXR95860"
],
"rhea":[
"12724",
"12721",
"12722",
"12723"
],
"sabiork":[
"1974"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01406"
]
}
},
{
"id":"URAtex",
"name":"Uracil transport via diffusion (extracellular to periplasm)",
"metabolites":{
"ura_e":-1.0,
"ura_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"URAtex"
]
},
"annotation":{
"bigg.reaction":[
"URAtex"
],
"biocyc":[
"META:TRANS-RXN0-560"
],
"metanetx.reaction":[
"MNXR105147"
],
"rhea":[
"27320",
"28622",
"27319",
"27318"
],
"sabiork":[
"12300"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10993",
"rxn09366"
]
}
},
{
"id":"VPAMTr",
"name":"Valine-pyruvate aminotransferase",
"metabolites":{
"3mob_c":-1.0,
"ala__L_c":-1.0,
"pyr_c":1.0,
"val__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3665",
"subsystem":"Alanine and Aspartate Metabolism",
"notes":{
"original_bigg_ids":[
"VPAMT"
]
},
"annotation":{
"bigg.reaction":[
"VPAMTr"
],
"biocyc":[
"META:VALINE-PYRUVATE-AMINOTRANSFER-RXN"
],
"ec-code":[
"2.6.1.66"
],
"kegg.reaction":[
"R01215"
],
"metanetx.reaction":[
"MNXR105217"
],
"rhea":[
"22915",
"22914",
"22912",
"22913"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00904"
]
}
},
{
"id":"X5PL3E",
"name":"L-xylulose 5-phosphate 3-epimerase",
"metabolites":{
"ru5p__L_c":1.0,
"xu5p__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4387",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"X5PL3E"
]
},
"annotation":{
"bigg.reaction":[
"X5PL3E"
],
"biocyc":[
"META:LXULRU5P-RXN"
],
"ec-code":[
"5.-.-.-",
"5.1.3.22"
],
"kegg.reaction":[
"R03244"
],
"metanetx.reaction":[
"MNXR105224"
],
"rhea":[
"18498",
"18500",
"18499",
"18497"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02321"
]
}
},
{
"id":"SPODM",
"name":"Superoxide dismutase",
"metabolites":{
"h2o2_c":1.0,
"h_c":-2.0,
"o2_c":1.0,
"o2s_c":-2.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM4055 or STM1431",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"SPODM"
]
},
"annotation":{
"bigg.reaction":[
"SPODM"
],
"biocyc":[
"META:SUPEROX-DISMUT-RXN"
],
"ec-code":[
"1.15.1.1"
],
"kegg.reaction":[
"R00275"
],
"metanetx.reaction":[
"MNXR104498"
],
"rhea":[
"20696",
"20699",
"20698",
"20697"
],
"sbo":"SBO:0000176"
}
},
{
"id":"XANt2pp",
"name":"Xanthine transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"xan_c":1.0,
"xan_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3747",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"XANt2pp"
]
},
"annotation":{
"bigg.reaction":[
"XANt2pp"
],
"biocyc":[
"META:TRANS-RXN-206",
"META:RXN-5076"
],
"metanetx.reaction":[
"MNXR105227"
],
"rhea":[
"29663",
"29665",
"29666",
"29664"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09377",
"rxn05202"
]
}
},
{
"id":"SPODMpp",
"name":"Superoxide dismutase",
"metabolites":{
"h2o2_p":1.0,
"h_p":-2.0,
"o2_p":1.0,
"o2s_p":-2.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM1440 or STM1044",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"SPODMpp"
]
},
"annotation":{
"bigg.reaction":[
"SPODMpp"
],
"biocyc":[
"META:SUPEROX-DISMUT-RXN"
],
"ec-code":[
"1.15.1.1"
],
"kegg.reaction":[
"R00275"
],
"metanetx.reaction":[
"MNXR104498"
],
"rhea":[
"20696",
"20699",
"20698",
"20697"
],
"sbo":"SBO:0000176"
}
},
{
"id":"XANtex",
"name":"Xanthine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"xan_e":-1.0,
"xan_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"XANtex"
]
},
"annotation":{
"bigg.reaction":[
"XANtex"
],
"biocyc":[
"META:TRANS-RXN0-561"
],
"metanetx.reaction":[
"MNXR105226"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09379",
"rxn09652",
"rxn09378"
]
}
},
{
"id":"XANtpp",
"name":"Xanthine reversible transport (periplasm)",
"metabolites":{
"xan_c":1.0,
"xan_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"XANtpp"
]
},
"annotation":{
"bigg.reaction":[
"XANtpp"
],
"biocyc":[
"META:TRANS-RXN0-561"
],
"metanetx.reaction":[
"MNXR105226"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09379",
"rxn09652",
"rxn09378"
]
}
},
{
"id":"XMPtex",
"name":"XMP transport via diffusion (extracellular to periplasm)",
"metabolites":{
"xmp_e":-1.0,
"xmp_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"XMPtex"
]
},
"annotation":{
"bigg.reaction":[
"XMPtex"
],
"metanetx.reaction":[
"MNXR105231"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09380"
]
}
},
{
"id":"XPPT",
"name":"Xanthine phosphoribosyltransferase",
"metabolites":{
"ppi_c":1.0,
"prpp_c":-1.0,
"xan_c":-1.0,
"xmp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0317",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"XPPT"
]
},
"annotation":{
"bigg.reaction":[
"XPPT"
],
"biocyc":[
"META:XANPRIBOSYLTRAN-RXN"
],
"ec-code":[
"2.4.2.8",
"2.4.2.22"
],
"kegg.reaction":[
"R02142"
],
"metanetx.reaction":[
"MNXR105243"
],
"rhea":[
"10800",
"10803",
"10802",
"10801"
],
"sabiork":[
"194"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01544"
]
}
},
{
"id":"12PPDRDH",
"name":" R Propane 1 2 diol dehydratase",
"metabolites":{
"12ppd__R_c":-1.0,
"h2o_c":1.0,
"ppal_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2040 and STM2041 and STM2042 and STM2043 and STM2044",
"subsystem":"1 2 Propanediol Catabolism",
"notes":{
"original_bigg_ids":[
"12PPDRDH"
]
},
"annotation":{
"bigg.reaction":[
"12PPDRDH"
],
"metanetx.reaction":[
"MNXR94682"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SSALx",
"name":"Succinate-semialdehyde dehydrogenase (NAD)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0,
"succ_c":1.0,
"sucsal_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SSALx"
]
},
"annotation":{
"bigg.reaction":[
"SSALx"
],
"biocyc":[
"META:SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.2.1.16",
"1.2.1.24"
],
"kegg.reaction":[
"R00713"
],
"metanetx.reaction":[
"MNXR104540"
],
"reactome.reaction":[
"R-RNO-888548",
"R-CFA-888548",
"R-ATH-888548",
"R-SPO-888548",
"R-TGU-888548",
"R-GGA-888548",
"R-SCE-888548",
"R-DRE-888548",
"R-CEL-888548",
"R-MMU-888548",
"R-XTR-888548",
"R-BTA-888548",
"R-SSC-888548",
"R-HSA-888548",
"R-DME-888548"
],
"rhea":[
"13218",
"13219",
"13217",
"13220"
],
"sabiork":[
"1085"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00508"
]
}
},
{
"id":"PPDD",
"name":"Propanediol dehydratase",
"metabolites":{
"12ppd__S_c":-1.0,
"h2o_c":1.0,
"ppal_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2040 and STM2041 and STM2042 and STM2043 and STM2044",
"subsystem":"1 2 Propanediol Catabolism",
"notes":{
"original_bigg_ids":[
"12PPDSDH"
]
},
"annotation":{
"bigg.reaction":[
"PPDD"
],
"biocyc":[
"META:PROPANEDIOL-DEHYDRATASE-RXN"
],
"ec-code":[
"4.2.1.28"
],
"metanetx.reaction":[
"MNXR103104"
],
"sbo":"SBO:0000176"
}
},
{
"id":"XTSNH",
"name":"Xanthosine hydrolase",
"metabolites":{
"h2o_c":-1.0,
"rib__D_c":1.0,
"xan_c":1.0,
"xtsn_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0051",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"XTSNH"
]
},
"annotation":{
"bigg.reaction":[
"XTSNH"
],
"biocyc":[
"META:RXN0-363"
],
"ec-code":[
"3.2.2.1"
],
"kegg.reaction":[
"R02143"
],
"metanetx.reaction":[
"MNXR105245"
],
"rhea":[
"27994",
"27995",
"27997",
"27996"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01545"
]
}
},
{
"id":"XTSNt2rpp",
"name":"Xanthosine transport via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"xtsn_c":1.0,
"xtsn_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2421",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"XTSNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"XTSNt2rpp"
],
"biocyc":[
"META:TRANS-RXN-31"
],
"metanetx.reaction":[
"MNXR105246"
],
"rhea":[
"28940",
"28942",
"28941",
"28939"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09381",
"rxn05680"
]
}
},
{
"id":"XTSNtex",
"name":"Xanthosine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"xtsn_e":-1.0,
"xtsn_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"XTSNtex"
]
},
"annotation":{
"bigg.reaction":[
"XTSNtex"
],
"metanetx.reaction":[
"MNXR105247"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09382"
]
}
},
{
"id":"ALCD3ir",
"name":"Alcohol dehydrogenase Propanal ",
"metabolites":{
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"ppal_c":-1.0,
"ppoh_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2052",
"subsystem":"1 2 Propanediol Catabolism",
"notes":{
"original_bigg_ids":[
"ALCDPPAL"
]
},
"annotation":{
"bigg.reaction":[
"ALCD3ir"
],
"biocyc":[
"META:RXN-13198"
],
"ec-code":[
"1.1.1.202",
"1.1.1.21",
"1.1.1.2",
"1.1.1.1",
"1.1.1.51"
],
"kegg.reaction":[
"R02377"
],
"metanetx.reaction":[
"MNXR95727"
],
"sabiork":[
"2321"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01710"
]
}
},
{
"id":"SSALy",
"name":"Succinate-semialdehyde dehydrogenase (NADP)",
"metabolites":{
"h2o_c":-1.0,
"h_c":2.0,
"nadp_c":-1.0,
"nadph_c":1.0,
"succ_c":1.0,
"sucsal_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2791",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"SSALy"
]
},
"annotation":{
"bigg.reaction":[
"SSALy"
],
"biocyc":[
"META:SUCCSEMIALDDEHYDROG-RXN"
],
"ec-code":[
"1.2.1.79",
"1.2.1.16"
],
"kegg.reaction":[
"R00714"
],
"metanetx.reaction":[
"MNXR104541"
],
"rhea":[
"13216",
"13215",
"13214",
"13213"
],
"sabiork":[
"1086"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00509"
]
}
},
{
"id":"XYLI1",
"name":"Xylose isomerase",
"metabolites":{
"xyl__D_c":-1.0,
"xylu__D_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3661",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"XYLI1"
]
},
"annotation":{
"bigg.reaction":[
"XYLI1"
],
"biocyc":[
"META:XYLISOM-RXN"
],
"ec-code":[
"5.3.1.5"
],
"kegg.reaction":[
"R01432"
],
"metanetx.reaction":[
"MNXR105253"
],
"rhea":[
"22818",
"22816",
"22819",
"22817"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01044"
]
}
},
{
"id":"XYLI2",
"name":"Xylose isomerase",
"metabolites":{
"fru_c":1.0,
"glc__D_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3661",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"XYLI2"
]
},
"annotation":{
"bigg.reaction":[
"XYLI2"
],
"biocyc":[
"META:GLUCISOM-RXN"
],
"ec-code":[
"5.3.1.5"
],
"kegg.reaction":[
"R00307"
],
"metanetx.reaction":[
"MNXR105254"
],
"rhea":[
"28546",
"28547",
"28549",
"28548"
],
"sabiork":[
"800"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00223"
]
}
},
{
"id":"XYLK",
"name":"Xylulokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"xu5p__D_c":1.0,
"xylu__D_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3660 or STM0103",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"XYLK"
]
},
"annotation":{
"bigg.reaction":[
"XYLK"
],
"biocyc":[
"META:XYLULOKIN-RXN"
],
"ec-code":[
"2.7.1.17"
],
"kegg.reaction":[
"R01639"
],
"metanetx.reaction":[
"MNXR105255"
],
"reactome.reaction":[
"R-RNO-5662466",
"R-CEL-5662466",
"R-BTA-5662466",
"R-CFA-5662466",
"R-HSA-5662466",
"R-OSA-5662466",
"R-TGU-5662466",
"R-SPO-5662466",
"R-DRE-5662466",
"R-GGA-5662466",
"R-SSC-5662466",
"R-DME-5662466",
"R-XTR-5662466",
"R-SCE-5662466",
"R-ATH-5662466",
"R-MMU-5662466"
],
"rhea":[
"10966",
"10965",
"10964",
"10967"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01199"
]
}
},
{
"id":"XYLK2",
"name":"L-xylulokinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"xu5p__L_c":1.0,
"xylu__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0103 or STM3674",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"XYLK2"
]
},
"annotation":{
"bigg.reaction":[
"XYLK2"
],
"biocyc":[
"META:LYXK-RXN"
],
"ec-code":[
"2.7.1.53"
],
"kegg.reaction":[
"R01901"
],
"metanetx.reaction":[
"MNXR138925"
],
"rhea":[
"18871",
"18872",
"18869",
"18870"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01389"
]
}
},
{
"id":"XYLUt2pp",
"name":"L-xylulose transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"xylu__L_c":1.0,
"xylu__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3671 and STM3672 and STM3673",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"XYLUt2pp"
]
},
"annotation":{
"bigg.reaction":[
"XYLUt2pp"
],
"metanetx.reaction":[
"MNXR138930"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09386"
]
}
},
{
"id":"XYLUtex",
"name":"L-xylulose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"xylu__L_e":-1.0,
"xylu__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"XYLUtex"
]
},
"annotation":{
"bigg.reaction":[
"XYLUtex"
],
"metanetx.reaction":[
"MNXR138931"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09387"
]
}
},
{
"id":"XYLtex",
"name":"D-xylose transport via diffusion (extracellular to periplasm)",
"metabolites":{
"xyl__D_e":-1.0,
"xyl__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"XYLtex"
]
},
"annotation":{
"bigg.reaction":[
"XYLtex"
],
"metanetx.reaction":[
"MNXR105270"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09385",
"rxn09650"
]
}
},
{
"id":"MMSAD2",
"name":"Methylmalonate-semialdehyde dehydrogenase (propanol)",
"metabolites":{
"coa_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"ppal_c":-1.0,
"ppcoa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2051",
"subsystem":"1 2 Propanediol Catabolism",
"notes":{
"original_bigg_ids":[
"COAPPALDH"
]
},
"annotation":{
"bigg.reaction":[
"MMSAD2"
],
"biocyc":[
"META:RXN-12736"
],
"ec-code":[
"1.2.1.87"
],
"kegg.reaction":[
"R09097"
],
"metanetx.reaction":[
"MNXR101664"
],
"rhea":[
"36028",
"36027",
"36030",
"36029"
],
"sabiork":[
"10853"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09944"
]
}
},
{
"id":"DSCLCOCH",
"name":"Sirohydrochlorin cobaltochelatase",
"metabolites":{
"cobalt2_c":-1.0,
"copre2_c":1.0,
"dscl_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2025 or STM3477",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DSCLCOCH"
]
},
"annotation":{
"bigg.reaction":[
"DSCLCOCH"
],
"biocyc":[
"META:RXN-8759"
],
"ec-code":[
"4.99.1.3"
],
"metanetx.reaction":[
"MNXR97796"
],
"rhea":[
"26269",
"26270",
"26272",
"26271"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10600"
]
}
},
{
"id":"Cobalt2abcppI",
"name":"Cobalt II transport via ABC system periplasm I",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cobalt2_c":1.0,
"cobalt2_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2023 and STM2022 and STM2021 and STM2020",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"Cobalt2abcppI"
]
},
"annotation":{
"bigg.reaction":[
"Cobalt2abcppI"
],
"metanetx.reaction":[
"MNXR96862"
],
"rhea":[
"32779#1",
"32780#1",
"32781#1",
"32782#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05166"
]
}
},
{
"id":"COBALT2tpp_copy2",
"name":"Cobalt transport in via permease (no H+)",
"metabolites":{
"cobalt2_c":1.0,
"cobalt2_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2023 and STM2022",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"COBALT2tpp",
"Cobalt2abcppII"
]
},
"annotation":{
"bigg.reaction":[
"COBALT2tpp"
],
"biocyc":[
"META:TRANS-RXN-141A"
],
"metanetx.reaction":[
"MNXR96821"
],
"rhea":[
"28579",
"28580",
"28581",
"28578"
],
"sabiork":[
"12148"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08241",
"rxn08242",
"rxn10474"
]
}
},
{
"id":"XYLt2pp",
"name":"D-xylose transport in via proton symport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"xyl__D_c":1.0,
"xyl__D_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0042",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"XYLt2pp"
]
},
"annotation":{
"bigg.reaction":[
"XYLt2pp"
],
"metanetx.reaction":[
"MNXR105271"
],
"rhea":[
"28959",
"28960",
"28962",
"28961"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05671",
"rxn09384"
]
}
},
{
"id":"ZN2abcpp",
"name":"Zinc (Zn+2) ABC transporter, efflux (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"zn2_c":-1.0,
"zn2_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3576",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ZN2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"ZN2abcpp"
],
"biocyc":[
"META:RXN0-5205"
],
"ec-code":[
"3.6.3.5"
],
"metanetx.reaction":[
"MNXR105277"
],
"rhea":[
"20622",
"20624",
"20623",
"20621"
],
"sabiork":[
"13430#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13918",
"rxn09388"
]
}
},
{
"id":"CPC2MT",
"name":"Precorrin-2 C20-methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"copre2_c":-1.0,
"copre3_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2024",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL2MT"
]
},
"annotation":{
"bigg.reaction":[
"CPC2MT"
],
"biocyc":[
"META:RXN-8760"
],
"ec-code":[
"2.1.1.151"
],
"metanetx.reaction":[
"MNXR96832"
],
"rhea":[
"17997",
"17999",
"17998",
"18000"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04046"
]
}
},
{
"id":"SUCBZL",
"name":"O-succinylbenzoate-CoA ligase",
"metabolites":{
"amp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"ppi_c":1.0,
"sbzcoa_c":1.0,
"sucbz_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2305",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"SUCBZL"
]
},
"annotation":{
"bigg.reaction":[
"SUCBZL"
],
"biocyc":[
"META:O-SUCCINYLBENZOATE-COA-LIG-RXN"
],
"ec-code":[
"6.2.1.26"
],
"kegg.reaction":[
"R04030"
],
"metanetx.reaction":[
"MNXR104612"
],
"rhea":[
"17012",
"17011",
"17009",
"17010"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02831"
]
}
},
{
"id":"CPC3MT",
"name":"Precorrin-3B C17-methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"copre3_c":-1.0,
"copre4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2027",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL3MT"
]
},
"annotation":{
"bigg.reaction":[
"CPC3MT"
],
"biocyc":[
"META:RXN-8761"
],
"ec-code":[
"2.1.1.131"
],
"kegg.reaction":[
"R05809"
],
"metanetx.reaction":[
"MNXR96833"
],
"rhea":[
"26274",
"26273",
"26276",
"26275"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04047"
]
}
},
{
"id":"CODSCL4MT",
"name":"Cobalt precorrin 4 methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"codscl5a_c":1.0,
"copre4_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2029",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL4MT"
]
},
"annotation":{
"bigg.reaction":[
"CODSCL4MT"
],
"biocyc":[
"META:RXN-8762"
],
"ec-code":[
"2.1.1.271"
],
"kegg.reaction":[
"R05810"
],
"metanetx.reaction":[
"MNXR96834"
],
"rhea":[
"26277",
"26278",
"26280",
"26279"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CODSCL5DA",
"name":"Cobalt precorrin 5a deacetylation",
"metabolites":{
"acald_c":1.0,
"codscl5a_c":-1.0,
"codscl5b_c":1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2028",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL5DA"
]
},
"annotation":{
"bigg.reaction":[
"CODSCL5DA"
],
"biocyc":[
"META:RXN-8763"
],
"ec-code":[
"3.7.1.12"
],
"kegg.reaction":[
"R07772"
],
"metanetx.reaction":[
"MNXR96836"
],
"rhea":[
"26282",
"26281",
"26284",
"26283"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CODSCL5BMT",
"name":"Cobalt precorrin 5b methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"codscl5b_c":-1.0,
"copre6_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2032",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL5BMT"
]
},
"annotation":{
"bigg.reaction":[
"CODSCL5BMT"
],
"ec-code":[
"2.1.1.195"
],
"kegg.reaction":[
"R07773"
],
"metanetx.reaction":[
"MNXR96835"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07587"
]
}
},
{
"id":"ZN2t3pp",
"name":"Zinc (Zn+2) transport out via proton antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"zn2_c":-1.0,
"zn2_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0758 or STM4061",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ZN2t3pp"
]
},
"annotation":{
"bigg.reaction":[
"ZN2t3pp"
],
"biocyc":[
"META:TRANS-RXN0-200"
],
"metanetx.reaction":[
"MNXR105278"
],
"rhea":[
"28842",
"28840",
"28841",
"28839"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13919",
"rxn09389"
]
}
},
{
"id":"ZN2tpp",
"name":"Zinc transport in via permease (no H+)",
"metabolites":{
"zn2_c":1.0,
"zn2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3190",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ZN2tpp"
]
},
"annotation":{
"bigg.reaction":[
"ZN2tpp"
],
"biocyc":[
"META:RXN0-12"
],
"metanetx.reaction":[
"MNXR105280"
],
"reactome.reaction":[
"R-RNO-442359",
"R-TGU-437085",
"R-TGU-437139",
"R-DRE-442393",
"R-HSA-437084",
"R-PFA-437136",
"R-CFA-442422",
"R-BTA-437139",
"R-SSC-442393",
"R-HSA-437129",
"R-XTR-435366",
"R-RNO-442422",
"R-RNO-437136",
"R-SCE-437085",
"R-DME-442422",
"R-DDI-442422",
"R-MMU-435366",
"R-RNO-442317",
"R-DDI-437136",
"R-CEL-442393",
"R-SSC-437139",
"R-CEL-442422",
"R-ATH-437085",
"R-MMU-437136",
"R-MMU-442317",
"R-DRE-442422",
"R-MMU-437139",
"R-SPO-435366",
"R-DME-437136",
"R-OSA-442393",
"R-XTR-437085",
"R-OSA-442422",
"R-CEL-435366",
"R-DRE-442317",
"R-BTA-442317",
"R-DDI-435366",
"R-SSC-442422",
"R-HSA-442387",
"R-HSA-437139",
"R-SCE-435366",
"R-MMU-437085",
"R-ATH-442422",
"R-HSA-442405",
"R-GGA-435366",
"R-CEL-442317",
"R-SSC-442317",
"R-DRE-442387",
"R-DRE-437085",
"R-MMU-437092",
"R-SCE-442422",
"R-CFA-442393",
"R-BTA-442393",
"R-SSC-437136",
"R-TGU-442422",
"R-BTA-442387",
"R-OSA-437085",
"R-RNO-442393",
"R-SCE-442393",
"R-RNO-437139",
"R-SSC-437085",
"R-XTR-442317",
"R-XTR-442393",
"R-GGA-437136",
"R-SCE-437136",
"R-XTR-437136",
"R-HSA-437085",
"R-ATH-442393",
"R-XTR-437139",
"R-BTA-437085",
"R-GGA-442317",
"R-GGA-437085",
"R-CEL-442387",
"R-SSC-435366",
"R-TGU-442387",
"R-SCE-437139",
"R-CEL-437136",
"R-MMU-442387",
"R-MMU-442422",
"R-BTA-442422",
"R-RNO-435366",
"R-RNO-442387",
"R-CFA-437085",
"R-DME-442317",
"R-HSA-435366",
"R-DRE-437139",
"R-TGU-437136",
"R-TGU-435366",
"R-SCE-442387",
"R-HSA-442422",
"R-ATH-437136",
"R-HSA-442317",
"R-HSA-442393",
"R-CEL-437139",
"R-HSA-442345",
"R-GGA-442387",
"R-CFA-442317",
"R-GGA-442422",
"R-DRE-437136",
"R-MMU-442319",
"R-MMU-442393",
"R-GGA-437139",
"R-OSA-437136",
"R-BTA-435366",
"R-CEL-437085",
"R-XTR-442387",
"R-SSC-442387",
"R-DRE-435366",
"R-DDI-437085",
"R-MMU-437145",
"R-CFA-442387",
"R-SPO-442393",
"R-TGU-442317",
"R-DME-442393",
"R-XTR-442422",
"R-SCE-442317",
"R-SPO-437085",
"R-CFA-435366",
"R-RNO-437085",
"R-CFA-437139",
"R-HSA-435375",
"R-RNO-437094",
"R-CFA-437136",
"R-HSA-437136",
"R-DME-435366"
],
"rhea":[
"29353",
"29351",
"29352",
"29354"
],
"sabiork":[
"13042"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09391",
"rxn09390"
]
}
},
{
"id":"ZNabcpp",
"name":"Zinc (Zn+2) transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"zn2_c":1.0,
"zn2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1891 and STM1893 and STM1892_S",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ZNabcpp"
]
},
"annotation":{
"bigg.reaction":[
"ZNabcpp"
],
"biocyc":[
"META:ABC-63-RXN"
],
"ec-code":[
"3.6.3.5"
],
"metanetx.reaction":[
"MNXR105281"
],
"rhea":[
"29796",
"29798",
"29797",
"29795"
],
"sabiork":[
"13430#2"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05150",
"rxn09392"
]
}
},
{
"id":"Zn2tex",
"name":"Zinc (Zn+2) transport via diffusion (extracellular to periplasm)",
"metabolites":{
"zn2_e":-1.0,
"zn2_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"Zn2tex"
]
},
"annotation":{
"bigg.reaction":[
"Zn2tex"
],
"biocyc":[
"META:RXN0-12"
],
"metanetx.reaction":[
"MNXR105280"
],
"reactome.reaction":[
"R-RNO-442359",
"R-TGU-437085",
"R-TGU-437139",
"R-DRE-442393",
"R-HSA-437084",
"R-PFA-437136",
"R-CFA-442422",
"R-BTA-437139",
"R-SSC-442393",
"R-HSA-437129",
"R-XTR-435366",
"R-RNO-442422",
"R-RNO-437136",
"R-SCE-437085",
"R-DME-442422",
"R-DDI-442422",
"R-MMU-435366",
"R-RNO-442317",
"R-DDI-437136",
"R-CEL-442393",
"R-SSC-437139",
"R-CEL-442422",
"R-ATH-437085",
"R-MMU-437136",
"R-MMU-442317",
"R-DRE-442422",
"R-MMU-437139",
"R-SPO-435366",
"R-DME-437136",
"R-OSA-442393",
"R-XTR-437085",
"R-OSA-442422",
"R-CEL-435366",
"R-DRE-442317",
"R-BTA-442317",
"R-DDI-435366",
"R-SSC-442422",
"R-HSA-442387",
"R-HSA-437139",
"R-SCE-435366",
"R-MMU-437085",
"R-ATH-442422",
"R-HSA-442405",
"R-GGA-435366",
"R-CEL-442317",
"R-SSC-442317",
"R-DRE-442387",
"R-DRE-437085",
"R-MMU-437092",
"R-SCE-442422",
"R-CFA-442393",
"R-BTA-442393",
"R-SSC-437136",
"R-TGU-442422",
"R-BTA-442387",
"R-OSA-437085",
"R-RNO-442393",
"R-SCE-442393",
"R-RNO-437139",
"R-SSC-437085",
"R-XTR-442317",
"R-XTR-442393",
"R-GGA-437136",
"R-SCE-437136",
"R-XTR-437136",
"R-HSA-437085",
"R-ATH-442393",
"R-XTR-437139",
"R-BTA-437085",
"R-GGA-442317",
"R-GGA-437085",
"R-CEL-442387",
"R-SSC-435366",
"R-TGU-442387",
"R-SCE-437139",
"R-CEL-437136",
"R-MMU-442387",
"R-MMU-442422",
"R-BTA-442422",
"R-RNO-435366",
"R-RNO-442387",
"R-CFA-437085",
"R-DME-442317",
"R-HSA-435366",
"R-DRE-437139",
"R-TGU-437136",
"R-TGU-435366",
"R-SCE-442387",
"R-HSA-442422",
"R-ATH-437136",
"R-HSA-442317",
"R-HSA-442393",
"R-CEL-437139",
"R-HSA-442345",
"R-GGA-442387",
"R-CFA-442317",
"R-GGA-442422",
"R-DRE-437136",
"R-MMU-442319",
"R-MMU-442393",
"R-GGA-437139",
"R-OSA-437136",
"R-BTA-435366",
"R-CEL-437085",
"R-XTR-442387",
"R-SSC-442387",
"R-DRE-435366",
"R-DDI-437085",
"R-MMU-437145",
"R-CFA-442387",
"R-SPO-442393",
"R-TGU-442317",
"R-DME-442393",
"R-XTR-442422",
"R-SCE-442317",
"R-SPO-437085",
"R-CFA-435366",
"R-RNO-437085",
"R-CFA-437139",
"R-HSA-435375",
"R-RNO-437094",
"R-CFA-437136",
"R-HSA-437136",
"R-DME-435366"
],
"rhea":[
"29353",
"29351",
"29352",
"29354"
],
"sabiork":[
"13042"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09391",
"rxn09390"
]
}
},
{
"id":"GCALDD",
"name":"Glycolaldehyde dehydrogenase",
"metabolites":{
"gcald_c":-1.0,
"glyclt_c":1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Folate Metabolism",
"notes":{
"original_bigg_ids":[
"GCALDD"
]
},
"annotation":{
"bigg.reaction":[
"GCALDD"
],
"biocyc":[
"META:GLYCOLALD-DEHYDROG-RXN"
],
"ec-code":[
"1.2.1.21"
],
"kegg.reaction":[
"R01333"
],
"metanetx.reaction":[
"MNXR100060"
],
"rhea":[
"20004",
"20002",
"20001",
"20003"
],
"sabiork":[
"434"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00979"
]
}
},
{
"id":"THZPSN",
"name":"Thiazole phosphate synthesis",
"metabolites":{
"4hba_c":1.0,
"4mpetz_c":1.0,
"ala__L_c":1.0,
"amp_c":1.0,
"atp_c":-1.0,
"co2_c":1.0,
"cys__L_c":-1.0,
"dxyl5p_c":-1.0,
"h2o_c":1.0,
"h_c":1.0,
"ppi_c":1.0,
"tyr__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2543 and STM4162 and (STM4159 and STM4160) and STM0425 and STM4161",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"THZPSN"
]
},
"annotation":{
"bigg.reaction":[
"THZPSN"
],
"metanetx.reaction":[
"MNXR104858"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09310"
]
}
},
{
"id":"CPC6R",
"name":"Precorrin-6A reductase",
"metabolites":{
"codhpre6_c":1.0,
"copre6_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2026",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL6ARED"
]
},
"annotation":{
"bigg.reaction":[
"CPC6R"
],
"ec-code":[
"1.3.1.54"
],
"metanetx.reaction":[
"MNXR96837"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04050"
]
}
},
{
"id":"CODSCL6BMT",
"name":"Cobalt precorrin 6b methyltransferase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"codhpre6_c":-1.0,
"codscl7_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2031",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL6BMT"
]
},
"annotation":{
"bigg.reaction":[
"CODSCL6BMT"
],
"metanetx.reaction":[
"MNXR96838"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07588"
]
}
},
{
"id":"SUCBZS",
"name":"O-succinylbenzoate-CoA synthase",
"metabolites":{
"2shchc_c":-1.0,
"h2o_c":1.0,
"sucbz_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2306",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"SUCBZS"
]
},
"annotation":{
"bigg.reaction":[
"SUCBZS"
],
"biocyc":[
"META:O-SUCCINYLBENZOATE-COA-SYN-RXN"
],
"ec-code":[
"4.2.1.113"
],
"kegg.reaction":[
"R04031"
],
"metanetx.reaction":[
"MNXR108605"
],
"rhea":[
"10196",
"10199",
"10198",
"10197"
],
"sabiork":[
"3766"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02832"
]
}
},
{
"id":"CODSCL7MTDC",
"name":"Cobalt precorrin 7 methyltransferase decarboxylase",
"metabolites":{
"ahcys_c":1.0,
"amet_c":-1.0,
"co2_c":1.0,
"codscl7_c":-1.0,
"codscl8x_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2030",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL7MTDC"
]
},
"annotation":{
"bigg.reaction":[
"CODSCL7MTDC"
],
"metanetx.reaction":[
"MNXR96839"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07589"
]
}
},
{
"id":"CODSCL8XI",
"name":"Cobalt precorrin 8x isomerase",
"metabolites":{
"cobya_c":1.0,
"codscl8x_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2033",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CODSCL8XI"
]
},
"annotation":{
"bigg.reaction":[
"CODSCL8XI"
],
"biocyc":[
"META:RXN-8768"
],
"ec-code":[
"5.4.99.60"
],
"kegg.reaction":[
"R05814"
],
"metanetx.reaction":[
"MNXR96840"
],
"rhea":[
"16210",
"16212",
"16211",
"16209"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_AEP_e",
"name":"AEP exchange",
"metabolites":{
"2ameph_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_AEP_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_AEP_e"
],
"metanetx.reaction":[
"MNXR95499"
],
"sbo":"SBO:0000627"
}
},
{
"id":"COBNAD",
"name":"Cobyrinate amidation",
"metabolites":{
"adp_c":2.0,
"atp_c":-2.0,
"cob2nda_c":1.0,
"cobya_c":-1.0,
"gln__L_c":-2.0,
"glu__L_c":2.0,
"h2o_c":-2.0,
"h_c":2.0,
"pi_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2035",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"COBNAD"
]
},
"annotation":{
"bigg.reaction":[
"COBNAD"
],
"metanetx.reaction":[
"MNXR96823"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SUCCt2_2pp",
"name":"Succinate transport via proton symport (2 H) (periplasm)",
"metabolites":{
"h_c":2.0,
"h_p":-2.0,
"succ_c":1.0,
"succ_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3614",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SUCCt2_2pp"
]
},
"annotation":{
"bigg.reaction":[
"SUCCt2_2pp"
],
"biocyc":[
"META:TRANS-RXN-121"
],
"metanetx.reaction":[
"MNXR104620"
],
"rhea":[
"29305",
"29306",
"29304",
"29303"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10154",
"rxn09269"
]
}
},
{
"id":"COB2NDARED",
"name":"Cob II yrinate a c diamide reductase",
"metabolites":{
"cob1nda_c":2.0,
"cob2nda_c":-2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"COB2NDARED"
]
},
"annotation":{
"bigg.reaction":[
"COB2NDARED"
],
"metanetx.reaction":[
"MNXR96818"
],
"sbo":"SBO:0000176"
}
},
{
"id":"COB1NDAAT1",
"name":"Cob I yrinate a c diamide adenosyltransferase 1",
"metabolites":{
"adcob1nda_c":1.0,
"atp_c":-1.0,
"cob1nda_c":-1.0,
"h_c":-1.0,
"pppi_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2050 or STM1718",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"COB1NDAAT1"
]
},
"annotation":{
"bigg.reaction":[
"COB1NDAAT1"
],
"metanetx.reaction":[
"MNXR96816"
],
"sbo":"SBO:0000176"
}
},
{
"id":"COB1NDAAT2",
"name":"Cob I yrinate a c diamide adenosyltransferase 2",
"metabolites":{
"adcob1nda_c":1.0,
"atp_c":-1.0,
"cob1nda_c":-1.0,
"h2o_c":-1.0,
"pi_c":1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2467",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"COB1NDAAT2"
]
},
"annotation":{
"bigg.reaction":[
"COB1NDAAT2"
],
"metanetx.reaction":[
"MNXR96817"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ADCOBNSYN",
"name":"Adenosylcobyric acid synthase",
"metabolites":{
"adcob1nda_c":-1.0,
"adcobn_c":1.0,
"adp_c":4.0,
"atp_c":-4.0,
"gln__L_c":-4.0,
"glu__L_c":4.0,
"h2o_c":-4.0,
"h_c":4.0,
"pi_c":4.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2019",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADCOBNSYN"
]
},
"annotation":{
"bigg.reaction":[
"ADCOBNSYN"
],
"metanetx.reaction":[
"MNXR95437"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AEPtex",
"name":"AEP transport via diffusion extracellular to periplasm ",
"metabolites":{
"2ameph_e":-1.0,
"2ameph_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"AEPtex"
]
},
"annotation":{
"bigg.reaction":[
"AEPtex"
],
"metanetx.reaction":[
"MNXR95499"
],
"sbo":"SBO:0000185"
}
},
{
"id":"AEPabcpp",
"name":"AEP transport via ABC system periplasm ",
"metabolites":{
"2ameph_c":1.0,
"2ameph_p":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0426 and STM0427 and STM0429 and STM0428",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"AEPabcpp"
]
},
"annotation":{
"bigg.reaction":[
"AEPabcpp"
],
"metanetx.reaction":[
"MNXR95498"
],
"rhea":[
"32777#1",
"32776#1",
"32775#1",
"32778#1"
],
"sbo":"SBO:0000185"
}
},
{
"id":"AEPPYRTA",
"name":"2 aminoethylphosphonate pyruvate transaminase",
"metabolites":{
"2ameph_c":-1.0,
"Pald_c":1.0,
"ala__L_c":1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0431",
"subsystem":"aminophosphonate metabolism",
"notes":{
"original_bigg_ids":[
"AEPPYRTA"
]
},
"annotation":{
"bigg.reaction":[
"AEPPYRTA"
],
"biocyc":[
"META:2.6.1.37-RXN"
],
"ec-code":[
"2.6.1.37"
],
"kegg.reaction":[
"R04152"
],
"metanetx.reaction":[
"MNXR95497"
],
"rhea":[
"17021",
"17022",
"17024",
"17023"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02900"
]
}
},
{
"id":"PALDH",
"name":"Phosphonoacetaldehyde hydrolase",
"metabolites":{
"Pald_c":-1.0,
"acald_c":1.0,
"h2o_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0432",
"subsystem":"aminophosphonate metabolism",
"notes":{
"original_bigg_ids":[
"PALDH"
]
},
"annotation":{
"bigg.reaction":[
"PALDH"
],
"biocyc":[
"META:PHOSPHONOACETALDEHYDE-HYDROLASE-RXN"
],
"ec-code":[
"3.11.1.1"
],
"kegg.reaction":[
"R00747"
],
"metanetx.reaction":[
"MNXR102340"
],
"rhea":[
"18905",
"18906",
"18908",
"18907"
],
"sabiork":[
"1106"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00537"
]
}
},
{
"id":"LTHRK",
"name":"L threonine kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"thr__L_c":-1.0,
"thrp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2058",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"LTHRK"
]
},
"annotation":{
"bigg.reaction":[
"LTHRK"
],
"biocyc":[
"META:RXN-8626"
],
"ec-code":[
"2.7.1.177"
],
"kegg.reaction":[
"R06531"
],
"metanetx.reaction":[
"MNXR101251"
],
"rhea":[
"33709",
"33707",
"33708",
"33710"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn10609"
]
}
},
{
"id":"THRPDC",
"name":"L threonine phosphate decarboxylase",
"metabolites":{
"applp_c":1.0,
"co2_c":1.0,
"h_c":-1.0,
"thrp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0644",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"THRPDC"
]
},
"annotation":{
"bigg.reaction":[
"THRPDC"
],
"biocyc":[
"META:4.1.1.81-RXN"
],
"ec-code":[
"4.1.1.81"
],
"kegg.reaction":[
"R06530"
],
"metanetx.reaction":[
"MNXR104843"
],
"rhea":[
"11495",
"11492",
"11494",
"11493"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn04385"
]
}
},
{
"id":"EX_4hoxpac_e",
"name":"4 hydroxy phenylacetic acid exhcnage",
"metabolites":{
"4hoxpac_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4hoxpac_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4hoxpac_e"
],
"metanetx.reaction":[
"MNXR137954"
],
"rhea":[
"33178",
"33175",
"33177",
"33176"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ADOCBIPS",
"name":"Adenosyl cobinamide phosphate synthase",
"metabolites":{
"adcobn_c":-1.0,
"adocbip_c":1.0,
"adp_c":1.0,
"applp_c":-1.0,
"atp_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2034",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADOCBIPS"
]
},
"annotation":{
"bigg.reaction":[
"ADOCBIPS"
],
"metanetx.reaction":[
"MNXR95466"
],
"sbo":"SBO:0000176"
}
},
{
"id":"4hoxpactex",
"name":"4 hydroxyphenylacetate transport via diffusion extracellular to periplasm ",
"metabolites":{
"4hoxpac_e":-1.0,
"4hoxpac_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"4hoxpactex"
]
},
"annotation":{
"bigg.reaction":[
"4hoxpactex"
],
"metanetx.reaction":[
"MNXR137954"
],
"rhea":[
"33178",
"33175",
"33177",
"33176"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SUCCt3pp",
"name":"Succinate transport out via proton antiport (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"succ_c":-1.0,
"succ_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SUCCt3pp"
]
},
"annotation":{
"bigg.reaction":[
"SUCCt3pp"
],
"metanetx.reaction":[
"MNXR104623"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09270"
]
}
},
{
"id":"4HOXPACt2pp_1",
"name":"4 hydroxyphenylacetate transport in via proton symport periplasm ",
"metabolites":{
"4hoxpac_c":1.0,
"4hoxpac_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1107",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"4HOXPACt2pp"
]
},
"annotation":{
"bigg.reaction":[
"4HOXPACt2pp_1"
],
"metanetx.reaction":[
"MNXR137948"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10559"
]
}
},
{
"id":"ADOCBLPS",
"name":"Adenosylcobalamin phosphate synthase",
"metabolites":{
"5prdmbz_c":-1.0,
"adocblp_c":1.0,
"agdpcbi_c":-1.0,
"gmp_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2017",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADOCBLPS"
]
},
"annotation":{
"bigg.reaction":[
"ADOCBLPS"
],
"metanetx.reaction":[
"MNXR95468"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ADOCBLPP",
"name":"Adenosylcobalamin phosphate phosphatase",
"metabolites":{
"adocbl_c":1.0,
"adocblp_c":-1.0,
"h2o_p":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0643",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADOCBLPP"
]
},
"annotation":{
"bigg.reaction":[
"ADOCBLPP"
],
"metanetx.reaction":[
"MNXR95467"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FADRx_copy2",
"name":"FAD reductase",
"metabolites":{
"fad_c":-1.0,
"fadh2_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1098",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"FADRx",
"FLAVNADR"
]
},
"annotation":{
"bigg.reaction":[
"FADRx"
],
"biocyc":[
"META:RXN-8506"
],
"ec-code":[
"1.5.1.37",
"1.5.1.36",
"1.5.1.45"
],
"kegg.reaction":[
"R09748"
],
"metanetx.reaction":[
"MNXR99215"
],
"rhea":[
"30150",
"30149",
"30147",
"30148"
],
"sabiork":[
"7290"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08458"
]
}
},
{
"id":"ADOCBIK",
"name":"Adenosyl cobinamide kinase",
"metabolites":{
"adocbi_c":-1.0,
"adocbip_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2018 or STM1208",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"ADOCBIK"
]
},
"annotation":{
"bigg.reaction":[
"ADOCBIK"
],
"biocyc":[
"META:COBINAMIDEKIN-RXN"
],
"ec-code":[
"2.7.1.156"
],
"kegg.reaction":[
"R05221"
],
"metanetx.reaction":[
"MNXR95465"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03536"
]
}
},
{
"id":"SUCCtex",
"name":"Succinate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"succ_e":-1.0,
"succ_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SUCCtex"
]
},
"annotation":{
"bigg.reaction":[
"SUCCtex"
],
"biocyc":[
"META:TRANS-RXN0-552"
],
"metanetx.reaction":[
"MNXR104619"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10952",
"rxn09271"
]
}
},
{
"id":"4HOXPACMON",
"name":"4 hydroxyphenylacetate 3 monooxygenase nadh",
"metabolites":{
"34dhpacet_c":1.0,
"4hoxpac_c":-1.0,
"h2o_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0,
"o2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1098 or STM1099",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"4HOXPACMON"
]
},
"annotation":{
"bigg.reaction":[
"4HOXPACMON"
],
"ec-code":[
"1.14.14.9"
],
"kegg.reaction":[
"R02698"
],
"metanetx.reaction":[
"MNXR137947"
],
"rhea":[
"16683",
"16684",
"16682",
"16681"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01945"
]
}
},
{
"id":"4HOXPACMOF_1",
"name":"4 hydroxyphenylacetate 3 monooxygenase FADH2",
"metabolites":{
"34dhpacet_c":1.0,
"4hoxpac_c":-1.0,
"fad_c":1.0,
"fadh2_c":-1.0,
"h2o_c":1.0,
"o2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1099",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"4HOXPACMOF"
]
},
"annotation":{
"bigg.reaction":[
"4HOXPACMOF_1"
],
"biocyc":[
"META:RXN-8505"
],
"ec-code":[
"1.14.14.9"
],
"metanetx.reaction":[
"MNXR137946"
],
"rhea":[
"30596",
"30595",
"30598",
"30597"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CBLAT",
"name":"Cob(I)alamin adenosyltransferase",
"metabolites":{
"adocbl_c":1.0,
"atp_c":-1.0,
"cbl1_c":-1.0,
"h_c":-1.0,
"pppi_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1718 or STM2050 or STM2467",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"CBLAT"
]
},
"annotation":{
"bigg.reaction":[
"CBLAT"
],
"biocyc":[
"META:COBALADENOSYLTRANS-RXN"
],
"ec-code":[
"2.5.1.17"
],
"kegg.reaction":[
"R01492"
],
"metanetx.reaction":[
"MNXR96476"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APPK",
"name":"1 amino 2 propanol kinase",
"metabolites":{
"adp_c":1.0,
"app_c":-1.0,
"applp_c":1.0,
"atp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"APPK"
]
},
"annotation":{
"bigg.reaction":[
"APPK"
],
"metanetx.reaction":[
"MNXR95893"
],
"sbo":"SBO:0000176"
}
},
{
"id":"34DHPACDO",
"name":"3 4 dihydroxyphenylacetate 2 3 dioxygenase",
"metabolites":{
"34dhpacet_c":-1.0,
"5cmhmsa_c":1.0,
"h_c":1.0,
"o2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1103",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"34DHPACDO"
]
},
"annotation":{
"bigg.reaction":[
"34DHPACDO"
],
"biocyc":[
"META:1.13.11.15-RXN"
],
"ec-code":[
"1.13.11.15"
],
"kegg.reaction":[
"R03303"
],
"metanetx.reaction":[
"MNXR94835"
],
"rhea":[
"15635",
"15633",
"15634",
"15636"
],
"sabiork":[
"3120"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02366"
]
}
},
{
"id":"SUCDi",
"name":"Succinate dehydrogenase (irreversible)",
"metabolites":{
"fum_c":1.0,
"q8_c":-1.0,
"q8h2_c":1.0,
"succ_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0732 and STM0733 and STM0734 and STM0735",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"SUCDi"
]
},
"annotation":{
"bigg.reaction":[
"SUCDi"
],
"metanetx.reaction":[
"MNXR99641"
],
"rhea":[
"29190",
"29189",
"29187",
"29188"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn09272"
]
}
},
{
"id":"CMCMSAD",
"name":"4 carboxy 2 hydroxymuconate 6 semialdehyde dehydrogenase",
"metabolites":{
"5cmhm_c":1.0,
"5cmhmsa_c":-1.0,
"h2o_c":-1.0,
"h_c":2.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1102",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"4C2HM6SADH"
]
},
"annotation":{
"bigg.reaction":[
"CMCMSAD"
],
"biocyc":[
"META:CHMS-DEHYDROGENASE-RXN"
],
"ec-code":[
"1.1.1.312",
"1.2.1.60"
],
"kegg.reaction":[
"R04418"
],
"metanetx.reaction":[
"MNXR94997"
],
"rhea":[
"15682",
"15681",
"15683",
"15684"
],
"sabiork":[
"4105"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03055"
]
}
},
{
"id":"EX_remnant1_e",
"name":"Residual atoms of reaction DMBZIDSYN exchange",
"metabolites":{
"remnant1_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_remnant1_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_remnant1_e"
],
"metanetx.reaction":[
"MNXR103992"
],
"sbo":"SBO:0000627"
}
},
{
"id":"REMNANT1tex",
"name":"Residual atoms of reaction DMBZIDSYN transport via diffusion extracellular to periplasm ",
"metabolites":{
"remnant1_e":-1.0,
"remnant1_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"REMNANT1tex"
]
},
"annotation":{
"bigg.reaction":[
"REMNANT1tex"
],
"metanetx.reaction":[
"MNXR103992"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CMHMI",
"name":"5 carboxymethyl 2 hydroxymuconate delta isomerase",
"metabolites":{
"5cmhm_c":-1.0,
"5cohe_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1104",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"5CM2HMUDI"
]
},
"annotation":{
"bigg.reaction":[
"CMHMI"
],
"ec-code":[
"5.3.3.10"
],
"kegg.reaction":[
"R04379"
],
"metanetx.reaction":[
"MNXR142618"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03040"
]
}
},
{
"id":"SUCOAS",
"name":"Succinyl-CoA synthetase (ADP-forming)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"coa_c":-1.0,
"pi_c":1.0,
"succ_c":-1.0,
"succoa_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0738 and STM0739",
"subsystem":"Citric Acid Cycle",
"notes":{
"original_bigg_ids":[
"SUCOAS"
]
},
"annotation":{
"bigg.reaction":[
"SUCOAS"
],
"biocyc":[
"META:SUCCCOASYN-RXN"
],
"ec-code":[
"6.2.1.5"
],
"kegg.reaction":[
"R00405"
],
"metanetx.reaction":[
"MNXR104635"
],
"reactome.reaction":[
"R-BTA-70997",
"R-GGA-372977",
"R-PFA-70997",
"R-GGA-373134",
"R-TGU-70997",
"R-XTR-70997",
"R-SSC-70997",
"R-HSA-70997",
"R-DRE-70997",
"R-SCE-70997",
"R-SPO-70997",
"R-DDI-70997",
"R-CFA-70997",
"R-OSA-70997",
"R-GGA-70997",
"R-RNO-70997",
"R-ATH-70997",
"R-MMU-70997"
],
"rhea":[
"17664",
"17663",
"17662",
"17661"
],
"sabiork":[
"260"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00285"
]
}
},
{
"id":"OPTCCL",
"name":"5 carboxy 2 oxohept 3 enedioate decarboxylation",
"metabolites":{
"2hh24dd_c":1.0,
"5cohe_c":-1.0,
"co2_c":1.0,
"h_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1101",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"5C2O3EDDC"
]
},
"annotation":{
"bigg.reaction":[
"OPTCCL"
],
"metanetx.reaction":[
"MNXR142617"
],
"sbo":"SBO:0000176"
}
},
{
"id":"2HH24DDH",
"name":"2hh24dd hydratase",
"metabolites":{
"2hh24dd_c":-1.0,
"4h2kpi_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1105",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"2HH24DDH"
]
},
"annotation":{
"bigg.reaction":[
"2HH24DDH"
],
"metanetx.reaction":[
"MNXR94799"
],
"sbo":"SBO:0000176"
}
},
{
"id":"4H2KPILY",
"name":"4h2kpi Lyase",
"metabolites":{
"4h2kpi_c":-1.0,
"pyr_c":1.0,
"sucsal_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1106",
"subsystem":"4 hydroxyphenylacetate catabolism",
"notes":{
"original_bigg_ids":[
"4H2KPILY"
]
},
"annotation":{
"bigg.reaction":[
"4H2KPILY"
],
"ec-code":[
"4.1.2.52"
],
"kegg.reaction":[
"R01645"
],
"metanetx.reaction":[
"MNXR95000"
],
"rhea":[
"25788",
"25791",
"25789",
"25790"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01202"
]
}
},
{
"id":"EX_colipa20Oag_e",
"name":"O antigen x20 core oligosaccharide lipid A exchange",
"metabolites":{
"colipa20Oag_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_colipa20Oag_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_colipa20Oag_e"
],
"metanetx.reaction":[
"MNXR105287"
],
"sbo":"SBO:0000627"
}
},
{
"id":"colipa20Oagtex",
"name":"O antigen x20 core oligosaccharide lipid A transport periplasm to extracellular ",
"metabolites":{
"colipa20Oag_e":1.0,
"colipa20Oag_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"colipa20Oagtex"
]
},
"annotation":{
"bigg.reaction":[
"colipa20Oagtex"
],
"metanetx.reaction":[
"MNXR105287"
],
"sbo":"SBO:0000185"
}
},
{
"id":"udcdp20OagLpp",
"name":"O antigen x20 ligase periplasm ",
"metabolites":{
"colipa20Oag_p":1.0,
"colipa_p":-1.0,
"h_p":1.0,
"udcdp20Oag_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3713",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"udcdp20OagLpp"
]
},
"annotation":{
"bigg.reaction":[
"udcdp20OagLpp"
],
"metanetx.reaction":[
"MNXR106332"
],
"sbo":"SBO:0000176"
}
},
{
"id":"udcdpgalrmnmanabetpp",
"name":"Undecaprenyl diphosphate galactose rhamnose mannose abequose flippase cytoplasm to periplasm ",
"metabolites":{
"udcdpgalrmnmanabe_c":-1.0,
"udcdpgalrmnmanabe_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2088",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"udcdpgalrmnmanabetpp"
]
},
"annotation":{
"bigg.reaction":[
"udcdpgalrmnmanabetpp"
],
"metanetx.reaction":[
"MNXR102110"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OGLT",
"name":"Galactosyltransferase LPS O antigen biosynthesis ",
"metabolites":{
"udcdpgal_c":1.0,
"udcpp_c":-1.0,
"udpgal_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2082",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OGLT"
]
},
"annotation":{
"bigg.reaction":[
"OGLT"
],
"metanetx.reaction":[
"MNXR102158"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ORLT",
"name":"Rhamnosyl transferase LPS O antigen biosynthesis ",
"metabolites":{
"dtdp_c":1.0,
"dtdprmn_c":-1.0,
"h_c":1.0,
"udcdpgal_c":-1.0,
"udcdpgalrmn_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2085",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"ORLT"
]
},
"annotation":{
"bigg.reaction":[
"ORLT"
],
"metanetx.reaction":[
"MNXR143261"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SUCRtex",
"name":"Sucrose transport transport via diffusion (extracellular to periplasm)",
"metabolites":{
"sucr_e":-1.0,
"sucr_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SUCRtex"
]
},
"annotation":{
"bigg.reaction":[
"SUCRtex"
],
"metanetx.reaction":[
"MNXR104641"
],
"sabiork":[
"13123"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09275"
]
}
},
{
"id":"OMLT",
"name":"Mannosyl transferase LPS O antigen biosynthesis ",
"metabolites":{
"gdp_c":1.0,
"gdpmann_c":-1.0,
"h_c":1.0,
"udcdpgalrmn_c":-1.0,
"udcdpgalrmnman_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2086",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OMLT"
]
},
"annotation":{
"bigg.reaction":[
"OMLT"
],
"metanetx.reaction":[
"MNXR138668"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP19pp",
"name":"O antigen polymerase 19 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp19Oag_p":-1.0,
"udcdp20Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP19pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP19pp"
],
"metanetx.reaction":[
"MNXR102122"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OALT",
"name":"Abequosyl transferase LPS O antigen biosynthesis ",
"metabolites":{
"cdp_c":1.0,
"cdpabeq_c":-1.0,
"h_c":1.0,
"udcdpgalrmnman_c":-1.0,
"udcdpgalrmnmanabe_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2087",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OALT"
]
},
"annotation":{
"bigg.reaction":[
"OALT"
],
"metanetx.reaction":[
"MNXR138664"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SULFACtex",
"name":"Sulfoaceate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"sulfac_e":-1.0,
"sulfac_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SULFACtex"
]
},
"annotation":{
"bigg.reaction":[
"SULFACtex"
],
"metanetx.reaction":[
"MNXR104646"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09278"
]
}
},
{
"id":"MAN1PT2",
"name":"Mannose-1-phosphate guanylyltransferase (GDP)",
"metabolites":{
"gdp_c":-1.0,
"gdpmann_c":1.0,
"h_c":-1.0,
"man1p_c":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2105_S or STM2084",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"MAN1PT2"
]
},
"annotation":{
"bigg.reaction":[
"MAN1PT2"
],
"biocyc":[
"META:MANNPGUANYLTRANGDP-RXN"
],
"ec-code":[
"2.7.7.22"
],
"kegg.reaction":[
"R00883"
],
"metanetx.reaction":[
"MNXR101376"
],
"rhea":[
"12906",
"12908",
"12907",
"12905"
],
"sabiork":[
"9123"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00640"
]
}
},
{
"id":"G1PCTYT",
"name":"Alpha-D-glucose cytidylyltransferase",
"metabolites":{
"cdpglc_c":1.0,
"ctp_c":-1.0,
"g1p_c":-1.0,
"h_c":-1.0,
"ppi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2092",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"G1PCT"
]
},
"annotation":{
"bigg.reaction":[
"G1PCTYT"
],
"biocyc":[
"META:2.7.7.33-RXN"
],
"ec-code":[
"2.7.7.33"
],
"kegg.reaction":[
"R00956"
],
"metanetx.reaction":[
"MNXR99842"
],
"sabiork":[
"1269"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00702"
]
}
},
{
"id":"SULR",
"name":"Sulfite reductase (NADPH2)",
"metabolites":{
"h2o_c":3.0,
"h2s_c":1.0,
"h_c":-5.0,
"nadp_c":3.0,
"nadph_c":-3.0,
"so3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2947 and STM2948",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"SULRi"
]
},
"annotation":{
"bigg.reaction":[
"SULR"
],
"biocyc":[
"META:SULFITE-REDUCT-RXN"
],
"ec-code":[
"1.8.1.2"
],
"kegg.reaction":[
"R00858"
],
"metanetx.reaction":[
"MNXR104650"
],
"rhea":[
"13802",
"13803",
"13804",
"13801"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00623"
]
}
},
{
"id":"CDPGLC46DH",
"name":"CDP glucose 4 6 dehydratase",
"metabolites":{
"cdp4dh6doglc_c":1.0,
"cdpglc_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2091",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"CDPGLC46DH"
]
},
"annotation":{
"bigg.reaction":[
"CDPGLC46DH"
],
"biocyc":[
"META:CDP-GLUCOSE-46-DEHYDRATASE-RXN"
],
"ec-code":[
"4.2.1.45"
],
"kegg.reaction":[
"R02426"
],
"metanetx.reaction":[
"MNXR96556"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01750"
]
}
},
{
"id":"PMANM",
"name":"Phosphomannomutase",
"metabolites":{
"man1p_c":-1.0,
"man6p_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2104 or STM2083",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"PMANM"
]
},
"annotation":{
"bigg.reaction":[
"PMANM"
],
"biocyc":[
"META:PHOSMANMUT-RXN"
],
"ec-code":[
"5.4.2.8"
],
"kegg.reaction":[
"R01818"
],
"metanetx.reaction":[
"MNXR101729"
],
"reactome.reaction":[
"R-MMU-446201",
"R-SPO-446201",
"R-SSC-446201",
"R-RNO-446201",
"R-DDI-446201",
"R-SCE-446201",
"R-GGA-446201",
"R-OSA-446201",
"R-ATH-446201",
"R-DME-446201",
"R-PFA-446201",
"R-TGU-446201",
"R-XTR-446201",
"R-BTA-446201",
"R-CEL-446201",
"R-HSA-446201",
"R-CFA-446201",
"R-DRE-446201"
],
"rhea":[
"11141",
"11143",
"11142",
"11140"
],
"sabiork":[
"69"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01329"
]
}
},
{
"id":"OAP1pp",
"name":"O antigen polymerase 1 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp2Oag_p":1.0,
"udcdpgalrmnmanabe_p":-2.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP1pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP1pp"
],
"metanetx.reaction":[
"MNXR102123"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP2pp",
"name":"O antigen polymerase 2 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp2Oag_p":-1.0,
"udcdp3Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP2pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP2pp"
],
"metanetx.reaction":[
"MNXR102124"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CDP4D6DGLCRx",
"name":"CDP 4 dehydro 6 deoxyglucose reductase ",
"metabolites":{
"cdp4dh36ddglc_c":1.0,
"cdp4dh6doglc_c":-1.0,
"h2o_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2090 and STM2093",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"CDP4D6DGLCRx"
]
},
"annotation":{
"bigg.reaction":[
"CDP4D6DGLCRx"
],
"metanetx.reaction":[
"MNXR96546"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SULabcpp",
"name":"Sulfate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"so4_c":1.0,
"so4_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2441 and STM2443 and STM2442 and STM4063) or (STM0781 and STM0782 and STM0783) or (STM2441 and STM2444 and STM2443 and STM2442)",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SULabcpp"
]
},
"annotation":{
"bigg.reaction":[
"SULabcpp"
],
"biocyc":[
"META:3.6.3.25-RXN",
"META:ABC-70-RXN"
],
"ec-code":[
"3.6.3.25"
],
"metanetx.reaction":[
"MNXR104655"
],
"rhea":[
"10192#1",
"10193#1",
"10194#1",
"10195#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09276",
"rxn05153"
]
}
},
{
"id":"CDPABEQS",
"name":"CDP abequose synthase ",
"metabolites":{
"cdp4dh36ddglc_c":-1.0,
"cdpabeq_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2089",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"CDPABEQS"
]
},
"annotation":{
"bigg.reaction":[
"CDPABEQS"
],
"metanetx.reaction":[
"MNXR96547"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP3pp",
"name":"O antigen polymerase 3 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp3Oag_p":-1.0,
"udcdp4Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP3pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP3pp"
],
"metanetx.reaction":[
"MNXR102125"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP4pp",
"name":"O antigen polymerase 4 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp4Oag_p":-1.0,
"udcdp5Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP4pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP4pp"
],
"metanetx.reaction":[
"MNXR102126"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SALCHS4FEexs",
"name":"Salmochelin S4 Fe III binding spontaneous ",
"metabolites":{
"fe3_e":-1.0,
"salchs4_e":-1.0,
"salchs4fe_e":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS4FEexs"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4FEexs"
],
"metanetx.reaction":[
"MNXR104257"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP5pp",
"name":"O antigen polymerase 5 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp5Oag_p":-1.0,
"udcdp6Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP5pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP5pp"
],
"metanetx.reaction":[
"MNXR102127"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_salchs4_e",
"name":"Salmochelin S4 exchange",
"metabolites":{
"salchs4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_SALCHS4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_salchs4_e"
],
"metanetx.reaction":[
"MNXR143068"
],
"sbo":"SBO:0000627"
}
},
{
"id":"T2DECAI",
"name":"Trans-2-decenoyl-ACP isomerase",
"metabolites":{
"cdec3eACP_c":1.0,
"tdec2eACP_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1067",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"T2DECAI"
]
},
"annotation":{
"bigg.reaction":[
"T2DECAI"
],
"metanetx.reaction":[
"MNXR104659"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_salchs4fe_e",
"name":"Salmochelin S4 Fe III exchange",
"metabolites":{
"salchs4fe_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_SALCHS4FE_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_salchs4fe_e"
],
"metanetx.reaction":[
"MNXR143069"
],
"sbo":"SBO:0000627"
}
},
{
"id":"SALCHS4FEabcpp",
"name":"Salmochelin S4 Fe III transport via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"salchs4fe_c":1.0,
"salchs4fe_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0594 and STM0590 and STM0592 and STM0591",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS4FEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4FEabcpp"
],
"metanetx.reaction":[
"MNXR104256"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OAP6pp",
"name":"O antigen polymerase 6 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp6Oag_p":-1.0,
"udcdp7Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP6pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP6pp"
],
"metanetx.reaction":[
"MNXR102128"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP7pp",
"name":"O antigen polymerase 7 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp7Oag_p":-1.0,
"udcdp8Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP7pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP7pp"
],
"metanetx.reaction":[
"MNXR102129"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP8pp",
"name":"O antigen polymerase 8 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp8Oag_p":-1.0,
"udcdp9Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP8pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP8pp"
],
"metanetx.reaction":[
"MNXR102130"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP9pp",
"name":"O antigen polymerase 9 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp10Oag_p":1.0,
"udcdp9Oag_p":-1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP9pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP9pp"
],
"metanetx.reaction":[
"MNXR102131"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP10pp",
"name":"O antigen polymerase 10 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp10Oag_p":-1.0,
"udcdp11Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP10pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP10pp"
],
"metanetx.reaction":[
"MNXR102113"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP11pp",
"name":"O antigen polymerase 11 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp11Oag_p":-1.0,
"udcdp12Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP11pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP11pp"
],
"metanetx.reaction":[
"MNXR102114"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP12pp",
"name":"O antigen polymerase 12 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp12Oag_p":-1.0,
"udcdp13Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP12pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP12pp"
],
"metanetx.reaction":[
"MNXR102115"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SALCHS4tex",
"name":"Salmochelin S4 transport secretion periplasm ",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"salchs4_e":1.0,
"salchs4_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS4tex"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4tex"
],
"metanetx.reaction":[
"MNXR104261"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TALA",
"name":"Transaldolase",
"metabolites":{
"e4p_c":1.0,
"f6p_c":1.0,
"g3p_c":-1.0,
"s7p_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2473 or STM0007",
"subsystem":"Pentose Phosphate Pathway",
"notes":{
"original_bigg_ids":[
"TALA"
]
},
"annotation":{
"bigg.reaction":[
"TALA"
],
"biocyc":[
"META:TRANSALDOL-RXN"
],
"ec-code":[
"2.2.1.2"
],
"kegg.reaction":[
"R01827"
],
"metanetx.reaction":[
"MNXR104715"
],
"rhea":[
"17056",
"17055",
"17054",
"17053"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP13pp",
"name":"O antigen polymerase 13 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp13Oag_p":-1.0,
"udcdp14Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP13pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP13pp"
],
"metanetx.reaction":[
"MNXR102116"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP14pp",
"name":"O antigen polymerase 14 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp14Oag_p":-1.0,
"udcdp15Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP14pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP14pp"
],
"metanetx.reaction":[
"MNXR102117"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP15pp",
"name":"O antigen polymerase 15 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp15Oag_p":-1.0,
"udcdp16Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP15pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP15pp"
],
"metanetx.reaction":[
"MNXR102118"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TARTRtex",
"name":"Tartrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tartr__L_e":-1.0,
"tartr__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TARTRtex"
]
},
"annotation":{
"bigg.reaction":[
"TARTRtex"
],
"metanetx.reaction":[
"MNXR104724"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09284"
]
}
},
{
"id":"OAP16pp",
"name":"O antigen polymerase 16 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp16Oag_p":-1.0,
"udcdp17Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP16pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP16pp"
],
"metanetx.reaction":[
"MNXR102119"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAP17pp",
"name":"O antigen polymerase 17 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp17Oag_p":-1.0,
"udcdp18Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP17pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP17pp"
],
"metanetx.reaction":[
"MNXR102120"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TAURtex",
"name":"Taurine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"taur_e":-1.0,
"taur_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TAURtex"
]
},
"annotation":{
"bigg.reaction":[
"TAURtex"
],
"metanetx.reaction":[
"MNXR104733"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09286",
"rxn13402"
]
}
},
{
"id":"OAP18pp",
"name":"O antigen polymerase 18 periplasm ",
"metabolites":{
"h_p":1.0,
"udcdp18Oag_p":-1.0,
"udcdp19Oag_p":1.0,
"udcdpgalrmnmanabe_p":-1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"OAP18pp"
]
},
"annotation":{
"bigg.reaction":[
"OAP18pp"
],
"metanetx.reaction":[
"MNXR102121"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TCYNTtex",
"name":"Thiocyanate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tcynt_e":-1.0,
"tcynt_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TCYNTtex"
]
},
"annotation":{
"bigg.reaction":[
"TCYNTtex"
],
"metanetx.reaction":[
"MNXR104749"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09287"
]
}
},
{
"id":"CTECOAI6",
"name":"3-cis-2-trans-enoyl-CoA isomerase",
"metabolites":{
"td2coa_c":1.0,
"tdecoa_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3983",
"subsystem":"Membrane Lipid Metabolism",
"notes":{
"original_bigg_ids":[
"TDECOAI"
]
},
"annotation":{
"bigg.reaction":[
"CTECOAI6"
],
"ec-code":[
"5.3.3.8"
],
"metanetx.reaction":[
"MNXR96940"
],
"sbo":"SBO:0000176"
}
},
{
"id":"AIRStex",
"name":"Aminoimidazole riboside transport via diffusion extracellular to periplasm ",
"metabolites":{
"airs_e":-1.0,
"airs_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"AIRStex"
]
},
"annotation":{
"bigg.reaction":[
"AIRStex"
],
"metanetx.reaction":[
"MNXR95648"
],
"sbo":"SBO:0000185"
}
},
{
"id":"AIRStpp",
"name":"Aminoimidazole riboside facilitated transport periplasm ",
"metabolites":{
"airs_c":1.0,
"airs_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"AIRStpp"
]
},
"annotation":{
"bigg.reaction":[
"AIRStpp"
],
"metanetx.reaction":[
"MNXR95648"
],
"sbo":"SBO:0000185"
}
},
{
"id":"REMNANT1tpp",
"name":"Residual atoms of reaction DMBZIDSYN facilitated transport periplasm ",
"metabolites":{
"remnant1_c":1.0,
"remnant1_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"REMNANT1tpp"
]
},
"annotation":{
"bigg.reaction":[
"REMNANT1tpp"
],
"metanetx.reaction":[
"MNXR103992"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SALCHS4abcpp",
"name":"Salmochelin S4 transport via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"salchs4_c":-1.0,
"salchs4_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2774",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SALCHS4abcpp"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4abcpp"
],
"metanetx.reaction":[
"MNXR104260"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FEENTER2tpp",
"name":"Enterochelin transport2 via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"enter_c":-1.0,
"enter_p":1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2774",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FEENTER2tpp"
]
},
"annotation":{
"bigg.reaction":[
"FEENTER2tpp"
],
"metanetx.reaction":[
"MNXR99542"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TDP",
"name":"Thiamin pyrophosphatase",
"metabolites":{
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"thmmp_c":1.0,
"thmpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1235",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDP"
]
},
"annotation":{
"bigg.reaction":[
"TDP"
],
"biocyc":[
"META:RXN0-3542"
],
"ec-code":[
"3.6.1",
"3.6.1.-",
"3.6.1.15"
],
"kegg.reaction":[
"R00615"
],
"metanetx.reaction":[
"MNXR104756"
],
"rhea":[
"27998",
"28000",
"28001",
"27999"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00436"
]
}
},
{
"id":"EX_salchsx_e",
"name":"Salmochelin SX exchange",
"metabolites":{
"salchsx_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_SALCHSX_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_salchsx_e"
],
"metanetx.reaction":[
"MNXR104262"
],
"sbo":"SBO:0000627"
}
},
{
"id":"ARGDr",
"name":"Arginine deiminase",
"metabolites":{
"arg__L_c":-1.0,
"citr__L_c":1.0,
"h2o_c":-1.0,
"nh4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4467",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ARGDA"
]
},
"annotation":{
"bigg.reaction":[
"ARGDr"
],
"biocyc":[
"META:ARGININE-DEIMINASE-RXN"
],
"ec-code":[
"3.5.3.6"
],
"kegg.reaction":[
"R00552"
],
"metanetx.reaction":[
"MNXR95941"
],
"rhea":[
"19597",
"19598",
"19599",
"19600"
],
"sabiork":[
"97"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00395"
]
}
},
{
"id":"OCBT",
"name":"Ornithine carbamoyltransferase",
"metabolites":{
"cbp_c":-1.0,
"citr__L_c":1.0,
"h_c":1.0,
"orn_c":-1.0,
"pi_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4469 or STM4465",
"subsystem":"Arginine and Proline Metabolism",
"notes":{
"original_bigg_ids":[
"OCBT"
]
},
"annotation":{
"bigg.reaction":[
"OCBT"
],
"biocyc":[
"META:RXN-13482",
"META:ORNCARBAMTRANSFER-RXN"
],
"ec-code":[
"2.1.3.3"
],
"kegg.reaction":[
"R01398"
],
"metanetx.reaction":[
"MNXR102137"
],
"reactome.reaction":[
"R-OSA-70560",
"R-ATH-70560",
"R-CFA-70560",
"R-HSA-70560",
"R-BTA-70560",
"R-DRE-70560",
"R-RNO-70560",
"R-GGA-70560",
"R-SPO-70560",
"R-TGU-70560",
"R-XTR-70560",
"R-SSC-70560",
"R-MMU-70560",
"R-GGA-187588",
"R-SCE-70560"
],
"rhea":[
"19514",
"19516",
"19513",
"19515"
],
"sabiork":[
"98"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01019"
]
}
},
{
"id":"SALCHSXtex",
"name":"Salmochelin SX via diffusion extracellular to periplasm ",
"metabolites":{
"salchsx_e":-1.0,
"salchsx_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"SALCHSXtex"
]
},
"annotation":{
"bigg.reaction":[
"SALCHSXtex"
],
"metanetx.reaction":[
"MNXR104262"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TDPADGAT",
"name":"DTDP-4-amino-4,6-dideoxy-D-glucose acetyltransferase",
"metabolites":{
"accoa_c":-1.0,
"coa_c":1.0,
"dtdp4aaddg_c":1.0,
"dtdp4addg_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3924",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDPADGAT"
]
},
"annotation":{
"bigg.reaction":[
"TDPADGAT"
],
"biocyc":[
"META:TDPFUCACTRANS-RXN"
],
"ec-code":[
"2.3.1.210"
],
"kegg.reaction":[
"R10142"
],
"metanetx.reaction":[
"MNXR104757"
],
"rhea":[
"34445",
"34443",
"34446",
"28763",
"34444",
"28766",
"28764",
"28765"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn11409"
]
}
},
{
"id":"SALCHSXtpp",
"name":"Salmochelin SX facilitated transport periplasm ",
"metabolites":{
"salchsx_c":1.0,
"salchsx_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SALCHSXtpp"
]
},
"annotation":{
"bigg.reaction":[
"SALCHSXtpp"
],
"metanetx.reaction":[
"MNXR104262"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CSNt2pp",
"name":"Cytosine transport in via proton symport (periplasm)",
"metabolites":{
"csn_c":1.0,
"csn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3333",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CSNt2pp"
]
},
"annotation":{
"bigg.reaction":[
"CSNt2pp"
],
"biocyc":[
"META:TRANS-RXN-116",
"META:TRANS-RXN-199"
],
"metanetx.reaction":[
"MNXR96929"
],
"rhea":[
"29937",
"29935",
"29936",
"29938"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05527",
"rxn08266"
]
}
},
{
"id":"CBMKr",
"name":"Carbamate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"cbp_c":1.0,
"co2_c":-1.0,
"h_c":2.0,
"nh4_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0532 or STM4466",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"CBMKr"
]
},
"annotation":{
"bigg.reaction":[
"CBMKr"
],
"biocyc":[
"META:CARBAMATE-KINASE-RXN"
],
"ec-code":[
"2.7.2.2"
],
"kegg.reaction":[
"R00150"
],
"metanetx.reaction":[
"MNXR96482"
],
"rhea":[
"10154",
"10152",
"10155",
"10153"
],
"sabiork":[
"93"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00114"
]
}
},
{
"id":"3PGt6pp",
"name":"3 Phospho D glycerate phosphate antiporter periplasm ",
"metabolites":{
"3pg_c":1.0,
"3pg_p":-1.0,
"pi_c":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2399",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"3PGt6pp"
]
},
"annotation":{
"bigg.reaction":[
"3PGt6pp"
],
"metanetx.reaction":[
"MNXR94972"
],
"sbo":"SBO:0000185"
}
},
{
"id":"2PGt6pp",
"name":"D Glycerate 2 phosphate phosphate antiporter periplasm ",
"metabolites":{
"2pg_c":1.0,
"2pg_p":-1.0,
"pi_c":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2399",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"2PGt6pp"
]
},
"annotation":{
"bigg.reaction":[
"2PGt6pp"
],
"metanetx.reaction":[
"MNXR94825"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PEPt6pp",
"name":"Phosphoenolpyruvate phosphate antiporter periplasm ",
"metabolites":{
"pep_c":1.0,
"pep_p":-1.0,
"pi_c":-1.0,
"pi_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2399",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"PEPt6pp"
]
},
"annotation":{
"bigg.reaction":[
"PEPt6pp"
],
"metanetx.reaction":[
"MNXR102490"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CSND",
"name":"Cytosine deaminase",
"metabolites":{
"csn_c":-1.0,
"h2o_c":-1.0,
"h_c":-1.0,
"nh4_c":1.0,
"ura_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3334",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"CSND"
]
},
"annotation":{
"bigg.reaction":[
"CSND"
],
"biocyc":[
"META:CYTDEAM-RXN"
],
"ec-code":[
"3.5.4.1"
],
"kegg.reaction":[
"R00974"
],
"metanetx.reaction":[
"MNXR96927"
],
"rhea":[
"20605",
"20606",
"20607",
"20608"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00717"
]
}
},
{
"id":"ALCD19",
"name":"Alcohol dehydrogenase (glycerol)",
"metabolites":{
"glyald_c":-1.0,
"glyc_c":1.0,
"h_c":-1.0,
"nad_c":1.0,
"nadh_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1627",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"ALCD19"
]
},
"annotation":{
"bigg.reaction":[
"ALCD19"
],
"ec-code":[
"1.1.1.72",
"1.1.1.21"
],
"kegg.reaction":[
"R01036"
],
"metanetx.reaction":[
"MNXR95709"
],
"rhea":[
"30029",
"30027",
"30028",
"30030"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00763"
]
}
},
{
"id":"ALCD2x",
"name":"Alcohol dehydrogenase (ethanol)",
"metabolites":{
"acald_c":1.0,
"etoh_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1627 or STM1567 or STM1749 or STM2461",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"ALCD2x"
]
},
"annotation":{
"bigg.reaction":[
"ALCD2x"
],
"biocyc":[
"META:ALCOHOL-DEHYDROG-RXN"
],
"ec-code":[
"1.1.1.71",
"1.1.1.1"
],
"kegg.reaction":[
"R00754"
],
"metanetx.reaction":[
"MNXR95725"
],
"reactome.reaction":[
"R-MMU-71707",
"R-XTR-71707",
"R-CFA-71707",
"R-OSA-71707",
"R-RNO-71707",
"R-HSA-71707",
"R-SSC-71707",
"R-GGA-71707",
"R-SPO-71707",
"R-DME-71707",
"R-DRE-71707",
"R-BTA-71707",
"R-ATH-71707",
"R-SCE-71707",
"R-TGU-71707",
"R-CEL-71707",
"R-DDI-71707"
],
"rhea":[
"25292",
"25290",
"25291",
"25293"
],
"sabiork":[
"597"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00543"
]
}
},
{
"id":"EX_pep_e",
"name":"Phosphoenolpyruvate exchange",
"metabolites":{
"pep_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_pep_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_pep_e"
],
"metanetx.reaction":[
"MNXR102494"
],
"sbo":"SBO:0000627"
}
},
{
"id":"FALDH2",
"name":"Formaldehyde dehydrogenase",
"metabolites":{
"Sfglutth_c":1.0,
"h_c":1.0,
"hmgth_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1627",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"FALDH2"
]
},
"annotation":{
"bigg.reaction":[
"FALDH2"
],
"biocyc":[
"META:RXN0-276"
],
"ec-code":[
"1.1.1.284",
"1.1.1"
],
"kegg.reaction":[
"R06983"
],
"metanetx.reaction":[
"MNXR99237"
],
"reactome.reaction":[
"R-ATH-5692237",
"R-XTR-5692237",
"R-SSC-5692237",
"R-HSA-5692237",
"R-SCE-5692237",
"R-CFA-5692237",
"R-CEL-5692237",
"R-SPO-5692237",
"R-RNO-5692237",
"R-GGA-5692237",
"R-BTA-5692237",
"R-OSA-5692237",
"R-DDI-5692237",
"R-TGU-5692237",
"R-MMU-5692237",
"R-DME-5692237",
"R-DRE-5692237"
],
"rhea":[
"19985",
"19987",
"19986",
"19988"
],
"sabiork":[
"7489"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08460",
"rxn04792"
]
}
},
{
"id":"TDPAGTA",
"name":"DTDP-4-amino-4,6-dideoxy-D-glucose transaminase",
"metabolites":{
"akg_c":1.0,
"dtdp4addg_c":1.0,
"dtdp4d6dg_c":-1.0,
"glu__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3925",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDPAGTA"
]
},
"annotation":{
"bigg.reaction":[
"TDPAGTA"
],
"biocyc":[
"META:RFFTRANS-RXN"
],
"ec-code":[
"2.6.1.59"
],
"kegg.reaction":[
"R04438"
],
"metanetx.reaction":[
"MNXR104758"
],
"rhea":[
"28633",
"28632",
"28634",
"28631"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03066"
]
}
},
{
"id":"DPR",
"name":"2-dehydropantoate 2-reductase",
"metabolites":{
"2dhp_c":-1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0,
"pant__R_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3909 or STM0434 or STM2573",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DPR"
]
},
"annotation":{
"bigg.reaction":[
"DPR"
],
"biocyc":[
"META:2-DEHYDROPANTOATE-REDUCT-RXN"
],
"ec-code":[
"1.1.1.169"
],
"kegg.reaction":[
"R02472"
],
"metanetx.reaction":[
"MNXR97779"
],
"rhea":[
"16233",
"16234",
"16235",
"16236"
],
"sabiork":[
"2405"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01790"
]
}
},
{
"id":"PEPtex",
"name":"Phosphoenolpyruvate transport via diffusion extracellular to periplasm ",
"metabolites":{
"pep_e":-1.0,
"pep_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"PEPtex"
]
},
"annotation":{
"bigg.reaction":[
"PEPtex"
],
"metanetx.reaction":[
"MNXR102494"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_2pg_e",
"name":"D Glycerate 2 phosphate exchange",
"metabolites":{
"2pg_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_2pg_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_2pg_e"
],
"metanetx.reaction":[
"MNXR94826"
],
"sbo":"SBO:0000627"
}
},
{
"id":"2PGtex",
"name":"D Glycerate 2 phosphate transport via diffusion extracellular to periplasm ",
"metabolites":{
"2pg_e":-1.0,
"2pg_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"2PGtex"
]
},
"annotation":{
"bigg.reaction":[
"2PGtex"
],
"metanetx.reaction":[
"MNXR94826"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_3pg_e",
"name":"3 Phospho D glycerate exchange",
"metabolites":{
"3pg_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_3pg_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_3pg_e"
],
"metanetx.reaction":[
"MNXR94974"
],
"sbo":"SBO:0000627"
}
},
{
"id":"LIPAHT2ex",
"name":"Core oligosaccharide lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane)",
"metabolites":{
"colipa_e":-1.0,
"h2o_e":1.0,
"h_e":-1.0,
"hacolipa_e":1.0,
"hdca_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0628",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"LIPAHT2ex"
]
},
"annotation":{
"bigg.reaction":[
"LIPAHT2ex"
],
"metanetx.reaction":[
"MNXR101078"
],
"sbo":"SBO:0000176"
}
},
{
"id":"LIPAHTex",
"name":"Lipid A:hexadecanoate transferase (n-C16:0) (extracellular membrane)",
"metabolites":{
"h2o_e":1.0,
"h_e":-1.0,
"halipa_e":1.0,
"hdca_e":-1.0,
"lipa_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0628",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"LIPAHTex"
]
},
"annotation":{
"bigg.reaction":[
"LIPAHTex"
],
"metanetx.reaction":[
"MNXR101079"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08790"
]
}
},
{
"id":"3PGtex",
"name":"3 Phospho D glycerate transport via diffusion extracellular to periplasm ",
"metabolites":{
"3pg_e":-1.0,
"3pg_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"3PGtex"
]
},
"annotation":{
"bigg.reaction":[
"3PGtex"
],
"metanetx.reaction":[
"MNXR94974"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TDPDRE",
"name":"DTDP-4-dehydrorhamnose 3,5-epimerase",
"metabolites":{
"dtdp4d6dg_c":-1.0,
"dtdp4d6dm_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2094",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDPDRE"
]
},
"annotation":{
"bigg.reaction":[
"TDPDRE"
],
"biocyc":[
"META:DTDPDEHYDRHAMEPIM-RXN"
],
"ec-code":[
"5.1.3.13"
],
"kegg.reaction":[
"R06514"
],
"metanetx.reaction":[
"MNXR104759"
],
"rhea":[
"16970",
"16969",
"16972",
"16971"
],
"sabiork":[
"2651"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02000"
]
}
},
{
"id":"SERD_L",
"name":"L-serine deaminase",
"metabolites":{
"nh4_c":1.0,
"pyr_c":1.0,
"ser__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3240 or STM1826 or STM2971 or STM2196",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"SERD_L"
]
},
"annotation":{
"bigg.reaction":[
"SERD_L"
],
"biocyc":[
"META:4.3.1.17-RXN"
],
"ec-code":[
"4.3.1.15",
"4.3.1.19",
"4.3.1.17"
],
"kegg.reaction":[
"R00220",
"R00223"
],
"metanetx.reaction":[
"MNXR104339"
],
"rhea":[
"19170",
"19169",
"19171",
"19172"
],
"sabiork":[
"745"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00165"
]
}
},
{
"id":"CYTBD2pp",
"name":"Cytochrome oxidase bd (menaquinol-8: 2 protons) (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h_c":-2.0,
"h_p":2.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"o2_c":-0.5
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1792 and STM1793",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CYTBD2pp"
]
},
"annotation":{
"bigg.reaction":[
"CYTBD2pp"
],
"metanetx.reaction":[
"MNXR97032"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08287",
"rxn10806"
]
}
},
{
"id":"CYTBDpp",
"name":"Cytochrome oxidase bd (ubiquinol-8: 2 protons) (periplasm)",
"metabolites":{
"h2o_c":1.0,
"h_c":-2.0,
"h_p":2.0,
"o2_c":-0.5,
"q8_c":1.0,
"q8h2_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1792 and STM1793) or (STM0740 and STM0741)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"CYTBDpp"
]
},
"annotation":{
"bigg.reaction":[
"CYTBDpp"
],
"metanetx.reaction":[
"MNXR97031"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12494",
"rxn10112",
"rxn08288"
]
}
},
{
"id":"TARTD",
"name":"L(+)-tartrate dehydratase",
"metabolites":{
"h2o_c":1.0,
"oaa_c":1.0,
"tartr__L_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3355 and STM3354",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TARTD"
]
},
"annotation":{
"bigg.reaction":[
"TARTD"
],
"biocyc":[
"META:LTARTDEHYDRA-RXN"
],
"ec-code":[
"4.2.1.32"
],
"kegg.reaction":[
"R00339"
],
"metanetx.reaction":[
"MNXR104718"
],
"rhea":[
"15413",
"15416",
"15415",
"15414"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00245"
]
}
},
{
"id":"TDPDRR",
"name":"DTDP-4-dehydrorhamnose reductase",
"metabolites":{
"dtdp4d6dm_c":-1.0,
"dtdprmn_c":1.0,
"h_c":-1.0,
"nadp_c":1.0,
"nadph_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2096",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDPDRR"
]
},
"annotation":{
"bigg.reaction":[
"TDPDRR"
],
"biocyc":[
"META:DTDPDEHYRHAMREDUCT-RXN"
],
"ec-code":[
"1.1.1.133"
],
"kegg.reaction":[
"R02777"
],
"metanetx.reaction":[
"MNXR104760"
],
"rhea":[
"21796",
"21797",
"21798",
"21799"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02003"
]
}
},
{
"id":"TARTRtpp",
"name":"Tartrate facilitated transport periplasm ",
"metabolites":{
"tartr__L_c":1.0,
"tartr__L_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"TARTRtpp"
]
},
"annotation":{
"bigg.reaction":[
"TARTRtpp"
],
"metanetx.reaction":[
"MNXR104724"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09284"
]
}
},
{
"id":"NI2tpp",
"name":"Nickel (+2) transport in via permease (no H+)",
"metabolites":{
"ni2_c":1.0,
"ni2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3952 or STM2783",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NI2tpp"
]
},
"annotation":{
"bigg.reaction":[
"NI2tpp"
],
"biocyc":[
"META:TRANS-RXN-141B"
],
"metanetx.reaction":[
"MNXR101958"
],
"rhea":[
"29833",
"29831",
"29834",
"29832"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ACANTHAT",
"name":"Acetyl-CoA:anthranilate acetyltransferase",
"metabolites":{
"acanth_c":1.0,
"accoa_c":-1.0,
"anth_c":-1.0,
"coa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1582",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"ACANTHAT"
]
},
"annotation":{
"bigg.reaction":[
"ACANTHAT"
],
"metanetx.reaction":[
"MNXR95213"
],
"rhea":[
"28551",
"28550",
"28553",
"28552"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08034"
]
}
},
{
"id":"GLTPD",
"name":"Galactitol-1-phosphate dehydrogenase",
"metabolites":{
"galt1p_c":-1.0,
"h_c":1.0,
"nad_c":-1.0,
"nadh_c":1.0,
"tag6p__D_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3261",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GLTPD"
]
},
"annotation":{
"bigg.reaction":[
"GLTPD"
],
"ec-code":[
"1.1.1.251",
"1.1.1.M6"
],
"kegg.reaction":[
"R05571"
],
"metanetx.reaction":[
"MNXR100275"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03856"
]
}
},
{
"id":"TGBPA",
"name":"Tagatose-bisphosphate aldolase",
"metabolites":{
"dhap_c":1.0,
"g3p_c":1.0,
"tagdp__D_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3257 and STM3253",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TGBPA"
]
},
"annotation":{
"bigg.reaction":[
"TGBPA"
],
"biocyc":[
"META:TAGAALDOL-RXN"
],
"ec-code":[
"4.1.2.40"
],
"kegg.reaction":[
"R01069"
],
"metanetx.reaction":[
"MNXR104798"
],
"rhea":[
"22949",
"22950",
"22951",
"22948"
],
"sabiork":[
"1339"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00787"
]
}
},
{
"id":"CAT",
"name":"Catalase",
"metabolites":{
"h2o2_c":-2.0,
"h2o_c":2.0,
"o2_c":1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM1318 or STM4106 or STM1731",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"CAT"
]
},
"annotation":{
"bigg.reaction":[
"CAT"
],
"biocyc":[
"META:CATAL-RXN"
],
"ec-code":[
"1.11.1.21",
"1.11.1.6"
],
"kegg.reaction":[
"R00009"
],
"metanetx.reaction":[
"MNXR96455"
],
"reactome.reaction":[
"R-XTR-76031",
"R-DME-76031",
"R-CEL-76031",
"R-GGA-76031",
"R-RNO-76031",
"R-SCE-76031",
"R-TGU-76031",
"R-ATH-76031",
"R-HSA-76031",
"R-MMU-76031",
"R-SPO-76031",
"R-BTA-76031",
"R-OSA-76031",
"R-SSC-76031",
"R-DRE-76031",
"R-CFA-76031",
"R-HSA-1222704",
"R-DDI-76031"
],
"rhea":[
"20309",
"20310",
"20311",
"20312"
],
"sabiork":[
"373"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00006"
]
}
},
{
"id":"CHORM",
"name":"Chorismate mutase",
"metabolites":{
"chor_c":-1.0,
"pphn_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2667 or STM2669 or STM1269",
"subsystem":"Tyrosine Tryptophan and Phenylalanine Metabolism",
"notes":{
"original_bigg_ids":[
"CHORM"
]
},
"annotation":{
"bigg.reaction":[
"CHORM"
],
"biocyc":[
"META:CHORISMATEMUT-RXN"
],
"ec-code":[
"5.4.99.5"
],
"kegg.reaction":[
"R01715"
],
"metanetx.reaction":[
"MNXR96708"
],
"rhea":[
"13897",
"13899",
"13898",
"13900"
],
"sabiork":[
"1827"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01256"
]
}
},
{
"id":"GUI1",
"name":"Glucuronate isomerase (D-glucuronate)",
"metabolites":{
"fruur_c":1.0,
"glcur_c":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3137",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GUI1"
]
},
"annotation":{
"bigg.reaction":[
"GUI1"
],
"ec-code":[
"5.3.1.12"
],
"kegg.reaction":[
"R01482"
],
"metanetx.reaction":[
"MNXR100468"
],
"rhea":[
"13051",
"13050",
"13049",
"13052"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01080"
]
}
},
{
"id":"TDPGDH",
"name":"DTDPglucose 4,6-dehydratase",
"metabolites":{
"dtdp4d6dg_c":1.0,
"dtdpglu_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2097 or STM3922",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"TDPGDH"
]
},
"annotation":{
"bigg.reaction":[
"TDPGDH"
],
"biocyc":[
"META:DTDPGLUCDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.46"
],
"kegg.reaction":[
"R06513"
],
"metanetx.reaction":[
"MNXR104761"
],
"rhea":[
"17221",
"17222",
"17224",
"17223"
],
"sabiork":[
"2648"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01997"
]
}
},
{
"id":"GUI2",
"name":"Glucuronate isomerase (D-galacturonate)",
"metabolites":{
"galur_c":-1.0,
"tagur_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3137",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GUI2"
]
},
"annotation":{
"bigg.reaction":[
"GUI2"
],
"ec-code":[
"5.3.1.12"
],
"kegg.reaction":[
"R01983"
],
"metanetx.reaction":[
"MNXR100469"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01457"
]
}
},
{
"id":"MNNH",
"name":"D-mannonate hydrolyase",
"metabolites":{
"2ddglcn_c":1.0,
"h2o_c":1.0,
"mana_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3135",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MNNH"
]
},
"annotation":{
"bigg.reaction":[
"MNNH"
],
"biocyc":[
"META:MANNONDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.8"
],
"kegg.reaction":[
"R05606"
],
"metanetx.reaction":[
"MNXR138624"
],
"rhea":[
"20098",
"20097",
"20100",
"20099"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03885"
]
}
},
{
"id":"MANAO",
"name":"Mannonate oxidoreductase",
"metabolites":{
"fruur_c":1.0,
"h_c":1.0,
"mana_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3136",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"MANAO"
]
},
"annotation":{
"bigg.reaction":[
"MANAO"
],
"biocyc":[
"META:MANNONOXIDOREDUCT-RXN"
],
"ec-code":[
"1.1.1.57"
],
"kegg.reaction":[
"R02454"
],
"metanetx.reaction":[
"MNXR101389"
],
"rhea":[
"15729",
"15732",
"15731",
"15730"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01775"
]
}
},
{
"id":"DAPAL",
"name":"2,3-diaminopropionate amonnia lyase",
"metabolites":{
"23dappa_c":-1.0,
"h2o_c":-1.0,
"nh4_c":2.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1002",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DAPAL"
]
},
"annotation":{
"bigg.reaction":[
"DAPAL"
],
"biocyc":[
"META:4.3.1.15-RXN"
],
"ec-code":[
"4.3.1.15"
],
"kegg.reaction":[
"R00195"
],
"metanetx.reaction":[
"MNXR97138"
],
"rhea":[
"22085",
"22087",
"22084",
"22086"
],
"sabiork":[
"741",
"9888"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00144"
]
}
},
{
"id":"UDPGALM",
"name":"UDPgalactopyranose mutase",
"metabolites":{
"udpgal_c":-1.0,
"udpgalfur_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0719",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDPGALM"
]
},
"annotation":{
"bigg.reaction":[
"UDPGALM"
],
"biocyc":[
"META:GALPMUT-RXN"
],
"ec-code":[
"5.4.99.9"
],
"kegg.reaction":[
"R00505"
],
"metanetx.reaction":[
"MNXR105058"
],
"rhea":[
"24135",
"24134",
"24132",
"24133"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00358"
]
}
},
{
"id":"HYD1pp",
"name":"Hydrogenase (ubiquinone-8: 2 protons) (periplasm)",
"metabolites":{
"h2_c":-1.0,
"h_c":-2.0,
"h_p":2.0,
"q8_c":-1.0,
"q8h2_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1786 and STM1787 and STM1788) or (STM3147 and STM3150) or (STM2847 and STM2848 and STM2849 and STM2850 and STM2851 and STM2852) or (STM1538 and STM1539)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"HYD1pp"
]
},
"annotation":{
"bigg.reaction":[
"HYD1pp"
],
"metanetx.reaction":[
"MNXR100753"
],
"rhea":[
"29062#1",
"29061#1",
"29059#1",
"29060#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08734",
"rxn10118"
]
}
},
{
"id":"HYD2pp",
"name":"Hydrogenase (menaquinone8: 2 protons) (periplasm)",
"metabolites":{
"h2_c":-1.0,
"h_c":-2.0,
"h_p":2.0,
"mql8_c":1.0,
"mqn8_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1786 and STM1787 and STM1788) or (STM3147 and STM3150) or (STM1538 and STM1539)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"HYD2pp"
]
},
"annotation":{
"bigg.reaction":[
"HYD2pp"
],
"metanetx.reaction":[
"MNXR100754"
],
"rhea":[
"29052#1",
"29051#1",
"29054#1",
"29053#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08735",
"rxn10119"
]
}
},
{
"id":"HYD3pp",
"name":"Hydrogenase (Demethylmenaquinone-8: 2 protons) (periplasm)",
"metabolites":{
"2dmmq8_c":-1.0,
"2dmmql8_c":1.0,
"h2_c":-1.0,
"h_c":-2.0,
"h_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1786 and STM1787 and STM1788) or (STM3147 and STM3150) or (STM1538 and STM1539)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"HYD3pp"
]
},
"annotation":{
"bigg.reaction":[
"HYD3pp"
],
"ec-code":[
"1.18.99.1"
],
"metanetx.reaction":[
"MNXR100755"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08736",
"rxn10117"
]
}
},
{
"id":"OAADCS",
"name":"Oxaloacetate decarboxylase sodium pump",
"metabolites":{
"co2_c":1.0,
"h_c":-1.0,
"na1_c":-2.0,
"na1_p":2.0,
"oaa_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0054 and STM0055 and STM0056) or (STM3351 and STM3352 and STM3353)",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"OAADCS"
]
},
"annotation":{
"bigg.reaction":[
"OAADCS"
],
"metanetx.reaction":[
"MNXR102098"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CITt4pp",
"name":"Citrate transport via sodium symport periplasm ",
"metabolites":{
"cit_c":1.0,
"cit_p":-1.0,
"na1_c":2.0,
"na1_p":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0057",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CITt4pp"
]
},
"annotation":{
"bigg.reaction":[
"CITt4pp"
],
"metanetx.reaction":[
"MNXR96749"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_tet_e",
"name":"Tetrathionate exchange",
"metabolites":{
"tet_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tet_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tet_e"
],
"metanetx.reaction":[
"MNXR104796"
],
"sbo":"SBO:0000627"
}
},
{
"id":"TDSK",
"name":"Tetraacyldisaccharide 4'kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"lipidA_c":1.0,
"lipidAds_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0985",
"subsystem":"Lipopolysaccharide Biosynthesis Recycling",
"notes":{
"original_bigg_ids":[
"TDSK"
]
},
"annotation":{
"bigg.reaction":[
"TDSK"
],
"biocyc":[
"META:TETRAACYLDISACC4KIN-RXN"
],
"ec-code":[
"2.7.1.130"
],
"kegg.reaction":[
"R04657"
],
"metanetx.reaction":[
"MNXR104762"
],
"rhea":[
"20702",
"20701",
"20703",
"20700"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03181"
]
}
},
{
"id":"TETtex",
"name":"Tetrathionate transport via diffusion extracellular to periplasm ",
"metabolites":{
"tet_e":-1.0,
"tet_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TETtex"
]
},
"annotation":{
"bigg.reaction":[
"TETtex"
],
"metanetx.reaction":[
"MNXR104796"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_frmd_e",
"name":"Formamide exchange",
"metabolites":{
"frmd_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_foam_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_frmd_e"
],
"metanetx.reaction":[
"MNXR99611"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn13708"
]
}
},
{
"id":"FOAMtex",
"name":"Formamide transport via diffusion extracellular to periplasm ",
"metabolites":{
"frmd_e":-1.0,
"frmd_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FOAMtex"
]
},
"annotation":{
"bigg.reaction":[
"FOAMtex"
],
"metanetx.reaction":[
"MNXR99611"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13708"
]
}
},
{
"id":"DDGLCNt2rpp",
"name":"2-dehydro-3-deoxy-D-gluconate transport via proton symport, reversible (periplasm)",
"metabolites":{
"2ddglcn_c":1.0,
"2ddglcn_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0161",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DDGLCNt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"DDGLCNt2rpp"
],
"biocyc":[
"META:TRANS-RXN-113"
],
"metanetx.reaction":[
"MNXR138207"
],
"rhea":[
"29945",
"29943",
"29946",
"29944"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05681",
"rxn08319"
]
}
},
{
"id":"CITt_kt",
"name":"Citrate proton symport periplasm ",
"metabolites":{
"cit_c":1.0,
"cit_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0689",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CITt2pp"
]
},
"annotation":{
"bigg.reaction":[
"CITt_kt"
],
"metanetx.reaction":[
"MNXR96746"
],
"rhea":[
"32126",
"32123",
"32125",
"32124"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05211",
"rxn12792"
]
}
},
{
"id":"CITtupp",
"name":"Citrate transport periplasm ",
"metabolites":{
"cit_c":1.0,
"cit_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2786 and STM2787 and STM2788",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"CITtupp"
]
},
"annotation":{
"bigg.reaction":[
"CITtupp"
],
"metanetx.reaction":[
"MNXR96756"
],
"rhea":[
"33184",
"33186",
"33183",
"33185"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10946",
"rxn08217"
]
}
},
{
"id":"EX_tartr__D_e",
"name":"D-tartrate exchange",
"metabolites":{
"tartr__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tartr_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tartr__D_e"
],
"metanetx.reaction":[
"MNXR104722"
],
"rhea":[
"35199",
"35200",
"35202",
"35201"
],
"sbo":"SBO:0000627"
}
},
{
"id":"TARTRDtex",
"name":"D-tartrate transport via diffusion (extracellular to periplasm)",
"metabolites":{
"tartr__D_e":-1.0,
"tartr__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TARTRDtex"
]
},
"annotation":{
"bigg.reaction":[
"TARTRDtex"
],
"metanetx.reaction":[
"MNXR104722"
],
"rhea":[
"35199",
"35200",
"35202",
"35201"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ICITtupp",
"name":"Isocitrate transport periplasm ",
"metabolites":{
"icit_c":1.0,
"icit_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2786 and STM2787 and STM2788",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ICITtupp"
]
},
"annotation":{
"bigg.reaction":[
"ICITtupp"
],
"metanetx.reaction":[
"MNXR100788"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12803"
]
}
},
{
"id":"TDSR1",
"name":"Thiol:disulfide reductase (DsbC)",
"metabolites":{
"dsbcox_p":-1.0,
"dsbcrd_p":1.0,
"dsbdox_c":1.0,
"dsbdrd_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3043 and STM4323",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"TDSR1"
]
},
"annotation":{
"bigg.reaction":[
"TDSR1"
],
"metanetx.reaction":[
"MNXR104764"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09292"
]
}
},
{
"id":"ACONCtupp",
"name":"Cisaconitate transport periplasm ",
"metabolites":{
"acon_C_c":1.0,
"acon_C_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2786 and STM2787 and STM2788",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ACONCtupp"
]
},
"annotation":{
"bigg.reaction":[
"ACONCtupp"
],
"metanetx.reaction":[
"MNXR95381"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12788"
]
}
},
{
"id":"NI2uabcpp",
"name":"Nickel transport via ABC system (uptake, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ni2_c":1.0,
"ni2_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4456 or (STM1255 and STM1256 and STM1257 and STM1258 and STM1259)",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NI2uabcpp"
]
},
"annotation":{
"bigg.reaction":[
"NI2uabcpp"
],
"biocyc":[
"META:ABC-20-RXN",
"META:3.6.3.24-RXN"
],
"ec-code":[
"3.6.3.24"
],
"metanetx.reaction":[
"MNXR101959"
],
"rhea":[
"15557#1",
"15558#1",
"15560#1",
"15559#1"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TARTRDtpp",
"name":"D Tartrate facilitated transport periplasm ",
"metabolites":{
"tartr__D_c":1.0,
"tartr__D_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3356",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"TARTRDtpp"
]
},
"annotation":{
"bigg.reaction":[
"TARTRDtpp"
],
"metanetx.reaction":[
"MNXR104722"
],
"rhea":[
"35199",
"35200",
"35202",
"35201"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GALCTD",
"name":"Galactarate dehydratase",
"metabolites":{
"5dh4dglc_c":1.0,
"galct__D_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3250 or STM3697",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GALCTD"
]
},
"annotation":{
"bigg.reaction":[
"GALCTD"
],
"biocyc":[
"META:GALACTARDEHYDRA-RXN"
],
"ec-code":[
"4.2.1.42"
],
"kegg.reaction":[
"R05608"
],
"metanetx.reaction":[
"MNXR99955"
],
"rhea":[
"16008",
"16006",
"16005",
"16007"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03887"
]
}
},
{
"id":"SHSL1",
"name":"O-succinylhomoserine lyase (L-cysteine)",
"metabolites":{
"cys__L_c":-1.0,
"cyst__L_c":1.0,
"h_c":1.0,
"succ_c":1.0,
"suchms_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4100 or STM3624A",
"subsystem":"Methionine Metabolism",
"notes":{
"original_bigg_ids":[
"SHSL1"
]
},
"annotation":{
"bigg.reaction":[
"SHSL1"
],
"biocyc":[
"META:O-SUCCHOMOSERLYASE-RXN"
],
"ec-code":[
"2.5.1.48"
],
"kegg.reaction":[
"R03260"
],
"metanetx.reaction":[
"MNXR104380"
],
"rhea":[
"20398",
"20399",
"20400",
"20397"
],
"sabiork":[
"3081"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GALTptspp",
"name":"Galactitol transport via PEP:Pyr PTS (periplasm)",
"metabolites":{
"galt1p_c":1.0,
"galt_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3258 and STM3259 and STM3260 and STM2431 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"GALTptspp"
]
},
"annotation":{
"bigg.reaction":[
"GALTptspp"
],
"metanetx.reaction":[
"MNXR100018"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08586",
"rxn05567"
]
}
},
{
"id":"ASPt2_3pp",
"name":"L-asparate transport via proton symport (3 H) (periplasm)",
"metabolites":{
"asp__L_c":1.0,
"asp__L_p":-1.0,
"h_c":3.0,
"h_p":-3.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4325 or STM4301 or STM3599",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"ASPt2_3pp"
]
},
"annotation":{
"bigg.reaction":[
"ASPt2_3pp"
],
"metanetx.reaction":[
"MNXR96105"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10155"
]
}
},
{
"id":"FEROXBFEabcpp",
"name":"Ferrioxamine B fe transport via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"feroxBfe_c":1.0,
"feroxBfe_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0194 and STM0192 and STM0193",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FEROXBFEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FEROXBFEabcpp"
],
"metanetx.reaction":[
"MNXR99565"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SUCFUMtpp",
"name":"Succinate:fumarate antiporter (periplasm)",
"metabolites":{
"fum_c":1.0,
"fum_p":-1.0,
"succ_c":-1.0,
"succ_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4301 or STM0627 or STM4325 or STM3599",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SUCFUMtpp"
]
},
"annotation":{
"bigg.reaction":[
"SUCFUMtpp"
],
"biocyc":[
"META:TRANS-RXN-106"
],
"metanetx.reaction":[
"MNXR104633"
],
"rhea":[
"29326",
"29324",
"29323",
"29325"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10159",
"rxn09712",
"rxn09273"
]
}
},
{
"id":"SUCCt2_3pp",
"name":"Succintate transport via proton symport (3 H) (periplasm)",
"metabolites":{
"h_c":3.0,
"h_p":-3.0,
"succ_c":1.0,
"succ_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4301 or STM4325 or STM3599",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"SUCCt2_3pp"
]
},
"annotation":{
"bigg.reaction":[
"SUCCt2_3pp"
],
"biocyc":[
"META:TRANS-RXN-300"
],
"metanetx.reaction":[
"MNXR104621"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10157"
]
}
},
{
"id":"FUMt2_3pp",
"name":"Fumarate transport via proton symport (3 H) (periplasm)",
"metabolites":{
"fum_c":1.0,
"fum_p":-1.0,
"h_c":3.0,
"h_p":-3.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4325 or STM4301 or STM0627 or STM3599",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FUMt2_3pp"
]
},
"annotation":{
"bigg.reaction":[
"FUMt2_3pp"
],
"biocyc":[
"META:TRANS-RXN-299"
],
"metanetx.reaction":[
"MNXR99712"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08543",
"rxn10158"
]
}
},
{
"id":"MALt2_3pp",
"name":"Malate transport via proton symport (3 H) (periplasm)",
"metabolites":{
"h_c":3.0,
"h_p":-3.0,
"mal__L_c":1.0,
"mal__L_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4301 or STM4325 or STM3599",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"MALt2_3pp"
]
},
"annotation":{
"bigg.reaction":[
"MALt2_3pp"
],
"metanetx.reaction":[
"MNXR101371"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10156",
"rxn08866"
]
}
},
{
"id":"ALAALAD_1",
"name":"D alanine D alanine dipeptidase",
"metabolites":{
"ala__D_p":2.0,
"alaala_p":-1.0,
"h2o_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1599",
"subsystem":"Murein Recycling",
"notes":{
"original_bigg_ids":[
"ALAALAD"
]
},
"annotation":{
"bigg.reaction":[
"ALAALAD_1"
],
"biocyc":[
"META:3.4.13.22-RXN"
],
"ec-code":[
"3.4.13.22"
],
"kegg.reaction":[
"R07651"
],
"metanetx.reaction":[
"MNXR95675"
],
"rhea":[
"20662",
"20664",
"20663",
"20661"
],
"sabiork":[
"7268"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn07466"
]
}
},
{
"id":"DMSOR1pp",
"name":"Dimethyl sulfoxide reductase (Menaquinol 8) (periplasm)",
"metabolites":{
"dms_p":1.0,
"dmso_p":-1.0,
"h2o_p":1.0,
"mql8_c":-1.0,
"mqn8_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM1499 and STM1498 and STM1497 and STM1496) or (STM0964 and STM0965 and STM0966) or (STM4305_S and STM4306 and STM4307) or (STM2528 and STM2530 and STM2529)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"DMSOR1"
]
},
"annotation":{
"bigg.reaction":[
"DMSOR1pp"
],
"metanetx.reaction":[
"MNXR97530"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08355",
"rxn10129"
]
}
},
{
"id":"DMSOR2pp",
"name":"Dimethyl sulfoxide reductase (Demethylmenaquinol 8) (periplasm)",
"metabolites":{
"2dmmq8_c":1.0,
"2dmmql8_c":-1.0,
"dms_p":1.0,
"dmso_p":-1.0,
"h2o_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0964 and STM0965 and STM0966) or (STM4305_S and STM4306 and STM4307) or (STM2528 and STM2530 and STM2529)",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"DMSOR2"
]
},
"annotation":{
"bigg.reaction":[
"DMSOR2pp"
],
"metanetx.reaction":[
"MNXR97532"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08357",
"rxn10130"
]
}
},
{
"id":"NAt3pp",
"name":"Sodium transport out via proton antiport (cytoplasm to periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"na1_c":-1.0,
"na1_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0866 or STM1771 or STM1556",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"NAt3pp"
]
},
"annotation":{
"bigg.reaction":[
"NAt3pp"
],
"biocyc":[
"META:TRANS-RXN-101"
],
"metanetx.reaction":[
"MNXR101803"
],
"reactome.reaction":[
"R-DME-425983",
"R-MMU-425983",
"R-HSA-2872463",
"R-OSA-425965",
"R-SCE-426015",
"R-BTA-2872444",
"R-DME-425994",
"R-DME-426015",
"R-SPO-425983",
"R-CFA-425994",
"R-HSA-2872444",
"R-MMU-425994",
"R-HSA-426015",
"R-SSC-425983",
"R-RNO-426015",
"R-DME-2872444",
"R-ATH-426015",
"R-XTR-425983",
"R-HSA-425983",
"R-SSC-425965",
"R-DME-425965",
"R-RNO-425983",
"R-TGU-425994",
"R-MMU-425965",
"R-MMU-426015",
"R-CFA-425965",
"R-BTA-425983",
"R-SSC-425994",
"R-GGA-425994",
"R-RNO-2872444",
"R-XTR-2872444",
"R-CFA-425983",
"R-CEL-425965",
"R-TGU-425983",
"R-OSA-425983",
"R-XTR-426015",
"R-OSA-426015",
"R-ATH-425983",
"R-DRE-426015",
"R-XTR-425965",
"R-HSA-425994",
"R-SCE-425983",
"R-GGA-426015",
"R-SPO-425965",
"R-XTR-425994",
"R-GGA-425983",
"R-MMU-2872452",
"R-RNO-425965",
"R-HSA-425965",
"R-DDI-426015",
"R-TGU-425965",
"R-BTA-426015",
"R-CEL-425994",
"R-BTA-425994",
"R-BTA-425965",
"R-CEL-425983",
"R-CEL-426015",
"R-CFA-2872444",
"R-DRE-425994",
"R-MMU-2872444",
"R-RNO-425994",
"R-SCE-425965",
"R-SCE-425994",
"R-SPO-426015",
"R-SSC-426015",
"R-ATH-425965",
"R-TGU-2872444",
"R-GGA-2872444",
"R-DRE-425983",
"R-GGA-425965",
"R-SSC-2872444",
"R-TGU-426015",
"R-DRE-2872444",
"R-CFA-426015",
"R-CEL-2872444"
],
"rhea":[
"29422",
"29420",
"29421",
"29419"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08984",
"rxn05209"
]
}
},
{
"id":"EX_tag__D_e",
"name":"D Tagatose exchange",
"metabolites":{
"tag__D_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tag_D_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tag__D_e"
],
"metanetx.reaction":[
"MNXR104707"
],
"sbo":"SBO:0000627"
}
},
{
"id":"TAGtex",
"name":"D Tagatose transport via diffusion extracellular to periplasm ",
"metabolites":{
"tag__D_e":-1.0,
"tag__D_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"TAGtex"
]
},
"annotation":{
"bigg.reaction":[
"TAGtex"
],
"metanetx.reaction":[
"MNXR104707"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TAGptspp",
"name":"D Tagatose transport via PEPPyr PTS periplasm ",
"metabolites":{
"pep_c":-1.0,
"pyr_c":1.0,
"tag1p__D_c":1.0,
"tag__D_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3255 and STM3256 and STM2432",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"TAGptspp"
]
},
"annotation":{
"bigg.reaction":[
"TAGptspp"
],
"metanetx.reaction":[
"MNXR104711"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TAG1PK",
"name":"D Tagatose 1 phosphate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"tag1p__D_c":-1.0,
"tagdp__D_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1326 or STM3254",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TAG1PK"
]
},
"annotation":{
"bigg.reaction":[
"TAG1PK"
],
"metanetx.reaction":[
"MNXR104664"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FE2abcpp",
"name":"Iron (II) transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fe2_c":1.0,
"fe2_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3506 or (STM2861 and STM2862 and STM2863 and STM2864)",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"FE2abcpp"
],
"metanetx.reaction":[
"MNXR99504"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05555",
"rxn08472"
]
}
},
{
"id":"MNabc_1",
"name":"Manganese Mn2 transport via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"mn2_c":1.0,
"mn2_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2861 and STM2862 and STM2863 and STM2864",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"MN2abcpp"
]
},
"annotation":{
"bigg.reaction":[
"MNabc_1"
],
"biocyc":[
"META:3.6.3.35-RXN"
],
"ec-code":[
"3.6.3.35"
],
"metanetx.reaction":[
"MNXR101680"
],
"rhea":[
"17365#1",
"17368#1",
"17366#1",
"17367#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05149"
]
}
},
{
"id":"TETDHpp1",
"name":"Tetrathionate Dehydrogenase menaquinone 8  periplasm ",
"metabolites":{
"h_p":2.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"tet_p":-1.0,
"tsul_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1383 and STM1385 and STM1384",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TETDHpp1"
]
},
"annotation":{
"bigg.reaction":[
"TETDHpp1"
],
"metanetx.reaction":[
"MNXR104779"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TSULDHpp1",
"name":"Thiosulfate Dehydrogenase menaquinone 8  periplasm ",
"metabolites":{
"h2s_p":1.0,
"h_c":2.0,
"h_p":-2.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"so3_p":1.0,
"tsul_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2065 and STM2064 and STM2063",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TSULDHpp1"
]
},
"annotation":{
"bigg.reaction":[
"TSULDHpp1"
],
"metanetx.reaction":[
"MNXR104960"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TETDHpp2",
"name":"Tetrathionate Dehydrogenase Demethylmenaquinol 8 periplasm ",
"metabolites":{
"2dmmq8_c":1.0,
"2dmmql8_c":-1.0,
"h_p":2.0,
"tet_p":-1.0,
"tsul_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1383 and STM1385 and STM1384",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TETDHpp2"
]
},
"annotation":{
"bigg.reaction":[
"TETDHpp2"
],
"metanetx.reaction":[
"MNXR104780"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TSULDHpp2",
"name":"Thiosulfate Dehydrogenase Demethylmenaquinol 8  periplasm ",
"metabolites":{
"2dmmq8_c":1.0,
"2dmmql8_c":-1.0,
"h2s_p":1.0,
"h_c":2.0,
"h_p":-2.0,
"so3_p":1.0,
"tsul_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2065 and STM2064 and STM2063",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TSULDHpp2"
]
},
"annotation":{
"bigg.reaction":[
"TSULDHpp2"
],
"metanetx.reaction":[
"MNXR104961"
],
"sbo":"SBO:0000185"
}
},
{
"id":"4IZ5PPH",
"name":"4 Imidazolone 5 propanoate propionase",
"metabolites":{
"4izp_c":-1.0,
"h2o_c":-1.0,
"nflgln_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0787",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"4IZ5PPH"
]
},
"annotation":{
"bigg.reaction":[
"4IZ5PPH"
],
"metanetx.reaction":[
"MNXR95027"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NFLGLNH",
"name":"N Formimino L glutamate formiminohydrolase",
"metabolites":{
"frmd_c":1.0,
"glu__L_c":1.0,
"h2o_c":-1.0,
"nflgln_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0788",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"NFLGLNH"
]
},
"annotation":{
"bigg.reaction":[
"NFLGLNH"
],
"metanetx.reaction":[
"MNXR101943"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXEFEabcpp",
"name":"Ferrioxamine E fe transport via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"feroxEfe_c":1.0,
"feroxEfe_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0194 and STM0192 and STM0193",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FEROXEFEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FEROXEFEabcpp"
],
"metanetx.reaction":[
"MNXR99571"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_4abz_e",
"name":"4 Aminobenzoate exchange",
"metabolites":{
"4abz_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4abz_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4abz_e"
],
"metanetx.reaction":[
"MNXR94995"
],
"sbo":"SBO:0000627",
"seed.reaction":[
"rxn09794",
"rxn13206"
]
}
},
{
"id":"4ABZt",
"name":"4 Aminobenzoate mitochondrial transport via diffusion",
"metabolites":{
"4abz_c":-1.0,
"4abz_e":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Exchange",
"notes":{
"original_bigg_ids":[
"ABZtex"
]
},
"annotation":{
"bigg.reaction":[
"4ABZt"
],
"metanetx.reaction":[
"MNXR94995"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn09794",
"rxn13206"
]
}
},
{
"id":"TETDHpp3",
"name":"Tetrathionate Dehydrogenase ubiquinone 8  periplasm ",
"metabolites":{
"h_p":2.0,
"q8_c":1.0,
"q8h2_c":-1.0,
"tet_p":-1.0,
"tsul_p":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1383 and STM1385 and STM1384",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TETDHpp3"
]
},
"annotation":{
"bigg.reaction":[
"TETDHpp3"
],
"metanetx.reaction":[
"MNXR104781"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TSULDHpp3",
"name":"Thiosulfate Dehydrogenase ubiquinone 8  periplasm ",
"metabolites":{
"h2s_p":1.0,
"h_c":2.0,
"h_p":-2.0,
"q8_c":1.0,
"q8h2_c":-1.0,
"so3_p":1.0,
"tsul_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2065 and STM2064 and STM2063",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TSULDHpp3"
]
},
"annotation":{
"bigg.reaction":[
"TSULDHpp3"
],
"metanetx.reaction":[
"MNXR104962"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SO3R",
"name":"Sulfite reductase ",
"metabolites":{
"h2o_c":3.0,
"h2s_c":1.0,
"h_c":-5.0,
"nad_c":3.0,
"nadh_c":-3.0,
"so3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2548 and STM2549 and STM2550",
"subsystem":"Glycerophospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"SO3R"
]
},
"annotation":{
"bigg.reaction":[
"SO3R"
],
"kegg.reaction":[
"R10146"
],
"metanetx.reaction":[
"MNXR104457"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_feroxB_e",
"name":"Ferrioxamine B exchange",
"metabolites":{
"feroxB_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feroxB_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feroxB_e"
],
"metanetx.reaction":[
"MNXR142967"
],
"sbo":"SBO:0000627"
}
},
{
"id":"FEROXGFEabcpp",
"name":"Ferrioxamine G fe transport via ABC system periplasm ",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"feroxGfe_c":1.0,
"feroxGfe_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0194 and STM0192 and STM0193",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FEROXGFEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FEROXGFEabcpp"
],
"metanetx.reaction":[
"MNXR99577"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_feroxBfe_e",
"name":"Ferrioxamine B fe exchange",
"metabolites":{
"feroxBfe_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feroxBfe_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feroxBfe_e"
],
"metanetx.reaction":[
"MNXR99566"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_feroxE_e",
"name":"Ferrioxamine E exchange",
"metabolites":{
"feroxE_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feroxE_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feroxE_e"
],
"metanetx.reaction":[
"MNXR99573"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_feroxEfe_e",
"name":"Ferrioxamine E fe exchange",
"metabolites":{
"feroxEfe_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feroxEfe_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feroxEfe_e"
],
"metanetx.reaction":[
"MNXR99572"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_feroxG_e",
"name":"Ferrioxamine G exchange",
"metabolites":{
"feroxG_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feroxG_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feroxG_e"
],
"metanetx.reaction":[
"MNXR99579"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_feroxGfe_e",
"name":"Ferrioxamine G fe exchange",
"metabolites":{
"feroxGfe_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_feroxGfe_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_feroxGfe_e"
],
"metanetx.reaction":[
"MNXR142968"
],
"sbo":"SBO:0000627"
}
},
{
"id":"MG2uabcpp",
"name":"Magnesium (Mg+2) ABC transporter (ubtake, periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"mg2_c":1.0,
"mg2_p":-1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4456 or STM3763",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"MG2uabcpp"
]
},
"annotation":{
"bigg.reaction":[
"MG2uabcpp"
],
"biocyc":[
"META:TRANS-RXN-250",
"META:3.6.3.2-RXN"
],
"ec-code":[
"3.6.3.2"
],
"metanetx.reaction":[
"MNXR101505"
],
"rhea":[
"10261#1",
"10262#1",
"10260#1",
"10263#1"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08924",
"rxn10571"
]
}
},
{
"id":"UPPDC1",
"name":"Uroporphyrinogen decarboxylase (uroporphyrinogen III)",
"metabolites":{
"co2_c":4.0,
"cpppg3_c":1.0,
"h_c":-4.0,
"uppg3_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4167",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"UPPDC1"
]
},
"annotation":{
"bigg.reaction":[
"UPPDC1"
],
"biocyc":[
"META:UROGENDECARBOX-RXN"
],
"ec-code":[
"4.1.1.37"
],
"kegg.reaction":[
"R03197"
],
"metanetx.reaction":[
"MNXR105140"
],
"reactome.reaction":[
"R-GGA-421515",
"R-DME-189425",
"R-BTA-189425",
"R-SSC-189425",
"R-DDI-189425",
"R-RNO-189425",
"R-SPO-189425",
"R-OSA-189425",
"R-GGA-189425",
"R-HSA-189425",
"R-SCE-189425",
"R-MMU-189425",
"R-PFA-189425",
"R-XTR-189425",
"R-TGU-189425",
"R-CFA-189425",
"R-DRE-189425",
"R-ATH-189425"
],
"rhea":[
"19868",
"19865",
"19867",
"19866"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02288"
]
}
},
{
"id":"AIRSK",
"name":"Aminoimidazole riboside kinase",
"metabolites":{
"adp_c":1.0,
"air_c":1.0,
"airs_c":-1.0,
"atp_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4066",
"subsystem":"Purine and Pyrimidine Biosynthesis",
"notes":{
"original_bigg_ids":[
"AIRSK"
]
},
"annotation":{
"bigg.reaction":[
"AIRSK"
],
"metanetx.reaction":[
"MNXR95647"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXGFEtonex",
"name":"Ferrioxamine G fe transport via ton system extermal ",
"metabolites":{
"feroxGfe_e":-1.0,
"feroxGfe_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0364 and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"FEROXGFEtonex"
]
},
"annotation":{
"bigg.reaction":[
"FEROXGFEtonex"
],
"metanetx.reaction":[
"MNXR99578"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OA5VL_ST",
"name":"O-antigen 5 polymerase with very long chain",
"metabolites":{
"OA_ST_p":1.0,
"h_p":99.0,
"udcpdp_p":99.0,
"udcpo5_p":-100.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332 and STM0589",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"OA5VL_ST"
]
},
"annotation":{
"bigg.reaction":[
"OA5VL_ST"
],
"metanetx.reaction":[
"MNXR102094"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAO4t3pp",
"name":"O-antigen translocase",
"metabolites":{
"udcpo4_c":-1.0,
"udcpo4_p":1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM3926",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"OAO4t3pp"
]
},
"annotation":{
"bigg.reaction":[
"OAO4t3pp"
],
"metanetx.reaction":[
"MNXR102110"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FEENTERR3",
"name":"Fe-enterobactin reduction (Fe(III)-unloading)",
"metabolites":{
"enter_c":2.0,
"fe2_c":2.0,
"feenter_c":-2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEENTERR3"
]
},
"annotation":{
"bigg.reaction":[
"FEENTERR3"
],
"metanetx.reaction":[
"MNXR99545"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXBFEtex",
"name":"Ferrioxamine B fe transport via diffusion extracellular to periplasm ",
"metabolites":{
"feroxBfe_e":-1.0,
"feroxBfe_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0364",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"FEROXBFEtex"
]
},
"annotation":{
"bigg.reaction":[
"FEROXBFEtex"
],
"metanetx.reaction":[
"MNXR99566"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OAO4t3ex",
"name":"O-antigen translocase",
"metabolites":{
"udcpo4_e":1.0,
"udcpo4_p":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"OAO4t3ex"
]
},
"annotation":{
"bigg.reaction":[
"OAO4t3ex"
],
"metanetx.reaction":[
"MNXR102110"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PYDXtex",
"name":"Pyridoxal transport via diffusion (extracellular)",
"metabolites":{
"pydx_e":-1.0,
"pydx_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"PYDXtex"
]
},
"annotation":{
"bigg.reaction":[
"PYDXtex"
],
"biocyc":[
"META:TRANS-RXN0-214"
],
"metanetx.reaction":[
"MNXR103370"
],
"rhea":[
"28462",
"28465",
"28463",
"28464"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12666"
]
}
},
{
"id":"SALCHS4FER1",
"name":"Salmochelin S4 Fe III reduction Fe III unloading ",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"h_c":2.0,
"salchs4_c":2.0,
"salchs4fe_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS4FER1"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4FER1"
],
"metanetx.reaction":[
"MNXR104253"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXEFEtex",
"name":"Ferrioxamine E fe transport via diffusion extracellular to periplasm ",
"metabolites":{
"feroxEfe_e":-1.0,
"feroxEfe_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0364",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"FEROXEFEtex"
]
},
"annotation":{
"bigg.reaction":[
"FEROXEFEtex"
],
"metanetx.reaction":[
"MNXR99572"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SALCHS4FER2",
"name":"Salmochelin S4 Fe III reduction Fe III unloading ",
"metabolites":{
"fe2_c":2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0,
"salchs4_c":2.0,
"salchs4fe_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS4FER2"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4FER2"
],
"metanetx.reaction":[
"MNXR104254"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SALCHS4FER3",
"name":"Salmochelin S4 Fe III reduction Fe III unloading ",
"metabolites":{
"fe2_c":2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0,
"salchs4_c":2.0,
"salchs4fe_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS4FER3"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4FER3"
],
"metanetx.reaction":[
"MNXR104255"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PYDXtpp",
"name":"Pyridoxal import",
"metabolites":{
"pydx_c":1.0,
"pydx_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PYDXtpp"
]
},
"annotation":{
"bigg.reaction":[
"PYDXtpp"
],
"biocyc":[
"META:TRANS-RXN0-214"
],
"metanetx.reaction":[
"MNXR103370"
],
"rhea":[
"28462",
"28465",
"28463",
"28464"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12666"
]
}
},
{
"id":"PYDXNtex",
"name":"Pyridoxine transport via diffusion (extracellular)",
"metabolites":{
"pydxn_e":-1.0,
"pydxn_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"PYDXNtex"
]
},
"annotation":{
"bigg.reaction":[
"PYDXNtex"
],
"biocyc":[
"META:TRANS-RXN0-205"
],
"metanetx.reaction":[
"MNXR103364"
],
"rhea":[
"28472",
"28470",
"28473",
"28471"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13097"
]
}
},
{
"id":"PYDXNtpp",
"name":"Pyridoxine import",
"metabolites":{
"pydxn_c":1.0,
"pydxn_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"PYDXNtpp"
]
},
"annotation":{
"bigg.reaction":[
"PYDXNtpp"
],
"biocyc":[
"META:TRANS-RXN0-205"
],
"metanetx.reaction":[
"MNXR103364"
],
"rhea":[
"28472",
"28470",
"28473",
"28471"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13097"
]
}
},
{
"id":"HEXt2rpp",
"name":"Hexanoate transport via proton symport, reversible (periplasm)",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"hxa_c":1.0,
"hxa_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"HEXt2rpp"
]
},
"annotation":{
"bigg.reaction":[
"HEXt2rpp"
],
"metanetx.reaction":[
"MNXR100622"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12596",
"rxn08714"
]
}
},
{
"id":"SALCHS4FEtonex",
"name":"Salmochelin S4 Fe III transport via ton system extracellular ",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"salchs4fe_e":-1.0,
"salchs4fe_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0585 or STM2199 or STM2777) and (STM1737 and STM3158 and STM3159)",
"subsystem":"Transport Outer Membrane",
"notes":{
"original_bigg_ids":[
"SALCHS4FEtonex"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4FEtonex"
],
"metanetx.reaction":[
"MNXR104258"
],
"sbo":"SBO:0000185"
}
},
{
"id":"4HTHRtex",
"name":"4-hydroxy-L-threonine transport",
"metabolites":{
"4hthr_e":-1.0,
"4hthr_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"4HTHRtex"
]
},
"annotation":{
"bigg.reaction":[
"4HTHRtex"
],
"metanetx.reaction":[
"MNXR95025"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FEROXGtex",
"name":"Ferrioxamine G transport via diffusion extracellular to periplasm ",
"metabolites":{
"feroxG_e":-1.0,
"feroxG_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FEROXGtex"
]
},
"annotation":{
"bigg.reaction":[
"FEROXGtex"
],
"metanetx.reaction":[
"MNXR99579"
],
"sbo":"SBO:0000185"
}
},
{
"id":"4HTHRtrpp",
"name":"4-hydroxy-L-threonine transport",
"metabolites":{
"4hthr_c":1.0,
"4hthr_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3243",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"4HTHRtrpp"
]
},
"annotation":{
"bigg.reaction":[
"4HTHRtrpp"
],
"metanetx.reaction":[
"MNXR95026"
],
"sbo":"SBO:0000185"
}
},
{
"id":"4HTHRK",
"name":"4-Hydroxy-L-threonine kinase",
"metabolites":{
"4hthr_c":-1.0,
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"phthr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0003",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"4HTHRK"
]
},
"annotation":{
"bigg.reaction":[
"4HTHRK"
],
"biocyc":[
"META:RXN0-6564"
],
"ec-code":[
"2.7.1"
],
"metanetx.reaction":[
"MNXR95023"
],
"rhea":[
"28788",
"28790",
"28789",
"28787"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HISDr",
"name":"Histidase r",
"metabolites":{
"his__L_c":-1.0,
"nh4_c":1.0,
"urcan_c":1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM0791",
"subsystem":"Histidine Metabolism",
"notes":{
"original_bigg_ids":[
"HISNH4L"
]
},
"annotation":{
"bigg.reaction":[
"HISDr"
],
"biocyc":[
"META:HISTIDINE-AMMONIA-LYASE-RXN"
],
"ec-code":[
"4.3.1.3"
],
"kegg.reaction":[
"R01168"
],
"metanetx.reaction":[
"MNXR100639"
],
"reactome.reaction":[
"R-RNO-70899",
"R-DDI-70899",
"R-CFA-70899",
"R-GGA-70899",
"R-DRE-70899",
"R-TGU-70899",
"R-XTR-70899",
"R-CEL-70899",
"R-MMU-70899",
"R-OSA-70899",
"R-BTA-70899",
"R-ATH-70899",
"R-SSC-70899",
"R-HSA-70899"
],
"rhea":[
"21234",
"21235",
"21232",
"21233"
],
"sabiork":[
"11319",
"1406"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00867"
]
}
},
{
"id":"FEROXEtex",
"name":"Ferrioxamine E transport via diffusion extracellular to periplasm ",
"metabolites":{
"feroxE_e":-1.0,
"feroxE_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FEROXEtex"
]
},
"annotation":{
"bigg.reaction":[
"FEROXEtex"
],
"metanetx.reaction":[
"MNXR99573"
],
"sbo":"SBO:0000185"
}
},
{
"id":"AB6PGH",
"name":"Arbutin 6-phosphate glucohydrolase",
"metabolites":{
"arbt6p_c":-1.0,
"g6p_c":1.0,
"h2o_c":-1.0,
"hqn_c":1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM3051",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"AB6PGH"
]
},
"annotation":{
"bigg.reaction":[
"AB6PGH"
],
"ec-code":[
"3.2.1.86"
],
"metanetx.reaction":[
"MNXR95165"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08025"
]
}
},
{
"id":"SARCOX",
"name":"Sarcosine oxidase",
"metabolites":{
"fald_c":1.0,
"gly_c":1.0,
"h2o2_c":1.0,
"h2o_c":-1.0,
"o2_c":-1.0,
"sarcs_c":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM1160",
"subsystem":"Glycine and Serine Metabolism",
"notes":{
"original_bigg_ids":[
"SARCOX"
]
},
"annotation":{
"bigg.reaction":[
"SARCOX"
],
"biocyc":[
"META:SARCOX-RXN"
],
"ec-code":[
"1.5.3.1"
],
"kegg.reaction":[
"R00610"
],
"metanetx.reaction":[
"MNXR104272"
],
"rhea":[
"13315",
"13314",
"13313",
"13316"
],
"sabiork":[
"1001"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00433"
]
}
},
{
"id":"PDE1",
"name":"3',5'-cyclic-nucleotide phosphodiesterase",
"metabolites":{
"amp_c":1.0,
"camp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Nucleotide Salvage Pathway",
"notes":{
"original_bigg_ids":[
"35PDE"
]
},
"annotation":{
"bigg.reaction":[
"PDE1"
],
"biocyc":[
"META:RXN0-5038"
],
"ec-code":[
"3.1.4.53",
"3.1.4.17"
],
"kegg.reaction":[
"R00191"
],
"metanetx.reaction":[
"MNXR95886"
],
"reactome.reaction":[
"R-MMU-111955",
"R-CFA-111955",
"R-SSC-162425",
"R-DME-111962",
"R-CEL-162425",
"R-DRE-418553",
"R-TGU-111962",
"R-HSA-418553",
"R-RNO-162425",
"R-HSA-111962",
"R-HSA-111955",
"R-RNO-111962",
"R-BTA-111955",
"R-BTA-111962",
"R-SSC-111962",
"R-GGA-111955",
"R-XTR-111962",
"R-RNO-418553",
"R-GGA-418553",
"R-MMU-418553",
"R-XTR-162425",
"R-PFA-418553",
"R-BTA-418553",
"R-BTA-162425",
"R-TGU-111955",
"R-XTR-418553",
"R-CEL-111955",
"R-MMU-162425",
"R-SSC-418553",
"R-CEL-418553",
"R-CFA-111962",
"R-DRE-162425",
"R-CEL-111962",
"R-TGU-162425",
"R-DDI-418553",
"R-SSC-111955",
"R-DME-418553",
"R-XTR-111955",
"R-MMU-111962",
"R-GGA-111962",
"R-TGU-418553",
"R-DME-111955",
"R-RNO-111955",
"R-DRE-111955",
"R-DRE-111962",
"R-DDI-111955",
"R-HSA-162425",
"R-GGA-162425",
"R-CFA-162425",
"R-CFA-418553"
],
"rhea":[
"25278",
"25280",
"25277",
"25279"
],
"sabiork":[
"292"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00140"
]
}
},
{
"id":"URCN",
"name":"Urocanase",
"metabolites":{
"4izp_c":1.0,
"h2o_c":-1.0,
"urcan_c":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"",
"subsystem":"Histidine metabolism",
"notes":{
"original_bigg_ids":[
"UROCANH"
]
},
"annotation":{
"bigg.reaction":[
"URCN"
],
"biocyc":[
"META:UROCANATE-HYDRATASE-RXN"
],
"ec-code":[
"4.2.1.49"
],
"kegg.reaction":[
"R02914"
],
"metanetx.reaction":[
"MNXR105150"
],
"reactome.reaction":[
"R-SSC-70903",
"R-TGU-70903",
"R-RNO-70903",
"R-GGA-70903",
"R-HSA-70903",
"R-XTR-70903",
"R-CEL-70903",
"R-MMU-70903",
"R-DRE-70903",
"R-BTA-70903",
"R-CFA-70903"
],
"rhea":[
"13103",
"13101",
"13102",
"13104"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02085"
]
}
},
{
"id":"AADDGT",
"name":"DTDP-N-4-acetamido-4,6-dideoxy-D-galactose transferase",
"metabolites":{
"dtdp4aaddg_c":-1.0,
"dtdp_c":1.0,
"h_c":1.0,
"unagamu_c":-1.0,
"unagamuf_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3927",
"subsystem":"lipopolysaccharide biosynthesis",
"notes":{
"original_bigg_ids":[
"AADDFT"
]
},
"annotation":{
"bigg.reaction":[
"AADDGT"
],
"biocyc":[
"META:FUC4NACTRANS-RXN"
],
"ec-code":[
"2.4.1.325"
],
"metanetx.reaction":[
"MNXR95151"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08023"
]
}
},
{
"id":"ENTERHpp",
"name":"Enterobactin hydrolase",
"metabolites":{
"23dhbzs3_p":1.0,
"enter_p":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0001,
"gene_reaction_rule":"STM2776",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ENTERHpp"
]
},
"annotation":{
"bigg.reaction":[
"ENTERHpp"
],
"metanetx.reaction":[
"MNXR97939"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SALCHS4Hpp",
"name":"Salmochelin s4 hydrolase",
"metabolites":{
"h2o_p":-1.0,
"salchs2_p":1.0,
"salchs4_p":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0001,
"gene_reaction_rule":"STM2776",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS4Hpp"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4Hpp"
],
"metanetx.reaction":[
"MNXR104259"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FE3HOXabcpp",
"name":"Ferric-dicitrate transport via ABC system (periplasm)",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fe3hox_c":1.0,
"fe3hox_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0194 and STM0192 and STM0193",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FE3HOXabcpp"
]
},
"annotation":{
"bigg.reaction":[
"FE3HOXabcpp"
],
"metanetx.reaction":[
"MNXR99519"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08483"
]
}
},
{
"id":"FEOXAMR1",
"name":"Ferroxamine reductase",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"feoxam_c":-2.0,
"feoxam_un_c":2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEOXAMR1"
]
},
"annotation":{
"bigg.reaction":[
"FEOXAMR1"
],
"metanetx.reaction":[
"MNXR143097"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08511"
]
}
},
{
"id":"FEOXAMR2",
"name":"Ferroxamine reductase",
"metabolites":{
"fe2_c":2.0,
"feoxam_c":-2.0,
"feoxam_un_c":2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEOXAMR2"
]
},
"annotation":{
"bigg.reaction":[
"FEOXAMR2"
],
"metanetx.reaction":[
"MNXR143098"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08512"
]
}
},
{
"id":"FEOXAMR3",
"name":"Ferroxamine reductase",
"metabolites":{
"fe2_c":2.0,
"feoxam_c":-2.0,
"feoxam_un_c":2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEOXAMR3"
]
},
"annotation":{
"bigg.reaction":[
"FEOXAMR3"
],
"metanetx.reaction":[
"MNXR143099"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08513"
]
}
},
{
"id":"DHBSH_1",
"name":"2 3 dihydroxybenzoylserine hydrolase",
"metabolites":{
"23dhb_c":1.0,
"23dhbzs_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"ser__L_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DHBSH"
]
},
"annotation":{
"bigg.reaction":[
"DHBSH_1"
],
"metanetx.reaction":[
"MNXR97370"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08328"
]
}
},
{
"id":"SALCHS4FEHpp",
"name":"Salmochelin s4 fe3 hydrolase",
"metabolites":{
"h2o_p":-1.0,
"salchs2fe_p":1.0,
"salchs4fe_p":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0001,
"gene_reaction_rule":"STM2776",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS4FEHpp"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS4FEHpp"
],
"metanetx.reaction":[
"MNXR104252"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHBSZ3tex",
"name":"23dhbsz secretion",
"metabolites":{
"23dhbzs3_e":1.0,
"23dhbzs3_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"DHBSZ3tex"
]
},
"annotation":{
"bigg.reaction":[
"DHBSZ3tex"
],
"metanetx.reaction":[
"MNXR97374"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ALPATE160pp_1",
"name":"Apolipoprotein N acyltransferase phosphatidylethanolamine periplasm ",
"metabolites":{
"2agpe160_p":1.0,
"apolpp_p":-1.0,
"lpp_p":1.0,
"pe160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0666 and STM1377",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"ALPATE160pp"
]
},
"annotation":{
"bigg.reaction":[
"ALPATE160pp_1"
],
"metanetx.reaction":[
"MNXR95783"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHBSZ3FEexs",
"name":"23dhbsz3 Fe III sequestration",
"metabolites":{
"23dhbzs3_e":-1.0,
"fe3_e":-1.0,
"fe3dhbzs3_e":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"DHBSZ3FEexs"
]
},
"annotation":{
"bigg.reaction":[
"DHBSZ3FEexs"
],
"metanetx.reaction":[
"MNXR97372"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXBtex",
"name":"Ferrioxamine B transport via diffusion extracellular to periplasm ",
"metabolites":{
"feroxB_e":-1.0,
"feroxB_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"FEROXBtex"
]
},
"annotation":{
"bigg.reaction":[
"FEROXBtex"
],
"metanetx.reaction":[
"MNXR142967"
],
"sbo":"SBO:0000185"
}
},
{
"id":"DHBSZ3FEtonex",
"name":"23dhbsz3  Fe III import",
"metabolites":{
"fe3dhbzs3_e":-1.0,
"fe3dhbzs3_p":1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM2199 or STM0585 or STM2777) and (STM1737 and STM3159 and STM3158)",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"DHBSZ3FEtonex"
]
},
"annotation":{
"bigg.reaction":[
"DHBSZ3FEtonex"
],
"metanetx.reaction":[
"MNXR97373"
],
"sbo":"SBO:0000185"
}
},
{
"id":"ALPATG160pp_1",
"name":"Apolipoprotein N acyltransferase phosphatidylglycerol periplasm ",
"metabolites":{
"2agpg160_p":1.0,
"apolpp_p":-1.0,
"lpp_p":1.0,
"pg160_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0666 and STM1377",
"subsystem":"Unassigned",
"notes":{
"original_bigg_ids":[
"ALPATG160pp"
]
},
"annotation":{
"bigg.reaction":[
"ALPATG160pp_1"
],
"metanetx.reaction":[
"MNXR95785"
],
"sbo":"SBO:0000176"
}
},
{
"id":"CYSDS_copy2",
"name":"Cysteine Desulfhydrase",
"metabolites":{
"cys__L_c":-1.0,
"h2o_c":-1.0,
"h2s_c":1.0,
"nh4_c":1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"CYSDS",
"CYSLDS"
]
},
"annotation":{
"bigg.reaction":[
"CYSDS"
],
"biocyc":[
"META:LCYSDESULF-RXN"
],
"ec-code":[
"4.4.1.28",
"4.4.1.8",
"4.4.1.1"
],
"kegg.reaction":[
"R00782"
],
"metanetx.reaction":[
"MNXR96994"
],
"rhea":[
"24932",
"24931",
"24933",
"24934"
],
"sabiork":[
"1131"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00566"
]
}
},
{
"id":"INOSTtpp",
"name":"Myo-inositol transport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"inost_c":1.0,
"inost_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"INOSTtpp"
]
},
"annotation":{
"bigg.reaction":[
"INOSTtpp"
],
"metanetx.reaction":[
"MNXR100841"
],
"reactome.reaction":[
"R-SPO-429101",
"R-BTA-429101",
"R-OSA-429101",
"R-HSA-429101",
"R-TGU-429101",
"R-GGA-429101",
"R-MMU-429101",
"R-SCE-429101",
"R-RNO-429101",
"R-SSC-429101",
"R-DRE-429101",
"R-XTR-429101",
"R-CFA-429101",
"R-CEL-429101",
"R-ATH-429101"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05593"
]
}
},
{
"id":"DHBSZ3FEabcpp",
"name":"23dhbsz3 Fe III transport via ABC system periplasm",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"fe3dhbzs3_c":1.0,
"fe3dhbzs3_p":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"DHBSZ3FEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"DHBSZ3FEabcpp"
],
"metanetx.reaction":[
"MNXR97371"
],
"sbo":"SBO:0000185"
}
},
{
"id":"HDCAt2pp",
"name":"Hexadecanoate transport via proton symport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"hdca_c":1.0,
"hdca_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2391",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"HDCAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"HDCAt2pp"
],
"metanetx.reaction":[
"MNXR100583"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10162"
]
}
},
{
"id":"FEDHBZS3R1",
"name":"Fe3dhbzs3 Fe III reduction and offloading",
"metabolites":{
"23dhbzs3_c":2.0,
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"fe3dhbzs3_c":-2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775 or STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEDHBZS3R1"
]
},
"annotation":{
"bigg.reaction":[
"FEDHBZS3R1"
],
"metanetx.reaction":[
"MNXR99539"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXBtpp",
"name":"Ferrioxamine B facilitated transport periplasm ",
"metabolites":{
"feroxB_c":1.0,
"feroxB_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FEROXBtpp"
]
},
"annotation":{
"bigg.reaction":[
"FEROXBtpp"
],
"metanetx.reaction":[
"MNXR142967"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FEDHBZS3R2",
"name":"Fe3dhbzs3 Fe III reduction and offloading",
"metabolites":{
"23dhbzs3_c":2.0,
"fe2_c":2.0,
"fe3dhbzs3_c":-2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775 or STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEDHBZS3R2"
]
},
"annotation":{
"bigg.reaction":[
"FEDHBZS3R2"
],
"metanetx.reaction":[
"MNXR99540"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEDHBZS3R3",
"name":"Fe3dhbzs3 Fe III reduction and offloading",
"metabolites":{
"23dhbzs3_c":2.0,
"fe2_c":2.0,
"fe3dhbzs3_c":-2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775 or STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEDHBZS3R3"
]
},
"annotation":{
"bigg.reaction":[
"FEDHBZS3R3"
],
"metanetx.reaction":[
"MNXR99541"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OCDCAt2pp",
"name":"Octadecanoate transport via proton symport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ocdca_c":1.0,
"ocdca_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2392",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"OCDCAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"OCDCAt2pp"
],
"metanetx.reaction":[
"MNXR102142"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn10161"
]
}
},
{
"id":"OCDCEAt2pp",
"name":"Octadecenoate transport via proton symport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ocdcea_c":1.0,
"ocdcea_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2392",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"OCDCEAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"OCDCEAt2pp"
],
"metanetx.reaction":[
"MNXR102143"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TTDCAt2pp",
"name":"Tetradecanoate transport via proton symport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"ttdca_c":1.0,
"ttdca_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2393",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"TTDCAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"TTDCAt2pp"
],
"metanetx.reaction":[
"MNXR104971"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SALCHS2tex",
"name":"Salmochelin s2 secretion",
"metabolites":{
"salchs2_e":1.0,
"salchs2_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS2tex"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS2tex"
],
"metanetx.reaction":[
"MNXR104251"
],
"sbo":"SBO:0000185"
}
},
{
"id":"FEROXEtpp",
"name":"Ferrioxamine E facilitated transport periplasm ",
"metabolites":{
"feroxE_c":1.0,
"feroxE_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FEROXEtpp"
]
},
"annotation":{
"bigg.reaction":[
"FEROXEtpp"
],
"metanetx.reaction":[
"MNXR99573"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SALCHS2FEexs",
"name":"Salmochelin s2 Fe III sequestration",
"metabolites":{
"fe3_e":-1.0,
"salchs2_e":-1.0,
"salchs2fe_e":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"s0001",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS2FEexs"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS2FEexs"
],
"metanetx.reaction":[
"MNXR104248"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SALCHS2FEtonex",
"name":"Salmochelin s2 Fe III import",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"salchs2fe_e":-1.0,
"salchs2fe_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2777",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS2FEtonex"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS2FEtonex"
],
"metanetx.reaction":[
"MNXR104249"
],
"sbo":"SBO:0000185"
}
},
{
"id":"DDCAt2pp",
"name":"Dodecanoate transport via proton symport",
"metabolites":{
"ddca_c":1.0,
"ddca_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2393",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"DDCAt2pp"
]
},
"annotation":{
"bigg.reaction":[
"DDCAt2pp"
],
"metanetx.reaction":[
"MNXR97210"
],
"sbo":"SBO:0000185"
}
},
{
"id":"BIOMASS_iRR1083_metals",
"name":"Biomass equation from http://www.biomedcentral.com/1752-0509/3/38 including metals from iAF1260 biomass function",
"metabolites":{
"12dgr2_ST_p":-0.000188,
"5mthf_c":-0.05,
"accoa_c":-5e-05,
"adp_c":59.81,
"ala__L_c":-0.748399,
"amp_c":-0.001,
"arg__L_c":-0.130805,
"asn__L_c":-0.272689,
"asp__L_c":-0.374015,
"atp_c":-59.964348,
"ca2_c":-0.004737,
"cl_c":-0.004737,
"clpn2_ST_p":-1.4e-05,
"coa_c":-6e-06,
"cobalt2_c":-0.003158,
"colipaOA_e":-0.000937,
"ctp_c":-0.166895,
"cu2_c":-0.003158,
"cys__L_c":-0.017197,
"datp_c":-0.026137,
"dctp_c":-0.028567,
"dgtp_c":-0.028567,
"dttp_c":-0.026137,
"fad_c":-1e-05,
"fe2_c":-0.007106,
"gln__L_c":-0.200228,
"glu__L_c":-0.256058,
"gly_c":-1.498961,
"glycogen_c":-0.027476,
"gtp_c":-0.186332,
"h2o_c":-53.303945,
"h_c":58.266936,
"his__L_c":-0.067143,
"ile__L_c":-0.087361,
"k_c":-0.1776,
"leu__L_c":-0.206491,
"lys__L_c":-0.311404,
"met__L_c":-0.104726,
"mg2_c":-0.007895,
"mn2_c":-0.003158,
"mobd_c":-0.003158,
"nad_c":-0.00215,
"nadh_c":-5e-05,
"nadp_c":-0.00013,
"nadph_c":-0.0004,
"pa2_ST_p":-4e-06,
"pe2_ST_p":-0.001531,
"peptido_ST_p":-0.049404,
"pg2_ST_p":-0.00042,
"phe__L_c":-0.13874,
"pi_c":59.81,
"ppi_c":0.771532,
"pro__L_c":-0.256971,
"ps2_ST_p":-4e-06,
"ptrc_c":-0.035,
"ser__L_c":-0.317225,
"sheme_c":-0.000223,
"spmd_c":-0.007,
"succoa_c":-3e-06,
"thr__L_c":-0.349831,
"trp__L_c":-0.087887,
"tyr__L_c":-0.040246,
"udpg_c":-0.003,
"utp_c":-0.154549,
"val__L_c":-0.284577,
"zn2_c":-0.003158
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"objective_coefficient":1.0,
"subsystem":"Biomass and maintenance functions",
"notes":{
"original_bigg_ids":[
"biomass_iRR1083_metals"
]
},
"annotation":{
"bigg.reaction":[
"BIOMASS_iRR1083_metals"
],
"metanetx.reaction":[
"MNXR142702"
],
"sbo":"SBO:0000629"
}
},
{
"id":"EX_rnam_e",
"name":"N-Ribosylnicotinamide Exchange",
"metabolites":{
"rnam_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_rnam_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_rnam_e"
],
"biocyc":[
"META:TRANS-RXN0-481"
],
"metanetx.reaction":[
"MNXR104059"
],
"rhea":[
"33166",
"33165",
"33164",
"33163"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_udcpo5_e",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose-acetyl Exchange",
"metabolites":{
"udcpo5_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_udcpo5_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_udcpo5_e"
],
"metanetx.reaction":[
"MNXR102111"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_tcb_e",
"name":"Tricarballylate Exchange",
"metabolites":{
"tcb_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tcb_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tcb_e"
],
"metanetx.reaction":[
"MNXR104738"
],
"sbo":"SBO:0000627"
}
},
{
"id":"SALCHS2FEabcpp",
"name":"Salmochelin s2 Fe III transport via ABC system periplasm",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0,
"pi_c":1.0,
"salchs2fe_c":1.0,
"salchs2fe_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0594 and STM0590 and STM0592 and STM0591",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS2FEabcpp"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS2FEabcpp"
],
"metanetx.reaction":[
"MNXR104247"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_tton_e",
"name":"Trithionate Exchange",
"metabolites":{
"tton_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_tton_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_tton_e"
],
"metanetx.reaction":[
"MNXR104975"
],
"sbo":"SBO:0000627"
}
},
{
"id":"FEROXGtpp",
"name":"Ferrioxamine G facilitated transport periplasm ",
"metabolites":{
"feroxG_c":1.0,
"feroxG_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"FEROXGtpp"
]
},
"annotation":{
"bigg.reaction":[
"FEROXGtpp"
],
"metanetx.reaction":[
"MNXR99579"
],
"sbo":"SBO:0000185"
}
},
{
"id":"EX_colipaOA_e",
"name":"Membrane LPS mixture Exchange",
"metabolites":{
"colipaOA_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_colipaOA_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_colipaOA_e"
],
"metanetx.reaction":[
"MNXR142940"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_udcpo4_e",
"name":"Undecaprenyl diphosphate galactose-rhamnose-mannose-abequose Exchange",
"metabolites":{
"udcpo4_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_udcpo4_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_udcpo4_e"
],
"metanetx.reaction":[
"MNXR102110"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_4hthr_e",
"name":"4-Hydroxy-L-threonine Exchange",
"metabolites":{
"4hthr_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_4hthr_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_4hthr_e"
],
"metanetx.reaction":[
"MNXR95025"
],
"sbo":"SBO:0000627"
}
},
{
"id":"SALCHS2FER1",
"name":"Salmochelin s2 Fe III reduction and offloading",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"h_c":2.0,
"salchs2_c":2.0,
"salchs2fe_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS2FER1"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS2FER1"
],
"metanetx.reaction":[
"MNXR104244"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SALCHS2FER2",
"name":"Salmochelin s2 Fe III reduction and offloading",
"metabolites":{
"fe2_c":2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0,
"salchs2_c":2.0,
"salchs2fe_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS2FER2"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS2FER2"
],
"metanetx.reaction":[
"MNXR104245"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SALCHS2FER3",
"name":"Salmochelin s2 Fe III reduction and offloading",
"metabolites":{
"fe2_c":2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0,
"salchs2_c":2.0,
"salchs2fe_c":-2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS2FER3"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS2FER3"
],
"metanetx.reaction":[
"MNXR104246"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_23dhbzs3_e",
"name":"2-3-dihydroxybenzoylserine trimer Exchange",
"metabolites":{
"23dhbzs3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_23dhbzs3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_23dhbzs3_e"
],
"metanetx.reaction":[
"MNXR97374"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_fe3dhbzs3_e",
"name":"2-3-dihydroxybenzoylserine trimer-Fe-III Exchange",
"metabolites":{
"fe3dhbzs3_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_fe3dhbzs3_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_fe3dhbzs3_e"
],
"metanetx.reaction":[
"MNXR142959"
],
"sbo":"SBO:0000627"
}
},
{
"id":"SALCHS2H",
"name":"Salmochelin s2 hydrolase",
"metabolites":{
"h2o_c":-1.0,
"salchs1_c":1.0,
"salchs2_c":-1.0,
"salchsx_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS2H"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS2H"
],
"metanetx.reaction":[
"MNXR104250"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_drib_e",
"name":"Deoxy D Ribose exchange",
"metabolites":{
"drib_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_drib_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_drib_e"
],
"metanetx.reaction":[
"MNXR97783"
],
"sbo":"SBO:0000627"
}
},
{
"id":"SALCHS1H",
"name":"Salmochelin s1 hydrolase",
"metabolites":{
"23dhbzs_c":1.0,
"h2o_c":-1.0,
"salchs1_c":-1.0,
"salchsx_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"SALCHS1H"
]
},
"annotation":{
"bigg.reaction":[
"SALCHS1H"
],
"metanetx.reaction":[
"MNXR104243"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ENTERH",
"name":"Enterobactin hydrolase",
"metabolites":{
"23dhbzs3_c":1.0,
"enter_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775 or STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ENTERH"
]
},
"annotation":{
"bigg.reaction":[
"ENTERH"
],
"metanetx.reaction":[
"MNXR97938"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHBZS3H",
"name":"23DHBS polymer hydrolase",
"metabolites":{
"23dhbzs2_c":1.0,
"23dhbzs3_c":-1.0,
"23dhbzs_c":1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775 or STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"DHBZS3H"
]
},
"annotation":{
"bigg.reaction":[
"DHBZS3H"
],
"metanetx.reaction":[
"MNXR97376"
],
"sbo":"SBO:0000176"
}
},
{
"id":"EX_salchs2_e",
"name":"Salmochelin-S2 Exchange",
"metabolites":{
"salchs2_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_salchs2_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_salchs2_e"
],
"metanetx.reaction":[
"MNXR104251"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_salchs2fe_e",
"name":"Salmochelin-S2-Fe-III Exchange",
"metabolites":{
"salchs2fe_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_salchs2fe_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_salchs2fe_e"
],
"metanetx.reaction":[
"MNXR143067"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_guln__L_e",
"name":"L-gulonate Exchange",
"metabolites":{
"guln__L_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_guln_L_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_guln__L_e"
],
"metanetx.reaction":[
"MNXR100474"
],
"sbo":"SBO:0000627"
}
},
{
"id":"EX_dxyl_e",
"name":"1-deoxy-D-xylulose Exchange",
"metabolites":{
"dxyl_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Extracellular exchange",
"notes":{
"original_bigg_ids":[
"EX_dxyl_e"
]
},
"annotation":{
"bigg.reaction":[
"EX_dxyl_e"
],
"biocyc":[
"META:TRANS-RXN0-448"
],
"metanetx.reaction":[
"MNXR97833"
],
"rhea":[
"28449",
"28448",
"28446",
"28447"
],
"sbo":"SBO:0000627"
}
},
{
"id":"DHBZS2H",
"name":"23DHBS polymer hydrolase",
"metabolites":{
"23dhbzs2_c":-1.0,
"23dhbzs_c":2.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2775 or STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"DHBZS2H"
]
},
"annotation":{
"bigg.reaction":[
"DHBZS2H"
],
"metanetx.reaction":[
"MNXR97375"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DRIBtpp",
"name":"Deoxy D ribose transport via proton symport periplasm ",
"metabolites":{
"drib_c":1.0,
"drib_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3792",
"subsystem":"Transport Inner Membrane",
"notes":{
"original_bigg_ids":[
"DRIBtpp"
]
},
"annotation":{
"bigg.reaction":[
"DRIBtpp"
],
"metanetx.reaction":[
"MNXR97784"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12579"
]
}
},
{
"id":"FEENTERtex",
"name":"Enterochelin transport (secretion periplasm)",
"metabolites":{
"enter_e":1.0,
"enter_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3186",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ENTERtex"
]
},
"annotation":{
"bigg.reaction":[
"FEENTERtex"
],
"metanetx.reaction":[
"MNXR99548"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn08506"
]
}
},
{
"id":"ENTERGLCT1",
"name":"Glycosyl transferase",
"metabolites":{
"enter_c":-1.0,
"entermg_c":1.0,
"h_c":1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2773",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ENTERGLCT1"
]
},
"annotation":{
"bigg.reaction":[
"ENTERGLCT1"
],
"metanetx.reaction":[
"MNXR142828"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ENTERGLCT2",
"name":"Glycosyl transferase",
"metabolites":{
"entermg_c":-1.0,
"h_c":1.0,
"salchs4_c":1.0,
"udp_c":1.0,
"udpg_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2773",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"ENTERGLCT2"
]
},
"annotation":{
"bigg.reaction":[
"ENTERGLCT2"
],
"metanetx.reaction":[
"MNXR142829"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DRBK",
"name":"Deoxyribokinase",
"metabolites":{
"2dr5p_c":1.0,
"adp_c":1.0,
"atp_c":-1.0,
"drib_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3793",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DRBK"
]
},
"annotation":{
"bigg.reaction":[
"DRBK"
],
"ec-code":[
"2.7.1.15"
],
"kegg.reaction":[
"R02750"
],
"metanetx.reaction":[
"MNXR97781"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01987"
]
}
},
{
"id":"FEROXBFER1",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"feroxB_c":2.0,
"feroxBfe_c":-2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXBFER1"
]
},
"annotation":{
"bigg.reaction":[
"FEROXBFER1"
],
"metanetx.reaction":[
"MNXR143104"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXBFER2",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fe2_c":2.0,
"feroxB_c":2.0,
"feroxBfe_c":-2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXBFER2"
]
},
"annotation":{
"bigg.reaction":[
"FEROXBFER2"
],
"metanetx.reaction":[
"MNXR143105"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DRIBtex",
"name":"Deoxyribose transport via diffusion extracellular to periplasm ",
"metabolites":{
"drib_e":-1.0,
"drib_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport Outer Membrane Porin",
"notes":{
"original_bigg_ids":[
"DRIBtex"
]
},
"annotation":{
"bigg.reaction":[
"DRIBtex"
],
"metanetx.reaction":[
"MNXR97783"
],
"sbo":"SBO:0000185"
}
},
{
"id":"SCYSSL",
"name":"S-sulfo-L-cysteine sulfite lyase ",
"metabolites":{
"cys__L_c":1.0,
"gthox_c":1.0,
"gthrd_c":-2.0,
"h_c":1.0,
"scys__L_c":-1.0,
"so3_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cysteine Metabolism",
"notes":{
"original_bigg_ids":[
"SCYSSL"
]
},
"annotation":{
"bigg.reaction":[
"SCYSSL"
],
"metanetx.reaction":[
"MNXR104299"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn12682"
]
}
},
{
"id":"FEROXBFER3",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fe2_c":2.0,
"feroxB_c":2.0,
"feroxBfe_c":-2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXBFER3"
]
},
"annotation":{
"bigg.reaction":[
"FEROXBFER3"
],
"metanetx.reaction":[
"MNXR143106"
],
"sbo":"SBO:0000176"
}
},
{
"id":"SLCYSS",
"name":"O-acetyl-L-serine sulfhydrylase",
"metabolites":{
"ac_c":1.0,
"acser_c":-1.0,
"scys__L_c":1.0,
"tsul_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2440",
"notes":{
"original_bigg_ids":[
"SLCYSS"
]
},
"annotation":{
"bigg.reaction":[
"SLCYSS"
],
"biocyc":[
"META:SULFOCYS-RXN"
],
"ec-code":[
"2.5.1.47"
],
"kegg.reaction":[
"R03132"
],
"metanetx.reaction":[
"MNXR95415"
],
"rhea":[
"30891",
"30893",
"30894",
"30892"
],
"sabiork":[
"2967"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02246"
]
}
},
{
"id":"FEROXEFER1",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"feroxE_c":2.0,
"feroxEfe_c":-2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXEFER1"
]
},
"annotation":{
"bigg.reaction":[
"FEROXEFER1"
],
"metanetx.reaction":[
"MNXR99568"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXEFER2",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fe2_c":2.0,
"feroxE_c":2.0,
"feroxEfe_c":-2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXEFER2"
]
},
"annotation":{
"bigg.reaction":[
"FEROXEFER2"
],
"metanetx.reaction":[
"MNXR99569"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXEFER3",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fe2_c":2.0,
"feroxE_c":2.0,
"feroxEfe_c":-2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXEFER3"
]
},
"annotation":{
"bigg.reaction":[
"FEROXEFER3"
],
"metanetx.reaction":[
"MNXR99570"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXGFER1",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"feroxG_c":2.0,
"feroxGfe_c":-2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXGFER1"
]
},
"annotation":{
"bigg.reaction":[
"FEROXGFER1"
],
"metanetx.reaction":[
"MNXR99574"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEROXGFER2",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fe2_c":2.0,
"feroxG_c":2.0,
"feroxGfe_c":-2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXGFER2"
]
},
"annotation":{
"bigg.reaction":[
"FEROXGFER2"
],
"metanetx.reaction":[
"MNXR99575"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GTHPi",
"name":"Glutathione peridoxase",
"metabolites":{
"gthox_c":1.0,
"gthrd_c":-2.0,
"h2o2_c":-1.0,
"h2o_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1341",
"notes":{
"original_bigg_ids":[
"GSHPO"
]
},
"annotation":{
"bigg.reaction":[
"GTHPi"
],
"biocyc":[
"META:GLUTATHIONE-PEROXIDASE-RXN"
],
"ec-code":[
"1.11.1.9"
],
"kegg.reaction":[
"R00274"
],
"metanetx.reaction":[
"MNXR100446"
],
"reactome.reaction":[
"R-PFA-3341397",
"R-CFA-71676",
"R-SPO-71676",
"R-SPO-3341397",
"R-MMU-71676",
"R-RNO-3341277",
"R-SPO-3341277",
"R-HSA-3341397",
"R-MMU-3343700",
"R-SPO-3323013",
"R-RNO-3323013",
"R-SCE-3341277",
"R-DRE-3341277",
"R-GGA-3341397",
"R-GGA-71676",
"R-CEL-3343700",
"R-SCE-3341397",
"R-CEL-3323013",
"R-GGA-3341277",
"R-GGA-3323013",
"R-BTA-3341397",
"R-CEL-3341277",
"R-CEL-3341397",
"R-CFA-3341397",
"R-CFA-3343700",
"R-SCE-3323013",
"R-XTR-3341397",
"R-DRE-3343700",
"R-CEL-71676",
"R-RNO-3343700",
"R-TGU-71676",
"R-XTR-3341277",
"R-CFA-3341277",
"R-CFA-3323013",
"R-HSA-71676",
"R-RNO-71676",
"R-TGU-3341397",
"R-PFA-71676",
"R-BTA-3343700",
"R-MMU-3341277",
"R-TGU-3323013",
"R-RNO-3341397",
"R-XTR-3343700",
"R-SSC-3341277",
"R-PFA-3341277",
"R-HSA-3341277",
"R-MMU-3323013",
"R-HSA-3323013",
"R-DRE-3341397",
"R-BTA-3341277",
"R-PFA-3323013",
"R-HSA-3343700",
"R-SCE-71676",
"R-MMU-3341397"
],
"rhea":[
"16833",
"16836",
"16834",
"16835"
],
"sabiork":[
"376"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00205"
]
}
},
{
"id":"FEROXGFER3",
"name":"Ferrioxamine Fe III reduction and offloading",
"metabolites":{
"fe2_c":2.0,
"feroxG_c":2.0,
"feroxGfe_c":-2.0,
"h_c":2.0,
"rbflvrd_c":-1.0,
"ribflv_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3979",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEROXGFER3"
]
},
"annotation":{
"bigg.reaction":[
"FEROXGFER3"
],
"metanetx.reaction":[
"MNXR99576"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GULNLtex",
"name":"L-gulonate transport",
"metabolites":{
"guln__L_e":-1.0,
"guln__L_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"GULNLtex"
]
},
"annotation":{
"bigg.reaction":[
"GULNLtex"
],
"metanetx.reaction":[
"MNXR100474"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GULNLtpp",
"name":"L-gulonate transport",
"metabolites":{
"guln__L_c":1.0,
"guln__L_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"GULNLtpp"
]
},
"annotation":{
"bigg.reaction":[
"GULNLtpp"
],
"metanetx.reaction":[
"MNXR100475"
],
"sbo":"SBO:0000185"
}
},
{
"id":"GULNLR",
"name":"L-gulonate reductase",
"metabolites":{
"fruur_c":1.0,
"guln__L_c":-1.0,
"nad_c":-2.0,
"nadh_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate carbon metabolism",
"notes":{
"original_bigg_ids":[
"GULNLR"
]
},
"annotation":{
"bigg.reaction":[
"GULNLR"
],
"ec-code":[
"1.1.1.380"
],
"metanetx.reaction":[
"MNXR100473"
],
"sbo":"SBO:0000176"
}
},
{
"id":"HHDDI",
"name":"2-hydroxyhepta-2,4-diene-1,7-dioate isomerase",
"metabolites":{
"2hh24dd_c":-1.0,
"2ohed_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1101",
"notes":{
"original_bigg_ids":[
"HHDDI"
]
},
"annotation":{
"bigg.reaction":[
"HHDDI"
],
"metanetx.reaction":[
"MNXR143163"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DXYLUDtex",
"name":"1-deoxy-d-xyluose transport",
"metabolites":{
"dxyl_e":-1.0,
"dxyl_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0320 or STM0999 or STM1473 or STM2267",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"DXYLUDtex"
]
},
"annotation":{
"bigg.reaction":[
"DXYLUDtex"
],
"biocyc":[
"META:TRANS-RXN0-448"
],
"metanetx.reaction":[
"MNXR97833"
],
"rhea":[
"28449",
"28448",
"28446",
"28447"
],
"sbo":"SBO:0000185"
}
},
{
"id":"DXYLUDtpp",
"name":"1-deoxy-d-xyluose transport",
"metabolites":{
"dxyl_c":1.0,
"dxyl_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"DXYLUDtpp"
]
},
"annotation":{
"bigg.reaction":[
"DXYLUDtpp"
],
"metanetx.reaction":[
"MNXR97834"
],
"sbo":"SBO:0000185"
}
},
{
"id":"MUREINLPPTP",
"name":"L,D-transpeptidase",
"metabolites":{
"ala__D_p":1.0,
"lpp_p":-1.0,
"murein5p5p_p":-1.0,
"murein_lpp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0837 or STM1215 or STM1375",
"subsystem":"Murein lpp biosynthesis",
"notes":{
"original_bigg_ids":[
"MUREINLPPTP"
]
},
"annotation":{
"bigg.reaction":[
"MUREINLPPTP"
],
"metanetx.reaction":[
"MNXR101767"
],
"sbo":"SBO:0000176"
}
},
{
"id":"INOSR",
"name":"Ketoinositol reductase",
"metabolites":{
"2ins_c":1.0,
"h_c":1.0,
"inost_c":-1.0,
"nadp_c":-1.0,
"nadph_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4433 or STM4425",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"INOSR"
]
},
"annotation":{
"bigg.reaction":[
"INOSR"
],
"metanetx.reaction":[
"MNXR100838"
],
"sbo":"SBO:0000176"
}
},
{
"id":"APOLPPS",
"name":"Lpp signal peptidase - murein",
"metabolites":{
"apolpp_p":1.0,
"diglyceride_prolpp_c":-1.0,
"h2o_c":-1.0,
"lpp_sp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0047",
"subsystem":"Murein lpp biosynthesis",
"notes":{
"original_bigg_ids":[
"APOLPPS"
]
},
"annotation":{
"bigg.reaction":[
"APOLPPS"
],
"metanetx.reaction":[
"MNXR95890"
],
"sbo":"SBO:0000185"
}
},
{
"id":"PROLPPOATPE160",
"name":"O-acyl Transferase - murein",
"metabolites":{
"2agpe160_c":1.0,
"diglyceride_prolpp_c":1.0,
"glyceryl_prolpp_c":-1.0,
"pe160_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein lpp biosynthesis",
"notes":{
"original_bigg_ids":[
"PROLPPOATPE160"
]
},
"annotation":{
"bigg.reaction":[
"PROLPPOATPE160"
],
"metanetx.reaction":[
"MNXR103195"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PROLPPOATPG160",
"name":"O-acyl Transferase - murein",
"metabolites":{
"2agpg160_c":1.0,
"diglyceride_prolpp_c":1.0,
"glyceryl_prolpp_c":-1.0,
"pg160_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Murein lpp biosynthesis",
"notes":{
"original_bigg_ids":[
"PROLPPOATPG160"
]
},
"annotation":{
"bigg.reaction":[
"PROLPPOATPG160"
],
"metanetx.reaction":[
"MNXR103196"
],
"sbo":"SBO:0000176"
}
},
{
"id":"MMSAD3",
"name":"Methylmalonate-semialdehyde dehydrogenase (malonic semialdehyde)",
"metabolites":{
"accoa_c":1.0,
"co2_c":1.0,
"coa_c":-1.0,
"msa_c":-1.0,
"nad_c":-1.0,
"nadh_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4421",
"notes":{
"original_bigg_ids":[
"MMSAD3"
]
},
"annotation":{
"bigg.reaction":[
"MMSAD3"
],
"biocyc":[
"META:RXN-2902"
],
"ec-code":[
"1.2.1",
"1.2.1.18",
"1.2.1.27"
],
"kegg.reaction":[
"R00705"
],
"metanetx.reaction":[
"MNXR101665"
],
"rhea":[
"22994",
"22993",
"22992",
"22995"
],
"sabiork":[
"1081"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00501"
]
}
},
{
"id":"PROLPPGT160",
"name":"Glyceryl Transferase - murein",
"metabolites":{
"2agpg160_c":1.0,
"glyceryl_prolpp_c":1.0,
"pg160_c":-1.0,
"prolpp_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3002",
"subsystem":"Murein lpp biosynthesis",
"notes":{
"original_bigg_ids":[
"PROLPPGT160"
]
},
"annotation":{
"bigg.reaction":[
"PROLPPGT160"
],
"metanetx.reaction":[
"MNXR103194"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DMBZIDS",
"name":"DMB synthase",
"metabolites":{
"dmbzid_c":1.0,
"ribflv_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2016",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"DMBZIDS"
]
},
"annotation":{
"bigg.reaction":[
"DMBZIDS"
],
"kegg.reaction":[
"R01734"
],
"metanetx.reaction":[
"MNXR97515"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01272"
]
}
},
{
"id":"2HH24DDH1",
"name":"2hh24dd hydratase",
"metabolites":{
"24dhhed_c":1.0,
"2hh24dd_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1105",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"2HH24DDH1"
]
},
"annotation":{
"bigg.reaction":[
"2HH24DDH1"
],
"metanetx.reaction":[
"MNXR137939"
],
"sbo":"SBO:0000176"
}
},
{
"id":"GALCTND",
"name":"Galactonate dehydratase",
"metabolites":{
"2dh3dgal_c":1.0,
"galctn__D_c":-1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3828",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"GALCTND"
]
},
"annotation":{
"bigg.reaction":[
"GALCTND"
],
"biocyc":[
"META:GALACTONDEHYDRAT-RXN"
],
"ec-code":[
"4.2.1.140",
"4.2.1.6"
],
"kegg.reaction":[
"R03033"
],
"metanetx.reaction":[
"MNXR99957"
],
"rhea":[
"18651",
"18652",
"18649",
"18650"
],
"sabiork":[
"2882"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02173"
]
}
},
{
"id":"DDPGALA",
"name":"2-dehydro-3-deoxy-6-phosphogalactonate aldolase",
"metabolites":{
"2dh3dgal6p_c":-1.0,
"g3p_c":1.0,
"pyr_c":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DDPGALA"
]
},
"annotation":{
"bigg.reaction":[
"DDPGALA"
],
"biocyc":[
"META:DEHYDDEOXPHOSGALACT-ALDOL-RXN"
],
"ec-code":[
"4.1.2.21",
"4.1.2.55"
],
"kegg.reaction":[
"R01064"
],
"metanetx.reaction":[
"MNXR97220"
],
"rhea":[
"24464",
"24466",
"24465",
"24467"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn00783"
]
}
},
{
"id":"FOAMtrpp",
"name":"Formamide transport",
"metabolites":{
"frmd_c":-1.0,
"frmd_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport, Inner Membrane",
"notes":{
"original_bigg_ids":[
"FOAMtrpp"
]
},
"annotation":{
"bigg.reaction":[
"FOAMtrpp"
],
"metanetx.reaction":[
"MNXR99611"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn13708"
]
}
},
{
"id":"CHITPH",
"name":"Chitobiose-6-phosphate hydrolase",
"metabolites":{
"acgam6p_c":1.0,
"acgam_c":1.0,
"chit6p_c":-1.0,
"h2o_c":-1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM1316",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"CHITPH"
]
},
"annotation":{
"bigg.reaction":[
"CHITPH"
],
"metanetx.reaction":[
"MNXR96671"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEENTERR1",
"name":"Fe-enterobactin reduction (Fe(III)-unloading)",
"metabolites":{
"enter_c":2.0,
"fad_c":1.0,
"fadh2_c":-1.0,
"fe2_c":2.0,
"feenter_c":-2.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEENTERR1"
]
},
"annotation":{
"bigg.reaction":[
"FEENTERR1"
],
"metanetx.reaction":[
"MNXR99543"
],
"sbo":"SBO:0000176"
}
},
{
"id":"FEENTERR2",
"name":"Fe-enterobactin reduction (Fe(III)-unloading)",
"metabolites":{
"enter_c":2.0,
"fe2_c":2.0,
"feenter_c":-2.0,
"fmn_c":1.0,
"fmnh2_c":-1.0,
"h_c":2.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0586",
"subsystem":"Inorganic Ion Transport and Metabolism",
"notes":{
"original_bigg_ids":[
"FEENTERR2"
]
},
"annotation":{
"bigg.reaction":[
"FEENTERR2"
],
"metanetx.reaction":[
"MNXR99544"
],
"sbo":"SBO:0000176"
}
},
{
"id":"D5KGK",
"name":"2-Deoxy-5-Keto-D-gluconate kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"d5kg_c":-1.0,
"d5kgp_c":1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4420",
"subsystem":"Alternate Carbon metabolism",
"notes":{
"original_bigg_ids":[
"D5KGK"
]
},
"annotation":{
"bigg.reaction":[
"D5KGK"
],
"biocyc":[
"META:5-DEHYDRO-2-DEOXYGLUCONOKINASE-RXN"
],
"ec-code":[
"2.7.1.92"
],
"kegg.reaction":[
"R05661"
],
"metanetx.reaction":[
"MNXR97071"
],
"rhea":[
"13500",
"13498",
"13499",
"13497"
],
"sbo":"SBO:0000176"
}
},
{
"id":"D5KGPA",
"name":"2-Deoxy-5-keto-D-gluconate 6-phosphate aldolase",
"metabolites":{
"d5kgp_c":-1.0,
"dhap_c":1.0,
"msa_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Alternate Carbon metabolism",
"notes":{
"original_bigg_ids":[
"D5KGPA"
]
},
"annotation":{
"bigg.reaction":[
"D5KGPA"
],
"biocyc":[
"META:4.1.2.29-RXN"
],
"ec-code":[
"4.1.2.29"
],
"kegg.reaction":[
"R05378"
],
"metanetx.reaction":[
"MNXR97072"
],
"rhea":[
"13177",
"13179",
"13178",
"13180"
],
"sbo":"SBO:0000176"
}
},
{
"id":"DHEDAA",
"name":"2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase",
"metabolites":{
"24dhhed_c":-1.0,
"pyr_c":1.0,
"sucsal_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1106 and STM2289",
"subsystem":"Alternate Carbon metabolism",
"notes":{
"original_bigg_ids":[
"DHEDAA"
]
},
"annotation":{
"bigg.reaction":[
"DHEDAA"
],
"biocyc":[
"META:RXN-14146"
],
"ec-code":[
"4.1.2.52",
"4.1.2"
],
"kegg.reaction":[
"R01647"
],
"metanetx.reaction":[
"MNXR138233"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01203"
]
}
},
{
"id":"DKDID",
"name":"D-2,3-Diketo 4-deoxy-epi-inositol dehydratase",
"metabolites":{
"d5kg_c":1.0,
"dkdi_c":-1.0,
"h2o_c":-1.0,
"h_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"notes":{
"original_bigg_ids":[
"DKDID"
]
},
"annotation":{
"bigg.reaction":[
"DKDID"
],
"biocyc":[
"META:R503-RXN"
],
"ec-code":[
"3.7.1"
],
"metanetx.reaction":[
"MNXR138244"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn03931"
]
}
},
{
"id":"2INSD",
"name":"2-Inosose dehydratase",
"metabolites":{
"2ins_c":-1.0,
"dkdi_c":1.0,
"h2o_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4424_S",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"2INSD"
]
},
"annotation":{
"bigg.reaction":[
"2INSD"
],
"biocyc":[
"META:MYO-INOSOSE-2-DEHYDRATASE-RXN"
],
"ec-code":[
"4.2.1.44"
],
"kegg.reaction":[
"R02782",
"R05659"
],
"metanetx.reaction":[
"MNXR137940"
],
"rhea":[
"14065",
"14067",
"14068",
"14066"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02007"
]
}
},
{
"id":"DTARTD",
"name":"D(-)-tartrate dehydratase",
"metabolites":{
"h2o_c":1.0,
"oaa_c":1.0,
"tartr__D_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2949",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"DTARTD"
]
},
"annotation":{
"bigg.reaction":[
"DTARTD"
],
"biocyc":[
"META:D--TARTRATE-DEHYDRATASE-RXN"
],
"ec-code":[
"4.2.1.81"
],
"kegg.reaction":[
"R00340"
],
"metanetx.reaction":[
"MNXR97802"
],
"rhea":[
"18289",
"18291",
"18290",
"18292"
],
"sabiork":[
"820"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NMNR",
"name":"Nmn hydrolysis",
"metabolites":{
"h2o_e":-1.0,
"nmn_e":-1.0,
"pi_e":1.0,
"rnam_e":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2949",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NMNR"
]
},
"annotation":{
"bigg.reaction":[
"NMNR"
],
"biocyc":[
"META:RXN-5841"
],
"ec-code":[
"3.1.3.5",
"3.1.3.-"
],
"kegg.reaction":[
"R02323"
],
"metanetx.reaction":[
"MNXR101970"
],
"reactome.reaction":[
"R-TGU-8940074",
"R-RNO-8940074",
"R-DME-8940074",
"R-DRE-8940074",
"R-CFA-8940074",
"R-GGA-8940074",
"R-XTR-8940074",
"R-BTA-8940074",
"R-HSA-8940074",
"R-SSC-8940074",
"R-MMU-8940074"
],
"rhea":[
"30816",
"30818",
"30817",
"30815"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01670"
]
}
},
{
"id":"RNMK",
"name":"Ribosylnicotinamide kinase",
"metabolites":{
"adp_c":1.0,
"atp_c":-1.0,
"h_c":1.0,
"nmn_c":1.0,
"rnam_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4580_S",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"RNMK"
]
},
"annotation":{
"bigg.reaction":[
"RNMK"
],
"biocyc":[
"META:RIBOSYLNICOTINAMIDE-KINASE-RXN"
],
"ec-code":[
"2.7.1.22"
],
"kegg.reaction":[
"R02324"
],
"metanetx.reaction":[
"MNXR104069"
],
"reactome.reaction":[
"R-SSC-8869633",
"R-BTA-8869627",
"R-SSC-8869627",
"R-BTA-8869633",
"R-RNO-8869627",
"R-DME-8869633",
"R-DME-8869627",
"R-HSA-8869627",
"R-RNO-8869633",
"R-TGU-8869627",
"R-MMU-8869627",
"R-CFA-8869633",
"R-HSA-8869633",
"R-DRE-8869627",
"R-TGU-8869633",
"R-MMU-8869633",
"R-GGA-8869627",
"R-DRE-8869633",
"R-SPO-8869633",
"R-XTR-8869633",
"R-GGA-8869633",
"R-SPO-8869627"
],
"rhea":[
"14018",
"14017",
"14019",
"14020"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn01671"
]
}
},
{
"id":"OACT",
"name":"O-antigen Acetyl-Transferase",
"metabolites":{
"accoa_c":-1.0,
"coa_c":1.0,
"udcpo4_c":-1.0,
"udcpo5_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2232",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"OACT"
]
},
"annotation":{
"bigg.reaction":[
"OACT"
],
"metanetx.reaction":[
"MNXR102103"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPAT",
"name":"Abequosyl transferase",
"metabolites":{
"cdp_c":1.0,
"cdpabeq_c":-1.0,
"h_c":1.0,
"udcpgrm_c":-1.0,
"udcpo4_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2087",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPAT"
]
},
"annotation":{
"bigg.reaction":[
"UDCPAT"
],
"metanetx.reaction":[
"MNXR102108"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPMT",
"name":"Mannosyl transferase",
"metabolites":{
"gdp_c":1.0,
"gdpmann_c":-1.0,
"h_c":1.0,
"udcpgr_c":-1.0,
"udcpgrm_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2086",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPMT"
]
},
"annotation":{
"bigg.reaction":[
"UDCPMT"
],
"metanetx.reaction":[
"MNXR102186"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPRT",
"name":"Rhamnosyl transferase",
"metabolites":{
"dtdp_c":1.0,
"dtdprmn_c":-1.0,
"h_c":1.0,
"udcpg_c":-1.0,
"udcpgr_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2085",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPRT"
]
},
"annotation":{
"bigg.reaction":[
"UDCPRT"
],
"metanetx.reaction":[
"MNXR143421"
],
"sbo":"SBO:0000176"
}
},
{
"id":"UDCPGT",
"name":"Undecaprenol-phosphate galactosephosphotransferase",
"metabolites":{
"h_c":-2.0,
"udcpg_c":1.0,
"udcpp_c":-1.0,
"udpgal_c":-1.0,
"ump_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2082",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UDCPGT"
]
},
"annotation":{
"bigg.reaction":[
"UDCPGT"
],
"metanetx.reaction":[
"MNXR143420"
],
"sbo":"SBO:0000176"
}
},
{
"id":"TCBO",
"name":"Tricarballylate oxidase",
"metabolites":{
"acon_C_c":1.0,
"q8_c":-1.0,
"q8h2_c":1.0,
"tcb_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0690 and STM0691",
"subsystem":"Alternate Carbon Metabolism",
"notes":{
"original_bigg_ids":[
"TCBO"
]
},
"annotation":{
"bigg.reaction":[
"TCBO"
],
"metanetx.reaction":[
"MNXR104737"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn12500"
]
}
},
{
"id":"GLYBtex_copy2",
"name":"Glycine betaine transport via diffusion (extracellular to periplasm)",
"metabolites":{
"glyb_e":-1.0,
"glyb_p":1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"GLYBtex",
"GLYBt6ex"
]
},
"annotation":{
"bigg.reaction":[
"GLYBtex"
],
"biocyc":[
"META:TRANS-RXN0-490"
],
"metanetx.reaction":[
"MNXR100317"
],
"reactome.reaction":[
"R-HSA-6797957"
],
"rhea":[
"28945",
"28944",
"28946",
"28943"
],
"sabiork":[
"11693"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn08639",
"rxn12430"
]
}
},
{
"id":"GLYBt2pp",
"name":"Glycine betaine transport via proton symport (periplasm)",
"metabolites":{
"glyb_c":1.0,
"glyb_p":-1.0,
"h_c":1.0,
"h_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM4290",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"GLYBt6pp"
]
},
"annotation":{
"bigg.reaction":[
"GLYBt2pp"
],
"biocyc":[
"META:TRANS-RXN-29A"
],
"metanetx.reaction":[
"MNXR100315"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05579",
"rxn08638"
]
}
},
{
"id":"CHITOBex",
"name":"Chitobiose transport into periplasm",
"metabolites":{
"chitob_e":-1.0,
"chitob_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"CHITOBex"
]
},
"annotation":{
"bigg.reaction":[
"CHITOBex"
],
"biocyc":[
"META:TRANS-RXN0-445"
],
"metanetx.reaction":[
"MNXR96716"
],
"rhea":[
"35051",
"35054",
"35052",
"35053"
],
"sbo":"SBO:0000185"
}
},
{
"id":"CHITOBpts",
"name":"Chitobiose transport via PTS",
"metabolites":{
"chit6p_c":1.0,
"chitob_p":-1.0,
"pep_c":-1.0,
"pyr_c":1.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM1314 and STM1312 and STM1313 and STM2431 and STM2432",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"CHITOBpts"
]
},
"annotation":{
"bigg.reaction":[
"CHITOBpts"
],
"metanetx.reaction":[
"MNXR96715"
],
"sbo":"SBO:0000185"
}
},
{
"id":"RNAMtex",
"name":"Nicotinamide riboside transport into periplasm",
"metabolites":{
"rnam_e":-1.0,
"rnam_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"RNAMtex"
]
},
"annotation":{
"bigg.reaction":[
"RNAMtex"
],
"biocyc":[
"META:TRANS-RXN0-481"
],
"metanetx.reaction":[
"MNXR104059"
],
"rhea":[
"33166",
"33165",
"33164",
"33163"
],
"sbo":"SBO:0000185"
}
},
{
"id":"RNAMtpp",
"name":"Nicotinamide riboside transport",
"metabolites":{
"rnam_c":1.0,
"rnam_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0757",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"RNAMtpp"
]
},
"annotation":{
"bigg.reaction":[
"RNAMtpp"
],
"biocyc":[
"META:TRANS-RXN0-481"
],
"metanetx.reaction":[
"MNXR104059"
],
"rhea":[
"33166",
"33165",
"33164",
"33163"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OAO5t3ex",
"name":"O-antigen unit (O5) translocase",
"metabolites":{
"udcpo5_e":1.0,
"udcpo5_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"OAO5t3ex"
]
},
"annotation":{
"bigg.reaction":[
"OAO5t3ex"
],
"metanetx.reaction":[
"MNXR102111"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OAO5t3pp",
"name":"O-antigen unit (O5) translocase",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"udcpo5_c":-1.0,
"udcpo5_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3926",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"OAO5t3pp"
]
},
"annotation":{
"bigg.reaction":[
"OAO5t3pp"
],
"metanetx.reaction":[
"MNXR102112"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TCBt2pp",
"name":"Tricarballylate transport in via proton symport",
"metabolites":{
"h_c":1.0,
"h_p":-1.0,
"tcb_c":1.0,
"tcb_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0689",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"TCBt2pp"
]
},
"annotation":{
"bigg.reaction":[
"TCBt2pp"
],
"metanetx.reaction":[
"MNXR104739"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn12588"
]
}
},
{
"id":"TCBt2ex",
"name":"Tricarballylate transport into periplasm",
"metabolites":{
"tcb_e":-1.0,
"tcb_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"TCBt2ex"
]
},
"annotation":{
"bigg.reaction":[
"TCBt2ex"
],
"metanetx.reaction":[
"MNXR104738"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TTONR1pp",
"name":"Trithionate Reductase",
"metabolites":{
"h_c":4.0,
"mql8_c":-1.0,
"mqn8_c":1.0,
"so3_p":1.0,
"tsul_p":1.0,
"tton_p":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1383 and STM1384 and STM1385",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TTONR1pp"
]
},
"annotation":{
"bigg.reaction":[
"TTONR1pp"
],
"metanetx.reaction":[
"MNXR104973"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TTONtex",
"name":"Trithionate transport",
"metabolites":{
"tton_e":-1.0,
"tton_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"TTONtex"
]
},
"annotation":{
"bigg.reaction":[
"TTONtex"
],
"metanetx.reaction":[
"MNXR104975"
],
"sbo":"SBO:0000185"
}
},
{
"id":"TTONR2pp",
"name":"Trithionate Reductase",
"metabolites":{
"h_c":4.0,
"q8_c":1.0,
"q8h2_c":-1.0,
"so3_e":1.0,
"tsul_e":1.0,
"tton_e":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1383 and STM1384 and STM1385",
"subsystem":"Oxidative Phosphorylation",
"notes":{
"original_bigg_ids":[
"TTONR2pp"
]
},
"annotation":{
"bigg.reaction":[
"TTONR2pp"
],
"metanetx.reaction":[
"MNXR104974"
],
"sbo":"SBO:0000185"
}
},
{
"id":"LEUt4rpp",
"name":"L-leucine transport in via sodium symport",
"metabolites":{
"leu__L_c":1.0,
"leu__L_p":-1.0,
"na1_c":1.0,
"na1_p":-1.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM0399",
"subsystem":"Transport",
"notes":{
"original_bigg_ids":[
"LEUt4rpp"
]
},
"annotation":{
"bigg.reaction":[
"LEUt4rpp"
],
"biocyc":[
"META:TRANS-RXN-126B"
],
"metanetx.reaction":[
"MNXR101056"
],
"rhea":[
"29264",
"29263",
"29265",
"29266"
],
"sbo":"SBO:0000185",
"seed.reaction":[
"rxn05240"
]
}
},
{
"id":"UPLA4NT",
"name":"Undecaprenyl phosphate 4-amino-4-deoxy L-arabinose synthase",
"metabolites":{
"uLa4n_c":1.0,
"udcpp_c":-1.0,
"udpLa4n_c":-1.0,
"udp_c":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2298",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"UPLA4NT"
]
},
"annotation":{
"bigg.reaction":[
"UPLA4NT"
],
"metanetx.reaction":[
"MNXR105134"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PSUDS",
"name":"Pseudouridylate synthase",
"metabolites":{
"h2o_c":1.0,
"h_c":-2.0,
"psd5p_c":1.0,
"r5p_c":-1.0,
"ura_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2662",
"subsystem":"Translation",
"notes":{
"original_bigg_ids":[
"PSUDS"
]
},
"annotation":{
"bigg.reaction":[
"PSUDS"
],
"metanetx.reaction":[
"MNXR103310"
],
"sbo":"SBO:0000176"
}
},
{
"id":"PFOR",
"name":"Pyruvate flavodoxin oxidoreductase",
"metabolites":{
"accoa_c":1.0,
"co2_c":1.0,
"coa_c":-1.0,
"fldox_c":-1.0,
"fldrd_c":1.0,
"h_c":-1.0,
"pyr_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"(STM0694 and STM1651) or (STM3045 and STM1651)",
"subsystem":"Pyruvate Metabolism",
"notes":{
"original_bigg_ids":[
"PFOR"
]
},
"annotation":{
"bigg.reaction":[
"PFOR"
],
"biocyc":[
"META:PYFLAVOXRE-RXN"
],
"ec-code":[
"1.2.7.-",
"1.2.7.1"
],
"kegg.reaction":[
"R10866"
],
"metanetx.reaction":[
"MNXR102515"
],
"sbo":"SBO:0000176"
}
},
{
"id":"NNDMBRT",
"name":"Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase",
"metabolites":{
"5prdmbz_c":1.0,
"dmbzid_c":-1.0,
"h_c":1.0,
"nac_c":1.0,
"nicrnt_c":-1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM2016 or STM1221",
"subsystem":"Cofactor and Prosthetic Group Biosynthesis",
"notes":{
"original_bigg_ids":[
"NNDMBRT"
]
},
"annotation":{
"bigg.reaction":[
"NNDMBRT"
],
"biocyc":[
"META:DMBPPRIBOSYLTRANS-RXN"
],
"ec-code":[
"2.4.2.21"
],
"kegg.reaction":[
"R04148"
],
"metanetx.reaction":[
"MNXR101979"
],
"rhea":[
"11196",
"11197",
"11199",
"11198"
],
"sbo":"SBO:0000176",
"seed.reaction":[
"rxn02897"
]
}
},
{
"id":"BIOMASS_iRR1083",
"name":"Biomass equation from http://www.biomedcentral.com/1752-0509/3/38",
"metabolites":{
"12dgr2_ST_p":-0.000188,
"5mthf_c":-0.05,
"accoa_c":-5e-05,
"adp_c":59.81,
"ala__L_c":-0.748399,
"amp_c":-0.001,
"arg__L_c":-0.130805,
"asn__L_c":-0.272689,
"asp__L_c":-0.374015,
"atp_c":-59.964348,
"clpn2_ST_p":-1.4e-05,
"coa_c":-6e-06,
"colipaOA_e":-0.000937,
"ctp_c":-0.166895,
"cys__L_c":-0.017197,
"datp_c":-0.026137,
"dctp_c":-0.028567,
"dgtp_c":-0.028567,
"dttp_c":-0.026137,
"fad_c":-1e-05,
"gln__L_c":-0.200228,
"glu__L_c":-0.256058,
"gly_c":-1.498961,
"glycogen_c":-0.027476,
"gtp_c":-0.186332,
"h2o_c":-53.303945,
"h_c":58.266936,
"his__L_c":-0.067143,
"ile__L_c":-0.087361,
"leu__L_c":-0.206491,
"lys__L_c":-0.311404,
"met__L_c":-0.104726,
"nad_c":-0.00215,
"nadh_c":-5e-05,
"nadp_c":-0.00013,
"nadph_c":-0.0004,
"pa2_ST_p":-4e-06,
"pe2_ST_p":-0.001531,
"peptido_ST_p":-0.049404,
"pg2_ST_p":-0.00042,
"phe__L_c":-0.13874,
"pi_c":59.81,
"ppi_c":0.771532,
"pro__L_c":-0.256971,
"ps2_ST_p":-4e-06,
"ptrc_c":-0.035,
"ser__L_c":-0.317225,
"spmd_c":-0.007,
"succoa_c":-3e-06,
"thr__L_c":-0.349831,
"trp__L_c":-0.087887,
"tyr__L_c":-0.040246,
"udpg_c":-0.003,
"utp_c":-0.154549,
"val__L_c":-0.284577
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Biomass and maintenance functions",
"notes":{
"original_bigg_ids":[
"biomass_iRR1083"
]
},
"annotation":{
"bigg.reaction":[
"BIOMASS_iRR1083"
],
"metanetx.reaction":[
"MNXR142701"
],
"sbo":"SBO:0000629"
}
},
{
"id":"peptido_ST",
"name":"Peptido ST formation reaction",
"metabolites":{
"murein5p5p_p":-1.0,
"peptido_ST_p":2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"peptido_ST"
]
},
"annotation":{
"bigg.reaction":[
"peptido_ST"
],
"metanetx.reaction":[
"MNXR105299"
],
"sbo":"SBO:0000176"
}
},
{
"id":"pe2_ST",
"name":"Membrane phosphatidylethanolamine composition based on http://www.biomedcentral.com/1752-0509/3/38",
"metabolites":{
"pe140_p":-14.0,
"pe160_p":-76.0,
"pe161_p":-4.0,
"pe180_p":-2.0,
"pe181_p":-3.0,
"pe2_ST_p":2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Phospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"pe2_ST"
]
},
"annotation":{
"bigg.reaction":[
"pe2_ST"
],
"metanetx.reaction":[
"MNXR105296"
],
"sbo":"SBO:0000176"
}
},
{
"id":"pg2_ST",
"name":"Membrane phosphatidylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38",
"metabolites":{
"pg140_p":-14.0,
"pg160_p":-76.0,
"pg161_p":-4.0,
"pg180_p":-2.0,
"pg181_p":-3.0,
"pg2_ST_p":2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Phospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"pg2_ST"
]
},
"annotation":{
"bigg.reaction":[
"pg2_ST"
],
"metanetx.reaction":[
"MNXR105300"
],
"sbo":"SBO:0000176"
}
},
{
"id":"clpn2_ST",
"name":"Membrane cardiolipin composition based on http://www.biomedcentral.com/1752-0509/3/38",
"metabolites":{
"clpn140_p":-14.0,
"clpn160_p":-76.0,
"clpn161_p":-4.0,
"clpn180_p":-2.0,
"clpn181_p":-3.0,
"clpn2_ST_p":2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Phospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"clpn2_ST"
]
},
"annotation":{
"bigg.reaction":[
"clpn2_ST"
],
"metanetx.reaction":[
"MNXR105286"
],
"sbo":"SBO:0000176"
}
},
{
"id":"pa2_ST",
"name":"Membrane phosphatidate composition based on http://www.biomedcentral.com/1752-0509/3/38",
"metabolites":{
"pa140_p":-14.0,
"pa160_p":-76.0,
"pa161_p":-4.0,
"pa180_p":-2.0,
"pa181_p":-3.0,
"pa2_ST_p":2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Phospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"pa2_ST"
]
},
"annotation":{
"bigg.reaction":[
"pa2_ST"
],
"metanetx.reaction":[
"MNXR105295"
],
"sbo":"SBO:0000176"
}
},
{
"id":"ps2_ST",
"name":"Membrane phosphatidylserine composition based on http://www.biomedcentral.com/1752-0509/3/38",
"metabolites":{
"ps140_c":-14.0,
"ps160_c":-76.0,
"ps161_c":-4.0,
"ps180_c":-2.0,
"ps181_c":-3.0,
"ps2_ST_p":2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Phospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"ps2_ST"
]
},
"annotation":{
"bigg.reaction":[
"ps2_ST"
],
"metanetx.reaction":[
"MNXR105301"
],
"sbo":"SBO:0000185"
}
},
{
"id":"12dgr2_ST",
"name":"Membrane 1-2-diacylglycerol composition based on http://www.biomedcentral.com/1752-0509/3/38",
"metabolites":{
"12dgr140_p":-14.0,
"12dgr160_p":-76.0,
"12dgr161_p":-4.0,
"12dgr180_p":-2.0,
"12dgr181_p":-3.0,
"12dgr2_ST_p":2.0
},
"lower_bound":-1000.0,
"upper_bound":1000.0,
"gene_reaction_rule":"",
"subsystem":"Phospholipid Metabolism",
"notes":{
"original_bigg_ids":[
"12dgr2_ST"
]
},
"annotation":{
"bigg.reaction":[
"12dgr2_ST"
],
"metanetx.reaction":[
"MNXR94685"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OAL_ST",
"name":"O-antigen ligase",
"metabolites":{
"OA_ST_p":-1.0,
"colipaOA_e":1.0,
"colipa_p":-1.0,
"h_p":1.0,
"udcpdp_p":1.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM3713",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"OAL_ST"
]
},
"annotation":{
"bigg.reaction":[
"OAL_ST"
],
"metanetx.reaction":[
"MNXR102109"
],
"sbo":"SBO:0000185"
}
},
{
"id":"OA4L_ST",
"name":"O-antigen 4 polymerase with long chain",
"metabolites":{
"OA_ST_p":1.0,
"h_p":24.0,
"udcpdp_p":24.0,
"udcpo4_p":-25.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM1332 and STM2079",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"OA4L_ST"
]
},
"annotation":{
"bigg.reaction":[
"OA4L_ST"
],
"metanetx.reaction":[
"MNXR102091"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OA5L_ST",
"name":"O-antigen 5 polymerase with long chain",
"metabolites":{
"OA_ST_p":1.0,
"h_p":24.0,
"udcpdp_p":24.0,
"udcpo5_p":-25.0
},
"lower_bound":0.0,
"upper_bound":1000.0,
"gene_reaction_rule":"STM1332 and STM2079",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"OA5L_ST"
]
},
"annotation":{
"bigg.reaction":[
"OA5L_ST"
],
"metanetx.reaction":[
"MNXR102093"
],
"sbo":"SBO:0000176"
}
},
{
"id":"OA4VL_ST",
"name":"O-antigen 4 polymerase with very long chain",
"metabolites":{
"OA_ST_p":1.0,
"h_p":99.0,
"udcpdp_p":99.0,
"udcpo4_p":-100.0
},
"lower_bound":0.0,
"upper_bound":0.0,
"gene_reaction_rule":"STM1332 and STM0589",
"subsystem":"Cell Envelope Biosynthesis",
"notes":{
"original_bigg_ids":[
"OA4VL_ST"
]
},
"annotation":{
"bigg.reaction":[
"OA4VL_ST"
],
"metanetx.reaction":[
"MNXR102092"
],
"sbo":"SBO:0000176"
}
}
],
"genes":[
{
"id":"STM0685",
"name":"nagE",
"notes":{
"original_bigg_ids":[
"STM0685"
]
},
"annotation":{
"ncbigi":[
"16419192"
],
"refseq_locus_tag":[
"STM0685"
],
"refseq_name":[
"nagE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1203",
"name":"ptsG",
"notes":{
"original_bigg_ids":[
"STM1203"
]
},
"annotation":{
"ncbigi":[
"16419720"
],
"refseq_locus_tag":[
"STM1203"
],
"refseq_name":[
"ptsG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4122",
"name":"argB",
"notes":{
"original_bigg_ids":[
"STM4122"
]
},
"annotation":{
"ncbigi":[
"16422689"
],
"refseq_locus_tag":[
"STM4122"
],
"refseq_name":[
"argB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1473",
"name":"ompN",
"notes":{
"original_bigg_ids":[
"STM1473"
]
},
"annotation":{
"ncbigi":[
"16419993"
],
"refseq_locus_tag":[
"STM1473"
],
"refseq_name":[
"ompN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2992",
"name":"argA",
"notes":{
"original_bigg_ids":[
"STM2992"
]
},
"annotation":{
"ncbigi":[
"16421541"
],
"refseq_locus_tag":[
"STM2992"
],
"refseq_name":[
"argA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0999",
"name":"ompF",
"notes":{
"original_bigg_ids":[
"STM0999"
]
},
"annotation":{
"ncbigi":[
"16419512"
],
"refseq_locus_tag":[
"STM0999"
],
"refseq_name":[
"ompF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3901",
"name":"ilvG",
"notes":{
"original_bigg_ids":[
"STM3901"
]
},
"annotation":{
"ncbigi":[
"16422469"
],
"refseq_locus_tag":[
"STM3901"
],
"refseq_name":[
"ilvG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3795",
"name":"ilvN",
"notes":{
"original_bigg_ids":[
"STM3795"
]
},
"annotation":{
"ncbigi":[
"16422365"
],
"refseq_locus_tag":[
"STM3795"
],
"refseq_name":[
"ilvN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3796",
"name":"ilvB",
"notes":{
"original_bigg_ids":[
"STM3796"
]
},
"annotation":{
"ncbigi":[
"16422366"
],
"refseq_locus_tag":[
"STM3796"
],
"refseq_name":[
"ilvB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3902",
"name":"ilvM",
"notes":{
"original_bigg_ids":[
"STM3902"
]
},
"annotation":{
"ncbigi":[
"16422470"
],
"refseq_locus_tag":[
"STM3902"
],
"refseq_name":[
"ilvM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2337",
"name":"ackA",
"notes":{
"original_bigg_ids":[
"STM2337"
]
},
"annotation":{
"ncbigi":[
"16420879"
],
"refseq_locus_tag":[
"STM2337"
],
"refseq_name":[
"ackA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3242",
"name":"tdcD",
"notes":{
"original_bigg_ids":[
"STM3242"
]
},
"annotation":{
"ncbigi":[
"16421800"
],
"refseq_locus_tag":[
"STM3242"
],
"refseq_name":[
"tdcD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2267",
"name":"ompC",
"notes":{
"original_bigg_ids":[
"STM2267"
]
},
"annotation":{
"ncbigi":[
"16420806"
],
"refseq_locus_tag":[
"STM2267"
],
"refseq_name":[
"ompC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0320",
"name":"phoE",
"notes":{
"original_bigg_ids":[
"STM0320"
]
},
"annotation":{
"ncbigi":[
"16418821"
],
"refseq_locus_tag":[
"STM0320"
],
"refseq_name":[
"phoE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2037",
"name":"pduF",
"notes":{
"original_bigg_ids":[
"STM2037"
]
},
"annotation":{
"ncbigi":[
"16420567"
],
"refseq_locus_tag":[
"STM2037"
],
"refseq_name":[
"pduF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0066",
"name":"carA",
"notes":{
"original_bigg_ids":[
"STM0066"
]
},
"annotation":{
"ncbigi":[
"16418562"
],
"refseq_locus_tag":[
"STM0066"
],
"refseq_name":[
"carA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0067",
"name":"carB",
"notes":{
"original_bigg_ids":[
"STM0067"
]
},
"annotation":{
"ncbigi":[
"16418563"
],
"refseq_locus_tag":[
"STM0067"
],
"refseq_name":[
"carB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1883",
"name":"purT",
"notes":{
"original_bigg_ids":[
"STM1883"
]
},
"annotation":{
"ncbigi":[
"16420419"
],
"refseq_locus_tag":[
"STM1883"
],
"refseq_name":[
"purT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3929",
"name":"wecG",
"notes":{
"original_bigg_ids":[
"STM3929"
]
},
"annotation":{
"ncbigi":[
"16422497"
],
"refseq_locus_tag":[
"STM3929"
],
"refseq_name":[
"wecG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3576",
"name":"zntA",
"notes":{
"original_bigg_ids":[
"STM3576"
]
},
"annotation":{
"ncbigi":[
"16422136"
],
"refseq_locus_tag":[
"STM3576"
],
"refseq_name":[
"zntA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1832",
"name":"manZ",
"notes":{
"original_bigg_ids":[
"STM1832"
]
},
"annotation":{
"ncbigi":[
"16420364"
],
"refseq_locus_tag":[
"STM1832"
],
"refseq_name":[
"manZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0758",
"name":"ybgR",
"notes":{
"original_bigg_ids":[
"STM0758"
]
},
"annotation":{
"ncbigi":[
"16419264"
],
"refseq_locus_tag":[
"STM0758"
],
"refseq_name":[
"ybgR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4061",
"name":"yiiP",
"notes":{
"original_bigg_ids":[
"STM4061"
]
},
"annotation":{
"ncbigi":[
"16422626"
],
"refseq_locus_tag":[
"STM4061"
],
"refseq_name":[
"yiiP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3190",
"name":"ygiE",
"notes":{
"original_bigg_ids":[
"STM3190"
]
},
"annotation":{
"ncbigi":[
"16421746"
],
"refseq_locus_tag":[
"STM3190"
],
"refseq_name":[
"ygiE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4064",
"name":"ushB",
"notes":{
"original_bigg_ids":[
"STM4064"
]
},
"annotation":{
"ncbigi":[
"16422629"
],
"refseq_locus_tag":[
"STM4064"
],
"refseq_name":[
"ushB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4227",
"name":"malG",
"notes":{
"original_bigg_ids":[
"STM4227"
]
},
"annotation":{
"ncbigi":[
"16422784"
],
"refseq_locus_tag":[
"STM4227"
],
"refseq_name":[
"malG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4228",
"name":"malF",
"notes":{
"original_bigg_ids":[
"STM4228"
]
},
"annotation":{
"ncbigi":[
"16422785"
],
"refseq_locus_tag":[
"STM4228"
],
"refseq_name":[
"malF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4230",
"name":"malK",
"notes":{
"original_bigg_ids":[
"STM4230"
]
},
"annotation":{
"ncbigi":[
"16422787"
],
"refseq_locus_tag":[
"STM4230"
],
"refseq_name":[
"malK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4229",
"name":"malE",
"notes":{
"original_bigg_ids":[
"STM4229"
]
},
"annotation":{
"ncbigi":[
"16422786"
],
"refseq_locus_tag":[
"STM4229"
],
"refseq_name":[
"malE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4231",
"name":"lamB",
"notes":{
"original_bigg_ids":[
"STM4231"
]
},
"annotation":{
"ncbigi":[
"16422788"
],
"refseq_locus_tag":[
"STM4231"
],
"refseq_name":[
"lamB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4403",
"name":"cpdB",
"notes":{
"original_bigg_ids":[
"STM4403"
]
},
"annotation":{
"ncbigi":[
"16422965"
],
"refseq_locus_tag":[
"STM4403"
],
"refseq_name":[
"cpdB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1831",
"name":"manY",
"notes":{
"original_bigg_ids":[
"STM1831"
]
},
"annotation":{
"ncbigi":[
"16420363"
],
"refseq_locus_tag":[
"STM1831"
],
"refseq_name":[
"manY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1830",
"name":"manX",
"notes":{
"original_bigg_ids":[
"STM1830"
]
},
"annotation":{
"ncbigi":[
"16420362"
],
"refseq_locus_tag":[
"STM1830"
],
"refseq_name":[
"manX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3338",
"name":"nanT",
"notes":{
"original_bigg_ids":[
"STM3338"
]
},
"annotation":{
"ncbigi":[
"16421896"
],
"refseq_locus_tag":[
"STM3338"
],
"refseq_name":[
"nanT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3009",
"name":"ygeD",
"notes":{
"original_bigg_ids":[
"STM3009"
]
},
"annotation":{
"ncbigi":[
"16421559"
],
"refseq_locus_tag":[
"STM3009"
],
"refseq_name":[
"ygeD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3010",
"name":"aas",
"notes":{
"original_bigg_ids":[
"STM3010"
]
},
"annotation":{
"ncbigi":[
"16421560"
],
"refseq_locus_tag":[
"STM3010"
],
"refseq_name":[
"aas"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1779",
"name":"ipk",
"notes":{
"original_bigg_ids":[
"STM1779"
]
},
"annotation":{
"ncbigi":[
"16420309"
],
"refseq_locus_tag":[
"STM1779"
],
"refseq_name":[
"ipk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3339",
"name":"nanA",
"notes":{
"original_bigg_ids":[
"STM3339"
]
},
"annotation":{
"ncbigi":[
"16421898"
],
"refseq_locus_tag":[
"STM3339"
],
"refseq_name":[
"nanA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0309",
"name":"yafH",
"notes":{
"original_bigg_ids":[
"STM0309"
]
},
"annotation":{
"ncbigi":[
"16418811"
],
"refseq_locus_tag":[
"STM0309"
],
"refseq_name":[
"yafH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1427",
"name":"cfa",
"notes":{
"original_bigg_ids":[
"STM1427"
]
},
"annotation":{
"ncbigi":[
"16419947"
],
"refseq_locus_tag":[
"STM1427"
],
"refseq_name":[
"cfa"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3646",
"name":"yiaE",
"notes":{
"original_bigg_ids":[
"STM3646"
]
},
"annotation":{
"ncbigi":[
"16422211"
],
"refseq_locus_tag":[
"STM3646"
],
"refseq_name":[
"yiaE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1193",
"name":"fabH",
"notes":{
"original_bigg_ids":[
"STM1193"
]
},
"annotation":{
"ncbigi":[
"16419710"
],
"refseq_locus_tag":[
"STM1193"
],
"refseq_name":[
"fabH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4120",
"name":"argE",
"notes":{
"original_bigg_ids":[
"STM4120"
]
},
"annotation":{
"ncbigi":[
"16422687"
],
"refseq_locus_tag":[
"STM4120"
],
"refseq_name":[
"argE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1712",
"name":"acnA",
"notes":{
"original_bigg_ids":[
"STM1712"
]
},
"annotation":{
"ncbigi":[
"16420242"
],
"refseq_locus_tag":[
"STM1712"
],
"refseq_name":[
"acnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0457",
"name":"cof",
"notes":{
"original_bigg_ids":[
"STM0457"
]
},
"annotation":{
"ncbigi":[
"16418965"
],
"refseq_locus_tag":[
"STM0457"
],
"refseq_name":[
"cof"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2164",
"name":"yehY",
"notes":{
"original_bigg_ids":[
"STM2164"
]
},
"annotation":{
"ncbigi":[
"16420700"
],
"refseq_locus_tag":[
"STM2164"
],
"refseq_name":[
"yehY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0158",
"name":"acnB",
"notes":{
"original_bigg_ids":[
"STM0158"
]
},
"annotation":{
"ncbigi":[
"16418659"
],
"refseq_locus_tag":[
"STM0158"
],
"refseq_name":[
"acnB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2162",
"name":"yehW",
"notes":{
"original_bigg_ids":[
"STM2162"
]
},
"annotation":{
"ncbigi":[
"16420698"
],
"refseq_locus_tag":[
"STM2162"
],
"refseq_name":[
"yehW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2165",
"name":"yehZ",
"notes":{
"original_bigg_ids":[
"STM2165"
]
},
"annotation":{
"ncbigi":[
"16420701"
],
"refseq_locus_tag":[
"STM2165"
],
"refseq_name":[
"yehZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2163",
"name":"yehX",
"notes":{
"original_bigg_ids":[
"STM2163"
]
},
"annotation":{
"ncbigi":[
"16420699"
],
"refseq_locus_tag":[
"STM2163"
],
"refseq_name":[
"yehX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1235",
"name":"ymfB",
"notes":{
"original_bigg_ids":[
"STM1235"
]
},
"annotation":{
"ncbigi":[
"16419754"
],
"refseq_locus_tag":[
"STM1235"
],
"refseq_name":[
"ymfB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3468",
"name":"argD",
"notes":{
"original_bigg_ids":[
"STM3468"
]
},
"annotation":{
"ncbigi":[
"16422025"
],
"refseq_locus_tag":[
"STM3468"
],
"refseq_name":[
"argD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0227",
"name":"fabZ",
"notes":{
"original_bigg_ids":[
"STM0227"
]
},
"annotation":{
"ncbigi":[
"16418732"
],
"refseq_locus_tag":[
"STM0227"
],
"refseq_name":[
"fabZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1303",
"name":"astC",
"notes":{
"original_bigg_ids":[
"STM1303"
]
},
"annotation":{
"ncbigi":[
"16419820"
],
"refseq_locus_tag":[
"STM1303"
],
"refseq_name":[
"astC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1067",
"name":"fabA",
"notes":{
"original_bigg_ids":[
"STM1067"
]
},
"annotation":{
"ncbigi":[
"16419582"
],
"refseq_locus_tag":[
"STM1067"
],
"refseq_name":[
"fabA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2384",
"name":"aroC",
"notes":{
"original_bigg_ids":[
"STM2384"
]
},
"annotation":{
"ncbigi":[
"16420928"
],
"refseq_locus_tag":[
"STM2384"
],
"refseq_name":[
"aroC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2577",
"name":"acpS",
"notes":{
"original_bigg_ids":[
"STM2577"
]
},
"annotation":{
"ncbigi":[
"16421124"
],
"refseq_locus_tag":[
"STM2577"
],
"refseq_name":[
"acpS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3674",
"name":"lyxK",
"notes":{
"original_bigg_ids":[
"STM3674"
]
},
"annotation":{
"ncbigi":[
"16422239"
],
"refseq_locus_tag":[
"STM3674"
],
"refseq_name":[
"lyxK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3583",
"name":"acpT",
"notes":{
"original_bigg_ids":[
"STM3583"
]
},
"annotation":{
"ncbigi":[
"16422144"
],
"refseq_locus_tag":[
"STM3583"
],
"refseq_name":[
"acpT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4233",
"name":"ubiC",
"notes":{
"original_bigg_ids":[
"STM4233"
]
},
"annotation":{
"ncbigi":[
"16422791"
],
"refseq_locus_tag":[
"STM4233"
],
"refseq_name":[
"ubiC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2645",
"name":"yfiK",
"notes":{
"original_bigg_ids":[
"STM2645"
]
},
"annotation":{
"ncbigi":[
"16421195"
],
"refseq_locus_tag":[
"STM2645"
],
"refseq_name":[
"yfiK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2927",
"name":"surE",
"notes":{
"original_bigg_ids":[
"STM2927"
]
},
"annotation":{
"ncbigi":[
"16421476"
],
"refseq_locus_tag":[
"STM2927"
],
"refseq_name":[
"surE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0623",
"name":"citD",
"notes":{
"original_bigg_ids":[
"STM0623"
]
},
"annotation":{
"ncbigi":[
"16419134"
],
"refseq_locus_tag":[
"STM0623"
],
"refseq_name":[
"citD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1517",
"name":"ydeD",
"notes":{
"original_bigg_ids":[
"STM1517"
]
},
"annotation":{
"ncbigi":[
"16420038"
],
"refseq_locus_tag":[
"STM1517"
],
"refseq_name":[
"ydeD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1195",
"name":"fabG",
"notes":{
"original_bigg_ids":[
"STM1195"
]
},
"annotation":{
"ncbigi":[
"16419712"
],
"refseq_locus_tag":[
"STM1195"
],
"refseq_name":[
"fabG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4273",
"name":"yjcG",
"notes":{
"original_bigg_ids":[
"STM4273"
]
},
"annotation":{
"ncbigi":[
"16422833"
],
"refseq_locus_tag":[
"STM4273"
],
"refseq_name":[
"yjcG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2378",
"name":"fabB",
"notes":{
"original_bigg_ids":[
"STM2378"
]
},
"annotation":{
"ncbigi":[
"16420922"
],
"refseq_locus_tag":[
"STM2378"
],
"refseq_name":[
"fabB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0060",
"name":"citE2",
"notes":{
"original_bigg_ids":[
"STM0060"
]
},
"annotation":{
"ncbigi":[
"16418556"
],
"refseq_locus_tag":[
"STM0060"
],
"refseq_name":[
"citE2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0061",
"name":"citF2",
"notes":{
"original_bigg_ids":[
"STM0061"
]
},
"annotation":{
"ncbigi":[
"16418557"
],
"refseq_locus_tag":[
"STM0061"
],
"refseq_name":[
"citF2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1197",
"name":"fabF",
"notes":{
"original_bigg_ids":[
"STM1197"
]
},
"annotation":{
"ncbigi":[
"16419714"
],
"refseq_locus_tag":[
"STM1197"
],
"refseq_name":[
"fabF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1463",
"name":"add",
"notes":{
"original_bigg_ids":[
"STM1463"
]
},
"annotation":{
"ncbigi":[
"16419984"
],
"refseq_locus_tag":[
"STM1463"
],
"refseq_name":[
"add"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0622",
"name":"citE",
"notes":{
"original_bigg_ids":[
"STM0622"
]
},
"annotation":{
"ncbigi":[
"16419133"
],
"refseq_locus_tag":[
"STM0622"
],
"refseq_name":[
"citE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0059",
"name":"citD2",
"notes":{
"original_bigg_ids":[
"STM0059"
]
},
"annotation":{
"ncbigi":[
"16418555"
],
"refseq_locus_tag":[
"STM0059"
],
"refseq_name":[
"citD2"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0621",
"name":"citF",
"notes":{
"original_bigg_ids":[
"STM0621"
]
},
"annotation":{
"ncbigi":[
"16419132"
],
"refseq_locus_tag":[
"STM0621"
],
"refseq_name":[
"citF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1198",
"name":"pabC",
"notes":{
"original_bigg_ids":[
"STM1198"
]
},
"annotation":{
"ncbigi":[
"16419715"
],
"refseq_locus_tag":[
"STM1198"
],
"refseq_name":[
"pabC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1743",
"name":"oppD",
"notes":{
"original_bigg_ids":[
"STM1743"
]
},
"annotation":{
"ncbigi":[
"16420274"
],
"refseq_locus_tag":[
"STM1743"
],
"refseq_name":[
"oppD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3469",
"name":"pabA",
"notes":{
"original_bigg_ids":[
"STM3469"
]
},
"annotation":{
"ncbigi":[
"16422026"
],
"refseq_locus_tag":[
"STM3469"
],
"refseq_name":[
"pabA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1742",
"name":"oppF",
"notes":{
"original_bigg_ids":[
"STM1742"
]
},
"annotation":{
"ncbigi":[
"16420273"
],
"refseq_locus_tag":[
"STM1742"
],
"refseq_name":[
"oppF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0620",
"name":"citX",
"notes":{
"original_bigg_ids":[
"STM0620"
]
},
"annotation":{
"ncbigi":[
"16419131"
],
"refseq_locus_tag":[
"STM0620"
],
"refseq_name":[
"citX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0618",
"name":"citT",
"notes":{
"original_bigg_ids":[
"STM0618"
]
},
"annotation":{
"ncbigi":[
"16419129"
],
"refseq_locus_tag":[
"STM0618"
],
"refseq_name":[
"citT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1824",
"name":"pabB",
"notes":{
"original_bigg_ids":[
"STM1824"
]
},
"annotation":{
"ncbigi":[
"16420356"
],
"refseq_locus_tag":[
"STM1824"
],
"refseq_name":[
"pabB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1739",
"name":"cls",
"notes":{
"original_bigg_ids":[
"STM1739"
]
},
"annotation":{
"ncbigi":[
"16420270"
],
"refseq_locus_tag":[
"STM1739"
],
"refseq_name":[
"cls"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1745",
"name":"oppB",
"notes":{
"original_bigg_ids":[
"STM1745"
]
},
"annotation":{
"ncbigi":[
"16420276"
],
"refseq_locus_tag":[
"STM1745"
],
"refseq_name":[
"oppB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1744",
"name":"oppC",
"notes":{
"original_bigg_ids":[
"STM1744"
]
},
"annotation":{
"ncbigi":[
"16420275"
],
"refseq_locus_tag":[
"STM1744"
],
"refseq_name":[
"oppC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3747",
"name":"yicE",
"notes":{
"original_bigg_ids":[
"STM3747"
]
},
"annotation":{
"ncbigi":[
"16422316"
],
"refseq_locus_tag":[
"STM3747"
],
"refseq_name":[
"yicE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0812",
"name":"ybhO",
"notes":{
"original_bigg_ids":[
"STM0812"
]
},
"annotation":{
"ncbigi":[
"16419318"
],
"refseq_locus_tag":[
"STM0812"
],
"refseq_name":[
"ybhO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1679",
"name":"mppA",
"notes":{
"original_bigg_ids":[
"STM1679"
]
},
"annotation":{
"ncbigi":[
"16420206"
],
"refseq_locus_tag":[
"STM1679"
],
"refseq_name":[
"mppA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0488",
"name":"adk",
"notes":{
"original_bigg_ids":[
"STM0488"
]
},
"annotation":{
"ncbigi":[
"16418996"
],
"refseq_locus_tag":[
"STM0488"
],
"refseq_name":[
"adk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0165",
"name":"speD",
"notes":{
"original_bigg_ids":[
"STM0165"
]
},
"annotation":{
"ncbigi":[
"16418666"
],
"refseq_locus_tag":[
"STM0165"
],
"refseq_name":[
"speD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1800",
"name":"ycgQ",
"notes":{
"original_bigg_ids":[
"STM1800"
]
},
"annotation":{
"ncbigi":[
"16420331"
],
"refseq_locus_tag":[
"STM1800"
],
"refseq_name":[
"ycgQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1490",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1490"
]
},
"annotation":{
"ncbigi":[
"16420010"
],
"refseq_locus_tag":[
"STM1490"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3939",
"name":"cyaA",
"notes":{
"original_bigg_ids":[
"STM3939"
]
},
"annotation":{
"ncbigi":[
"16422504"
],
"refseq_locus_tag":[
"STM3939"
],
"refseq_name":[
"cyaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0203",
"name":"yadQ",
"notes":{
"original_bigg_ids":[
"STM0203"
]
},
"annotation":{
"ncbigi":[
"16418707"
],
"refseq_locus_tag":[
"STM0203"
],
"refseq_name":[
"yadQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0051",
"name":"rihC",
"notes":{
"original_bigg_ids":[
"STM0051"
]
},
"annotation":{
"ncbigi":[
"16418546"
],
"refseq_locus_tag":[
"STM0051"
],
"refseq_name":[
"rihC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4483",
"name":"idnO",
"notes":{
"original_bigg_ids":[
"STM4483"
]
},
"annotation":{
"ncbigi":[
"16423048"
],
"refseq_locus_tag":[
"STM4483"
],
"refseq_name":[
"idnO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2409",
"name":"nupC",
"notes":{
"original_bigg_ids":[
"STM2409"
]
},
"annotation":{
"ncbigi":[
"16420953"
],
"refseq_locus_tag":[
"STM2409"
],
"refseq_name":[
"nupC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4482",
"name":"idnT",
"notes":{
"original_bigg_ids":[
"STM4482"
]
},
"annotation":{
"ncbigi":[
"16423047"
],
"refseq_locus_tag":[
"STM4482"
],
"refseq_name":[
"idnT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3952",
"name":"corA",
"notes":{
"original_bigg_ids":[
"STM3952"
]
},
"annotation":{
"ncbigi":[
"16422516"
],
"refseq_locus_tag":[
"STM3952"
],
"refseq_name":[
"corA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3113",
"name":"nupG",
"notes":{
"original_bigg_ids":[
"STM3113"
]
},
"annotation":{
"ncbigi":[
"16421667"
],
"refseq_locus_tag":[
"STM3113"
],
"refseq_name":[
"nupG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0984",
"name":"msbA",
"notes":{
"original_bigg_ids":[
"STM0984"
]
},
"annotation":{
"ncbigi":[
"16419496"
],
"refseq_locus_tag":[
"STM0984"
],
"refseq_name":[
"msbA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0207",
"name":"pfs",
"notes":{
"original_bigg_ids":[
"STM0207"
]
},
"annotation":{
"ncbigi":[
"16418711"
],
"refseq_locus_tag":[
"STM0207"
],
"refseq_name":[
"pfs"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2421",
"name":"xapB",
"notes":{
"original_bigg_ids":[
"STM2421"
]
},
"annotation":{
"ncbigi":[
"16420960"
],
"refseq_locus_tag":[
"STM2421"
],
"refseq_name":[
"xapB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0413",
"name":"tsx",
"notes":{
"original_bigg_ids":[
"STM0413"
]
},
"annotation":{
"ncbigi":[
"16418917"
],
"refseq_locus_tag":[
"STM0413"
],
"refseq_name":[
"tsx"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3315",
"name":"yrbH",
"notes":{
"original_bigg_ids":[
"STM3315"
]
},
"annotation":{
"ncbigi":[
"16421872"
],
"refseq_locus_tag":[
"STM3315"
],
"refseq_name":[
"yrbH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1196",
"name":"acpP",
"notes":{
"original_bigg_ids":[
"STM1196"
]
},
"annotation":{
"ncbigi":[
"16419713"
],
"refseq_locus_tag":[
"STM1196"
],
"refseq_name":[
"acpP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1204",
"name":"fhuE",
"notes":{
"original_bigg_ids":[
"STM1204"
]
},
"annotation":{
"ncbigi":[
"16419721"
],
"refseq_locus_tag":[
"STM1204"
],
"refseq_name":[
"fhuE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1342",
"name":"btuD",
"notes":{
"original_bigg_ids":[
"STM1342"
]
},
"annotation":{
"ncbigi":[
"16419861"
],
"refseq_locus_tag":[
"STM1342"
],
"refseq_name":[
"btuD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2451",
"name":"hemF",
"notes":{
"original_bigg_ids":[
"STM2451"
]
},
"annotation":{
"ncbigi":[
"16420991"
],
"refseq_locus_tag":[
"STM2451"
],
"refseq_name":[
"hemF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1340",
"name":"btuC",
"notes":{
"original_bigg_ids":[
"STM1340"
]
},
"annotation":{
"ncbigi":[
"16419859"
],
"refseq_locus_tag":[
"STM1340"
],
"refseq_name":[
"btuC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1963",
"name":"amyA",
"notes":{
"original_bigg_ids":[
"STM1963"
]
},
"annotation":{
"ncbigi":[
"16420498"
],
"refseq_locus_tag":[
"STM1963"
],
"refseq_name":[
"amyA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0206",
"name":"btuF",
"notes":{
"original_bigg_ids":[
"STM0206"
]
},
"annotation":{
"ncbigi":[
"16418710"
],
"refseq_locus_tag":[
"STM0206"
],
"refseq_name":[
"btuF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4004",
"name":"hemN",
"notes":{
"original_bigg_ids":[
"STM4004"
]
},
"annotation":{
"ncbigi":[
"16422566"
],
"refseq_locus_tag":[
"STM4004"
],
"refseq_name":[
"hemN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3158",
"name":"exbD",
"notes":{
"original_bigg_ids":[
"STM3158"
]
},
"annotation":{
"ncbigi":[
"16421713"
],
"refseq_locus_tag":[
"STM3158"
],
"refseq_name":[
"exbD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3664",
"name":"malS",
"notes":{
"original_bigg_ids":[
"STM3664"
]
},
"annotation":{
"ncbigi":[
"16422229"
],
"refseq_locus_tag":[
"STM3664"
],
"refseq_name":[
"malS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3159",
"name":"exbB",
"notes":{
"original_bigg_ids":[
"STM3159"
]
},
"annotation":{
"ncbigi":[
"16421714"
],
"refseq_locus_tag":[
"STM3159"
],
"refseq_name":[
"exbB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0072",
"name":"caiB",
"notes":{
"original_bigg_ids":[
"STM0072"
]
},
"annotation":{
"ncbigi":[
"16418568"
],
"refseq_locus_tag":[
"STM0072"
],
"refseq_name":[
"caiB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0071",
"name":"caiC",
"notes":{
"original_bigg_ids":[
"STM0071"
]
},
"annotation":{
"ncbigi":[
"16418567"
],
"refseq_locus_tag":[
"STM0071"
],
"refseq_name":[
"caiC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1737",
"name":"tonB",
"notes":{
"original_bigg_ids":[
"STM1737"
]
},
"annotation":{
"ncbigi":[
"16420268"
],
"refseq_locus_tag":[
"STM1737"
],
"refseq_name":[
"tonB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0070",
"name":"caiD",
"notes":{
"original_bigg_ids":[
"STM0070"
]
},
"annotation":{
"ncbigi":[
"16418566"
],
"refseq_locus_tag":[
"STM0070"
],
"refseq_name":[
"caiD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2792",
"name":"gabT",
"notes":{
"original_bigg_ids":[
"STM2792"
]
},
"annotation":{
"ncbigi":[
"16421340"
],
"refseq_locus_tag":[
"STM2792"
],
"refseq_name":[
"gabT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4130",
"name":"btuB",
"notes":{
"original_bigg_ids":[
"STM4130"
]
},
"annotation":{
"ncbigi":[
"16422697"
],
"refseq_locus_tag":[
"STM4130"
],
"refseq_name":[
"btuB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1597",
"name":"ydcW",
"notes":{
"original_bigg_ids":[
"STM1597"
]
},
"annotation":{
"ncbigi":[
"16420121"
],
"refseq_locus_tag":[
"STM1597"
],
"refseq_name":[
"ydcW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3185",
"name":"yqiE",
"notes":{
"original_bigg_ids":[
"STM3185"
]
},
"annotation":{
"ncbigi":[
"16421741"
],
"refseq_locus_tag":[
"STM3185"
],
"refseq_name":[
"yqiE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2793",
"name":"gabP",
"notes":{
"original_bigg_ids":[
"STM2793"
]
},
"annotation":{
"ncbigi":[
"16421341"
],
"refseq_locus_tag":[
"STM2793"
],
"refseq_name":[
"gabP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0483",
"name":"apt",
"notes":{
"original_bigg_ids":[
"STM0483"
]
},
"annotation":{
"ncbigi":[
"16418991"
],
"refseq_locus_tag":[
"STM0483"
],
"refseq_name":[
"apt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1749",
"name":"adhE",
"notes":{
"original_bigg_ids":[
"STM1749"
]
},
"annotation":{
"ncbigi":[
"16420280"
],
"refseq_locus_tag":[
"STM1749"
],
"refseq_name":[
"adhE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2811",
"name":"proX",
"notes":{
"original_bigg_ids":[
"STM2811"
]
},
"annotation":{
"ncbigi":[
"16421360"
],
"refseq_locus_tag":[
"STM2811"
],
"refseq_name":[
"proX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2933",
"name":"cysC",
"notes":{
"original_bigg_ids":[
"STM2933"
]
},
"annotation":{
"ncbigi":[
"16421482"
],
"refseq_locus_tag":[
"STM2933"
],
"refseq_name":[
"cysC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2809",
"name":"proV",
"notes":{
"original_bigg_ids":[
"STM2809"
]
},
"annotation":{
"ncbigi":[
"16421358"
],
"refseq_locus_tag":[
"STM2809"
],
"refseq_name":[
"proV"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2810",
"name":"proW",
"notes":{
"original_bigg_ids":[
"STM2810"
]
},
"annotation":{
"ncbigi":[
"16421359"
],
"refseq_locus_tag":[
"STM2810"
],
"refseq_name":[
"proW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1232",
"name":"purB",
"notes":{
"original_bigg_ids":[
"STM1232"
]
},
"annotation":{
"ncbigi":[
"16419751"
],
"refseq_locus_tag":[
"STM1232"
],
"refseq_name":[
"purB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2463",
"name":"eutE",
"notes":{
"original_bigg_ids":[
"STM2463"
]
},
"annotation":{
"ncbigi":[
"16421003"
],
"refseq_locus_tag":[
"STM2463"
],
"refseq_name":[
"eutE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4366",
"name":"purA",
"notes":{
"original_bigg_ids":[
"STM4366"
]
},
"annotation":{
"ncbigi":[
"16422927"
],
"refseq_locus_tag":[
"STM4366"
],
"refseq_name":[
"purA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4290",
"name":"proP",
"notes":{
"original_bigg_ids":[
"STM4290"
]
},
"annotation":{
"ncbigi":[
"16422851"
],
"refseq_locus_tag":[
"STM4290"
],
"refseq_name":[
"proP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0074",
"name":"caiT",
"notes":{
"original_bigg_ids":[
"STM0074"
]
},
"annotation":{
"ncbigi":[
"16418571"
],
"refseq_locus_tag":[
"STM0074"
],
"refseq_name":[
"caiT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0683",
"name":"nagA",
"notes":{
"original_bigg_ids":[
"STM0683"
]
},
"annotation":{
"ncbigi":[
"16419190"
],
"refseq_locus_tag":[
"STM0683"
],
"refseq_name":[
"nagA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0146",
"name":"ampD",
"notes":{
"original_bigg_ids":[
"STM0146"
]
},
"annotation":{
"ncbigi":[
"16418646"
],
"refseq_locus_tag":[
"STM0146"
],
"refseq_name":[
"ampD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0730",
"name":"gltA",
"notes":{
"original_bigg_ids":[
"STM0730"
]
},
"annotation":{
"ncbigi":[
"16419239"
],
"refseq_locus_tag":[
"STM0730"
],
"refseq_name":[
"gltA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2991",
"name":"amiC",
"notes":{
"original_bigg_ids":[
"STM2991"
]
},
"annotation":{
"ncbigi":[
"16421540"
],
"refseq_locus_tag":[
"STM2991"
],
"refseq_name":[
"amiC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2450",
"name":"amiA",
"notes":{
"original_bigg_ids":[
"STM2450"
]
},
"annotation":{
"ncbigi":[
"16420990"
],
"refseq_locus_tag":[
"STM2450"
],
"refseq_name":[
"amiA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2953",
"name":"pyrG",
"notes":{
"original_bigg_ids":[
"STM2953"
]
},
"annotation":{
"ncbigi":[
"16421504"
],
"refseq_locus_tag":[
"STM2953"
],
"refseq_name":[
"pyrG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0168",
"name":"cueO",
"notes":{
"original_bigg_ids":[
"STM0168"
]
},
"annotation":{
"ncbigi":[
"16418670"
],
"refseq_locus_tag":[
"STM0168"
],
"refseq_name":[
"cueO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"s0001",
"name":"",
"notes":{
"original_bigg_ids":[
"s0001"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM4358",
"name":"amiB",
"notes":{
"original_bigg_ids":[
"STM4358"
]
},
"annotation":{
"ncbigi":[
"16422918"
],
"refseq_locus_tag":[
"STM4358"
],
"refseq_name":[
"amiB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1209",
"name":"nagZ",
"notes":{
"original_bigg_ids":[
"STM1209"
]
},
"annotation":{
"ncbigi":[
"16419726"
],
"refseq_locus_tag":[
"STM1209"
],
"refseq_name":[
"nagZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2018",
"name":"cobU",
"notes":{
"original_bigg_ids":[
"STM2018"
]
},
"annotation":{
"ncbigi":[
"16420547"
],
"refseq_locus_tag":[
"STM2018"
],
"refseq_name":[
"cobU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0498",
"name":"copA",
"notes":{
"original_bigg_ids":[
"STM0498"
]
},
"annotation":{
"ncbigi":[
"16419007"
],
"refseq_locus_tag":[
"STM0498"
],
"refseq_name":[
"copA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0444",
"name":"ampG",
"notes":{
"original_bigg_ids":[
"STM0444"
]
},
"annotation":{
"ncbigi":[
"16418951"
],
"refseq_locus_tag":[
"STM0444"
],
"refseq_name":[
"ampG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3710",
"name":"rfaD",
"notes":{
"original_bigg_ids":[
"STM3710"
]
},
"annotation":{
"ncbigi":[
"16422277"
],
"refseq_locus_tag":[
"STM3710"
],
"refseq_name":[
"rfaD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0353",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0353"
]
},
"annotation":{
"ncbigi":[
"16418854"
],
"refseq_locus_tag":[
"STM0353"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0232",
"name":"accA",
"notes":{
"original_bigg_ids":[
"STM0232"
]
},
"annotation":{
"ncbigi":[
"16418737"
],
"refseq_locus_tag":[
"STM0232"
],
"refseq_name":[
"accA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3078",
"name":"speB",
"notes":{
"original_bigg_ids":[
"STM3078"
]
},
"annotation":{
"ncbigi":[
"16421630"
],
"refseq_locus_tag":[
"STM3078"
],
"refseq_name":[
"speB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3379",
"name":"accB",
"notes":{
"original_bigg_ids":[
"STM3379"
]
},
"annotation":{
"ncbigi":[
"16421940"
],
"refseq_locus_tag":[
"STM3379"
],
"refseq_name":[
"accB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3525",
"name":"glpE",
"notes":{
"original_bigg_ids":[
"STM3525"
]
},
"annotation":{
"ncbigi":[
"16422084"
],
"refseq_locus_tag":[
"STM3525"
],
"refseq_name":[
"glpE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3173",
"name":"plsC",
"notes":{
"original_bigg_ids":[
"STM3173"
]
},
"annotation":{
"ncbigi":[
"16421728"
],
"refseq_locus_tag":[
"STM3173"
],
"refseq_name":[
"plsC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1686",
"name":"pspE",
"notes":{
"original_bigg_ids":[
"STM1686"
]
},
"annotation":{
"ncbigi":[
"16420214"
],
"refseq_locus_tag":[
"STM1686"
],
"refseq_name":[
"pspE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3380",
"name":"accC",
"notes":{
"original_bigg_ids":[
"STM3380"
]
},
"annotation":{
"ncbigi":[
"16421941"
],
"refseq_locus_tag":[
"STM3380"
],
"refseq_name":[
"accC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4121",
"name":"argC",
"notes":{
"original_bigg_ids":[
"STM4121"
]
},
"annotation":{
"ncbigi":[
"16422688"
],
"refseq_locus_tag":[
"STM4121"
],
"refseq_name":[
"argC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2366",
"name":"accD",
"notes":{
"original_bigg_ids":[
"STM2366"
]
},
"annotation":{
"ncbigi":[
"16420909"
],
"refseq_locus_tag":[
"STM2366"
],
"refseq_name":[
"accD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3161",
"name":"metC",
"notes":{
"original_bigg_ids":[
"STM3161"
]
},
"annotation":{
"ncbigi":[
"16421716"
],
"refseq_locus_tag":[
"STM3161"
],
"refseq_name":[
"metC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4176",
"name":"purH",
"notes":{
"original_bigg_ids":[
"STM4176"
]
},
"annotation":{
"ncbigi":[
"16422735"
],
"refseq_locus_tag":[
"STM4176"
],
"refseq_name":[
"purH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4275",
"name":"acs",
"notes":{
"original_bigg_ids":[
"STM4275"
]
},
"annotation":{
"ncbigi":[
"16422835"
],
"refseq_locus_tag":[
"STM4275"
],
"refseq_name":[
"acs"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0533",
"name":"purK",
"notes":{
"original_bigg_ids":[
"STM0533"
]
},
"annotation":{
"ncbigi":[
"16419043"
],
"refseq_locus_tag":[
"STM0533"
],
"refseq_name":[
"purK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2430",
"name":"cysK",
"notes":{
"original_bigg_ids":[
"STM2430"
]
},
"annotation":{
"ncbigi":[
"16420969"
],
"refseq_locus_tag":[
"STM2430"
],
"refseq_name":[
"cysK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0534",
"name":"purE",
"notes":{
"original_bigg_ids":[
"STM0534"
]
},
"annotation":{
"ncbigi":[
"16419044"
],
"refseq_locus_tag":[
"STM0534"
],
"refseq_name":[
"purE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0371",
"name":"prpE",
"notes":{
"original_bigg_ids":[
"STM0371"
]
},
"annotation":{
"ncbigi":[
"16418873"
],
"refseq_locus_tag":[
"STM0371"
],
"refseq_name":[
"prpE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0154",
"name":"lpdA",
"notes":{
"original_bigg_ids":[
"STM0154"
]
},
"annotation":{
"ncbigi":[
"16418655"
],
"refseq_locus_tag":[
"STM0154"
],
"refseq_name":[
"lpdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1220",
"name":"ycfX",
"notes":{
"original_bigg_ids":[
"STM1220"
]
},
"annotation":{
"ncbigi":[
"16419738"
],
"refseq_locus_tag":[
"STM1220"
],
"refseq_name":[
"ycfX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2440",
"name":"cysM",
"notes":{
"original_bigg_ids":[
"STM2440"
]
},
"annotation":{
"ncbigi":[
"16420980"
],
"refseq_locus_tag":[
"STM2440"
],
"refseq_name":[
"cysM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0737",
"name":"sucB",
"notes":{
"original_bigg_ids":[
"STM0737"
]
},
"annotation":{
"ncbigi":[
"16419247"
],
"refseq_locus_tag":[
"STM0737"
],
"refseq_name":[
"sucB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2984",
"name":"csdA",
"notes":{
"original_bigg_ids":[
"STM2984"
]
},
"annotation":{
"ncbigi":[
"16421534"
],
"refseq_locus_tag":[
"STM2984"
],
"refseq_name":[
"csdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0736",
"name":"sucA",
"notes":{
"original_bigg_ids":[
"STM0736"
]
},
"annotation":{
"ncbigi":[
"16419246"
],
"refseq_locus_tag":[
"STM0736"
],
"refseq_name":[
"sucA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2654",
"name":"kgtP",
"notes":{
"original_bigg_ids":[
"STM2654"
]
},
"annotation":{
"ncbigi":[
"16421204"
],
"refseq_locus_tag":[
"STM2654"
],
"refseq_name":[
"kgtP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3918",
"name":"rfe",
"notes":{
"original_bigg_ids":[
"STM3918"
]
},
"annotation":{
"ncbigi":[
"16422486"
],
"refseq_locus_tag":[
"STM3918"
],
"refseq_name":[
"rfe"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3630",
"name":"dppA",
"notes":{
"original_bigg_ids":[
"STM3630"
]
},
"annotation":{
"ncbigi":[
"16422195"
],
"refseq_locus_tag":[
"STM3630"
],
"refseq_name":[
"dppA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2432",
"name":"ptsI",
"notes":{
"original_bigg_ids":[
"STM2432"
]
},
"annotation":{
"ncbigi":[
"16420971"
],
"refseq_locus_tag":[
"STM2432"
],
"refseq_name":[
"ptsI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2433",
"name":"crr",
"notes":{
"original_bigg_ids":[
"STM2433"
]
},
"annotation":{
"ncbigi":[
"16420972"
],
"refseq_locus_tag":[
"STM2433"
],
"refseq_name":[
"crr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1464",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1464"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM2431",
"name":"ptsH",
"notes":{
"original_bigg_ids":[
"STM2431"
]
},
"annotation":{
"ncbigi":[
"16420970"
],
"refseq_locus_tag":[
"STM2431"
],
"refseq_name":[
"ptsH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3627",
"name":"dppD",
"notes":{
"original_bigg_ids":[
"STM3627"
]
},
"annotation":{
"ncbigi":[
"16422192"
],
"refseq_locus_tag":[
"STM3627"
],
"refseq_name":[
"dppD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1557",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1557"
]
},
"annotation":{
"ncbigi":[
"16420078"
],
"refseq_locus_tag":[
"STM1557"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3629",
"name":"dppB",
"notes":{
"original_bigg_ids":[
"STM3629"
]
},
"annotation":{
"ncbigi":[
"16422194"
],
"refseq_locus_tag":[
"STM3629"
],
"refseq_name":[
"dppB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3628",
"name":"dppC",
"notes":{
"original_bigg_ids":[
"STM3628"
]
},
"annotation":{
"ncbigi":[
"16422193"
],
"refseq_locus_tag":[
"STM3628"
],
"refseq_name":[
"dppC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3626",
"name":"dppF",
"notes":{
"original_bigg_ids":[
"STM3626"
]
},
"annotation":{
"ncbigi":[
"16422191"
],
"refseq_locus_tag":[
"STM3626"
],
"refseq_name":[
"dppF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0537",
"name":"cysS",
"notes":{
"original_bigg_ids":[
"STM0537"
]
},
"annotation":{
"ncbigi":[
"16419048"
],
"refseq_locus_tag":[
"STM0537"
],
"refseq_name":[
"cysS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0130",
"name":"ddlB",
"notes":{
"original_bigg_ids":[
"STM0130"
]
},
"annotation":{
"ncbigi":[
"16418630"
],
"refseq_locus_tag":[
"STM0130"
],
"refseq_name":[
"ddlB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0957",
"name":"cydD",
"notes":{
"original_bigg_ids":[
"STM0957"
]
},
"annotation":{
"ncbigi":[
"16419468"
],
"refseq_locus_tag":[
"STM0957"
],
"refseq_name":[
"cydD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4340",
"name":"frdD",
"notes":{
"original_bigg_ids":[
"STM4340"
]
},
"annotation":{
"ncbigi":[
"16422902"
],
"refseq_locus_tag":[
"STM4340"
],
"refseq_name":[
"frdD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0380",
"name":"ddlA",
"notes":{
"original_bigg_ids":[
"STM0380"
]
},
"annotation":{
"ncbigi":[
"16418883"
],
"refseq_locus_tag":[
"STM0380"
],
"refseq_name":[
"ddlA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4342",
"name":"frdB",
"notes":{
"original_bigg_ids":[
"STM4342"
]
},
"annotation":{
"ncbigi":[
"16422904"
],
"refseq_locus_tag":[
"STM4342"
],
"refseq_name":[
"frdB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0956",
"name":"cydC",
"notes":{
"original_bigg_ids":[
"STM0956"
]
},
"annotation":{
"ncbigi":[
"16419467"
],
"refseq_locus_tag":[
"STM0956"
],
"refseq_name":[
"cydC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1681",
"name":"ycjG",
"notes":{
"original_bigg_ids":[
"STM1681"
]
},
"annotation":{
"ncbigi":[
"16420208"
],
"refseq_locus_tag":[
"STM1681"
],
"refseq_name":[
"ycjG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0441",
"name":"cyoC",
"notes":{
"original_bigg_ids":[
"STM0441"
]
},
"annotation":{
"ncbigi":[
"16418948"
],
"refseq_locus_tag":[
"STM0441"
],
"refseq_name":[
"cyoC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1802",
"name":"dadX",
"notes":{
"original_bigg_ids":[
"STM1802"
]
},
"annotation":{
"ncbigi":[
"16420333"
],
"refseq_locus_tag":[
"STM1802"
],
"refseq_name":[
"dadX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0442",
"name":"cyoB",
"notes":{
"original_bigg_ids":[
"STM0442"
]
},
"annotation":{
"ncbigi":[
"16418949"
],
"refseq_locus_tag":[
"STM0442"
],
"refseq_name":[
"cyoB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4343",
"name":"frdA",
"notes":{
"original_bigg_ids":[
"STM4343"
]
},
"annotation":{
"ncbigi":[
"16422905"
],
"refseq_locus_tag":[
"STM4343"
],
"refseq_name":[
"frdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4341",
"name":"frdC",
"notes":{
"original_bigg_ids":[
"STM4341"
]
},
"annotation":{
"ncbigi":[
"16422903"
],
"refseq_locus_tag":[
"STM4341"
],
"refseq_name":[
"frdC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0440",
"name":"cyoD",
"notes":{
"original_bigg_ids":[
"STM0440"
]
},
"annotation":{
"ncbigi":[
"16418947"
],
"refseq_locus_tag":[
"STM0440"
],
"refseq_name":[
"cyoD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4247",
"name":"alr",
"notes":{
"original_bigg_ids":[
"STM4247"
]
},
"annotation":{
"ncbigi":[
"16422805"
],
"refseq_locus_tag":[
"STM4247"
],
"refseq_name":[
"alr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0443",
"name":"cyoA",
"notes":{
"original_bigg_ids":[
"STM0443"
]
},
"annotation":{
"ncbigi":[
"16418950"
],
"refseq_locus_tag":[
"STM0443"
],
"refseq_name":[
"cyoA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2205",
"name":"fruK",
"notes":{
"original_bigg_ids":[
"STM2205"
]
},
"annotation":{
"ncbigi":[
"16420743"
],
"refseq_locus_tag":[
"STM2205"
],
"refseq_name":[
"fruK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2555",
"name":"glyA",
"notes":{
"original_bigg_ids":[
"STM2555"
]
},
"annotation":{
"ncbigi":[
"16421101"
],
"refseq_locus_tag":[
"STM2555"
],
"refseq_name":[
"glyA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2206",
"name":"fruF",
"notes":{
"original_bigg_ids":[
"STM2206"
]
},
"annotation":{
"ncbigi":[
"16420744"
],
"refseq_locus_tag":[
"STM2206"
],
"refseq_name":[
"fruF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2204",
"name":"fruA",
"notes":{
"original_bigg_ids":[
"STM2204"
]
},
"annotation":{
"ncbigi":[
"16420742"
],
"refseq_locus_tag":[
"STM2204"
],
"refseq_name":[
"fruA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2183",
"name":"cdd",
"notes":{
"original_bigg_ids":[
"STM2183"
]
},
"annotation":{
"ncbigi":[
"16420720"
],
"refseq_locus_tag":[
"STM2183"
],
"refseq_name":[
"cdd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0934",
"name":"ltaA",
"notes":{
"original_bigg_ids":[
"STM0934"
]
},
"annotation":{
"ncbigi":[
"16419445"
],
"refseq_locus_tag":[
"STM0934"
],
"refseq_name":[
"ltaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0661",
"name":"ybeK",
"notes":{
"original_bigg_ids":[
"STM0661"
]
},
"annotation":{
"ncbigi":[
"16419174"
],
"refseq_locus_tag":[
"STM0661"
],
"refseq_name":[
"ybeK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1756",
"name":"purU",
"notes":{
"original_bigg_ids":[
"STM1756"
]
},
"annotation":{
"ncbigi":[
"16420288"
],
"refseq_locus_tag":[
"STM1756"
],
"refseq_name":[
"purU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2827",
"name":"alaS",
"notes":{
"original_bigg_ids":[
"STM2827"
]
},
"annotation":{
"ncbigi":[
"16421372"
],
"refseq_locus_tag":[
"STM2827"
],
"refseq_name":[
"alaS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2975",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2975"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM3567",
"name":"livJ",
"notes":{
"original_bigg_ids":[
"STM3567"
]
},
"annotation":{
"ncbigi":[
"16422127"
],
"refseq_locus_tag":[
"STM3567"
],
"refseq_name":[
"livJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1469",
"name":"fumC",
"notes":{
"original_bigg_ids":[
"STM1469"
]
},
"annotation":{
"ncbigi":[
"16419988"
],
"refseq_locus_tag":[
"STM1469"
],
"refseq_name":[
"fumC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0761",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0761"
]
},
"annotation":{
"ncbigi":[
"16419267"
],
"refseq_locus_tag":[
"STM0761"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2122",
"name":"udk",
"notes":{
"original_bigg_ids":[
"STM2122"
]
},
"annotation":{
"ncbigi":[
"16420656"
],
"refseq_locus_tag":[
"STM2122"
],
"refseq_name":[
"udk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3560",
"name":"livF",
"notes":{
"original_bigg_ids":[
"STM3560"
]
},
"annotation":{
"ncbigi":[
"16422120"
],
"refseq_locus_tag":[
"STM3560"
],
"refseq_name":[
"livF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0980",
"name":"cmk",
"notes":{
"original_bigg_ids":[
"STM0980"
]
},
"annotation":{
"ncbigi":[
"16419492"
],
"refseq_locus_tag":[
"STM0980"
],
"refseq_name":[
"cmk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3563",
"name":"livH",
"notes":{
"original_bigg_ids":[
"STM3563"
]
},
"annotation":{
"ncbigi":[
"16422123"
],
"refseq_locus_tag":[
"STM3563"
],
"refseq_name":[
"livH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1803",
"name":"dadA",
"notes":{
"original_bigg_ids":[
"STM1803"
]
},
"annotation":{
"ncbigi":[
"16420334"
],
"refseq_locus_tag":[
"STM1803"
],
"refseq_name":[
"dadA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0762",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0762"
]
},
"annotation":{
"ncbigi":[
"16419268"
],
"refseq_locus_tag":[
"STM0762"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3561",
"name":"livG",
"notes":{
"original_bigg_ids":[
"STM3561"
]
},
"annotation":{
"ncbigi":[
"16422121"
],
"refseq_locus_tag":[
"STM3561"
],
"refseq_name":[
"livG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1468",
"name":"fumA",
"notes":{
"original_bigg_ids":[
"STM1468"
]
},
"annotation":{
"ncbigi":[
"16419987"
],
"refseq_locus_tag":[
"STM1468"
],
"refseq_name":[
"fumA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4300",
"name":"fumB",
"notes":{
"original_bigg_ids":[
"STM4300"
]
},
"annotation":{
"ncbigi":[
"16422862"
],
"refseq_locus_tag":[
"STM4300"
],
"refseq_name":[
"fumB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4236",
"name":"dgkA",
"notes":{
"original_bigg_ids":[
"STM4236"
]
},
"annotation":{
"ncbigi":[
"16422794"
],
"refseq_locus_tag":[
"STM4236"
],
"refseq_name":[
"dgkA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3013",
"name":"lysA",
"notes":{
"original_bigg_ids":[
"STM3013"
]
},
"annotation":{
"ncbigi":[
"16421563"
],
"refseq_locus_tag":[
"STM3013"
],
"refseq_name":[
"lysA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3947",
"name":"dapF",
"notes":{
"original_bigg_ids":[
"STM3947"
]
},
"annotation":{
"ncbigi":[
"16422511"
],
"refseq_locus_tag":[
"STM3947"
],
"refseq_name":[
"dapF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3562",
"name":"livM",
"notes":{
"original_bigg_ids":[
"STM3562"
]
},
"annotation":{
"ncbigi":[
"16422122"
],
"refseq_locus_tag":[
"STM3562"
],
"refseq_name":[
"livM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3862",
"name":"glmU",
"notes":{
"original_bigg_ids":[
"STM3862"
]
},
"annotation":{
"ncbigi":[
"16422436"
],
"refseq_locus_tag":[
"STM3862"
],
"refseq_name":[
"glmU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4398",
"name":"cycA",
"notes":{
"original_bigg_ids":[
"STM4398"
]
},
"annotation":{
"ncbigi":[
"16422960"
],
"refseq_locus_tag":[
"STM4398"
],
"refseq_name":[
"cycA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1117",
"name":"agp",
"notes":{
"original_bigg_ids":[
"STM1117"
]
},
"annotation":{
"ncbigi":[
"16419633"
],
"refseq_locus_tag":[
"STM1117"
],
"refseq_name":[
"agp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1954",
"name":"fliY",
"notes":{
"original_bigg_ids":[
"STM1954"
]
},
"annotation":{
"ncbigi":[
"16420489"
],
"refseq_locus_tag":[
"STM1954"
],
"refseq_name":[
"fliY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0006",
"name":"yaaJ",
"notes":{
"original_bigg_ids":[
"STM0006"
]
},
"annotation":{
"ncbigi":[
"16418499"
],
"refseq_locus_tag":[
"STM0006"
],
"refseq_name":[
"yaaJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0222",
"name":"cdsA",
"notes":{
"original_bigg_ids":[
"STM0222"
]
},
"annotation":{
"ncbigi":[
"16418727"
],
"refseq_locus_tag":[
"STM0222"
],
"refseq_name":[
"cdsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3195",
"name":"ribB",
"notes":{
"original_bigg_ids":[
"STM3195"
]
},
"annotation":{
"ncbigi":[
"16421752"
],
"refseq_locus_tag":[
"STM3195"
],
"refseq_name":[
"ribB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2095",
"name":"rfbA",
"notes":{
"original_bigg_ids":[
"STM2095"
]
},
"annotation":{
"ncbigi":[
"16420627"
],
"refseq_locus_tag":[
"STM2095"
],
"refseq_name":[
"rfbA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3680",
"name":"aldB",
"notes":{
"original_bigg_ids":[
"STM3680"
]
},
"annotation":{
"ncbigi":[
"16422245"
],
"refseq_locus_tag":[
"STM3680"
],
"refseq_name":[
"aldB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3923",
"name":"rffH",
"notes":{
"original_bigg_ids":[
"STM3923"
]
},
"annotation":{
"ncbigi":[
"16422491"
],
"refseq_locus_tag":[
"STM3923"
],
"refseq_name":[
"rffH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1489",
"name":"ynfK",
"notes":{
"original_bigg_ids":[
"STM1489"
]
},
"annotation":{
"ncbigi":[
"16420009"
],
"refseq_locus_tag":[
"STM1489"
],
"refseq_name":[
"ynfK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0527",
"name":"allC",
"notes":{
"original_bigg_ids":[
"STM0527"
]
},
"annotation":{
"ncbigi":[
"16419037"
],
"refseq_locus_tag":[
"STM0527"
],
"refseq_name":[
"allC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0797",
"name":"bioD",
"notes":{
"original_bigg_ids":[
"STM0797"
]
},
"annotation":{
"ncbigi":[
"16419302"
],
"refseq_locus_tag":[
"STM0797"
],
"refseq_name":[
"bioD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0202",
"name":"hemL",
"notes":{
"original_bigg_ids":[
"STM0202"
]
},
"annotation":{
"ncbigi":[
"16418706"
],
"refseq_locus_tag":[
"STM0202"
],
"refseq_name":[
"hemL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0523",
"name":"allB",
"notes":{
"original_bigg_ids":[
"STM0523"
]
},
"annotation":{
"ncbigi":[
"16419033"
],
"refseq_locus_tag":[
"STM0523"
],
"refseq_name":[
"allB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4249",
"name":"aphA",
"notes":{
"original_bigg_ids":[
"STM4249"
]
},
"annotation":{
"ncbigi":[
"16422807"
],
"refseq_locus_tag":[
"STM4249"
],
"refseq_name":[
"aphA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4235",
"name":"plsB",
"notes":{
"original_bigg_ids":[
"STM4235"
]
},
"annotation":{
"ncbigi":[
"16422793"
],
"refseq_locus_tag":[
"STM4235"
],
"refseq_name":[
"plsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2121",
"name":"dcd",
"notes":{
"original_bigg_ids":[
"STM2121"
]
},
"annotation":{
"ncbigi":[
"16420655"
],
"refseq_locus_tag":[
"STM2121"
],
"refseq_name":[
"dcd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0522",
"name":"allP",
"notes":{
"original_bigg_ids":[
"STM0522"
]
},
"annotation":{
"ncbigi":[
"16419032"
],
"refseq_locus_tag":[
"STM0522"
],
"refseq_name":[
"allP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0255",
"name":"yafB",
"notes":{
"original_bigg_ids":[
"STM0255"
]
},
"annotation":{
"ncbigi":[
"16418754"
],
"refseq_locus_tag":[
"STM0255"
],
"refseq_name":[
"yafB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2391",
"name":"fadL",
"notes":{
"original_bigg_ids":[
"STM2391"
]
},
"annotation":{
"ncbigi":[
"16420935"
],
"refseq_locus_tag":[
"STM2391"
],
"refseq_name":[
"fadL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3165",
"name":"yqhE",
"notes":{
"original_bigg_ids":[
"STM3165"
]
},
"annotation":{
"ncbigi":[
"16421720"
],
"refseq_locus_tag":[
"STM3165"
],
"refseq_name":[
"yqhE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3829",
"name":"dgoK",
"notes":{
"original_bigg_ids":[
"STM3829"
]
},
"annotation":{
"ncbigi":[
"16422402"
],
"refseq_locus_tag":[
"STM3829"
],
"refseq_name":[
"dgoK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1288",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1288"
]
},
"annotation":{
"ncbigi":[
"16419805"
],
"refseq_locus_tag":[
"STM1288"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3612",
"name":"kdgK",
"notes":{
"original_bigg_ids":[
"STM3612"
]
},
"annotation":{
"ncbigi":[
"16422175"
],
"refseq_locus_tag":[
"STM3612"
],
"refseq_name":[
"kdgK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4108",
"name":"gldA",
"notes":{
"original_bigg_ids":[
"STM4108"
]
},
"annotation":{
"ncbigi":[
"16422676"
],
"refseq_locus_tag":[
"STM4108"
],
"refseq_name":[
"gldA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1347",
"name":"aroH",
"notes":{
"original_bigg_ids":[
"STM1347"
]
},
"annotation":{
"ncbigi":[
"16419866"
],
"refseq_locus_tag":[
"STM1347"
],
"refseq_name":[
"aroH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3513",
"name":"malQ",
"notes":{
"original_bigg_ids":[
"STM3513"
]
},
"annotation":{
"ncbigi":[
"16422072"
],
"refseq_locus_tag":[
"STM3513"
],
"refseq_name":[
"malQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3554",
"name":"ugpC",
"notes":{
"original_bigg_ids":[
"STM3554"
]
},
"annotation":{
"ncbigi":[
"16422114"
],
"refseq_locus_tag":[
"STM3554"
],
"refseq_name":[
"ugpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3556",
"name":"ugpA",
"notes":{
"original_bigg_ids":[
"STM3556"
]
},
"annotation":{
"ncbigi":[
"16422116"
],
"refseq_locus_tag":[
"STM3556"
],
"refseq_name":[
"ugpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3337",
"name":"nanE",
"notes":{
"original_bigg_ids":[
"STM3337"
]
},
"annotation":{
"ncbigi":[
"16421895"
],
"refseq_locus_tag":[
"STM3337"
],
"refseq_name":[
"nanE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2670",
"name":"aroF",
"notes":{
"original_bigg_ids":[
"STM2670"
]
},
"annotation":{
"ncbigi":[
"16421216"
],
"refseq_locus_tag":[
"STM2670"
],
"refseq_name":[
"aroF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0760",
"name":"aroG",
"notes":{
"original_bigg_ids":[
"STM0760"
]
},
"annotation":{
"ncbigi":[
"16419266"
],
"refseq_locus_tag":[
"STM0760"
],
"refseq_name":[
"aroG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3336",
"name":"nanK",
"notes":{
"original_bigg_ids":[
"STM3336"
]
},
"annotation":{
"ncbigi":[
"16421894"
],
"refseq_locus_tag":[
"STM3336"
],
"refseq_name":[
"nanK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3555",
"name":"ugpE",
"notes":{
"original_bigg_ids":[
"STM3555"
]
},
"annotation":{
"ncbigi":[
"16422115"
],
"refseq_locus_tag":[
"STM3555"
],
"refseq_name":[
"ugpE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0793",
"name":"bioA",
"notes":{
"original_bigg_ids":[
"STM0793"
]
},
"annotation":{
"ncbigi":[
"16419298"
],
"refseq_locus_tag":[
"STM0793"
],
"refseq_name":[
"bioA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3557",
"name":"ugpB",
"notes":{
"original_bigg_ids":[
"STM3557"
]
},
"annotation":{
"ncbigi":[
"16422117"
],
"refseq_locus_tag":[
"STM3557"
],
"refseq_name":[
"ugpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3740",
"name":"gmk",
"notes":{
"original_bigg_ids":[
"STM3740"
]
},
"annotation":{
"ncbigi":[
"16422309"
],
"refseq_locus_tag":[
"STM3740"
],
"refseq_name":[
"gmk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3970",
"name":"ubiE",
"notes":{
"original_bigg_ids":[
"STM3970"
]
},
"annotation":{
"ncbigi":[
"16422535"
],
"refseq_locus_tag":[
"STM3970"
],
"refseq_name":[
"ubiE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3904",
"name":"ilvD",
"notes":{
"original_bigg_ids":[
"STM3904"
]
},
"annotation":{
"ncbigi":[
"16422472"
],
"refseq_locus_tag":[
"STM3904"
],
"refseq_name":[
"ilvD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3700",
"name":"gpsA",
"notes":{
"original_bigg_ids":[
"STM3700"
]
},
"annotation":{
"ncbigi":[
"16422267"
],
"refseq_locus_tag":[
"STM3700"
],
"refseq_name":[
"gpsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4164",
"name":"thiC",
"notes":{
"original_bigg_ids":[
"STM4164"
]
},
"annotation":{
"ncbigi":[
"16422722"
],
"refseq_locus_tag":[
"STM4164"
],
"refseq_name":[
"thiC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2285",
"name":"glpB",
"notes":{
"original_bigg_ids":[
"STM2285"
]
},
"annotation":{
"ncbigi":[
"16420824"
],
"refseq_locus_tag":[
"STM2285"
],
"refseq_name":[
"glpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0598",
"name":"entA",
"notes":{
"original_bigg_ids":[
"STM0598"
]
},
"annotation":{
"ncbigi":[
"16419108"
],
"refseq_locus_tag":[
"STM0598"
],
"refseq_name":[
"entA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2009",
"name":"amn",
"notes":{
"original_bigg_ids":[
"STM2009"
]
},
"annotation":{
"ncbigi":[
"16420540"
],
"refseq_locus_tag":[
"STM2009"
],
"refseq_name":[
"amn"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0596",
"name":"entE",
"notes":{
"original_bigg_ids":[
"STM0596"
]
},
"annotation":{
"ncbigi":[
"16419106"
],
"refseq_locus_tag":[
"STM0596"
],
"refseq_name":[
"entE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0064",
"name":"dapB",
"notes":{
"original_bigg_ids":[
"STM0064"
]
},
"annotation":{
"ncbigi":[
"16418560"
],
"refseq_locus_tag":[
"STM0064"
],
"refseq_name":[
"dapB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1057",
"name":"pepN",
"notes":{
"original_bigg_ids":[
"STM1057"
]
},
"annotation":{
"ncbigi":[
"16419571"
],
"refseq_locus_tag":[
"STM1057"
],
"refseq_name":[
"pepN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2286",
"name":"glpC",
"notes":{
"original_bigg_ids":[
"STM2286"
]
},
"annotation":{
"ncbigi":[
"16420825"
],
"refseq_locus_tag":[
"STM2286"
],
"refseq_name":[
"glpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2536",
"name":"pepB",
"notes":{
"original_bigg_ids":[
"STM2536"
]
},
"annotation":{
"ncbigi":[
"16421081"
],
"refseq_locus_tag":[
"STM2536"
],
"refseq_name":[
"pepB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3526",
"name":"glpD",
"notes":{
"original_bigg_ids":[
"STM3526"
]
},
"annotation":{
"ncbigi":[
"16422085"
],
"refseq_locus_tag":[
"STM3526"
],
"refseq_name":[
"glpD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2489",
"name":"dapA",
"notes":{
"original_bigg_ids":[
"STM2489"
]
},
"annotation":{
"ncbigi":[
"16421031"
],
"refseq_locus_tag":[
"STM2489"
],
"refseq_name":[
"dapA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4477",
"name":"pepA",
"notes":{
"original_bigg_ids":[
"STM4477"
]
},
"annotation":{
"ncbigi":[
"16423042"
],
"refseq_locus_tag":[
"STM4477"
],
"refseq_name":[
"pepA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2284",
"name":"glpA",
"notes":{
"original_bigg_ids":[
"STM2284"
]
},
"annotation":{
"ncbigi":[
"16420823"
],
"refseq_locus_tag":[
"STM2284"
],
"refseq_name":[
"glpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0316",
"name":"pepD",
"notes":{
"original_bigg_ids":[
"STM0316"
]
},
"annotation":{
"ncbigi":[
"16418817"
],
"refseq_locus_tag":[
"STM0316"
],
"refseq_name":[
"pepD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0087",
"name":"folA",
"notes":{
"original_bigg_ids":[
"STM0087"
]
},
"annotation":{
"ncbigi":[
"16418584"
],
"refseq_locus_tag":[
"STM0087"
],
"refseq_name":[
"folA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1446",
"name":"ydhH",
"notes":{
"original_bigg_ids":[
"STM1446"
]
},
"annotation":{
"ncbigi":[
"16419966"
],
"refseq_locus_tag":[
"STM1446"
],
"refseq_name":[
"ydhH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2365",
"name":"folC",
"notes":{
"original_bigg_ids":[
"STM2365"
]
},
"annotation":{
"ncbigi":[
"16420908"
],
"refseq_locus_tag":[
"STM2365"
],
"refseq_name":[
"folC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0322",
"name":"proA",
"notes":{
"original_bigg_ids":[
"STM0322"
]
},
"annotation":{
"ncbigi":[
"16418823"
],
"refseq_locus_tag":[
"STM0322"
],
"refseq_name":[
"proA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1724",
"name":"trpD",
"notes":{
"original_bigg_ids":[
"STM1724"
]
},
"annotation":{
"ncbigi":[
"16420254"
],
"refseq_locus_tag":[
"STM1724"
],
"refseq_name":[
"trpD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0684",
"name":"nagB",
"notes":{
"original_bigg_ids":[
"STM0684"
]
},
"annotation":{
"ncbigi":[
"16419191"
],
"refseq_locus_tag":[
"STM0684"
],
"refseq_name":[
"nagB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1886",
"name":"zwf",
"notes":{
"original_bigg_ids":[
"STM1886"
]
},
"annotation":{
"ncbigi":[
"16420422"
],
"refseq_locus_tag":[
"STM1886"
],
"refseq_name":[
"zwf"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4090",
"name":"menA",
"notes":{
"original_bigg_ids":[
"STM4090"
]
},
"annotation":{
"ncbigi":[
"16422657"
],
"refseq_locus_tag":[
"STM4090"
],
"refseq_name":[
"menA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1723",
"name":"trpE",
"notes":{
"original_bigg_ids":[
"STM1723"
]
},
"annotation":{
"ncbigi":[
"16420253"
],
"refseq_locus_tag":[
"STM1723"
],
"refseq_name":[
"trpE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0795",
"name":"bioF",
"notes":{
"original_bigg_ids":[
"STM0795"
]
},
"annotation":{
"ncbigi":[
"16419300"
],
"refseq_locus_tag":[
"STM0795"
],
"refseq_name":[
"bioF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3206",
"name":"folB",
"notes":{
"original_bigg_ids":[
"STM3206"
]
},
"annotation":{
"ncbigi":[
"16421763"
],
"refseq_locus_tag":[
"STM3206"
],
"refseq_name":[
"folB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0088",
"name":"apaH",
"notes":{
"original_bigg_ids":[
"STM0088"
]
},
"annotation":{
"ncbigi":[
"16418585"
],
"refseq_locus_tag":[
"STM0088"
],
"refseq_name":[
"apaH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1058",
"name":"pyrD",
"notes":{
"original_bigg_ids":[
"STM1058"
]
},
"annotation":{
"ncbigi":[
"16419573"
],
"refseq_locus_tag":[
"STM1058"
],
"refseq_name":[
"pyrD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3827",
"name":"dgoT",
"notes":{
"original_bigg_ids":[
"STM3827"
]
},
"annotation":{
"ncbigi":[
"16422400"
],
"refseq_locus_tag":[
"STM3827"
],
"refseq_name":[
"dgoT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0416",
"name":"ribD",
"notes":{
"original_bigg_ids":[
"STM0416"
]
},
"annotation":{
"ncbigi":[
"16418920"
],
"refseq_locus_tag":[
"STM0416"
],
"refseq_name":[
"ribD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2962",
"name":"gudT",
"notes":{
"original_bigg_ids":[
"STM2962"
]
},
"annotation":{
"ncbigi":[
"16421513"
],
"refseq_locus_tag":[
"STM2962"
],
"refseq_name":[
"gudT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0102",
"name":"araA",
"notes":{
"original_bigg_ids":[
"STM0102"
]
},
"annotation":{
"ncbigi":[
"16418600"
],
"refseq_locus_tag":[
"STM0102"
],
"refseq_name":[
"araA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1163",
"name":"pyrC",
"notes":{
"original_bigg_ids":[
"STM1163"
]
},
"annotation":{
"ncbigi":[
"16419679"
],
"refseq_locus_tag":[
"STM1163"
],
"refseq_name":[
"pyrC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0192",
"name":"fhuC",
"notes":{
"original_bigg_ids":[
"STM0192"
]
},
"annotation":{
"ncbigi":[
"16418695"
],
"refseq_locus_tag":[
"STM0192"
],
"refseq_name":[
"fhuC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3295",
"name":"folP",
"notes":{
"original_bigg_ids":[
"STM3295"
]
},
"annotation":{
"ncbigi":[
"16421853"
],
"refseq_locus_tag":[
"STM3295"
],
"refseq_name":[
"folP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0774",
"name":"galK",
"notes":{
"original_bigg_ids":[
"STM0774"
]
},
"annotation":{
"ncbigi":[
"16419279"
],
"refseq_locus_tag":[
"STM0774"
],
"refseq_name":[
"galK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0194",
"name":"fhuB",
"notes":{
"original_bigg_ids":[
"STM0194"
]
},
"annotation":{
"ncbigi":[
"16418697"
],
"refseq_locus_tag":[
"STM0194"
],
"refseq_name":[
"fhuB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2101",
"name":"wcaK",
"notes":{
"original_bigg_ids":[
"STM2101"
]
},
"annotation":{
"ncbigi":[
"16420634"
],
"refseq_locus_tag":[
"STM2101"
],
"refseq_name":[
"wcaK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0193",
"name":"fhuD",
"notes":{
"original_bigg_ids":[
"STM0193"
]
},
"annotation":{
"ncbigi":[
"16418696"
],
"refseq_locus_tag":[
"STM0193"
],
"refseq_name":[
"fhuD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0773",
"name":"galM",
"notes":{
"original_bigg_ids":[
"STM0773"
]
},
"annotation":{
"ncbigi":[
"16419278"
],
"refseq_locus_tag":[
"STM0773"
],
"refseq_name":[
"galM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3486",
"name":"aroB",
"notes":{
"original_bigg_ids":[
"STM3486"
]
},
"annotation":{
"ncbigi":[
"16422044"
],
"refseq_locus_tag":[
"STM3486"
],
"refseq_name":[
"aroB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3016",
"name":"araE",
"notes":{
"original_bigg_ids":[
"STM3016"
]
},
"annotation":{
"ncbigi":[
"16421566"
],
"refseq_locus_tag":[
"STM3016"
],
"refseq_name":[
"araE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1358",
"name":"aroD",
"notes":{
"original_bigg_ids":[
"STM1358"
]
},
"annotation":{
"ncbigi":[
"16419878"
],
"refseq_locus_tag":[
"STM1358"
],
"refseq_name":[
"aroD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1522",
"name":"ydeA",
"notes":{
"original_bigg_ids":[
"STM1522"
]
},
"annotation":{
"ncbigi":[
"16420043"
],
"refseq_locus_tag":[
"STM1522"
],
"refseq_name":[
"ydeA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4298",
"name":"melA",
"notes":{
"original_bigg_ids":[
"STM4298"
]
},
"annotation":{
"ncbigi":[
"16422859"
],
"refseq_locus_tag":[
"STM4298"
],
"refseq_name":[
"melA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4294",
"name":"yjdE",
"notes":{
"original_bigg_ids":[
"STM4294"
]
},
"annotation":{
"ncbigi":[
"16422855"
],
"refseq_locus_tag":[
"STM4294"
],
"refseq_name":[
"yjdE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3719",
"name":"rfaB",
"notes":{
"original_bigg_ids":[
"STM3719"
]
},
"annotation":{
"ncbigi":[
"16422287"
],
"refseq_locus_tag":[
"STM3719"
],
"refseq_name":[
"rfaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0423",
"name":"ispA",
"notes":{
"original_bigg_ids":[
"STM0423"
]
},
"annotation":{
"ncbigi":[
"16418928"
],
"refseq_locus_tag":[
"STM0423"
],
"refseq_name":[
"ispA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4296",
"name":"adi",
"notes":{
"original_bigg_ids":[
"STM4296"
]
},
"annotation":{
"ncbigi":[
"16422857"
],
"refseq_locus_tag":[
"STM4296"
],
"refseq_name":[
"adi"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0049",
"name":"lytB",
"notes":{
"original_bigg_ids":[
"STM0049"
]
},
"annotation":{
"ncbigi":[
"16418544"
],
"refseq_locus_tag":[
"STM0049"
],
"refseq_name":[
"lytB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3086",
"name":"speA",
"notes":{
"original_bigg_ids":[
"STM3086"
]
},
"annotation":{
"ncbigi":[
"16421639"
],
"refseq_locus_tag":[
"STM3086"
],
"refseq_name":[
"speA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3134",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3134"
]
},
"annotation":{
"ncbigi":[
"16421688"
],
"refseq_locus_tag":[
"STM3134"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1477",
"name":"ydgI",
"notes":{
"original_bigg_ids":[
"STM1477"
]
},
"annotation":{
"ncbigi":[
"16419996"
],
"refseq_locus_tag":[
"STM1477"
],
"refseq_name":[
"ydgI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1752",
"name":"galU",
"notes":{
"original_bigg_ids":[
"STM1752"
]
},
"annotation":{
"ncbigi":[
"16420284"
],
"refseq_locus_tag":[
"STM1752"
],
"refseq_name":[
"galU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2276",
"name":"ubiG",
"notes":{
"original_bigg_ids":[
"STM2276"
]
},
"annotation":{
"ncbigi":[
"16420815"
],
"refseq_locus_tag":[
"STM2276"
],
"refseq_name":[
"ubiG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4123",
"name":"argH",
"notes":{
"original_bigg_ids":[
"STM4123"
]
},
"annotation":{
"ncbigi":[
"16422690"
],
"refseq_locus_tag":[
"STM4123"
],
"refseq_name":[
"argH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1900",
"name":"ntpA",
"notes":{
"original_bigg_ids":[
"STM1900"
]
},
"annotation":{
"ncbigi":[
"16420436"
],
"refseq_locus_tag":[
"STM1900"
],
"refseq_name":[
"ntpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2098",
"name":"galF",
"notes":{
"original_bigg_ids":[
"STM2098"
]
},
"annotation":{
"ncbigi":[
"16420631"
],
"refseq_locus_tag":[
"STM2098"
],
"refseq_name":[
"galF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1909",
"name":"argS",
"notes":{
"original_bigg_ids":[
"STM1909"
]
},
"annotation":{
"ncbigi":[
"16420446"
],
"refseq_locus_tag":[
"STM1909"
],
"refseq_name":[
"argS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2353",
"name":"hisQ",
"notes":{
"original_bigg_ids":[
"STM2353"
]
},
"annotation":{
"ncbigi":[
"16420895"
],
"refseq_locus_tag":[
"STM2353"
],
"refseq_name":[
"hisQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2190",
"name":"mglB",
"notes":{
"original_bigg_ids":[
"STM2190"
]
},
"annotation":{
"ncbigi":[
"16420727"
],
"refseq_locus_tag":[
"STM2190"
],
"refseq_name":[
"mglB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2189",
"name":"mglA",
"notes":{
"original_bigg_ids":[
"STM2189"
]
},
"annotation":{
"ncbigi":[
"16420726"
],
"refseq_locus_tag":[
"STM2189"
],
"refseq_name":[
"mglA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0137",
"name":"mutT",
"notes":{
"original_bigg_ids":[
"STM0137"
]
},
"annotation":{
"ncbigi":[
"16418637"
],
"refseq_locus_tag":[
"STM0137"
],
"refseq_name":[
"mutT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2355",
"name":"argT",
"notes":{
"original_bigg_ids":[
"STM2355"
]
},
"annotation":{
"ncbigi":[
"16420898"
],
"refseq_locus_tag":[
"STM2355"
],
"refseq_name":[
"argT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3668",
"name":"yiaK",
"notes":{
"original_bigg_ids":[
"STM3668"
]
},
"annotation":{
"ncbigi":[
"16422233"
],
"refseq_locus_tag":[
"STM3668"
],
"refseq_name":[
"yiaK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2188",
"name":"mglC",
"notes":{
"original_bigg_ids":[
"STM2188"
]
},
"annotation":{
"ncbigi":[
"16420725"
],
"refseq_locus_tag":[
"STM2188"
],
"refseq_name":[
"mglC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0889",
"name":"artQ",
"notes":{
"original_bigg_ids":[
"STM0889"
]
},
"annotation":{
"ncbigi":[
"16419397"
],
"refseq_locus_tag":[
"STM0889"
],
"refseq_name":[
"artQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3091",
"name":"galP",
"notes":{
"original_bigg_ids":[
"STM3091"
]
},
"annotation":{
"ncbigi":[
"16421644"
],
"refseq_locus_tag":[
"STM3091"
],
"refseq_name":[
"galP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0890",
"name":"artI",
"notes":{
"original_bigg_ids":[
"STM0890"
]
},
"annotation":{
"ncbigi":[
"16419398"
],
"refseq_locus_tag":[
"STM0890"
],
"refseq_name":[
"artI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1290",
"name":"gapA",
"notes":{
"original_bigg_ids":[
"STM1290"
]
},
"annotation":{
"ncbigi":[
"16419807"
],
"refseq_locus_tag":[
"STM1290"
],
"refseq_name":[
"gapA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0140",
"name":"yacE",
"notes":{
"original_bigg_ids":[
"STM0140"
]
},
"annotation":{
"ncbigi":[
"16418640"
],
"refseq_locus_tag":[
"STM0140"
],
"refseq_name":[
"yacE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0891",
"name":"artP",
"notes":{
"original_bigg_ids":[
"STM0891"
]
},
"annotation":{
"ncbigi":[
"16419399"
],
"refseq_locus_tag":[
"STM0891"
],
"refseq_name":[
"artP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0887",
"name":"artJ",
"notes":{
"original_bigg_ids":[
"STM0887"
]
},
"annotation":{
"ncbigi":[
"16419395"
],
"refseq_locus_tag":[
"STM0887"
],
"refseq_name":[
"artJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2500",
"name":"purN",
"notes":{
"original_bigg_ids":[
"STM2500"
]
},
"annotation":{
"ncbigi":[
"16421042"
],
"refseq_locus_tag":[
"STM2500"
],
"refseq_name":[
"purN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2352",
"name":"hisM",
"notes":{
"original_bigg_ids":[
"STM2352"
]
},
"annotation":{
"ncbigi":[
"16420894"
],
"refseq_locus_tag":[
"STM2352"
],
"refseq_name":[
"hisM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0888",
"name":"artM",
"notes":{
"original_bigg_ids":[
"STM0888"
]
},
"annotation":{
"ncbigi":[
"16419396"
],
"refseq_locus_tag":[
"STM0888"
],
"refseq_name":[
"artM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2108",
"name":"wcaG",
"notes":{
"original_bigg_ids":[
"STM2108"
]
},
"annotation":{
"ncbigi":[
"16420641"
],
"refseq_locus_tag":[
"STM2108"
],
"refseq_name":[
"wcaG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2351",
"name":"hisP",
"notes":{
"original_bigg_ids":[
"STM2351"
]
},
"annotation":{
"ncbigi":[
"16420893"
],
"refseq_locus_tag":[
"STM2351"
],
"refseq_name":[
"hisP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2956",
"name":"relA",
"notes":{
"original_bigg_ids":[
"STM2956"
]
},
"annotation":{
"ncbigi":[
"16421507"
],
"refseq_locus_tag":[
"STM2956"
],
"refseq_name":[
"relA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3066",
"name":"yggA",
"notes":{
"original_bigg_ids":[
"STM3066"
]
},
"annotation":{
"ncbigi":[
"16421618"
],
"refseq_locus_tag":[
"STM3066"
],
"refseq_name":[
"yggA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3742",
"name":"spoT",
"notes":{
"original_bigg_ids":[
"STM3742"
]
},
"annotation":{
"ncbigi":[
"16422311"
],
"refseq_locus_tag":[
"STM3742"
],
"refseq_name":[
"spoT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3539",
"name":"asd",
"notes":{
"original_bigg_ids":[
"STM3539"
]
},
"annotation":{
"ncbigi":[
"16422098"
],
"refseq_locus_tag":[
"STM3539"
],
"refseq_name":[
"asd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2107",
"name":"wcaH",
"notes":{
"original_bigg_ids":[
"STM2107"
]
},
"annotation":{
"ncbigi":[
"16420640"
],
"refseq_locus_tag":[
"STM2107"
],
"refseq_name":[
"wcaH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4382",
"name":"yjfR",
"notes":{
"original_bigg_ids":[
"STM4382"
]
},
"annotation":{
"ncbigi":[
"16422943"
],
"refseq_locus_tag":[
"STM4382"
],
"refseq_name":[
"yjfR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2477",
"name":"yffH",
"notes":{
"original_bigg_ids":[
"STM2477"
]
},
"annotation":{
"ncbigi":[
"16421018"
],
"refseq_locus_tag":[
"STM2477"
],
"refseq_name":[
"yffH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3861",
"name":"glmS",
"notes":{
"original_bigg_ids":[
"STM3861"
]
},
"annotation":{
"ncbigi":[
"16422435"
],
"refseq_locus_tag":[
"STM3861"
],
"refseq_name":[
"glmS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4385",
"name":"ptxA",
"notes":{
"original_bigg_ids":[
"STM4385"
]
},
"annotation":{
"ncbigi":[
"16422946"
],
"refseq_locus_tag":[
"STM4385"
],
"refseq_name":[
"ptxA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3538",
"name":"glgB",
"notes":{
"original_bigg_ids":[
"STM3538"
]
},
"annotation":{
"ncbigi":[
"16422097"
],
"refseq_locus_tag":[
"STM3538"
],
"refseq_name":[
"glgB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4384",
"name":"sgaB",
"notes":{
"original_bigg_ids":[
"STM4384"
]
},
"annotation":{
"ncbigi":[
"16422945"
],
"refseq_locus_tag":[
"STM4384"
],
"refseq_name":[
"sgaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0847",
"name":"ybiK",
"notes":{
"original_bigg_ids":[
"STM0847"
]
},
"annotation":{
"ncbigi":[
"16419354"
],
"refseq_locus_tag":[
"STM0847"
],
"refseq_name":[
"ybiK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0472",
"name":"maa",
"notes":{
"original_bigg_ids":[
"STM0472"
]
},
"annotation":{
"ncbigi":[
"16418979"
],
"refseq_locus_tag":[
"STM0472"
],
"refseq_name":[
"maa"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3598",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3598"
]
},
"annotation":{
"ncbigi":[
"16422160"
],
"refseq_locus_tag":[
"STM3598"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0169",
"name":"gcd",
"notes":{
"original_bigg_ids":[
"STM0169"
]
},
"annotation":{
"ncbigi":[
"16418671"
],
"refseq_locus_tag":[
"STM0169"
],
"refseq_name":[
"gcd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1294",
"name":"ansA",
"notes":{
"original_bigg_ids":[
"STM1294"
]
},
"annotation":{
"ncbigi":[
"16419811"
],
"refseq_locus_tag":[
"STM1294"
],
"refseq_name":[
"ansA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4567",
"name":"deoC",
"notes":{
"original_bigg_ids":[
"STM4567"
]
},
"annotation":{
"ncbigi":[
"16423132"
],
"refseq_locus_tag":[
"STM4567"
],
"refseq_name":[
"deoC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3106",
"name":"ansB",
"notes":{
"original_bigg_ids":[
"STM3106"
]
},
"annotation":{
"ncbigi":[
"16421659"
],
"refseq_locus_tag":[
"STM3106"
],
"refseq_name":[
"ansB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0861",
"name":"yliI",
"notes":{
"original_bigg_ids":[
"STM0861"
]
},
"annotation":{
"ncbigi":[
"16419369"
],
"refseq_locus_tag":[
"STM0861"
],
"refseq_name":[
"yliI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0680",
"name":"asnB",
"notes":{
"original_bigg_ids":[
"STM0680"
]
},
"annotation":{
"ncbigi":[
"16419187"
],
"refseq_locus_tag":[
"STM0680"
],
"refseq_name":[
"asnB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3512",
"name":"gntT",
"notes":{
"original_bigg_ids":[
"STM3512"
]
},
"annotation":{
"ncbigi":[
"16422071"
],
"refseq_locus_tag":[
"STM3512"
],
"refseq_name":[
"gntT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3541",
"name":"gntU",
"notes":{
"original_bigg_ids":[
"STM3541"
]
},
"annotation":{
"ncbigi":[
"16422100"
],
"refseq_locus_tag":[
"STM3541"
],
"refseq_name":[
"gntU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3997",
"name":"dsbA",
"notes":{
"original_bigg_ids":[
"STM3997"
]
},
"annotation":{
"ncbigi":[
"16422558"
],
"refseq_locus_tag":[
"STM3997"
],
"refseq_name":[
"dsbA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3877",
"name":"asnA",
"notes":{
"original_bigg_ids":[
"STM3877"
]
},
"annotation":{
"ncbigi":[
"16422452"
],
"refseq_locus_tag":[
"STM3877"
],
"refseq_name":[
"asnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1807",
"name":"dsbB",
"notes":{
"original_bigg_ids":[
"STM1807"
]
},
"annotation":{
"ncbigi":[
"16420338"
],
"refseq_locus_tag":[
"STM1807"
],
"refseq_name":[
"dsbB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3534",
"name":"glgP",
"notes":{
"original_bigg_ids":[
"STM3534"
]
},
"annotation":{
"ncbigi":[
"16422093"
],
"refseq_locus_tag":[
"STM3534"
],
"refseq_name":[
"glgP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3514",
"name":"malP",
"notes":{
"original_bigg_ids":[
"STM3514"
]
},
"annotation":{
"ncbigi":[
"16422073"
],
"refseq_locus_tag":[
"STM3514"
],
"refseq_name":[
"malP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1000",
"name":"asnS",
"notes":{
"original_bigg_ids":[
"STM1000"
]
},
"annotation":{
"ncbigi":[
"16419513"
],
"refseq_locus_tag":[
"STM1000"
],
"refseq_name":[
"asnS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3249",
"name":"garL",
"notes":{
"original_bigg_ids":[
"STM3249"
]
},
"annotation":{
"ncbigi":[
"16421806"
],
"refseq_locus_tag":[
"STM3249"
],
"refseq_name":[
"garL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3043",
"name":"dsbC",
"notes":{
"original_bigg_ids":[
"STM3043"
]
},
"annotation":{
"ncbigi":[
"16421594"
],
"refseq_locus_tag":[
"STM3043"
],
"refseq_name":[
"dsbC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1584",
"name":"ansP",
"notes":{
"original_bigg_ids":[
"STM1584"
]
},
"annotation":{
"ncbigi":[
"16420107"
],
"refseq_locus_tag":[
"STM1584"
],
"refseq_name":[
"ansP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2961",
"name":"ygcY",
"notes":{
"original_bigg_ids":[
"STM2961"
]
},
"annotation":{
"ncbigi":[
"16421512"
],
"refseq_locus_tag":[
"STM2961"
],
"refseq_name":[
"ygcY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2960",
"name":"gudD",
"notes":{
"original_bigg_ids":[
"STM2960"
]
},
"annotation":{
"ncbigi":[
"16421511"
],
"refseq_locus_tag":[
"STM2960"
],
"refseq_name":[
"gudD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0180",
"name":"panD",
"notes":{
"original_bigg_ids":[
"STM0180"
]
},
"annotation":{
"ncbigi":[
"16418682"
],
"refseq_locus_tag":[
"STM0180"
],
"refseq_name":[
"panD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3535",
"name":"glgA",
"notes":{
"original_bigg_ids":[
"STM3535"
]
},
"annotation":{
"ncbigi":[
"16422094"
],
"refseq_locus_tag":[
"STM3535"
],
"refseq_name":[
"glgA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3722",
"name":"rfaG",
"notes":{
"original_bigg_ids":[
"STM3722"
]
},
"annotation":{
"ncbigi":[
"16422290"
],
"refseq_locus_tag":[
"STM3722"
],
"refseq_name":[
"rfaG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4323",
"name":"dsbD",
"notes":{
"original_bigg_ids":[
"STM4323"
]
},
"annotation":{
"ncbigi":[
"16422885"
],
"refseq_locus_tag":[
"STM4323"
],
"refseq_name":[
"dsbD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3915",
"name":"trxA",
"notes":{
"original_bigg_ids":[
"STM3915"
]
},
"annotation":{
"ncbigi":[
"16422483"
],
"refseq_locus_tag":[
"STM3915"
],
"refseq_name":[
"trxA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4459",
"name":"pyrI",
"notes":{
"original_bigg_ids":[
"STM4459"
]
},
"annotation":{
"ncbigi":[
"16423023"
],
"refseq_locus_tag":[
"STM4459"
],
"refseq_name":[
"pyrI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2649",
"name":"trxC",
"notes":{
"original_bigg_ids":[
"STM2649"
]
},
"annotation":{
"ncbigi":[
"16421199"
],
"refseq_locus_tag":[
"STM2649"
],
"refseq_name":[
"trxC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3718",
"name":"rfaI",
"notes":{
"original_bigg_ids":[
"STM3718"
]
},
"annotation":{
"ncbigi":[
"16422286"
],
"refseq_locus_tag":[
"STM3718"
],
"refseq_name":[
"rfaI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3717",
"name":"rfaJ",
"notes":{
"original_bigg_ids":[
"STM3717"
]
},
"annotation":{
"ncbigi":[
"16422285"
],
"refseq_locus_tag":[
"STM3717"
],
"refseq_name":[
"rfaJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4460",
"name":"pyrB",
"notes":{
"original_bigg_ids":[
"STM4460"
]
},
"annotation":{
"ncbigi":[
"16423024"
],
"refseq_locus_tag":[
"STM4460"
],
"refseq_name":[
"pyrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4101",
"name":"metL",
"notes":{
"original_bigg_ids":[
"STM4101"
]
},
"annotation":{
"ncbigi":[
"16422668"
],
"refseq_locus_tag":[
"STM4101"
],
"refseq_name":[
"metL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0161",
"name":"kdgT",
"notes":{
"original_bigg_ids":[
"STM0161"
]
},
"annotation":{
"ncbigi":[
"16418662"
],
"refseq_locus_tag":[
"STM0161"
],
"refseq_name":[
"kdgT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0607",
"name":"dsbG",
"notes":{
"original_bigg_ids":[
"STM0607"
]
},
"annotation":{
"ncbigi":[
"16419118"
],
"refseq_locus_tag":[
"STM0607"
],
"refseq_name":[
"dsbG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0002",
"name":"thrA",
"notes":{
"original_bigg_ids":[
"STM0002"
]
},
"annotation":{
"ncbigi":[
"16418495"
],
"refseq_locus_tag":[
"STM0002"
],
"refseq_name":[
"thrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1200",
"name":"tmk",
"notes":{
"original_bigg_ids":[
"STM1200"
]
},
"annotation":{
"ncbigi":[
"16419717"
],
"refseq_locus_tag":[
"STM1200"
],
"refseq_name":[
"tmk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1750",
"name":"tdk",
"notes":{
"original_bigg_ids":[
"STM1750"
]
},
"annotation":{
"ncbigi":[
"16420282"
],
"refseq_locus_tag":[
"STM1750"
],
"refseq_name":[
"tdk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4220",
"name":"lysC",
"notes":{
"original_bigg_ids":[
"STM4220"
]
},
"annotation":{
"ncbigi":[
"16422777"
],
"refseq_locus_tag":[
"STM4220"
],
"refseq_name":[
"lysC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4568",
"name":"deoA",
"notes":{
"original_bigg_ids":[
"STM4568"
]
},
"annotation":{
"ncbigi":[
"16423134"
],
"refseq_locus_tag":[
"STM4568"
],
"refseq_name":[
"deoA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2641",
"name":"nadB",
"notes":{
"original_bigg_ids":[
"STM2641"
]
},
"annotation":{
"ncbigi":[
"16421191"
],
"refseq_locus_tag":[
"STM2641"
],
"refseq_name":[
"nadB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4570",
"name":"deoD",
"notes":{
"original_bigg_ids":[
"STM4570"
]
},
"annotation":{
"ncbigi":[
"16423136"
],
"refseq_locus_tag":[
"STM4570"
],
"refseq_name":[
"deoD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4326",
"name":"aspA",
"notes":{
"original_bigg_ids":[
"STM4326"
]
},
"annotation":{
"ncbigi":[
"16422888"
],
"refseq_locus_tag":[
"STM4326"
],
"refseq_name":[
"aspA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3731",
"name":"dut",
"notes":{
"original_bigg_ids":[
"STM3731"
]
},
"annotation":{
"ncbigi":[
"16422299"
],
"refseq_locus_tag":[
"STM3731"
],
"refseq_name":[
"dut"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0998",
"name":"aspC",
"notes":{
"original_bigg_ids":[
"STM0998"
]
},
"annotation":{
"ncbigi":[
"16419511"
],
"refseq_locus_tag":[
"STM0998"
],
"refseq_name":[
"aspC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0220",
"name":"dxr",
"notes":{
"original_bigg_ids":[
"STM0220"
]
},
"annotation":{
"ncbigi":[
"16418725"
],
"refseq_locus_tag":[
"STM0220"
],
"refseq_name":[
"dxr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1901",
"name":"aspS",
"notes":{
"original_bigg_ids":[
"STM1901"
]
},
"annotation":{
"ncbigi":[
"16420437"
],
"refseq_locus_tag":[
"STM1901"
],
"refseq_name":[
"aspS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0422",
"name":"dxs",
"notes":{
"original_bigg_ids":[
"STM0422"
]
},
"annotation":{
"ncbigi":[
"16418927"
],
"refseq_locus_tag":[
"STM0422"
],
"refseq_name":[
"dxs"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0664",
"name":"gltJ",
"notes":{
"original_bigg_ids":[
"STM0664"
]
},
"annotation":{
"ncbigi":[
"16419177"
],
"refseq_locus_tag":[
"STM0664"
],
"refseq_name":[
"gltJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0663",
"name":"gltK",
"notes":{
"original_bigg_ids":[
"STM0663"
]
},
"annotation":{
"ncbigi":[
"16419176"
],
"refseq_locus_tag":[
"STM0663"
],
"refseq_name":[
"gltK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3660",
"name":"xylB",
"notes":{
"original_bigg_ids":[
"STM3660"
]
},
"annotation":{
"ncbigi":[
"16422224"
],
"refseq_locus_tag":[
"STM3660"
],
"refseq_name":[
"xylB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0662",
"name":"gltL",
"notes":{
"original_bigg_ids":[
"STM0662"
]
},
"annotation":{
"ncbigi":[
"16419175"
],
"refseq_locus_tag":[
"STM0662"
],
"refseq_name":[
"gltL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0665",
"name":"gltI",
"notes":{
"original_bigg_ids":[
"STM0665"
]
},
"annotation":{
"ncbigi":[
"16419178"
],
"refseq_locus_tag":[
"STM0665"
],
"refseq_name":[
"gltI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3692",
"name":"lldP",
"notes":{
"original_bigg_ids":[
"STM3692"
]
},
"annotation":{
"ncbigi":[
"16422258"
],
"refseq_locus_tag":[
"STM3692"
],
"refseq_name":[
"lldP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3614",
"name":"dctA",
"notes":{
"original_bigg_ids":[
"STM3614"
]
},
"annotation":{
"ncbigi":[
"16422177"
],
"refseq_locus_tag":[
"STM3614"
],
"refseq_name":[
"dctA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3070",
"name":"epd",
"notes":{
"original_bigg_ids":[
"STM3070"
]
},
"annotation":{
"ncbigi":[
"16421622"
],
"refseq_locus_tag":[
"STM3070"
],
"refseq_name":[
"epd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4283",
"name":"gltP",
"notes":{
"original_bigg_ids":[
"STM4283"
]
},
"annotation":{
"ncbigi":[
"16422844"
],
"refseq_locus_tag":[
"STM4283"
],
"refseq_name":[
"gltP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1700",
"name":"fabI",
"notes":{
"original_bigg_ids":[
"STM1700"
]
},
"annotation":{
"ncbigi":[
"16420229"
],
"refseq_locus_tag":[
"STM1700"
],
"refseq_name":[
"fabI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1304",
"name":"astA",
"notes":{
"original_bigg_ids":[
"STM1304"
]
},
"annotation":{
"ncbigi":[
"16419821"
],
"refseq_locus_tag":[
"STM1304"
],
"refseq_name":[
"astA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3713",
"name":"rfaL",
"notes":{
"original_bigg_ids":[
"STM3713"
]
},
"annotation":{
"ncbigi":[
"16422280"
],
"refseq_locus_tag":[
"STM3713"
],
"refseq_name":[
"rfaL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1511",
"name":"ydfG",
"notes":{
"original_bigg_ids":[
"STM1511"
]
},
"annotation":{
"ncbigi":[
"16420032"
],
"refseq_locus_tag":[
"STM1511"
],
"refseq_name":[
"ydfG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3928",
"name":"wecF",
"notes":{
"original_bigg_ids":[
"STM3928"
]
},
"annotation":{
"ncbigi":[
"16422496"
],
"refseq_locus_tag":[
"STM3928"
],
"refseq_name":[
"wecF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2071",
"name":"hisG",
"notes":{
"original_bigg_ids":[
"STM2071"
]
},
"annotation":{
"ncbigi":[
"16420602"
],
"refseq_locus_tag":[
"STM2071"
],
"refseq_name":[
"hisG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3919",
"name":"wzzE",
"notes":{
"original_bigg_ids":[
"STM3919"
]
},
"annotation":{
"ncbigi":[
"16422487"
],
"refseq_locus_tag":[
"STM3919"
],
"refseq_name":[
"wzzE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3926",
"name":"wzxE",
"notes":{
"original_bigg_ids":[
"STM3926"
]
},
"annotation":{
"ncbigi":[
"16422494"
],
"refseq_locus_tag":[
"STM3926"
],
"refseq_name":[
"wzxE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2388",
"name":"yfcX",
"notes":{
"original_bigg_ids":[
"STM2388"
]
},
"annotation":{
"ncbigi":[
"16420932"
],
"refseq_locus_tag":[
"STM2388"
],
"refseq_name":[
"yfcX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3866",
"name":"atpG",
"notes":{
"original_bigg_ids":[
"STM3866"
]
},
"annotation":{
"ncbigi":[
"16422440"
],
"refseq_locus_tag":[
"STM3866"
],
"refseq_name":[
"atpG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3869",
"name":"atpF",
"notes":{
"original_bigg_ids":[
"STM3869"
]
},
"annotation":{
"ncbigi":[
"16422443"
],
"refseq_locus_tag":[
"STM3869"
],
"refseq_name":[
"atpF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3983",
"name":"fadB",
"notes":{
"original_bigg_ids":[
"STM3983"
]
},
"annotation":{
"ncbigi":[
"16422549"
],
"refseq_locus_tag":[
"STM3983"
],
"refseq_name":[
"fadB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3867",
"name":"atpA",
"notes":{
"original_bigg_ids":[
"STM3867"
]
},
"annotation":{
"ncbigi":[
"16422441"
],
"refseq_locus_tag":[
"STM3867"
],
"refseq_name":[
"atpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1884",
"name":"eda",
"notes":{
"original_bigg_ids":[
"STM1884"
]
},
"annotation":{
"ncbigi":[
"16420420"
],
"refseq_locus_tag":[
"STM1884"
],
"refseq_name":[
"eda"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3872",
"name":"atpI",
"notes":{
"original_bigg_ids":[
"STM3872"
]
},
"annotation":{
"ncbigi":[
"16422446"
],
"refseq_locus_tag":[
"STM3872"
],
"refseq_name":[
"atpI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1885",
"name":"edd",
"notes":{
"original_bigg_ids":[
"STM1885"
]
},
"annotation":{
"ncbigi":[
"16420421"
],
"refseq_locus_tag":[
"STM1885"
],
"refseq_name":[
"edd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3865",
"name":"atpD",
"notes":{
"original_bigg_ids":[
"STM3865"
]
},
"annotation":{
"ncbigi":[
"16422439"
],
"refseq_locus_tag":[
"STM3865"
],
"refseq_name":[
"atpD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1465",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1465"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM3868",
"name":"atpH",
"notes":{
"original_bigg_ids":[
"STM3868"
]
},
"annotation":{
"ncbigi":[
"16422442"
],
"refseq_locus_tag":[
"STM3868"
],
"refseq_name":[
"atpH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3871",
"name":"atpB",
"notes":{
"original_bigg_ids":[
"STM3871"
]
},
"annotation":{
"ncbigi":[
"16422445"
],
"refseq_locus_tag":[
"STM3871"
],
"refseq_name":[
"atpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3537",
"name":"glgX",
"notes":{
"original_bigg_ids":[
"STM3537"
]
},
"annotation":{
"ncbigi":[
"16422096"
],
"refseq_locus_tag":[
"STM3537"
],
"refseq_name":[
"glgX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1155",
"name":"htrB",
"notes":{
"original_bigg_ids":[
"STM1155"
]
},
"annotation":{
"ncbigi":[
"16419671"
],
"refseq_locus_tag":[
"STM1155"
],
"refseq_name":[
"htrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3864",
"name":"atpC",
"notes":{
"original_bigg_ids":[
"STM3864"
]
},
"annotation":{
"ncbigi":[
"16422438"
],
"refseq_locus_tag":[
"STM3864"
],
"refseq_name":[
"atpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3536",
"name":"glgC",
"notes":{
"original_bigg_ids":[
"STM3536"
]
},
"annotation":{
"ncbigi":[
"16422095"
],
"refseq_locus_tag":[
"STM3536"
],
"refseq_name":[
"glgC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3870",
"name":"atpE",
"notes":{
"original_bigg_ids":[
"STM3870"
]
},
"annotation":{
"ncbigi":[
"16422444"
],
"refseq_locus_tag":[
"STM3870"
],
"refseq_name":[
"atpE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4007",
"name":"glnA",
"notes":{
"original_bigg_ids":[
"STM4007"
]
},
"annotation":{
"ncbigi":[
"16422569"
],
"refseq_locus_tag":[
"STM4007"
],
"refseq_name":[
"glnA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3644",
"name":"bisC",
"notes":{
"original_bigg_ids":[
"STM3644"
]
},
"annotation":{
"ncbigi":[
"16422209"
],
"refseq_locus_tag":[
"STM3644"
],
"refseq_name":[
"bisC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1889",
"name":"msbB",
"notes":{
"original_bigg_ids":[
"STM1889"
]
},
"annotation":{
"ncbigi":[
"16420425"
],
"refseq_locus_tag":[
"STM1889"
],
"refseq_name":[
"msbB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0794",
"name":"bioB",
"notes":{
"original_bigg_ids":[
"STM0794"
]
},
"annotation":{
"ncbigi":[
"16419299"
],
"refseq_locus_tag":[
"STM0794"
],
"refseq_name":[
"bioB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0686",
"name":"glnS",
"notes":{
"original_bigg_ids":[
"STM0686"
]
},
"annotation":{
"ncbigi":[
"16419193"
],
"refseq_locus_tag":[
"STM0686"
],
"refseq_name":[
"glnS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1771",
"name":"chaA",
"notes":{
"original_bigg_ids":[
"STM1771"
]
},
"annotation":{
"ncbigi":[
"16420301"
],
"refseq_locus_tag":[
"STM1771"
],
"refseq_name":[
"chaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0829",
"name":"glnP",
"notes":{
"original_bigg_ids":[
"STM0829"
]
},
"annotation":{
"ncbigi":[
"16419335"
],
"refseq_locus_tag":[
"STM0829"
],
"refseq_name":[
"glnP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2401",
"name":"ddg",
"notes":{
"original_bigg_ids":[
"STM2401"
]
},
"annotation":{
"ncbigi":[
"16420945"
],
"refseq_locus_tag":[
"STM2401"
],
"refseq_name":[
"ddg"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2952",
"name":"eno",
"notes":{
"original_bigg_ids":[
"STM2952"
]
},
"annotation":{
"ncbigi":[
"16421503"
],
"refseq_locus_tag":[
"STM2952"
],
"refseq_name":[
"eno"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2558",
"name":"cadB",
"notes":{
"original_bigg_ids":[
"STM2558"
]
},
"annotation":{
"ncbigi":[
"16421104"
],
"refseq_locus_tag":[
"STM2558"
],
"refseq_name":[
"cadB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0584",
"name":"entD",
"notes":{
"original_bigg_ids":[
"STM0584"
]
},
"annotation":{
"ncbigi":[
"16419094"
],
"refseq_locus_tag":[
"STM0584"
],
"refseq_name":[
"entD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2458",
"name":"eutB",
"notes":{
"original_bigg_ids":[
"STM2458"
]
},
"annotation":{
"ncbigi":[
"16420998"
],
"refseq_locus_tag":[
"STM2458"
],
"refseq_name":[
"eutB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0828",
"name":"glnQ",
"notes":{
"original_bigg_ids":[
"STM0828"
]
},
"annotation":{
"ncbigi":[
"16419334"
],
"refseq_locus_tag":[
"STM0828"
],
"refseq_name":[
"glnQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0830",
"name":"glnH",
"notes":{
"original_bigg_ids":[
"STM0830"
]
},
"annotation":{
"ncbigi":[
"16419336"
],
"refseq_locus_tag":[
"STM0830"
],
"refseq_name":[
"glnH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3314",
"name":"yrbG",
"notes":{
"original_bigg_ids":[
"STM3314"
]
},
"annotation":{
"ncbigi":[
"16421871"
],
"refseq_locus_tag":[
"STM3314"
],
"refseq_name":[
"yrbG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0321",
"name":"proB",
"notes":{
"original_bigg_ids":[
"STM0321"
]
},
"annotation":{
"ncbigi":[
"16418822"
],
"refseq_locus_tag":[
"STM0321"
],
"refseq_name":[
"proB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2457",
"name":"eutC",
"notes":{
"original_bigg_ids":[
"STM2457"
]
},
"annotation":{
"ncbigi":[
"16420997"
],
"refseq_locus_tag":[
"STM2457"
],
"refseq_name":[
"eutC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1718",
"name":"btuR",
"notes":{
"original_bigg_ids":[
"STM1718"
]
},
"annotation":{
"ncbigi":[
"16420248"
],
"refseq_locus_tag":[
"STM1718"
],
"refseq_name":[
"btuR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2460",
"name":"eutH",
"notes":{
"original_bigg_ids":[
"STM2460"
]
},
"annotation":{
"ncbigi":[
"16421000"
],
"refseq_locus_tag":[
"STM2460"
],
"refseq_name":[
"eutH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4109",
"name":"talC",
"notes":{
"original_bigg_ids":[
"STM4109"
]
},
"annotation":{
"ncbigi":[
"16422677"
],
"refseq_locus_tag":[
"STM4109"
],
"refseq_name":[
"talC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2818",
"name":"gshA",
"notes":{
"original_bigg_ids":[
"STM2818"
]
},
"annotation":{
"ncbigi":[
"16421367"
],
"refseq_locus_tag":[
"STM2818"
],
"refseq_name":[
"gshA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0330",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0330"
]
},
"annotation":{
"ncbigi":[
"16418830"
],
"refseq_locus_tag":[
"STM0330"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1299",
"name":"gdhA",
"notes":{
"original_bigg_ids":[
"STM1299"
]
},
"annotation":{
"ncbigi":[
"16419816"
],
"refseq_locus_tag":[
"STM1299"
],
"refseq_name":[
"gdhA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1525",
"name":"yneH",
"notes":{
"original_bigg_ids":[
"STM1525"
]
},
"annotation":{
"ncbigi":[
"16420046"
],
"refseq_locus_tag":[
"STM1525"
],
"refseq_name":[
"yneH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2362",
"name":"purF",
"notes":{
"original_bigg_ids":[
"STM2362"
]
},
"annotation":{
"ncbigi":[
"16420905"
],
"refseq_locus_tag":[
"STM2362"
],
"refseq_name":[
"purF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4131",
"name":"murI",
"notes":{
"original_bigg_ids":[
"STM4131"
]
},
"annotation":{
"ncbigi":[
"16422698"
],
"refseq_locus_tag":[
"STM4131"
],
"refseq_name":[
"murI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3331",
"name":"gltD",
"notes":{
"original_bigg_ids":[
"STM3331"
]
},
"annotation":{
"ncbigi":[
"16421889"
],
"refseq_locus_tag":[
"STM3331"
],
"refseq_name":[
"gltD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3330",
"name":"gltB",
"notes":{
"original_bigg_ids":[
"STM3330"
]
},
"annotation":{
"ncbigi":[
"16421888"
],
"refseq_locus_tag":[
"STM3330"
],
"refseq_name":[
"gltB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0840",
"name":"ybiV(2)",
"notes":{
"original_bigg_ids":[
"STM0840"
]
},
"annotation":{
"ncbigi":[
"16419347"
],
"refseq_locus_tag":[
"STM0840"
],
"refseq_name":[
"ybiV(2)"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0842",
"name":"ybiV(1)",
"notes":{
"original_bigg_ids":[
"STM0842"
]
},
"annotation":{
"ncbigi":[
"16419349"
],
"refseq_locus_tag":[
"STM0842"
],
"refseq_name":[
"ybiV(1)"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3787",
"name":"uhpT",
"notes":{
"original_bigg_ids":[
"STM3787"
]
},
"annotation":{
"ncbigi":[
"16422357"
],
"refseq_locus_tag":[
"STM3787"
],
"refseq_name":[
"uhpT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0113",
"name":"leuA",
"notes":{
"original_bigg_ids":[
"STM0113"
]
},
"annotation":{
"ncbigi":[
"16418612"
],
"refseq_locus_tag":[
"STM0113"
],
"refseq_name":[
"leuA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0403",
"name":"yajB",
"notes":{
"original_bigg_ids":[
"STM0403"
]
},
"annotation":{
"ncbigi":[
"16418907"
],
"refseq_locus_tag":[
"STM0403"
],
"refseq_name":[
"yajB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0464",
"name":"tesB",
"notes":{
"original_bigg_ids":[
"STM0464"
]
},
"annotation":{
"ncbigi":[
"16418972"
],
"refseq_locus_tag":[
"STM0464"
],
"refseq_name":[
"tesB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1818",
"name":"fadD",
"notes":{
"original_bigg_ids":[
"STM1818"
]
},
"annotation":{
"ncbigi":[
"16420350"
],
"refseq_locus_tag":[
"STM1818"
],
"refseq_name":[
"fadD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1777",
"name":"hemA",
"notes":{
"original_bigg_ids":[
"STM1777"
]
},
"annotation":{
"ncbigi":[
"16420307"
],
"refseq_locus_tag":[
"STM1777"
],
"refseq_name":[
"hemA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2415",
"name":"gltX",
"notes":{
"original_bigg_ids":[
"STM2415"
]
},
"annotation":{
"ncbigi":[
"16420958"
],
"refseq_locus_tag":[
"STM2415"
],
"refseq_name":[
"gltX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3746",
"name":"gltS",
"notes":{
"original_bigg_ids":[
"STM3746"
]
},
"annotation":{
"ncbigi":[
"16422315"
],
"refseq_locus_tag":[
"STM3746"
],
"refseq_name":[
"gltS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3909",
"name":"ilvC",
"notes":{
"original_bigg_ids":[
"STM3909"
]
},
"annotation":{
"ncbigi":[
"16422477"
],
"refseq_locus_tag":[
"STM3909"
],
"refseq_name":[
"ilvC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0517",
"name":"gcl",
"notes":{
"original_bigg_ids":[
"STM0517"
]
},
"annotation":{
"ncbigi":[
"16419027"
],
"refseq_locus_tag":[
"STM0517"
],
"refseq_name":[
"gcl"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2389",
"name":"yfcY",
"notes":{
"original_bigg_ids":[
"STM2389"
]
},
"annotation":{
"ncbigi":[
"16420933"
],
"refseq_locus_tag":[
"STM2389"
],
"refseq_name":[
"yfcY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3982",
"name":"fadA",
"notes":{
"original_bigg_ids":[
"STM3982"
]
},
"annotation":{
"ncbigi":[
"16422548"
],
"refseq_locus_tag":[
"STM3982"
],
"refseq_name":[
"fadA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1350",
"name":"ydiD",
"notes":{
"original_bigg_ids":[
"STM1350"
]
},
"annotation":{
"ncbigi":[
"16419869"
],
"refseq_locus_tag":[
"STM1350"
],
"refseq_name":[
"ydiD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0988",
"name":"kdsB",
"notes":{
"original_bigg_ids":[
"STM0988"
]
},
"annotation":{
"ncbigi":[
"16419500"
],
"refseq_locus_tag":[
"STM0988"
],
"refseq_name":[
"kdsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4087",
"name":"glpF",
"notes":{
"original_bigg_ids":[
"STM4087"
]
},
"annotation":{
"ncbigi":[
"16422653"
],
"refseq_locus_tag":[
"STM4087"
],
"refseq_name":[
"glpF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3316",
"name":"yrbI",
"notes":{
"original_bigg_ids":[
"STM3316"
]
},
"annotation":{
"ncbigi":[
"16421873"
],
"refseq_locus_tag":[
"STM3316"
],
"refseq_name":[
"yrbI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3979",
"name":"ubiB",
"notes":{
"original_bigg_ids":[
"STM3979"
]
},
"annotation":{
"ncbigi":[
"16422544"
],
"refseq_locus_tag":[
"STM3979"
],
"refseq_name":[
"ubiB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1772",
"name":"kdsA",
"notes":{
"original_bigg_ids":[
"STM1772"
]
},
"annotation":{
"ncbigi":[
"16420302"
],
"refseq_locus_tag":[
"STM1772"
],
"refseq_name":[
"kdsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2947",
"name":"cysI",
"notes":{
"original_bigg_ids":[
"STM2947"
]
},
"annotation":{
"ncbigi":[
"16421497"
],
"refseq_locus_tag":[
"STM2947"
],
"refseq_name":[
"cysI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3709",
"name":"kbl",
"notes":{
"original_bigg_ids":[
"STM3709"
]
},
"annotation":{
"ncbigi":[
"16422276"
],
"refseq_locus_tag":[
"STM3709"
],
"refseq_name":[
"kbl"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4386",
"name":"sgaH",
"notes":{
"original_bigg_ids":[
"STM4386"
]
},
"annotation":{
"ncbigi":[
"16422947"
],
"refseq_locus_tag":[
"STM4386"
],
"refseq_name":[
"sgaH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2283",
"name":"glpT",
"notes":{
"original_bigg_ids":[
"STM2283"
]
},
"annotation":{
"ncbigi":[
"16420822"
],
"refseq_locus_tag":[
"STM2283"
],
"refseq_name":[
"glpT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2948",
"name":"cysJ",
"notes":{
"original_bigg_ids":[
"STM2948"
]
},
"annotation":{
"ncbigi":[
"16421498"
],
"refseq_locus_tag":[
"STM2948"
],
"refseq_name":[
"cysJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3675",
"name":"sgbH",
"notes":{
"original_bigg_ids":[
"STM3675"
]
},
"annotation":{
"ncbigi":[
"16422240"
],
"refseq_locus_tag":[
"STM3675"
],
"refseq_name":[
"sgbH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3068",
"name":"fba",
"notes":{
"original_bigg_ids":[
"STM3068"
]
},
"annotation":{
"ncbigi":[
"16421620"
],
"refseq_locus_tag":[
"STM3068"
],
"refseq_name":[
"fba"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3529",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3529"
]
},
"annotation":{
"ncbigi":[
"16422088"
],
"refseq_locus_tag":[
"STM3529"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0704",
"name":"kdpC",
"notes":{
"original_bigg_ids":[
"STM0704"
]
},
"annotation":{
"ncbigi":[
"16419212"
],
"refseq_locus_tag":[
"STM0704"
],
"refseq_name":[
"kdpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0525",
"name":"glxK",
"notes":{
"original_bigg_ids":[
"STM0525"
]
},
"annotation":{
"ncbigi":[
"16419035"
],
"refseq_locus_tag":[
"STM0525"
],
"refseq_name":[
"glxK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2141",
"name":"fbaB",
"notes":{
"original_bigg_ids":[
"STM2141"
]
},
"annotation":{
"ncbigi":[
"16420675"
],
"refseq_locus_tag":[
"STM2141"
],
"refseq_name":[
"fbaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0706",
"name":"kdpA",
"notes":{
"original_bigg_ids":[
"STM0706"
]
},
"annotation":{
"ncbigi":[
"16419214"
],
"refseq_locus_tag":[
"STM0706"
],
"refseq_name":[
"kdpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4085",
"name":"glpX",
"notes":{
"original_bigg_ids":[
"STM4085"
]
},
"annotation":{
"ncbigi":[
"16422651"
],
"refseq_locus_tag":[
"STM4085"
],
"refseq_name":[
"glpX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4415",
"name":"fbp",
"notes":{
"original_bigg_ids":[
"STM4415"
]
},
"annotation":{
"ncbigi":[
"16422978"
],
"refseq_locus_tag":[
"STM4415"
],
"refseq_name":[
"fbp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3247",
"name":"garK",
"notes":{
"original_bigg_ids":[
"STM3247"
]
},
"annotation":{
"ncbigi":[
"16421804"
],
"refseq_locus_tag":[
"STM3247"
],
"refseq_name":[
"garK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0705",
"name":"kdpB",
"notes":{
"original_bigg_ids":[
"STM0705"
]
},
"annotation":{
"ncbigi":[
"16419213"
],
"refseq_locus_tag":[
"STM0705"
],
"refseq_name":[
"kdpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2959",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2959"
]
},
"annotation":{
"ncbigi":[
"16421510"
],
"refseq_locus_tag":[
"STM2959"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3986",
"name":"trkH",
"notes":{
"original_bigg_ids":[
"STM3986"
]
},
"annotation":{
"ncbigi":[
"16422552"
],
"refseq_locus_tag":[
"STM3986"
],
"refseq_name":[
"trkH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2492",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2492"
]
},
"annotation":{
"ncbigi":[
"16421034"
],
"refseq_locus_tag":[
"STM2492"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1695",
"name":"sapD",
"notes":{
"original_bigg_ids":[
"STM1695"
]
},
"annotation":{
"ncbigi":[
"16420223"
],
"refseq_locus_tag":[
"STM1695"
],
"refseq_name":[
"sapD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2976",
"name":"fucI",
"notes":{
"original_bigg_ids":[
"STM2976"
]
},
"annotation":{
"ncbigi":[
"16421526"
],
"refseq_locus_tag":[
"STM2976"
],
"refseq_name":[
"fucI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2977",
"name":"fucK",
"notes":{
"original_bigg_ids":[
"STM2977"
]
},
"annotation":{
"ncbigi":[
"16421527"
],
"refseq_locus_tag":[
"STM2977"
],
"refseq_name":[
"fucK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3880",
"name":"kup",
"notes":{
"original_bigg_ids":[
"STM3880"
]
},
"annotation":{
"ncbigi":[
"16422455"
],
"refseq_locus_tag":[
"STM3880"
],
"refseq_name":[
"kup"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2974",
"name":"fucA",
"notes":{
"original_bigg_ids":[
"STM2974"
]
},
"annotation":{
"ncbigi":[
"16421525"
],
"refseq_locus_tag":[
"STM2974"
],
"refseq_name":[
"fucA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3053",
"name":"gcvP",
"notes":{
"original_bigg_ids":[
"STM3053"
]
},
"annotation":{
"ncbigi":[
"16421604"
],
"refseq_locus_tag":[
"STM3053"
],
"refseq_name":[
"gcvP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3054",
"name":"gcvH",
"notes":{
"original_bigg_ids":[
"STM3054"
]
},
"annotation":{
"ncbigi":[
"16421605"
],
"refseq_locus_tag":[
"STM3054"
],
"refseq_name":[
"gcvH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3055",
"name":"gcvT",
"notes":{
"original_bigg_ids":[
"STM3055"
]
},
"annotation":{
"ncbigi":[
"16421606"
],
"refseq_locus_tag":[
"STM3055"
],
"refseq_name":[
"gcvT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3409",
"name":"trkA",
"notes":{
"original_bigg_ids":[
"STM3409"
]
},
"annotation":{
"ncbigi":[
"16421965"
],
"refseq_locus_tag":[
"STM3409"
],
"refseq_name":[
"trkA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2916",
"name":"ygbL",
"notes":{
"original_bigg_ids":[
"STM2916"
]
},
"annotation":{
"ncbigi":[
"16421465"
],
"refseq_locus_tag":[
"STM2916"
],
"refseq_name":[
"ygbL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0489",
"name":"hemH",
"notes":{
"original_bigg_ids":[
"STM0489"
]
},
"annotation":{
"ncbigi":[
"16418997"
],
"refseq_locus_tag":[
"STM0489"
],
"refseq_name":[
"hemH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0866",
"name":"mdfA",
"notes":{
"original_bigg_ids":[
"STM0866"
]
},
"annotation":{
"ncbigi":[
"16419374"
],
"refseq_locus_tag":[
"STM0866"
],
"refseq_name":[
"mdfA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1135",
"name":"ycdW",
"notes":{
"original_bigg_ids":[
"STM1135"
]
},
"annotation":{
"ncbigi":[
"16419650"
],
"refseq_locus_tag":[
"STM1135"
],
"refseq_name":[
"ycdW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0086",
"name":"kefC",
"notes":{
"original_bigg_ids":[
"STM0086"
]
},
"annotation":{
"ncbigi":[
"16418583"
],
"refseq_locus_tag":[
"STM0086"
],
"refseq_name":[
"kefC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1570",
"name":"fdnG",
"notes":{
"original_bigg_ids":[
"STM1570"
]
},
"annotation":{
"ncbigi":[
"16420092"
],
"refseq_locus_tag":[
"STM1570"
],
"refseq_name":[
"fdnG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3457",
"name":"kefB",
"notes":{
"original_bigg_ids":[
"STM3457"
]
},
"annotation":{
"ncbigi":[
"16422014"
],
"refseq_locus_tag":[
"STM3457"
],
"refseq_name":[
"kefB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1620",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1620"
]
},
"annotation":{
"ncbigi":[
"16420145"
],
"refseq_locus_tag":[
"STM1620"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4086",
"name":"glpK",
"notes":{
"original_bigg_ids":[
"STM4086"
]
},
"annotation":{
"ncbigi":[
"16422652"
],
"refseq_locus_tag":[
"STM4086"
],
"refseq_name":[
"glpK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2301",
"name":"pqaB",
"notes":{
"original_bigg_ids":[
"STM2301"
]
},
"annotation":{
"ncbigi":[
"16420841"
],
"refseq_locus_tag":[
"STM2301"
],
"refseq_name":[
"pqaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4036",
"name":"fdoH",
"notes":{
"original_bigg_ids":[
"STM4036"
]
},
"annotation":{
"ncbigi":[
"16422599"
],
"refseq_locus_tag":[
"STM4036"
],
"refseq_name":[
"fdoH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1680",
"name":"ycjI",
"notes":{
"original_bigg_ids":[
"STM1680"
]
},
"annotation":{
"ncbigi":[
"16420207"
],
"refseq_locus_tag":[
"STM1680"
],
"refseq_name":[
"ycjI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4035",
"name":"fdoI",
"notes":{
"original_bigg_ids":[
"STM4035"
]
},
"annotation":{
"ncbigi":[
"16422598"
],
"refseq_locus_tag":[
"STM4035"
],
"refseq_name":[
"fdoI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0261",
"name":"gloB",
"notes":{
"original_bigg_ids":[
"STM0261"
]
},
"annotation":{
"ncbigi":[
"16418761"
],
"refseq_locus_tag":[
"STM0261"
],
"refseq_name":[
"gloB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2973",
"name":"fucO",
"notes":{
"original_bigg_ids":[
"STM2973"
]
},
"annotation":{
"ncbigi":[
"16421524"
],
"refseq_locus_tag":[
"STM2973"
],
"refseq_name":[
"fucO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3655",
"name":"glyS",
"notes":{
"original_bigg_ids":[
"STM3655"
]
},
"annotation":{
"ncbigi":[
"16422219"
],
"refseq_locus_tag":[
"STM3655"
],
"refseq_name":[
"glyS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1568",
"name":"fdnI",
"notes":{
"original_bigg_ids":[
"STM1568"
]
},
"annotation":{
"ncbigi":[
"16420090"
],
"refseq_locus_tag":[
"STM1568"
],
"refseq_name":[
"fdnI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1647",
"name":"ldhA",
"notes":{
"original_bigg_ids":[
"STM1647"
]
},
"annotation":{
"ncbigi":[
"16420174"
],
"refseq_locus_tag":[
"STM1647"
],
"refseq_name":[
"ldhA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4037",
"name":"fdoG",
"notes":{
"original_bigg_ids":[
"STM4037"
]
},
"annotation":{
"ncbigi":[
"16422600"
],
"refseq_locus_tag":[
"STM4037"
],
"refseq_name":[
"fdoG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1569",
"name":"fdnH",
"notes":{
"original_bigg_ids":[
"STM1569"
]
},
"annotation":{
"ncbigi":[
"16420091"
],
"refseq_locus_tag":[
"STM1569"
],
"refseq_name":[
"fdnH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3656",
"name":"glyQ",
"notes":{
"original_bigg_ids":[
"STM3656"
]
},
"annotation":{
"ncbigi":[
"16422220"
],
"refseq_locus_tag":[
"STM3656"
],
"refseq_name":[
"glyQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2109",
"name":"gmd",
"notes":{
"original_bigg_ids":[
"STM2109"
]
},
"annotation":{
"ncbigi":[
"16420642"
],
"refseq_locus_tag":[
"STM2109"
],
"refseq_name":[
"gmd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2167",
"name":"dld",
"notes":{
"original_bigg_ids":[
"STM2167"
]
},
"annotation":{
"ncbigi":[
"16420703"
],
"refseq_locus_tag":[
"STM2167"
],
"refseq_name":[
"dld"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2408",
"name":"mntH",
"notes":{
"original_bigg_ids":[
"STM2408"
]
},
"annotation":{
"ncbigi":[
"16420952"
],
"refseq_locus_tag":[
"STM2408"
],
"refseq_name":[
"mntH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4248",
"name":"tyrB",
"notes":{
"original_bigg_ids":[
"STM4248"
]
},
"annotation":{
"ncbigi":[
"16422806"
],
"refseq_locus_tag":[
"STM4248"
],
"refseq_name":[
"tyrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3200",
"name":"rfaE",
"notes":{
"original_bigg_ids":[
"STM3200"
]
},
"annotation":{
"ncbigi":[
"16421757"
],
"refseq_locus_tag":[
"STM3200"
],
"refseq_name":[
"rfaE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0648",
"name":"leuS",
"notes":{
"original_bigg_ids":[
"STM0648"
]
},
"annotation":{
"ncbigi":[
"16419160"
],
"refseq_locus_tag":[
"STM0648"
],
"refseq_name":[
"leuS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0248",
"name":"yaeD",
"notes":{
"original_bigg_ids":[
"STM0248"
]
},
"annotation":{
"ncbigi":[
"16418753"
],
"refseq_locus_tag":[
"STM0248"
],
"refseq_name":[
"yaeD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0592",
"name":"fepD",
"notes":{
"original_bigg_ids":[
"STM0592"
]
},
"annotation":{
"ncbigi":[
"16419102"
],
"refseq_locus_tag":[
"STM0592"
],
"refseq_name":[
"fepD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0591",
"name":"fepG",
"notes":{
"original_bigg_ids":[
"STM0591"
]
},
"annotation":{
"ncbigi":[
"16419101"
],
"refseq_locus_tag":[
"STM0591"
],
"refseq_name":[
"fepG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3564",
"name":"livK",
"notes":{
"original_bigg_ids":[
"STM3564"
]
},
"annotation":{
"ncbigi":[
"16422124"
],
"refseq_locus_tag":[
"STM3564"
],
"refseq_name":[
"livK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0594",
"name":"fepB",
"notes":{
"original_bigg_ids":[
"STM0594"
]
},
"annotation":{
"ncbigi":[
"16419104"
],
"refseq_locus_tag":[
"STM0594"
],
"refseq_name":[
"fepB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0141",
"name":"guaC",
"notes":{
"original_bigg_ids":[
"STM0141"
]
},
"annotation":{
"ncbigi":[
"16418641"
],
"refseq_locus_tag":[
"STM0141"
],
"refseq_name":[
"guaC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0235",
"name":"yaeR",
"notes":{
"original_bigg_ids":[
"STM0235"
]
},
"annotation":{
"ncbigi":[
"16418740"
],
"refseq_locus_tag":[
"STM0235"
],
"refseq_name":[
"yaeR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2510",
"name":"guaA",
"notes":{
"original_bigg_ids":[
"STM2510"
]
},
"annotation":{
"ncbigi":[
"16421053"
],
"refseq_locus_tag":[
"STM2510"
],
"refseq_name":[
"guaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0590",
"name":"fepC",
"notes":{
"original_bigg_ids":[
"STM0590"
]
},
"annotation":{
"ncbigi":[
"16419100"
],
"refseq_locus_tag":[
"STM0590"
],
"refseq_name":[
"fepC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1435",
"name":"gloA",
"notes":{
"original_bigg_ids":[
"STM1435"
]
},
"annotation":{
"ncbigi":[
"16419955"
],
"refseq_locus_tag":[
"STM1435"
],
"refseq_name":[
"gloA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2199",
"name":"cirA",
"notes":{
"original_bigg_ids":[
"STM2199"
]
},
"annotation":{
"ncbigi":[
"16420737"
],
"refseq_locus_tag":[
"STM2199"
],
"refseq_name":[
"cirA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0229",
"name":"lpxB",
"notes":{
"original_bigg_ids":[
"STM0229"
]
},
"annotation":{
"ncbigi":[
"16418734"
],
"refseq_locus_tag":[
"STM0229"
],
"refseq_name":[
"lpxB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0191",
"name":"fhuA",
"notes":{
"original_bigg_ids":[
"STM0191"
]
},
"annotation":{
"ncbigi":[
"16418694"
],
"refseq_locus_tag":[
"STM0191"
],
"refseq_name":[
"fhuA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2081",
"name":"gnd",
"notes":{
"original_bigg_ids":[
"STM2081"
]
},
"annotation":{
"ncbigi":[
"16420613"
],
"refseq_locus_tag":[
"STM2081"
],
"refseq_name":[
"gnd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0506",
"name":"tesA",
"notes":{
"original_bigg_ids":[
"STM0506"
]
},
"annotation":{
"ncbigi":[
"16419015"
],
"refseq_locus_tag":[
"STM0506"
],
"refseq_name":[
"tesA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3542",
"name":"gntK",
"notes":{
"original_bigg_ids":[
"STM3542"
]
},
"annotation":{
"ncbigi":[
"16422101"
],
"refseq_locus_tag":[
"STM3542"
],
"refseq_name":[
"gntK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0585",
"name":"fepA",
"notes":{
"original_bigg_ids":[
"STM0585"
]
},
"annotation":{
"ncbigi":[
"16419095"
],
"refseq_locus_tag":[
"STM0585"
],
"refseq_name":[
"fepA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0593",
"name":"ybdA",
"notes":{
"original_bigg_ids":[
"STM0593"
]
},
"annotation":{
"ncbigi":[
"16419103"
],
"refseq_locus_tag":[
"STM0593"
],
"refseq_name":[
"ybdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3961",
"name":"pldB",
"notes":{
"original_bigg_ids":[
"STM3961"
]
},
"annotation":{
"ncbigi":[
"16422525"
],
"refseq_locus_tag":[
"STM3961"
],
"refseq_name":[
"pldB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2559",
"name":"cadA",
"notes":{
"original_bigg_ids":[
"STM2559"
]
},
"annotation":{
"ncbigi":[
"16421105"
],
"refseq_locus_tag":[
"STM2559"
],
"refseq_name":[
"cadA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2848",
"name":"hycF",
"notes":{
"original_bigg_ids":[
"STM2848"
]
},
"annotation":{
"ncbigi":[
"16421394"
],
"refseq_locus_tag":[
"STM2848"
],
"refseq_name":[
"hycF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0234",
"name":"ldcC",
"notes":{
"original_bigg_ids":[
"STM0234"
]
},
"annotation":{
"ncbigi":[
"16418739"
],
"refseq_locus_tag":[
"STM0234"
],
"refseq_name":[
"ldcC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4485",
"name":"idnK",
"notes":{
"original_bigg_ids":[
"STM4485"
]
},
"annotation":{
"ncbigi":[
"16423050"
],
"refseq_locus_tag":[
"STM4485"
],
"refseq_name":[
"idnK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3040",
"name":"lysS",
"notes":{
"original_bigg_ids":[
"STM3040"
]
},
"annotation":{
"ncbigi":[
"16421590"
],
"refseq_locus_tag":[
"STM3040"
],
"refseq_name":[
"lysS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3553",
"name":"ugpQ",
"notes":{
"original_bigg_ids":[
"STM3553"
]
},
"annotation":{
"ncbigi":[
"16422113"
],
"refseq_locus_tag":[
"STM3553"
],
"refseq_name":[
"ugpQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2200",
"name":"lysP",
"notes":{
"original_bigg_ids":[
"STM2200"
]
},
"annotation":{
"ncbigi":[
"16420738"
],
"refseq_locus_tag":[
"STM2200"
],
"refseq_name":[
"lysP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2282",
"name":"glpQ",
"notes":{
"original_bigg_ids":[
"STM2282"
]
},
"annotation":{
"ncbigi":[
"16420821"
],
"refseq_locus_tag":[
"STM2282"
],
"refseq_name":[
"glpQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2851",
"name":"hycC",
"notes":{
"original_bigg_ids":[
"STM2851"
]
},
"annotation":{
"ncbigi":[
"16421397"
],
"refseq_locus_tag":[
"STM2851"
],
"refseq_name":[
"hycC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4046",
"name":"rhaA",
"notes":{
"original_bigg_ids":[
"STM4046"
]
},
"annotation":{
"ncbigi":[
"16422611"
],
"refseq_locus_tag":[
"STM4046"
],
"refseq_name":[
"rhaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2852",
"name":"hycB",
"notes":{
"original_bigg_ids":[
"STM2852"
]
},
"annotation":{
"ncbigi":[
"16421398"
],
"refseq_locus_tag":[
"STM2852"
],
"refseq_name":[
"hycB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2849",
"name":"hycE",
"notes":{
"original_bigg_ids":[
"STM2849"
]
},
"annotation":{
"ncbigi":[
"16421395"
],
"refseq_locus_tag":[
"STM2849"
],
"refseq_name":[
"hycE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1165",
"name":"grxB",
"notes":{
"original_bigg_ids":[
"STM1165"
]
},
"annotation":{
"ncbigi":[
"16419681"
],
"refseq_locus_tag":[
"STM1165"
],
"refseq_name":[
"grxB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4050",
"name":"rhaT",
"notes":{
"original_bigg_ids":[
"STM4050"
]
},
"annotation":{
"ncbigi":[
"16422615"
],
"refseq_locus_tag":[
"STM4050"
],
"refseq_name":[
"rhaT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0872",
"name":"grxA",
"notes":{
"original_bigg_ids":[
"STM0872"
]
},
"annotation":{
"ncbigi":[
"16419380"
],
"refseq_locus_tag":[
"STM0872"
],
"refseq_name":[
"grxA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4285",
"name":"fdhF",
"notes":{
"original_bigg_ids":[
"STM4285"
]
},
"annotation":{
"ncbigi":[
"16422846"
],
"refseq_locus_tag":[
"STM4285"
],
"refseq_name":[
"fdhF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2850",
"name":"hycD",
"notes":{
"original_bigg_ids":[
"STM2850"
]
},
"annotation":{
"ncbigi":[
"16421396"
],
"refseq_locus_tag":[
"STM2850"
],
"refseq_name":[
"hycD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3694",
"name":"lldD",
"notes":{
"original_bigg_ids":[
"STM3694"
]
},
"annotation":{
"ncbigi":[
"16422260"
],
"refseq_locus_tag":[
"STM3694"
],
"refseq_name":[
"lldD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2847",
"name":"hycG",
"notes":{
"original_bigg_ids":[
"STM2847"
]
},
"annotation":{
"ncbigi":[
"16421393"
],
"refseq_locus_tag":[
"STM2847"
],
"refseq_name":[
"hycG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3702",
"name":"grxC",
"notes":{
"original_bigg_ids":[
"STM3702"
]
},
"annotation":{
"ncbigi":[
"16422269"
],
"refseq_locus_tag":[
"STM3702"
],
"refseq_name":[
"grxC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3686",
"name":"mtlD",
"notes":{
"original_bigg_ids":[
"STM3686"
]
},
"annotation":{
"ncbigi":[
"16422252"
],
"refseq_locus_tag":[
"STM3686"
],
"refseq_name":[
"mtlD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1433",
"name":"ydhD",
"notes":{
"original_bigg_ids":[
"STM1433"
]
},
"annotation":{
"ncbigi":[
"16419953"
],
"refseq_locus_tag":[
"STM1433"
],
"refseq_name":[
"ydhD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0694",
"name":"fldA",
"notes":{
"original_bigg_ids":[
"STM0694"
]
},
"annotation":{
"ncbigi":[
"16419202"
],
"refseq_locus_tag":[
"STM0694"
],
"refseq_name":[
"fldA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4183",
"name":"aceB",
"notes":{
"original_bigg_ids":[
"STM4183"
]
},
"annotation":{
"ncbigi":[
"16422738"
],
"refseq_locus_tag":[
"STM4183"
],
"refseq_name":[
"aceB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1467",
"name":"manA",
"notes":{
"original_bigg_ids":[
"STM1467"
]
},
"annotation":{
"ncbigi":[
"16419986"
],
"refseq_locus_tag":[
"STM1467"
],
"refseq_name":[
"manA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0491",
"name":"gsk",
"notes":{
"original_bigg_ids":[
"STM0491"
]
},
"annotation":{
"ncbigi":[
"16418999"
],
"refseq_locus_tag":[
"STM0491"
],
"refseq_name":[
"gsk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0370",
"name":"prpD",
"notes":{
"original_bigg_ids":[
"STM0370"
]
},
"annotation":{
"ncbigi":[
"16418872"
],
"refseq_locus_tag":[
"STM0370"
],
"refseq_name":[
"prpD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3045",
"name":"fldB",
"notes":{
"original_bigg_ids":[
"STM3045"
]
},
"annotation":{
"ncbigi":[
"16421596"
],
"refseq_locus_tag":[
"STM3045"
],
"refseq_name":[
"fldB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0368",
"name":"prpB",
"notes":{
"original_bigg_ids":[
"STM0368"
]
},
"annotation":{
"ncbigi":[
"16418870"
],
"refseq_locus_tag":[
"STM0368"
],
"refseq_name":[
"prpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4084",
"name":"fpr",
"notes":{
"original_bigg_ids":[
"STM4084"
]
},
"annotation":{
"ncbigi":[
"16422650"
],
"refseq_locus_tag":[
"STM4084"
],
"refseq_name":[
"fpr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3139",
"name":"gsp",
"notes":{
"original_bigg_ids":[
"STM3139"
]
},
"annotation":{
"ncbigi":[
"16421693"
],
"refseq_locus_tag":[
"STM3139"
],
"refseq_name":[
"gsp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0369",
"name":"prpC",
"notes":{
"original_bigg_ids":[
"STM0369"
]
},
"annotation":{
"ncbigi":[
"16418871"
],
"refseq_locus_tag":[
"STM0369"
],
"refseq_name":[
"prpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3407",
"name":"fmt",
"notes":{
"original_bigg_ids":[
"STM3407"
]
},
"annotation":{
"ncbigi":[
"16421963"
],
"refseq_locus_tag":[
"STM3407"
],
"refseq_name":[
"fmt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3597",
"name":"gor",
"notes":{
"original_bigg_ids":[
"STM3597"
]
},
"annotation":{
"ncbigi":[
"16422159"
],
"refseq_locus_tag":[
"STM3597"
],
"refseq_name":[
"gor"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1194",
"name":"fabD",
"notes":{
"original_bigg_ids":[
"STM1194"
]
},
"annotation":{
"ncbigi":[
"16419711"
],
"refseq_locus_tag":[
"STM1194"
],
"refseq_name":[
"fabD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3551",
"name":"ggt",
"notes":{
"original_bigg_ids":[
"STM3551"
]
},
"annotation":{
"ncbigi":[
"16422110"
],
"refseq_locus_tag":[
"STM3551"
],
"refseq_name":[
"ggt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0045",
"name":"ribF",
"notes":{
"original_bigg_ids":[
"STM0045"
]
},
"annotation":{
"ncbigi":[
"16418540"
],
"refseq_locus_tag":[
"STM0045"
],
"refseq_name":[
"ribF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2533",
"name":"sseA",
"notes":{
"original_bigg_ids":[
"STM2533"
]
},
"annotation":{
"ncbigi":[
"16421078"
],
"refseq_locus_tag":[
"STM2533"
],
"refseq_name":[
"sseA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0190",
"name":"mrcB",
"notes":{
"original_bigg_ids":[
"STM0190"
]
},
"annotation":{
"ncbigi":[
"16418693"
],
"refseq_locus_tag":[
"STM0190"
],
"refseq_name":[
"mrcB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0640",
"name":"mrdA",
"notes":{
"original_bigg_ids":[
"STM0640"
]
},
"annotation":{
"ncbigi":[
"16419152"
],
"refseq_locus_tag":[
"STM0640"
],
"refseq_name":[
"mrdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0974",
"name":"focA",
"notes":{
"original_bigg_ids":[
"STM0974"
]
},
"annotation":{
"ncbigi":[
"16419485"
],
"refseq_locus_tag":[
"STM0974"
],
"refseq_name":[
"focA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0850",
"name":"yliC",
"notes":{
"original_bigg_ids":[
"STM0850"
]
},
"annotation":{
"ncbigi":[
"16419357"
],
"refseq_locus_tag":[
"STM0850"
],
"refseq_name":[
"yliC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0849",
"name":"yliB",
"notes":{
"original_bigg_ids":[
"STM0849"
]
},
"annotation":{
"ncbigi":[
"16419356"
],
"refseq_locus_tag":[
"STM0849"
],
"refseq_name":[
"yliB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0122",
"name":"ftsI",
"notes":{
"original_bigg_ids":[
"STM0122"
]
},
"annotation":{
"ncbigi":[
"16418621"
],
"refseq_locus_tag":[
"STM0122"
],
"refseq_name":[
"ftsI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0848",
"name":"yliA",
"notes":{
"original_bigg_ids":[
"STM0848"
]
},
"annotation":{
"ncbigi":[
"16419355"
],
"refseq_locus_tag":[
"STM0848"
],
"refseq_name":[
"yliA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0851",
"name":"yliD",
"notes":{
"original_bigg_ids":[
"STM0851"
]
},
"annotation":{
"ncbigi":[
"16419358"
],
"refseq_locus_tag":[
"STM0851"
],
"refseq_name":[
"yliD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3493",
"name":"mrcA",
"notes":{
"original_bigg_ids":[
"STM3493"
]
},
"annotation":{
"ncbigi":[
"16422051"
],
"refseq_locus_tag":[
"STM3493"
],
"refseq_name":[
"mrcA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0637",
"name":"dacA",
"notes":{
"original_bigg_ids":[
"STM0637"
]
},
"annotation":{
"ncbigi":[
"16419149"
],
"refseq_locus_tag":[
"STM0637"
],
"refseq_name":[
"dacA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3095",
"name":"gshB",
"notes":{
"original_bigg_ids":[
"STM3095"
]
},
"annotation":{
"ncbigi":[
"16421648"
],
"refseq_locus_tag":[
"STM3095"
],
"refseq_name":[
"gshB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0152",
"name":"aceE",
"notes":{
"original_bigg_ids":[
"STM0152"
]
},
"annotation":{
"ncbigi":[
"16418653"
],
"refseq_locus_tag":[
"STM0152"
],
"refseq_name":[
"aceE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2062",
"name":"dacD",
"notes":{
"original_bigg_ids":[
"STM2062"
]
},
"annotation":{
"ncbigi":[
"16420593"
],
"refseq_locus_tag":[
"STM2062"
],
"refseq_name":[
"dacD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1448",
"name":"pdxH",
"notes":{
"original_bigg_ids":[
"STM1448"
]
},
"annotation":{
"ncbigi":[
"16419968"
],
"refseq_locus_tag":[
"STM1448"
],
"refseq_name":[
"pdxH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2193",
"name":"folE",
"notes":{
"original_bigg_ids":[
"STM2193"
]
},
"annotation":{
"ncbigi":[
"16420730"
],
"refseq_locus_tag":[
"STM2193"
],
"refseq_name":[
"folE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3300",
"name":"dacB",
"notes":{
"original_bigg_ids":[
"STM3300"
]
},
"annotation":{
"ncbigi":[
"16421858"
],
"refseq_locus_tag":[
"STM3300"
],
"refseq_name":[
"dacB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1711",
"name":"ribA",
"notes":{
"original_bigg_ids":[
"STM1711"
]
},
"annotation":{
"ncbigi":[
"16420241"
],
"refseq_locus_tag":[
"STM1711"
],
"refseq_name":[
"ribA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0863",
"name":"dacC",
"notes":{
"original_bigg_ids":[
"STM0863"
]
},
"annotation":{
"ncbigi":[
"16419371"
],
"refseq_locus_tag":[
"STM0863"
],
"refseq_name":[
"dacC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3913",
"name":"gppA",
"notes":{
"original_bigg_ids":[
"STM3913"
]
},
"annotation":{
"ncbigi":[
"16422481"
],
"refseq_locus_tag":[
"STM3913"
],
"refseq_name":[
"gppA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2578",
"name":"pdxJ",
"notes":{
"original_bigg_ids":[
"STM2578"
]
},
"annotation":{
"ncbigi":[
"16421125"
],
"refseq_locus_tag":[
"STM2578"
],
"refseq_name":[
"pdxJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2168",
"name":"pbpG",
"notes":{
"original_bigg_ids":[
"STM2168"
]
},
"annotation":{
"ncbigi":[
"16420704"
],
"refseq_locus_tag":[
"STM2168"
],
"refseq_name":[
"pbpG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0091",
"name":"pdxA",
"notes":{
"original_bigg_ids":[
"STM0091"
]
},
"annotation":{
"ncbigi":[
"16418588"
],
"refseq_locus_tag":[
"STM0091"
],
"refseq_name":[
"pdxA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0170",
"name":"hpt",
"notes":{
"original_bigg_ids":[
"STM0170"
]
},
"annotation":{
"ncbigi":[
"16418672"
],
"refseq_locus_tag":[
"STM0170"
],
"refseq_name":[
"hpt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0317",
"name":"gpt",
"notes":{
"original_bigg_ids":[
"STM0317"
]
},
"annotation":{
"ncbigi":[
"16418818"
],
"refseq_locus_tag":[
"STM0317"
],
"refseq_name":[
"gpt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0163",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0163"
]
},
"annotation":{
"ncbigi":[
"16418664"
],
"refseq_locus_tag":[
"STM0163"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2383",
"name":"mepA",
"notes":{
"original_bigg_ids":[
"STM2383"
]
},
"annotation":{
"ncbigi":[
"16420927"
],
"refseq_locus_tag":[
"STM2383"
],
"refseq_name":[
"mepA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3359",
"name":"mdh",
"notes":{
"original_bigg_ids":[
"STM3359"
]
},
"annotation":{
"ncbigi":[
"16421918"
],
"refseq_locus_tag":[
"STM3359"
],
"refseq_name":[
"mdh"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2370",
"name":"pdxB",
"notes":{
"original_bigg_ids":[
"STM2370"
]
},
"annotation":{
"ncbigi":[
"16420913"
],
"refseq_locus_tag":[
"STM2370"
],
"refseq_name":[
"pdxB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4016",
"name":"yshA",
"notes":{
"original_bigg_ids":[
"STM4016"
]
},
"annotation":{
"ncbigi":[
"16422578"
],
"refseq_locus_tag":[
"STM4016"
],
"refseq_name":[
"yshA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4234",
"name":"ubiA",
"notes":{
"original_bigg_ids":[
"STM4234"
]
},
"annotation":{
"ncbigi":[
"16422792"
],
"refseq_locus_tag":[
"STM4234"
],
"refseq_name":[
"ubiA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1566",
"name":"sfcA",
"notes":{
"original_bigg_ids":[
"STM1566"
]
},
"annotation":{
"ncbigi":[
"16420088"
],
"refseq_locus_tag":[
"STM1566"
],
"refseq_name":[
"sfcA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0171",
"name":"yadF",
"notes":{
"original_bigg_ids":[
"STM0171"
]
},
"annotation":{
"ncbigi":[
"16418673"
],
"refseq_locus_tag":[
"STM0171"
],
"refseq_name":[
"yadF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0439",
"name":"cyoE",
"notes":{
"original_bigg_ids":[
"STM0439"
]
},
"annotation":{
"ncbigi":[
"16418946"
],
"refseq_locus_tag":[
"STM0439"
],
"refseq_name":[
"cyoE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3635",
"name":"yhjW",
"notes":{
"original_bigg_ids":[
"STM3635"
]
},
"annotation":{
"ncbigi":[
"16422199"
],
"refseq_locus_tag":[
"STM3635"
],
"refseq_name":[
"yhjW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2472",
"name":"maeB",
"notes":{
"original_bigg_ids":[
"STM2472"
]
},
"annotation":{
"ncbigi":[
"16421013"
],
"refseq_locus_tag":[
"STM2472"
],
"refseq_name":[
"maeB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3721",
"name":"rfaP",
"notes":{
"original_bigg_ids":[
"STM3721"
]
},
"annotation":{
"ncbigi":[
"16422289"
],
"refseq_locus_tag":[
"STM3721"
],
"refseq_name":[
"rfaP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2523",
"name":"gcpE",
"notes":{
"original_bigg_ids":[
"STM2523"
]
},
"annotation":{
"ncbigi":[
"16421067"
],
"refseq_locus_tag":[
"STM2523"
],
"refseq_name":[
"gcpE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3716",
"name":"rfaY",
"notes":{
"original_bigg_ids":[
"STM3716"
]
},
"annotation":{
"ncbigi":[
"16422284"
],
"refseq_locus_tag":[
"STM3716"
],
"refseq_name":[
"rfaY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1326",
"name":"pfkB",
"notes":{
"original_bigg_ids":[
"STM1326"
]
},
"annotation":{
"ncbigi":[
"16419844"
],
"refseq_locus_tag":[
"STM1326"
],
"refseq_name":[
"pfkB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2929",
"name":"ispF",
"notes":{
"original_bigg_ids":[
"STM2929"
]
},
"annotation":{
"ncbigi":[
"16421478"
],
"refseq_locus_tag":[
"STM2929"
],
"refseq_name":[
"ispF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4062",
"name":"pfkA",
"notes":{
"original_bigg_ids":[
"STM4062"
]
},
"annotation":{
"ncbigi":[
"16422627"
],
"refseq_locus_tag":[
"STM4062"
],
"refseq_name":[
"pfkA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3712",
"name":"rfaC",
"notes":{
"original_bigg_ids":[
"STM3712"
]
},
"annotation":{
"ncbigi":[
"16422279"
],
"refseq_locus_tag":[
"STM3712"
],
"refseq_name":[
"rfaC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4299",
"name":"melB",
"notes":{
"original_bigg_ids":[
"STM4299"
]
},
"annotation":{
"ncbigi":[
"16422861"
],
"refseq_locus_tag":[
"STM4299"
],
"refseq_name":[
"melB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3711",
"name":"rfaF",
"notes":{
"original_bigg_ids":[
"STM3711"
]
},
"annotation":{
"ncbigi":[
"16422278"
],
"refseq_locus_tag":[
"STM3711"
],
"refseq_name":[
"rfaF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2930",
"name":"ispD",
"notes":{
"original_bigg_ids":[
"STM2930"
]
},
"annotation":{
"ncbigi":[
"16421479"
],
"refseq_locus_tag":[
"STM2930"
],
"refseq_name":[
"ispD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3723",
"name":"rfaQ",
"notes":{
"original_bigg_ids":[
"STM3723"
]
},
"annotation":{
"ncbigi":[
"16422291"
],
"refseq_locus_tag":[
"STM3723"
],
"refseq_name":[
"rfaQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3257",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3257"
]
},
"annotation":{
"ncbigi":[
"16421815"
],
"refseq_locus_tag":[
"STM3257"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0844",
"name":"pflE",
"notes":{
"original_bigg_ids":[
"STM0844"
]
},
"annotation":{
"ncbigi":[
"16419351"
],
"refseq_locus_tag":[
"STM0844"
],
"refseq_name":[
"pflE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3090",
"name":"metK",
"notes":{
"original_bigg_ids":[
"STM3090"
]
},
"annotation":{
"ncbigi":[
"16421643"
],
"refseq_locus_tag":[
"STM3090"
],
"refseq_name":[
"metK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4115",
"name":"pflC",
"notes":{
"original_bigg_ids":[
"STM4115"
]
},
"annotation":{
"ncbigi":[
"16422682"
],
"refseq_locus_tag":[
"STM4115"
],
"refseq_name":[
"pflC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3714",
"name":"rfaK",
"notes":{
"original_bigg_ids":[
"STM3714"
]
},
"annotation":{
"ncbigi":[
"16422281"
],
"refseq_locus_tag":[
"STM3714"
],
"refseq_name":[
"rfaK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0246",
"name":"yaeE",
"notes":{
"original_bigg_ids":[
"STM0246"
]
},
"annotation":{
"ncbigi":[
"16418751"
],
"refseq_locus_tag":[
"STM0246"
],
"refseq_name":[
"yaeE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4114",
"name":"pflD",
"notes":{
"original_bigg_ids":[
"STM4114"
]
},
"annotation":{
"ncbigi":[
"16422681"
],
"refseq_locus_tag":[
"STM4114"
],
"refseq_name":[
"pflD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0245",
"name":"yaeC",
"notes":{
"original_bigg_ids":[
"STM0245"
]
},
"annotation":{
"ncbigi":[
"16418750"
],
"refseq_locus_tag":[
"STM0245"
],
"refseq_name":[
"yaeC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0843",
"name":"pflF",
"notes":{
"original_bigg_ids":[
"STM0843"
]
},
"annotation":{
"ncbigi":[
"16419350"
],
"refseq_locus_tag":[
"STM0843"
],
"refseq_name":[
"pflF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2147",
"name":"thiM",
"notes":{
"original_bigg_ids":[
"STM2147"
]
},
"annotation":{
"ncbigi":[
"16420681"
],
"refseq_locus_tag":[
"STM2147"
],
"refseq_name":[
"thiM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0247",
"name":"abc",
"notes":{
"original_bigg_ids":[
"STM0247"
]
},
"annotation":{
"ncbigi":[
"16418752"
],
"refseq_locus_tag":[
"STM0247"
],
"refseq_name":[
"abc"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2403",
"name":"glk",
"notes":{
"original_bigg_ids":[
"STM2403"
]
},
"annotation":{
"ncbigi":[
"16420947"
],
"refseq_locus_tag":[
"STM2403"
],
"refseq_name":[
"glk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3965",
"name":"metE",
"notes":{
"original_bigg_ids":[
"STM3965"
]
},
"annotation":{
"ncbigi":[
"16422530"
],
"refseq_locus_tag":[
"STM3965"
],
"refseq_name":[
"metE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3294",
"name":"mrsA",
"notes":{
"original_bigg_ids":[
"STM3294"
]
},
"annotation":{
"ncbigi":[
"16421852"
],
"refseq_locus_tag":[
"STM3294"
],
"refseq_name":[
"mrsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0393",
"name":"yajF",
"notes":{
"original_bigg_ids":[
"STM0393"
]
},
"annotation":{
"ncbigi":[
"16418896"
],
"refseq_locus_tag":[
"STM0393"
],
"refseq_name":[
"yajF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4408",
"name":"msrA",
"notes":{
"original_bigg_ids":[
"STM4408"
]
},
"annotation":{
"ncbigi":[
"16422970"
],
"refseq_locus_tag":[
"STM4408"
],
"refseq_name":[
"msrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3062",
"name":"serA",
"notes":{
"original_bigg_ids":[
"STM3062"
]
},
"annotation":{
"ncbigi":[
"16421614"
],
"refseq_locus_tag":[
"STM3062"
],
"refseq_name":[
"serA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1291",
"name":"yeaA",
"notes":{
"original_bigg_ids":[
"STM1291"
]
},
"annotation":{
"ncbigi":[
"16419808"
],
"refseq_locus_tag":[
"STM1291"
],
"refseq_name":[
"yeaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4221",
"name":"pgi",
"notes":{
"original_bigg_ids":[
"STM4221"
]
},
"annotation":{
"ncbigi":[
"16422778"
],
"refseq_locus_tag":[
"STM4221"
],
"refseq_name":[
"pgi"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2072",
"name":"hisD",
"notes":{
"original_bigg_ids":[
"STM2072"
]
},
"annotation":{
"ncbigi":[
"16420603"
],
"refseq_locus_tag":[
"STM2072"
],
"refseq_name":[
"hisD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2155",
"name":"metG",
"notes":{
"original_bigg_ids":[
"STM2155"
]
},
"annotation":{
"ncbigi":[
"16420690"
],
"refseq_locus_tag":[
"STM2155"
],
"refseq_name":[
"metG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3069",
"name":"pgk",
"notes":{
"original_bigg_ids":[
"STM3069"
]
},
"annotation":{
"ncbigi":[
"16421621"
],
"refseq_locus_tag":[
"STM3069"
],
"refseq_name":[
"pgk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0785",
"name":"ybhE",
"notes":{
"original_bigg_ids":[
"STM0785"
]
},
"annotation":{
"ncbigi":[
"16419291"
],
"refseq_locus_tag":[
"STM0785"
],
"refseq_name":[
"ybhE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2074",
"name":"hisB",
"notes":{
"original_bigg_ids":[
"STM2074"
]
},
"annotation":{
"ncbigi":[
"16420605"
],
"refseq_locus_tag":[
"STM2074"
],
"refseq_name":[
"hisB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2522",
"name":"hisS",
"notes":{
"original_bigg_ids":[
"STM2522"
]
},
"annotation":{
"ncbigi":[
"16421066"
],
"refseq_locus_tag":[
"STM2522"
],
"refseq_name":[
"hisS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2354",
"name":"hisJ",
"notes":{
"original_bigg_ids":[
"STM2354"
]
},
"annotation":{
"ncbigi":[
"16420897"
],
"refseq_locus_tag":[
"STM2354"
],
"refseq_name":[
"hisJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1076",
"name":"mgsA",
"notes":{
"original_bigg_ids":[
"STM1076"
]
},
"annotation":{
"ncbigi":[
"16419591"
],
"refseq_locus_tag":[
"STM1076"
],
"refseq_name":[
"mgsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0150",
"name":"aroP",
"notes":{
"original_bigg_ids":[
"STM0150"
]
},
"annotation":{
"ncbigi":[
"16418651"
],
"refseq_locus_tag":[
"STM0150"
],
"refseq_name":[
"aroP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3938",
"name":"hemC",
"notes":{
"original_bigg_ids":[
"STM3938"
]
},
"annotation":{
"ncbigi":[
"16422502"
],
"refseq_locus_tag":[
"STM3938"
],
"refseq_name":[
"hemC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2435",
"name":"pdxK",
"notes":{
"original_bigg_ids":[
"STM2435"
]
},
"annotation":{
"ncbigi":[
"16420974"
],
"refseq_locus_tag":[
"STM2435"
],
"refseq_name":[
"pdxK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3482",
"name":"gph",
"notes":{
"original_bigg_ids":[
"STM3482"
]
},
"annotation":{
"ncbigi":[
"16422040"
],
"refseq_locus_tag":[
"STM3482"
],
"refseq_name":[
"gph"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0772",
"name":"gpmA",
"notes":{
"original_bigg_ids":[
"STM0772"
]
},
"annotation":{
"ncbigi":[
"16419277"
],
"refseq_locus_tag":[
"STM0772"
],
"refseq_name":[
"gpmA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2546",
"name":"suhB",
"notes":{
"original_bigg_ids":[
"STM2546"
]
},
"annotation":{
"ncbigi":[
"16421091"
],
"refseq_locus_tag":[
"STM2546"
],
"refseq_name":[
"suhB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4585",
"name":"gpmB",
"notes":{
"original_bigg_ids":[
"STM4585"
]
},
"annotation":{
"ncbigi":[
"16423151"
],
"refseq_locus_tag":[
"STM4585"
],
"refseq_name":[
"gpmB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2146",
"name":"thiD",
"notes":{
"original_bigg_ids":[
"STM2146"
]
},
"annotation":{
"ncbigi":[
"16420680"
],
"refseq_locus_tag":[
"STM2146"
],
"refseq_name":[
"thiD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3960",
"name":"rthB",
"notes":{
"original_bigg_ids":[
"STM3960"
]
},
"annotation":{
"ncbigi":[
"16422524"
],
"refseq_locus_tag":[
"STM3960"
],
"refseq_name":[
"rthB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0401",
"name":"malZ",
"notes":{
"original_bigg_ids":[
"STM0401"
]
},
"annotation":{
"ncbigi":[
"16418905"
],
"refseq_locus_tag":[
"STM0401"
],
"refseq_name":[
"malZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0832",
"name":"ybiF",
"notes":{
"original_bigg_ids":[
"STM0832"
]
},
"annotation":{
"ncbigi":[
"16419338"
],
"refseq_locus_tag":[
"STM0832"
],
"refseq_name":[
"ybiF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3704",
"name":"pmgI",
"notes":{
"original_bigg_ids":[
"STM3704"
]
},
"annotation":{
"ncbigi":[
"16422271"
],
"refseq_locus_tag":[
"STM3704"
],
"refseq_name":[
"pmgI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1799",
"name":"emtA",
"notes":{
"original_bigg_ids":[
"STM1799"
]
},
"annotation":{
"ncbigi":[
"16420330"
],
"refseq_locus_tag":[
"STM1799"
],
"refseq_name":[
"emtA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2988",
"name":"mltA",
"notes":{
"original_bigg_ids":[
"STM2988"
]
},
"annotation":{
"ncbigi":[
"16421539"
],
"refseq_locus_tag":[
"STM2988"
],
"refseq_name":[
"mltA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3112",
"name":"mltC",
"notes":{
"original_bigg_ids":[
"STM3112"
]
},
"annotation":{
"ncbigi":[
"16421666"
],
"refseq_locus_tag":[
"STM3112"
],
"refseq_name":[
"mltC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0698",
"name":"pgm",
"notes":{
"original_bigg_ids":[
"STM0698"
]
},
"annotation":{
"ncbigi":[
"16419206"
],
"refseq_locus_tag":[
"STM0698"
],
"refseq_name":[
"pgm"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0183",
"name":"folK",
"notes":{
"original_bigg_ids":[
"STM0183"
]
},
"annotation":{
"ncbigi":[
"16418685"
],
"refseq_locus_tag":[
"STM0183"
],
"refseq_name":[
"folK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2831",
"name":"mltB",
"notes":{
"original_bigg_ids":[
"STM2831"
]
},
"annotation":{
"ncbigi":[
"16421376"
],
"refseq_locus_tag":[
"STM2831"
],
"refseq_name":[
"mltB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0518",
"name":"gip",
"notes":{
"original_bigg_ids":[
"STM0518"
]
},
"annotation":{
"ncbigi":[
"16419028"
],
"refseq_locus_tag":[
"STM0518"
],
"refseq_name":[
"gip"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0003",
"name":"thrB",
"notes":{
"original_bigg_ids":[
"STM0003"
]
},
"annotation":{
"ncbigi":[
"16418496"
],
"refseq_locus_tag":[
"STM0003"
],
"refseq_name":[
"thrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2820",
"name":"yqaB",
"notes":{
"original_bigg_ids":[
"STM2820"
]
},
"annotation":{
"ncbigi":[
"16421369"
],
"refseq_locus_tag":[
"STM2820"
],
"refseq_name":[
"yqaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4582",
"name":"slt",
"notes":{
"original_bigg_ids":[
"STM4582"
]
},
"annotation":{
"ncbigi":[
"16423148"
],
"refseq_locus_tag":[
"STM4582"
],
"refseq_name":[
"slt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0420",
"name":"pgpA",
"notes":{
"original_bigg_ids":[
"STM0420"
]
},
"annotation":{
"ncbigi":[
"16418925"
],
"refseq_locus_tag":[
"STM0420"
],
"refseq_name":[
"pgpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4182",
"name":"metA",
"notes":{
"original_bigg_ids":[
"STM4182"
]
},
"annotation":{
"ncbigi":[
"16422737"
],
"refseq_locus_tag":[
"STM4182"
],
"refseq_name":[
"metA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3685",
"name":"mtlA",
"notes":{
"original_bigg_ids":[
"STM3685"
]
},
"annotation":{
"ncbigi":[
"16422251"
],
"refseq_locus_tag":[
"STM3685"
],
"refseq_name":[
"mtlA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2073",
"name":"hisC",
"notes":{
"original_bigg_ids":[
"STM2073"
]
},
"annotation":{
"ncbigi":[
"16420604"
],
"refseq_locus_tag":[
"STM2073"
],
"refseq_name":[
"hisC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3724",
"name":"kdtA",
"notes":{
"original_bigg_ids":[
"STM3724"
]
},
"annotation":{
"ncbigi":[
"16422292"
],
"refseq_locus_tag":[
"STM3724"
],
"refseq_name":[
"kdtA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1238",
"name":"icdA",
"notes":{
"original_bigg_ids":[
"STM1238"
]
},
"annotation":{
"ncbigi":[
"16419757"
],
"refseq_locus_tag":[
"STM1238"
],
"refseq_name":[
"icdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3715",
"name":"rfaZ",
"notes":{
"original_bigg_ids":[
"STM3715"
]
},
"annotation":{
"ncbigi":[
"16422282"
],
"refseq_locus_tag":[
"STM3715"
],
"refseq_name":[
"rfaZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1945",
"name":"pgsA",
"notes":{
"original_bigg_ids":[
"STM1945"
]
},
"annotation":{
"ncbigi":[
"16420479"
],
"refseq_locus_tag":[
"STM1945"
],
"refseq_name":[
"pgsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4063",
"name":"sbp",
"notes":{
"original_bigg_ids":[
"STM4063"
]
},
"annotation":{
"ncbigi":[
"16422628"
],
"refseq_locus_tag":[
"STM4063"
],
"refseq_name":[
"sbp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2310",
"name":"menF",
"notes":{
"original_bigg_ids":[
"STM2310"
]
},
"annotation":{
"ncbigi":[
"16420850"
],
"refseq_locus_tag":[
"STM2310"
],
"refseq_name":[
"menF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2443",
"name":"cysU",
"notes":{
"original_bigg_ids":[
"STM2443"
]
},
"annotation":{
"ncbigi":[
"16420983"
],
"refseq_locus_tag":[
"STM2443"
],
"refseq_name":[
"cysU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2252",
"name":"ccmC",
"notes":{
"original_bigg_ids":[
"STM2252"
]
},
"annotation":{
"ncbigi":[
"16420790"
],
"refseq_locus_tag":[
"STM2252"
],
"refseq_name":[
"ccmC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0782",
"name":"modB",
"notes":{
"original_bigg_ids":[
"STM0782"
]
},
"annotation":{
"ncbigi":[
"16419288"
],
"refseq_locus_tag":[
"STM0782"
],
"refseq_name":[
"modB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2253",
"name":"ccmB",
"notes":{
"original_bigg_ids":[
"STM2253"
]
},
"annotation":{
"ncbigi":[
"16420791"
],
"refseq_locus_tag":[
"STM2253"
],
"refseq_name":[
"ccmB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0595",
"name":"entC",
"notes":{
"original_bigg_ids":[
"STM0595"
]
},
"annotation":{
"ncbigi":[
"16419105"
],
"refseq_locus_tag":[
"STM0595"
],
"refseq_name":[
"entC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2442",
"name":"cysW",
"notes":{
"original_bigg_ids":[
"STM2442"
]
},
"annotation":{
"ncbigi":[
"16420982"
],
"refseq_locus_tag":[
"STM2442"
],
"refseq_name":[
"cysW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0597",
"name":"entB",
"notes":{
"original_bigg_ids":[
"STM0597"
]
},
"annotation":{
"ncbigi":[
"16419107"
],
"refseq_locus_tag":[
"STM0597"
],
"refseq_name":[
"entB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2254",
"name":"ccmA",
"notes":{
"original_bigg_ids":[
"STM2254"
]
},
"annotation":{
"ncbigi":[
"16420792"
],
"refseq_locus_tag":[
"STM2254"
],
"refseq_name":[
"ccmA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0783",
"name":"modC",
"notes":{
"original_bigg_ids":[
"STM0783"
]
},
"annotation":{
"ncbigi":[
"16419289"
],
"refseq_locus_tag":[
"STM0783"
],
"refseq_name":[
"modC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1337",
"name":"pheS",
"notes":{
"original_bigg_ids":[
"STM1337"
]
},
"annotation":{
"ncbigi":[
"16419856"
],
"refseq_locus_tag":[
"STM1337"
],
"refseq_name":[
"pheS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4184",
"name":"aceA",
"notes":{
"original_bigg_ids":[
"STM4184"
]
},
"annotation":{
"ncbigi":[
"16422739"
],
"refseq_locus_tag":[
"STM4184"
],
"refseq_name":[
"aceA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2444",
"name":"cysP",
"notes":{
"original_bigg_ids":[
"STM2444"
]
},
"annotation":{
"ncbigi":[
"16420984"
],
"refseq_locus_tag":[
"STM2444"
],
"refseq_name":[
"cysP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4484",
"name":"idnD",
"notes":{
"original_bigg_ids":[
"STM4484"
]
},
"annotation":{
"ncbigi":[
"16423049"
],
"refseq_locus_tag":[
"STM4484"
],
"refseq_name":[
"idnD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1338",
"name":"pheT",
"notes":{
"original_bigg_ids":[
"STM1338"
]
},
"annotation":{
"ncbigi":[
"16419857"
],
"refseq_locus_tag":[
"STM1338"
],
"refseq_name":[
"pheT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0781",
"name":"modA",
"notes":{
"original_bigg_ids":[
"STM0781"
]
},
"annotation":{
"ncbigi":[
"16419287"
],
"refseq_locus_tag":[
"STM0781"
],
"refseq_name":[
"modA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2077",
"name":"hisF",
"notes":{
"original_bigg_ids":[
"STM2077"
]
},
"annotation":{
"ncbigi":[
"16420608"
],
"refseq_locus_tag":[
"STM2077"
],
"refseq_name":[
"hisF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2441",
"name":"cysA",
"notes":{
"original_bigg_ids":[
"STM2441"
]
},
"annotation":{
"ncbigi":[
"16420981"
],
"refseq_locus_tag":[
"STM2441"
],
"refseq_name":[
"cysA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2075",
"name":"hisH",
"notes":{
"original_bigg_ids":[
"STM2075"
]
},
"annotation":{
"ncbigi":[
"16420606"
],
"refseq_locus_tag":[
"STM2075"
],
"refseq_name":[
"hisH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0182",
"name":"panB",
"notes":{
"original_bigg_ids":[
"STM0182"
]
},
"annotation":{
"ncbigi":[
"16418684"
],
"refseq_locus_tag":[
"STM0182"
],
"refseq_name":[
"panB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1725",
"name":"trpC",
"notes":{
"original_bigg_ids":[
"STM1725"
]
},
"annotation":{
"ncbigi":[
"16420255"
],
"refseq_locus_tag":[
"STM1725"
],
"refseq_name":[
"trpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0568",
"name":"pheP",
"notes":{
"original_bigg_ids":[
"STM0568"
]
},
"annotation":{
"ncbigi":[
"16419077"
],
"refseq_locus_tag":[
"STM0568"
],
"refseq_name":[
"pheP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2531",
"name":"pbpC",
"notes":{
"original_bigg_ids":[
"STM2531"
]
},
"annotation":{
"ncbigi":[
"16421076"
],
"refseq_locus_tag":[
"STM2531"
],
"refseq_name":[
"pbpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3903",
"name":"ilvE",
"notes":{
"original_bigg_ids":[
"STM3903"
]
},
"annotation":{
"ncbigi":[
"16422471"
],
"refseq_locus_tag":[
"STM3903"
],
"refseq_name":[
"ilvE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0542",
"name":"folD",
"notes":{
"original_bigg_ids":[
"STM0542"
]
},
"annotation":{
"ncbigi":[
"16419053"
],
"refseq_locus_tag":[
"STM0542"
],
"refseq_name":[
"folD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0046",
"name":"ileS",
"notes":{
"original_bigg_ids":[
"STM0046"
]
},
"annotation":{
"ncbigi":[
"16418541"
],
"refseq_locus_tag":[
"STM0046"
],
"refseq_name":[
"ileS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3589",
"name":"pitA",
"notes":{
"original_bigg_ids":[
"STM3589"
]
},
"annotation":{
"ncbigi":[
"16422150"
],
"refseq_locus_tag":[
"STM3589"
],
"refseq_name":[
"pitA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4105",
"name":"metF",
"notes":{
"original_bigg_ids":[
"STM4105"
]
},
"annotation":{
"ncbigi":[
"16422672"
],
"refseq_locus_tag":[
"STM4105"
],
"refseq_name":[
"metF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1160",
"name":"solA",
"notes":{
"original_bigg_ids":[
"STM1160"
]
},
"annotation":{
"ncbigi":[
"16419676"
],
"refseq_locus_tag":[
"STM1160"
],
"refseq_name":[
"solA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3855",
"name":"pstA",
"notes":{
"original_bigg_ids":[
"STM3855"
]
},
"annotation":{
"ncbigi":[
"16422428"
],
"refseq_locus_tag":[
"STM3855"
],
"refseq_name":[
"pstA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4166",
"name":"yjaD",
"notes":{
"original_bigg_ids":[
"STM4166"
]
},
"annotation":{
"ncbigi":[
"16422724"
],
"refseq_locus_tag":[
"STM4166"
],
"refseq_name":[
"yjaD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3856",
"name":"pstC",
"notes":{
"original_bigg_ids":[
"STM3856"
]
},
"annotation":{
"ncbigi":[
"16422429"
],
"refseq_locus_tag":[
"STM3856"
],
"refseq_name":[
"pstC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0399",
"name":"brnQ",
"notes":{
"original_bigg_ids":[
"STM0399"
]
},
"annotation":{
"ncbigi":[
"16418903"
],
"refseq_locus_tag":[
"STM0399"
],
"refseq_name":[
"brnQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2427",
"name":"lig",
"notes":{
"original_bigg_ids":[
"STM2427"
]
},
"annotation":{
"ncbigi":[
"16420966"
],
"refseq_locus_tag":[
"STM2427"
],
"refseq_name":[
"lig"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2511",
"name":"guaB",
"notes":{
"original_bigg_ids":[
"STM2511"
]
},
"annotation":{
"ncbigi":[
"16421054"
],
"refseq_locus_tag":[
"STM2511"
],
"refseq_name":[
"guaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3854",
"name":"pstB",
"notes":{
"original_bigg_ids":[
"STM3854"
]
},
"annotation":{
"ncbigi":[
"16422427"
],
"refseq_locus_tag":[
"STM3854"
],
"refseq_name":[
"pstB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3857",
"name":"pstS",
"notes":{
"original_bigg_ids":[
"STM3857"
]
},
"annotation":{
"ncbigi":[
"16422431"
],
"refseq_locus_tag":[
"STM3857"
],
"refseq_name":[
"pstS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3957",
"name":"pldA",
"notes":{
"original_bigg_ids":[
"STM3957"
]
},
"annotation":{
"ncbigi":[
"16422521"
],
"refseq_locus_tag":[
"STM3957"
],
"refseq_name":[
"pldA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1211",
"name":"ndh",
"notes":{
"original_bigg_ids":[
"STM1211"
]
},
"annotation":{
"ncbigi":[
"16419728"
],
"refseq_locus_tag":[
"STM1211"
],
"refseq_name":[
"ndh"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3390",
"name":"acrE",
"notes":{
"original_bigg_ids":[
"STM3390"
]
},
"annotation":{
"ncbigi":[
"16421951"
],
"refseq_locus_tag":[
"STM3390"
],
"refseq_name":[
"acrE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2317",
"name":"nuoM",
"notes":{
"original_bigg_ids":[
"STM2317"
]
},
"annotation":{
"ncbigi":[
"16420858"
],
"refseq_locus_tag":[
"STM2317"
],
"refseq_name":[
"nuoM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3391",
"name":"acrF",
"notes":{
"original_bigg_ids":[
"STM3391"
]
},
"annotation":{
"ncbigi":[
"16421952"
],
"refseq_locus_tag":[
"STM3391"
],
"refseq_name":[
"acrF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4139",
"name":"coaA",
"notes":{
"original_bigg_ids":[
"STM4139"
]
},
"annotation":{
"ncbigi":[
"16422701"
],
"refseq_locus_tag":[
"STM4139"
],
"refseq_name":[
"coaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3382",
"name":"panF",
"notes":{
"original_bigg_ids":[
"STM3382"
]
},
"annotation":{
"ncbigi":[
"16421943"
],
"refseq_locus_tag":[
"STM3382"
],
"refseq_name":[
"panF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2327",
"name":"nuoB",
"notes":{
"original_bigg_ids":[
"STM2327"
]
},
"annotation":{
"ncbigi":[
"16420868"
],
"refseq_locus_tag":[
"STM2327"
],
"refseq_name":[
"nuoB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0935",
"name":"poxB",
"notes":{
"original_bigg_ids":[
"STM0935"
]
},
"annotation":{
"ncbigi":[
"16419446"
],
"refseq_locus_tag":[
"STM0935"
],
"refseq_name":[
"poxB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3279",
"name":"mtr",
"notes":{
"original_bigg_ids":[
"STM3279"
]
},
"annotation":{
"ncbigi":[
"16421838"
],
"refseq_locus_tag":[
"STM3279"
],
"refseq_name":[
"mtr"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2321",
"name":"nuoI",
"notes":{
"original_bigg_ids":[
"STM2321"
]
},
"annotation":{
"ncbigi":[
"16420862"
],
"refseq_locus_tag":[
"STM2321"
],
"refseq_name":[
"nuoI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3039",
"name":"idi",
"notes":{
"original_bigg_ids":[
"STM3039"
]
},
"annotation":{
"ncbigi":[
"16421589"
],
"refseq_locus_tag":[
"STM3039"
],
"refseq_name":[
"idi"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2328",
"name":"nuoA",
"notes":{
"original_bigg_ids":[
"STM2328"
]
},
"annotation":{
"ncbigi":[
"16420869"
],
"refseq_locus_tag":[
"STM2328"
],
"refseq_name":[
"nuoA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4414",
"name":"ppa",
"notes":{
"original_bigg_ids":[
"STM4414"
]
},
"annotation":{
"ncbigi":[
"16422977"
],
"refseq_locus_tag":[
"STM4414"
],
"refseq_name":[
"ppa"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2325",
"name":"nuoE",
"notes":{
"original_bigg_ids":[
"STM2325"
]
},
"annotation":{
"ncbigi":[
"16420866"
],
"refseq_locus_tag":[
"STM2325"
],
"refseq_name":[
"nuoE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2502",
"name":"ppx",
"notes":{
"original_bigg_ids":[
"STM2502"
]
},
"annotation":{
"ncbigi":[
"16421044"
],
"refseq_locus_tag":[
"STM2502"
],
"refseq_name":[
"ppx"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0112",
"name":"leuB",
"notes":{
"original_bigg_ids":[
"STM0112"
]
},
"annotation":{
"ncbigi":[
"16418611"
],
"refseq_locus_tag":[
"STM0112"
],
"refseq_name":[
"leuB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2322",
"name":"nuoH",
"notes":{
"original_bigg_ids":[
"STM2322"
]
},
"annotation":{
"ncbigi":[
"16420863"
],
"refseq_locus_tag":[
"STM2322"
],
"refseq_name":[
"nuoH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0329",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0329"
]
},
"annotation":{
"ncbigi":[
"16418829"
],
"refseq_locus_tag":[
"STM0329"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2057",
"name":"pduW",
"notes":{
"original_bigg_ids":[
"STM2057"
]
},
"annotation":{
"ncbigi":[
"16420587"
],
"refseq_locus_tag":[
"STM2057"
],
"refseq_name":[
"pduW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2319",
"name":"nuoK",
"notes":{
"original_bigg_ids":[
"STM2319"
]
},
"annotation":{
"ncbigi":[
"16420860"
],
"refseq_locus_tag":[
"STM2319"
],
"refseq_name":[
"nuoK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2320",
"name":"nuoJ",
"notes":{
"original_bigg_ids":[
"STM2320"
]
},
"annotation":{
"ncbigi":[
"16420861"
],
"refseq_locus_tag":[
"STM2320"
],
"refseq_name":[
"nuoJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1125",
"name":"putP",
"notes":{
"original_bigg_ids":[
"STM1125"
]
},
"annotation":{
"ncbigi":[
"16419640"
],
"refseq_locus_tag":[
"STM1125"
],
"refseq_name":[
"putP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0110",
"name":"leuD",
"notes":{
"original_bigg_ids":[
"STM0110"
]
},
"annotation":{
"ncbigi":[
"16418609"
],
"refseq_locus_tag":[
"STM0110"
],
"refseq_name":[
"leuD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0111",
"name":"leuC",
"notes":{
"original_bigg_ids":[
"STM0111"
]
},
"annotation":{
"ncbigi":[
"16418610"
],
"refseq_locus_tag":[
"STM0111"
],
"refseq_name":[
"leuC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2326",
"name":"nuoC",
"notes":{
"original_bigg_ids":[
"STM2326"
]
},
"annotation":{
"ncbigi":[
"16420867"
],
"refseq_locus_tag":[
"STM2326"
],
"refseq_name":[
"nuoC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2324",
"name":"nuoF",
"notes":{
"original_bigg_ids":[
"STM2324"
]
},
"annotation":{
"ncbigi":[
"16420865"
],
"refseq_locus_tag":[
"STM2324"
],
"refseq_name":[
"nuoF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2318",
"name":"nuoL",
"notes":{
"original_bigg_ids":[
"STM2318"
]
},
"annotation":{
"ncbigi":[
"16420859"
],
"refseq_locus_tag":[
"STM2318"
],
"refseq_name":[
"nuoL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0372",
"name":"hemB",
"notes":{
"original_bigg_ids":[
"STM0372"
]
},
"annotation":{
"ncbigi":[
"16418874"
],
"refseq_locus_tag":[
"STM0372"
],
"refseq_name":[
"hemB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2683",
"name":"yfjB",
"notes":{
"original_bigg_ids":[
"STM2683"
]
},
"annotation":{
"ncbigi":[
"16421229"
],
"refseq_locus_tag":[
"STM2683"
],
"refseq_name":[
"yfjB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4119",
"name":"ppc",
"notes":{
"original_bigg_ids":[
"STM4119"
]
},
"annotation":{
"ncbigi":[
"16422686"
],
"refseq_locus_tag":[
"STM4119"
],
"refseq_name":[
"ppc"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3730",
"name":"dfp",
"notes":{
"original_bigg_ids":[
"STM3730"
]
},
"annotation":{
"ncbigi":[
"16422298"
],
"refseq_locus_tag":[
"STM3730"
],
"refseq_name":[
"dfp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3500",
"name":"pckA",
"notes":{
"original_bigg_ids":[
"STM3500"
]
},
"annotation":{
"ncbigi":[
"16422059"
],
"refseq_locus_tag":[
"STM3500"
],
"refseq_name":[
"pckA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2501",
"name":"ppk",
"notes":{
"original_bigg_ids":[
"STM2501"
]
},
"annotation":{
"ncbigi":[
"16421043"
],
"refseq_locus_tag":[
"STM2501"
],
"refseq_name":[
"ppk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3179",
"name":"mdaB",
"notes":{
"original_bigg_ids":[
"STM3179"
]
},
"annotation":{
"ncbigi":[
"16421735"
],
"refseq_locus_tag":[
"STM3179"
],
"refseq_name":[
"mdaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4569",
"name":"deoB",
"notes":{
"original_bigg_ids":[
"STM4569"
]
},
"annotation":{
"ncbigi":[
"16423135"
],
"refseq_locus_tag":[
"STM4569"
],
"refseq_name":[
"deoB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2669",
"name":"tyrA",
"notes":{
"original_bigg_ids":[
"STM2669"
]
},
"annotation":{
"ncbigi":[
"16421215"
],
"refseq_locus_tag":[
"STM2669"
],
"refseq_name":[
"tyrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1310",
"name":"nadE",
"notes":{
"original_bigg_ids":[
"STM1310"
]
},
"annotation":{
"ncbigi":[
"16419828"
],
"refseq_locus_tag":[
"STM1310"
],
"refseq_name":[
"nadE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2667",
"name":"pheA",
"notes":{
"original_bigg_ids":[
"STM2667"
]
},
"annotation":{
"ncbigi":[
"16421213"
],
"refseq_locus_tag":[
"STM2667"
],
"refseq_name":[
"pheA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3076",
"name":"tktA",
"notes":{
"original_bigg_ids":[
"STM3076"
]
},
"annotation":{
"ncbigi":[
"16421628"
],
"refseq_locus_tag":[
"STM3076"
],
"refseq_name":[
"tktA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1480",
"name":"pntB",
"notes":{
"original_bigg_ids":[
"STM1480"
]
},
"annotation":{
"ncbigi":[
"16419999"
],
"refseq_locus_tag":[
"STM1480"
],
"refseq_name":[
"pntB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3823",
"name":"torC",
"notes":{
"original_bigg_ids":[
"STM3823"
]
},
"annotation":{
"ncbigi":[
"16422396"
],
"refseq_locus_tag":[
"STM3823"
],
"refseq_name":[
"torC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3987",
"name":"hemG",
"notes":{
"original_bigg_ids":[
"STM3987"
]
},
"annotation":{
"ncbigi":[
"16422553"
],
"refseq_locus_tag":[
"STM3987"
],
"refseq_name":[
"hemG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4126",
"name":"udhA",
"notes":{
"original_bigg_ids":[
"STM4126"
]
},
"annotation":{
"ncbigi":[
"16422693"
],
"refseq_locus_tag":[
"STM4126"
],
"refseq_name":[
"udhA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2554",
"name":"hcaT",
"notes":{
"original_bigg_ids":[
"STM2554"
]
},
"annotation":{
"ncbigi":[
"16421100"
],
"refseq_locus_tag":[
"STM2554"
],
"refseq_name":[
"hcaT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1479",
"name":"pntA",
"notes":{
"original_bigg_ids":[
"STM1479"
]
},
"annotation":{
"ncbigi":[
"16419998"
],
"refseq_locus_tag":[
"STM1479"
],
"refseq_name":[
"pntA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1349",
"name":"pps",
"notes":{
"original_bigg_ids":[
"STM1349"
]
},
"annotation":{
"ncbigi":[
"16419868"
],
"refseq_locus_tag":[
"STM1349"
],
"refseq_name":[
"pps"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3822",
"name":"torA",
"notes":{
"original_bigg_ids":[
"STM3822"
]
},
"annotation":{
"ncbigi":[
"16422395"
],
"refseq_locus_tag":[
"STM3822"
],
"refseq_name":[
"torA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1004",
"name":"pncB",
"notes":{
"original_bigg_ids":[
"STM1004"
]
},
"annotation":{
"ncbigi":[
"16419517"
],
"refseq_locus_tag":[
"STM1004"
],
"refseq_name":[
"pncB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1806",
"name":"nhaB",
"notes":{
"original_bigg_ids":[
"STM1806"
]
},
"annotation":{
"ncbigi":[
"16420337"
],
"refseq_locus_tag":[
"STM1806"
],
"refseq_name":[
"nhaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4175",
"name":"purD",
"notes":{
"original_bigg_ids":[
"STM4175"
]
},
"annotation":{
"ncbigi":[
"16422734"
],
"refseq_locus_tag":[
"STM4175"
],
"refseq_name":[
"purD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0039",
"name":"nhaA",
"notes":{
"original_bigg_ids":[
"STM0039"
]
},
"annotation":{
"ncbigi":[
"16418534"
],
"refseq_locus_tag":[
"STM0039"
],
"refseq_name":[
"nhaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2078",
"name":"hisI",
"notes":{
"original_bigg_ids":[
"STM2078"
]
},
"annotation":{
"ncbigi":[
"16420609"
],
"refseq_locus_tag":[
"STM2078"
],
"refseq_name":[
"hisI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2487",
"name":"purC",
"notes":{
"original_bigg_ids":[
"STM2487"
]
},
"annotation":{
"ncbigi":[
"16421029"
],
"refseq_locus_tag":[
"STM2487"
],
"refseq_name":[
"purC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3001",
"name":"thyA",
"notes":{
"original_bigg_ids":[
"STM3001"
]
},
"annotation":{
"ncbigi":[
"16421551"
],
"refseq_locus_tag":[
"STM3001"
],
"refseq_name":[
"thyA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1208",
"name":"ycfN",
"notes":{
"original_bigg_ids":[
"STM1208"
]
},
"annotation":{
"ncbigi":[
"16419725"
],
"refseq_locus_tag":[
"STM1208"
],
"refseq_name":[
"ycfN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2526",
"name":"ndk",
"notes":{
"original_bigg_ids":[
"STM2526"
]
},
"annotation":{
"ncbigi":[
"16421070"
],
"refseq_locus_tag":[
"STM2526"
],
"refseq_name":[
"ndk"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0463",
"name":"amtB",
"notes":{
"original_bigg_ids":[
"STM0463"
]
},
"annotation":{
"ncbigi":[
"16418971"
],
"refseq_locus_tag":[
"STM0463"
],
"refseq_name":[
"amtB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0419",
"name":"thiL",
"notes":{
"original_bigg_ids":[
"STM0419"
]
},
"annotation":{
"ncbigi":[
"16418924"
],
"refseq_locus_tag":[
"STM0419"
],
"refseq_name":[
"thiL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2565",
"name":"purG",
"notes":{
"original_bigg_ids":[
"STM2565"
]
},
"annotation":{
"ncbigi":[
"16421112"
],
"refseq_locus_tag":[
"STM2565"
],
"refseq_name":[
"purG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2840",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2840"
]
},
"annotation":{
"ncbigi":[
"16421385"
],
"refseq_locus_tag":[
"STM2840"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2076",
"name":"hisA",
"notes":{
"original_bigg_ids":[
"STM2076"
]
},
"annotation":{
"ncbigi":[
"16420607"
],
"refseq_locus_tag":[
"STM2076"
],
"refseq_name":[
"hisA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4163",
"name":"thiE",
"notes":{
"original_bigg_ids":[
"STM4163"
]
},
"annotation":{
"ncbigi":[
"16422721"
],
"refseq_locus_tag":[
"STM4163"
],
"refseq_name":[
"thiE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4081",
"name":"tpiA",
"notes":{
"original_bigg_ids":[
"STM4081"
]
},
"annotation":{
"ncbigi":[
"16422647"
],
"refseq_locus_tag":[
"STM4081"
],
"refseq_name":[
"tpiA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2841",
"name":"ygbD",
"notes":{
"original_bigg_ids":[
"STM2841"
]
},
"annotation":{
"ncbigi":[
"16421386"
],
"refseq_locus_tag":[
"STM2841"
],
"refseq_name":[
"ygbD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0619",
"name":"citG",
"notes":{
"original_bigg_ids":[
"STM0619"
]
},
"annotation":{
"ncbigi":[
"16419130"
],
"refseq_locus_tag":[
"STM0619"
],
"refseq_name":[
"citG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0242",
"name":"proS",
"notes":{
"original_bigg_ids":[
"STM0242"
]
},
"annotation":{
"ncbigi":[
"16418747"
],
"refseq_locus_tag":[
"STM0242"
],
"refseq_name":[
"proS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0645",
"name":"nadD",
"notes":{
"original_bigg_ids":[
"STM0645"
]
},
"annotation":{
"ncbigi":[
"16419157"
],
"refseq_locus_tag":[
"STM0645"
],
"refseq_name":[
"nadD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1780",
"name":"prsA",
"notes":{
"original_bigg_ids":[
"STM1780"
]
},
"annotation":{
"ncbigi":[
"16420310"
],
"refseq_locus_tag":[
"STM1780"
],
"refseq_name":[
"prsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0757",
"name":"pnuC",
"notes":{
"original_bigg_ids":[
"STM0757"
]
},
"annotation":{
"ncbigi":[
"16419263"
],
"refseq_locus_tag":[
"STM0757"
],
"refseq_name":[
"pnuC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0978",
"name":"aroA",
"notes":{
"original_bigg_ids":[
"STM0978"
]
},
"annotation":{
"ncbigi":[
"16419490"
],
"refseq_locus_tag":[
"STM0978"
],
"refseq_name":[
"aroA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0958",
"name":"trxB",
"notes":{
"original_bigg_ids":[
"STM0958"
]
},
"annotation":{
"ncbigi":[
"16419470"
],
"refseq_locus_tag":[
"STM0958"
],
"refseq_name":[
"trxB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1293",
"name":"pncA",
"notes":{
"original_bigg_ids":[
"STM1293"
]
},
"annotation":{
"ncbigi":[
"16419810"
],
"refseq_locus_tag":[
"STM1293"
],
"refseq_name":[
"pncA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0145",
"name":"nadC",
"notes":{
"original_bigg_ids":[
"STM0145"
]
},
"annotation":{
"ncbigi":[
"16418645"
],
"refseq_locus_tag":[
"STM0145"
],
"refseq_name":[
"nadC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4453",
"name":"treC",
"notes":{
"original_bigg_ids":[
"STM4453"
]
},
"annotation":{
"ncbigi":[
"16423018"
],
"refseq_locus_tag":[
"STM4453"
],
"refseq_name":[
"treC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4348",
"name":"psd",
"notes":{
"original_bigg_ids":[
"STM4348"
]
},
"annotation":{
"ncbigi":[
"16422911"
],
"refseq_locus_tag":[
"STM4348"
],
"refseq_name":[
"psd"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1765",
"name":"narK",
"notes":{
"original_bigg_ids":[
"STM1765"
]
},
"annotation":{
"ncbigi":[
"16420294"
],
"refseq_locus_tag":[
"STM1765"
],
"refseq_name":[
"narK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1929",
"name":"otsB",
"notes":{
"original_bigg_ids":[
"STM1929"
]
},
"annotation":{
"ncbigi":[
"16420467"
],
"refseq_locus_tag":[
"STM1929"
],
"refseq_name":[
"otsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4578",
"name":"serB",
"notes":{
"original_bigg_ids":[
"STM4578"
]
},
"annotation":{
"ncbigi":[
"16423144"
],
"refseq_locus_tag":[
"STM4578"
],
"refseq_name":[
"serB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3476",
"name":"nirC",
"notes":{
"original_bigg_ids":[
"STM3476"
]
},
"annotation":{
"ncbigi":[
"16422033"
],
"refseq_locus_tag":[
"STM3476"
],
"refseq_name":[
"nirC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1928",
"name":"otsA",
"notes":{
"original_bigg_ids":[
"STM1928"
]
},
"annotation":{
"ncbigi":[
"16420466"
],
"refseq_locus_tag":[
"STM1928"
],
"refseq_name":[
"otsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2259",
"name":"napA",
"notes":{
"original_bigg_ids":[
"STM2259"
]
},
"annotation":{
"ncbigi":[
"16420798"
],
"refseq_locus_tag":[
"STM2259"
],
"refseq_name":[
"napA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2652",
"name":"pssA",
"notes":{
"original_bigg_ids":[
"STM2652"
]
},
"annotation":{
"ncbigi":[
"16421202"
],
"refseq_locus_tag":[
"STM2652"
],
"refseq_name":[
"pssA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2338",
"name":"pta",
"notes":{
"original_bigg_ids":[
"STM2338"
]
},
"annotation":{
"ncbigi":[
"16420880"
],
"refseq_locus_tag":[
"STM2338"
],
"refseq_name":[
"pta"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3603",
"name":"treF",
"notes":{
"original_bigg_ids":[
"STM3603"
]
},
"annotation":{
"ncbigi":[
"16422165"
],
"refseq_locus_tag":[
"STM3603"
],
"refseq_name":[
"treF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2256",
"name":"napB",
"notes":{
"original_bigg_ids":[
"STM2256"
]
},
"annotation":{
"ncbigi":[
"16420794"
],
"refseq_locus_tag":[
"STM2256"
],
"refseq_name":[
"napB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1796",
"name":"treA",
"notes":{
"original_bigg_ids":[
"STM1796"
]
},
"annotation":{
"ncbigi":[
"16420327"
],
"refseq_locus_tag":[
"STM1796"
],
"refseq_name":[
"treA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4454",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4454"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM2047",
"name":"pduL",
"notes":{
"original_bigg_ids":[
"STM2047"
]
},
"annotation":{
"ncbigi":[
"16420577"
],
"refseq_locus_tag":[
"STM2047"
],
"refseq_name":[
"pduL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2255",
"name":"napC",
"notes":{
"original_bigg_ids":[
"STM2255"
]
},
"annotation":{
"ncbigi":[
"16420793"
],
"refseq_locus_tag":[
"STM2255"
],
"refseq_name":[
"napC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2466",
"name":"eutD",
"notes":{
"original_bigg_ids":[
"STM2466"
]
},
"annotation":{
"ncbigi":[
"16421007"
],
"refseq_locus_tag":[
"STM2466"
],
"refseq_name":[
"eutD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2257",
"name":"napH",
"notes":{
"original_bigg_ids":[
"STM2257"
]
},
"annotation":{
"ncbigi":[
"16420796"
],
"refseq_locus_tag":[
"STM2257"
],
"refseq_name":[
"napH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3725",
"name":"kdtB",
"notes":{
"original_bigg_ids":[
"STM3725"
]
},
"annotation":{
"ncbigi":[
"16422293"
],
"refseq_locus_tag":[
"STM3725"
],
"refseq_name":[
"kdtB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1727",
"name":"trpA",
"notes":{
"original_bigg_ids":[
"STM1727"
]
},
"annotation":{
"ncbigi":[
"16420257"
],
"refseq_locus_tag":[
"STM1727"
],
"refseq_name":[
"trpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2258",
"name":"napG",
"notes":{
"original_bigg_ids":[
"STM2258"
]
},
"annotation":{
"ncbigi":[
"16420797"
],
"refseq_locus_tag":[
"STM2258"
],
"refseq_name":[
"napG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1726",
"name":"trpB",
"notes":{
"original_bigg_ids":[
"STM1726"
]
},
"annotation":{
"ncbigi":[
"16420256"
],
"refseq_locus_tag":[
"STM1726"
],
"refseq_name":[
"trpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0700",
"name":"potE",
"notes":{
"original_bigg_ids":[
"STM0700"
]
},
"annotation":{
"ncbigi":[
"16419208"
],
"refseq_locus_tag":[
"STM0700"
],
"refseq_name":[
"potE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1761",
"name":"narI",
"notes":{
"original_bigg_ids":[
"STM1761"
]
},
"annotation":{
"ncbigi":[
"16420290"
],
"refseq_locus_tag":[
"STM1761"
],
"refseq_name":[
"narI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3481",
"name":"trpS",
"notes":{
"original_bigg_ids":[
"STM3481"
]
},
"annotation":{
"ncbigi":[
"16422039"
],
"refseq_locus_tag":[
"STM3481"
],
"refseq_name":[
"trpS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1577",
"name":"narZ",
"notes":{
"original_bigg_ids":[
"STM1577"
]
},
"annotation":{
"ncbigi":[
"16420100"
],
"refseq_locus_tag":[
"STM1577"
],
"refseq_name":[
"narZ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3248",
"name":"garR",
"notes":{
"original_bigg_ids":[
"STM3248"
]
},
"annotation":{
"ncbigi":[
"16421805"
],
"refseq_locus_tag":[
"STM3248"
],
"refseq_name":[
"garR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0519",
"name":"glxR",
"notes":{
"original_bigg_ids":[
"STM0519"
]
},
"annotation":{
"ncbigi":[
"16419029"
],
"refseq_locus_tag":[
"STM0519"
],
"refseq_name":[
"glxR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3218",
"name":"oat",
"notes":{
"original_bigg_ids":[
"STM3218"
]
},
"annotation":{
"ncbigi":[
"16421775"
],
"refseq_locus_tag":[
"STM3218"
],
"refseq_name":[
"oat"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1579",
"name":"narW",
"notes":{
"original_bigg_ids":[
"STM1579"
]
},
"annotation":{
"ncbigi":[
"16420102"
],
"refseq_locus_tag":[
"STM1579"
],
"refseq_name":[
"narW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1449",
"name":"tyrS",
"notes":{
"original_bigg_ids":[
"STM1449"
]
},
"annotation":{
"ncbigi":[
"16419970"
],
"refseq_locus_tag":[
"STM1449"
],
"refseq_name":[
"tyrS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1578",
"name":"narY",
"notes":{
"original_bigg_ids":[
"STM1578"
]
},
"annotation":{
"ncbigi":[
"16420101"
],
"refseq_locus_tag":[
"STM1578"
],
"refseq_name":[
"narY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0877",
"name":"potF",
"notes":{
"original_bigg_ids":[
"STM0877"
]
},
"annotation":{
"ncbigi":[
"16419385"
],
"refseq_locus_tag":[
"STM0877"
],
"refseq_name":[
"potF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1763",
"name":"narH",
"notes":{
"original_bigg_ids":[
"STM1763"
]
},
"annotation":{
"ncbigi":[
"16420292"
],
"refseq_locus_tag":[
"STM1763"
],
"refseq_name":[
"narH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1937",
"name":"tyrP",
"notes":{
"original_bigg_ids":[
"STM1937"
]
},
"annotation":{
"ncbigi":[
"16420474"
],
"refseq_locus_tag":[
"STM1937"
],
"refseq_name":[
"tyrP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1762",
"name":"narJ",
"notes":{
"original_bigg_ids":[
"STM1762"
]
},
"annotation":{
"ncbigi":[
"16420291"
],
"refseq_locus_tag":[
"STM1762"
],
"refseq_name":[
"narJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0226",
"name":"lpxD",
"notes":{
"original_bigg_ids":[
"STM0226"
]
},
"annotation":{
"ncbigi":[
"16418731"
],
"refseq_locus_tag":[
"STM0226"
],
"refseq_name":[
"lpxD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1226",
"name":"potA",
"notes":{
"original_bigg_ids":[
"STM1226"
]
},
"annotation":{
"ncbigi":[
"16419744"
],
"refseq_locus_tag":[
"STM1226"
],
"refseq_name":[
"potA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1764",
"name":"narG",
"notes":{
"original_bigg_ids":[
"STM1764"
]
},
"annotation":{
"ncbigi":[
"16420293"
],
"refseq_locus_tag":[
"STM1764"
],
"refseq_name":[
"narG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1225",
"name":"potB",
"notes":{
"original_bigg_ids":[
"STM1225"
]
},
"annotation":{
"ncbigi":[
"16419743"
],
"refseq_locus_tag":[
"STM1225"
],
"refseq_name":[
"potB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0123",
"name":"murE",
"notes":{
"original_bigg_ids":[
"STM0123"
]
},
"annotation":{
"ncbigi":[
"16418622"
],
"refseq_locus_tag":[
"STM0123"
],
"refseq_name":[
"murE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1580",
"name":"narV",
"notes":{
"original_bigg_ids":[
"STM1580"
]
},
"annotation":{
"ncbigi":[
"16420103"
],
"refseq_locus_tag":[
"STM1580"
],
"refseq_name":[
"narV"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3921",
"name":"wecC",
"notes":{
"original_bigg_ids":[
"STM3921"
]
},
"annotation":{
"ncbigi":[
"16422489"
],
"refseq_locus_tag":[
"STM3921"
],
"refseq_name":[
"wecC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0879",
"name":"potH",
"notes":{
"original_bigg_ids":[
"STM0879"
]
},
"annotation":{
"ncbigi":[
"16419388"
],
"refseq_locus_tag":[
"STM0879"
],
"refseq_name":[
"potH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2260",
"name":"napD",
"notes":{
"original_bigg_ids":[
"STM2260"
]
},
"annotation":{
"ncbigi":[
"16420799"
],
"refseq_locus_tag":[
"STM2260"
],
"refseq_name":[
"napD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0880",
"name":"potI",
"notes":{
"original_bigg_ids":[
"STM0880"
]
},
"annotation":{
"ncbigi":[
"16419389"
],
"refseq_locus_tag":[
"STM0880"
],
"refseq_name":[
"potI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3920",
"name":"wecB",
"notes":{
"original_bigg_ids":[
"STM3920"
]
},
"annotation":{
"ncbigi":[
"16422488"
],
"refseq_locus_tag":[
"STM3920"
],
"refseq_name":[
"wecB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0228",
"name":"lpxA",
"notes":{
"original_bigg_ids":[
"STM0228"
]
},
"annotation":{
"ncbigi":[
"16418733"
],
"refseq_locus_tag":[
"STM0228"
],
"refseq_name":[
"lpxA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1222",
"name":"potD",
"notes":{
"original_bigg_ids":[
"STM1222"
]
},
"annotation":{
"ncbigi":[
"16419740"
],
"refseq_locus_tag":[
"STM1222"
],
"refseq_name":[
"potD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1576",
"name":"narU",
"notes":{
"original_bigg_ids":[
"STM1576"
]
},
"annotation":{
"ncbigi":[
"16420099"
],
"refseq_locus_tag":[
"STM1576"
],
"refseq_name":[
"narU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1223",
"name":"potC",
"notes":{
"original_bigg_ids":[
"STM1223"
]
},
"annotation":{
"ncbigi":[
"16419741"
],
"refseq_locus_tag":[
"STM1223"
],
"refseq_name":[
"potC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2556",
"name":"hmpA",
"notes":{
"original_bigg_ids":[
"STM2556"
]
},
"annotation":{
"ncbigi":[
"16421102"
],
"refseq_locus_tag":[
"STM2556"
],
"refseq_name":[
"hmpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0878",
"name":"potG",
"notes":{
"original_bigg_ids":[
"STM0878"
]
},
"annotation":{
"ncbigi":[
"16419387"
],
"refseq_locus_tag":[
"STM0878"
],
"refseq_name":[
"potG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2307",
"name":"menB",
"notes":{
"original_bigg_ids":[
"STM2307"
]
},
"annotation":{
"ncbigi":[
"16420847"
],
"refseq_locus_tag":[
"STM2307"
],
"refseq_name":[
"menB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2422",
"name":"xapA",
"notes":{
"original_bigg_ids":[
"STM2422"
]
},
"annotation":{
"ncbigi":[
"16420961"
],
"refseq_locus_tag":[
"STM2422"
],
"refseq_name":[
"xapA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3307",
"name":"murA",
"notes":{
"original_bigg_ids":[
"STM3307"
]
},
"annotation":{
"ncbigi":[
"16421864"
],
"refseq_locus_tag":[
"STM3307"
],
"refseq_name":[
"murA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2332",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2332"
]
},
"annotation":{
"ncbigi":[
"16420873"
],
"refseq_locus_tag":[
"STM2332"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0128",
"name":"murG",
"notes":{
"original_bigg_ids":[
"STM0128"
]
},
"annotation":{
"ncbigi":[
"16418627"
],
"refseq_locus_tag":[
"STM0128"
],
"refseq_name":[
"murG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0126",
"name":"murD",
"notes":{
"original_bigg_ids":[
"STM0126"
]
},
"annotation":{
"ncbigi":[
"16418625"
],
"refseq_locus_tag":[
"STM0126"
],
"refseq_name":[
"murD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1450",
"name":"pdxY",
"notes":{
"original_bigg_ids":[
"STM1450"
]
},
"annotation":{
"ncbigi":[
"16419971"
],
"refseq_locus_tag":[
"STM1450"
],
"refseq_name":[
"pdxY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0494",
"name":"ushA",
"notes":{
"original_bigg_ids":[
"STM0494"
]
},
"annotation":{
"ncbigi":[
"16419002"
],
"refseq_locus_tag":[
"STM0494"
],
"refseq_name":[
"ushA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1378",
"name":"pykF",
"notes":{
"original_bigg_ids":[
"STM1378"
]
},
"annotation":{
"ncbigi":[
"16419898"
],
"refseq_locus_tag":[
"STM1378"
],
"refseq_name":[
"pykF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0129",
"name":"murC",
"notes":{
"original_bigg_ids":[
"STM0129"
]
},
"annotation":{
"ncbigi":[
"16418629"
],
"refseq_locus_tag":[
"STM0129"
],
"refseq_name":[
"murC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0659",
"name":"hscC",
"notes":{
"original_bigg_ids":[
"STM0659"
]
},
"annotation":{
"ncbigi":[
"16419172"
],
"refseq_locus_tag":[
"STM0659"
],
"refseq_name":[
"hscC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4137",
"name":"murB",
"notes":{
"original_bigg_ids":[
"STM4137"
]
},
"annotation":{
"ncbigi":[
"16422699"
],
"refseq_locus_tag":[
"STM4137"
],
"refseq_name":[
"murB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1888",
"name":"pykA",
"notes":{
"original_bigg_ids":[
"STM1888"
]
},
"annotation":{
"ncbigi":[
"16420424"
],
"refseq_locus_tag":[
"STM1888"
],
"refseq_name":[
"pykA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4349",
"name":"yjeQ",
"notes":{
"original_bigg_ids":[
"STM4349"
]
},
"annotation":{
"ncbigi":[
"16422912"
],
"refseq_locus_tag":[
"STM4349"
],
"refseq_name":[
"yjeQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0865",
"name":"ybjG",
"notes":{
"original_bigg_ids":[
"STM0865"
]
},
"annotation":{
"ncbigi":[
"16419373"
],
"refseq_locus_tag":[
"STM0865"
],
"refseq_name":[
"ybjG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3968",
"name":"udp",
"notes":{
"original_bigg_ids":[
"STM3968"
]
},
"annotation":{
"ncbigi":[
"16422533"
],
"refseq_locus_tag":[
"STM3968"
],
"refseq_name":[
"udp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4584",
"name":"yjjX",
"notes":{
"original_bigg_ids":[
"STM4584"
]
},
"annotation":{
"ncbigi":[
"16423150"
],
"refseq_locus_tag":[
"STM4584"
],
"refseq_name":[
"yjjX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3205",
"name":"bacA",
"notes":{
"original_bigg_ids":[
"STM3205"
]
},
"annotation":{
"ncbigi":[
"16421762"
],
"refseq_locus_tag":[
"STM3205"
],
"refseq_name":[
"bacA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2954",
"name":"mazG",
"notes":{
"original_bigg_ids":[
"STM2954"
]
},
"annotation":{
"ncbigi":[
"16421505"
],
"refseq_locus_tag":[
"STM2954"
],
"refseq_name":[
"mazG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0221",
"name":"uppS",
"notes":{
"original_bigg_ids":[
"STM0221"
]
},
"annotation":{
"ncbigi":[
"16418726"
],
"refseq_locus_tag":[
"STM0221"
],
"refseq_name":[
"uppS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3180",
"name":"ygiN",
"notes":{
"original_bigg_ids":[
"STM3180"
]
},
"annotation":{
"ncbigi":[
"16421736"
],
"refseq_locus_tag":[
"STM3180"
],
"refseq_name":[
"ygiN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0756",
"name":"nadA",
"notes":{
"original_bigg_ids":[
"STM0756"
]
},
"annotation":{
"ncbigi":[
"16419262"
],
"refseq_locus_tag":[
"STM0756"
],
"refseq_name":[
"nadA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3103",
"name":"yggV",
"notes":{
"original_bigg_ids":[
"STM3103"
]
},
"annotation":{
"ncbigi":[
"16421656"
],
"refseq_locus_tag":[
"STM3103"
],
"refseq_name":[
"yggV"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1426",
"name":"ribE",
"notes":{
"original_bigg_ids":[
"STM1426"
]
},
"annotation":{
"ncbigi":[
"16419946"
],
"refseq_locus_tag":[
"STM1426"
],
"refseq_name":[
"ribE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0417",
"name":"ribH",
"notes":{
"original_bigg_ids":[
"STM0417"
]
},
"annotation":{
"ncbigi":[
"16418922"
],
"refseq_locus_tag":[
"STM0417"
],
"refseq_name":[
"ribH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3885",
"name":"rbsK",
"notes":{
"original_bigg_ids":[
"STM3885"
]
},
"annotation":{
"ncbigi":[
"16422460"
],
"refseq_locus_tag":[
"STM3885"
],
"refseq_name":[
"rbsK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0776",
"name":"galE",
"notes":{
"original_bigg_ids":[
"STM0776"
]
},
"annotation":{
"ncbigi":[
"16419281"
],
"refseq_locus_tag":[
"STM0776"
],
"refseq_name":[
"galE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2080",
"name":"udg",
"notes":{
"original_bigg_ids":[
"STM2080"
]
},
"annotation":{
"ncbigi":[
"16420612"
],
"refseq_locus_tag":[
"STM2080"
],
"refseq_name":[
"udg"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2295",
"name":"yfaO",
"notes":{
"original_bigg_ids":[
"STM2295"
]
},
"annotation":{
"ncbigi":[
"16420835"
],
"refseq_locus_tag":[
"STM2295"
],
"refseq_name":[
"yfaO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3793",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3793"
]
},
"annotation":{
"ncbigi":[
"16422363"
],
"refseq_locus_tag":[
"STM3793"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0103",
"name":"araB",
"notes":{
"original_bigg_ids":[
"STM0103"
]
},
"annotation":{
"ncbigi":[
"16418601"
],
"refseq_locus_tag":[
"STM0103"
],
"refseq_name":[
"araB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2299",
"name":"yfbG",
"notes":{
"original_bigg_ids":[
"STM2299"
]
},
"annotation":{
"ncbigi":[
"16420839"
],
"refseq_locus_tag":[
"STM2299"
],
"refseq_name":[
"yfbG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1301",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1301"
]
},
"annotation":{
"ncbigi":[
"16419818"
],
"refseq_locus_tag":[
"STM1301"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2297",
"name":"yfbE",
"notes":{
"original_bigg_ids":[
"STM2297"
]
},
"annotation":{
"ncbigi":[
"16420837"
],
"refseq_locus_tag":[
"STM2297"
],
"refseq_name":[
"yfbE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0775",
"name":"galT",
"notes":{
"original_bigg_ids":[
"STM0775"
]
},
"annotation":{
"ncbigi":[
"16419280"
],
"refseq_locus_tag":[
"STM0775"
],
"refseq_name":[
"galT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4388",
"name":"sgaE",
"notes":{
"original_bigg_ids":[
"STM4388"
]
},
"annotation":{
"ncbigi":[
"16422949"
],
"refseq_locus_tag":[
"STM4388"
],
"refseq_name":[
"sgaE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0208",
"name":"dgt",
"notes":{
"original_bigg_ids":[
"STM0208"
]
},
"annotation":{
"ncbigi":[
"16418712"
],
"refseq_locus_tag":[
"STM0208"
],
"refseq_name":[
"dgt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3474",
"name":"nirB",
"notes":{
"original_bigg_ids":[
"STM3474"
]
},
"annotation":{
"ncbigi":[
"16422031"
],
"refseq_locus_tag":[
"STM3474"
],
"refseq_name":[
"nirB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3677",
"name":"sgbE",
"notes":{
"original_bigg_ids":[
"STM3677"
]
},
"annotation":{
"ncbigi":[
"16422242"
],
"refseq_locus_tag":[
"STM3677"
],
"refseq_name":[
"sgbE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0515",
"name":"allA",
"notes":{
"original_bigg_ids":[
"STM0515"
]
},
"annotation":{
"ncbigi":[
"16419025"
],
"refseq_locus_tag":[
"STM0515"
],
"refseq_name":[
"allA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3475",
"name":"nirD",
"notes":{
"original_bigg_ids":[
"STM3475"
]
},
"annotation":{
"ncbigi":[
"16422032"
],
"refseq_locus_tag":[
"STM3475"
],
"refseq_name":[
"nirD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0124",
"name":"murF",
"notes":{
"original_bigg_ids":[
"STM0124"
]
},
"annotation":{
"ncbigi":[
"16418623"
],
"refseq_locus_tag":[
"STM0124"
],
"refseq_name":[
"murF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0101",
"name":"araD",
"notes":{
"original_bigg_ids":[
"STM0101"
]
},
"annotation":{
"ncbigi":[
"16418599"
],
"refseq_locus_tag":[
"STM0101"
],
"refseq_name":[
"araD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4279",
"name":"nrfC",
"notes":{
"original_bigg_ids":[
"STM4279"
]
},
"annotation":{
"ncbigi":[
"16422839"
],
"refseq_locus_tag":[
"STM4279"
],
"refseq_name":[
"nrfC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3720",
"name":"yibR",
"notes":{
"original_bigg_ids":[
"STM3720"
]
},
"annotation":{
"ncbigi":[
"16422288"
],
"refseq_locus_tag":[
"STM3720"
],
"refseq_name":[
"yibR"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0134",
"name":"lpxC",
"notes":{
"original_bigg_ids":[
"STM0134"
]
},
"annotation":{
"ncbigi":[
"16418634"
],
"refseq_locus_tag":[
"STM0134"
],
"refseq_name":[
"lpxC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4277",
"name":"nrfA",
"notes":{
"original_bigg_ids":[
"STM4277"
]
},
"annotation":{
"ncbigi":[
"16422837"
],
"refseq_locus_tag":[
"STM4277"
],
"refseq_name":[
"nrfA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2817",
"name":"luxS",
"notes":{
"original_bigg_ids":[
"STM2817"
]
},
"annotation":{
"ncbigi":[
"16421366"
],
"refseq_locus_tag":[
"STM2817"
],
"refseq_name":[
"luxS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4280",
"name":"nrfD",
"notes":{
"original_bigg_ids":[
"STM4280"
]
},
"annotation":{
"ncbigi":[
"16422840"
],
"refseq_locus_tag":[
"STM4280"
],
"refseq_name":[
"nrfD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3241",
"name":"tdcE",
"notes":{
"original_bigg_ids":[
"STM3241"
]
},
"annotation":{
"ncbigi":[
"16421799"
],
"refseq_locus_tag":[
"STM3241"
],
"refseq_name":[
"tdcE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3883",
"name":"rbsC",
"notes":{
"original_bigg_ids":[
"STM3883"
]
},
"annotation":{
"ncbigi":[
"16422458"
],
"refseq_locus_tag":[
"STM3883"
],
"refseq_name":[
"rbsC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3881",
"name":"rbsD",
"notes":{
"original_bigg_ids":[
"STM3881"
]
},
"annotation":{
"ncbigi":[
"16422456"
],
"refseq_locus_tag":[
"STM3881"
],
"refseq_name":[
"rbsD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4416",
"name":"mpl",
"notes":{
"original_bigg_ids":[
"STM4416"
]
},
"annotation":{
"ncbigi":[
"16422979"
],
"refseq_locus_tag":[
"STM4416"
],
"refseq_name":[
"mpl"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0973",
"name":"pflB",
"notes":{
"original_bigg_ids":[
"STM0973"
]
},
"annotation":{
"ncbigi":[
"16419484"
],
"refseq_locus_tag":[
"STM0973"
],
"refseq_name":[
"pflB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0218",
"name":"pyrH",
"notes":{
"original_bigg_ids":[
"STM0218"
]
},
"annotation":{
"ncbigi":[
"16418722"
],
"refseq_locus_tag":[
"STM0218"
],
"refseq_name":[
"pyrH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3882",
"name":"rbsA",
"notes":{
"original_bigg_ids":[
"STM3882"
]
},
"annotation":{
"ncbigi":[
"16422457"
],
"refseq_locus_tag":[
"STM3882"
],
"refseq_name":[
"rbsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2646",
"name":"yfiD",
"notes":{
"original_bigg_ids":[
"STM2646"
]
},
"annotation":{
"ncbigi":[
"16421196"
],
"refseq_locus_tag":[
"STM2646"
],
"refseq_name":[
"yfiD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3884",
"name":"rbsB",
"notes":{
"original_bigg_ids":[
"STM3884"
]
},
"annotation":{
"ncbigi":[
"16422459"
],
"refseq_locus_tag":[
"STM3884"
],
"refseq_name":[
"rbsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2298",
"name":"pmrF",
"notes":{
"original_bigg_ids":[
"STM2298"
]
},
"annotation":{
"ncbigi":[
"16420838"
],
"refseq_locus_tag":[
"STM2298"
],
"refseq_name":[
"pmrF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0970",
"name":"pflA",
"notes":{
"original_bigg_ids":[
"STM0970"
]
},
"annotation":{
"ncbigi":[
"16419481"
],
"refseq_locus_tag":[
"STM0970"
],
"refseq_name":[
"pflA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3936",
"name":"hemX",
"notes":{
"original_bigg_ids":[
"STM3936"
]
},
"annotation":{
"ncbigi":[
"16422500"
],
"refseq_locus_tag":[
"STM3936"
],
"refseq_name":[
"hemX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4047",
"name":"rhaB",
"notes":{
"original_bigg_ids":[
"STM4047"
]
},
"annotation":{
"ncbigi":[
"16422612"
],
"refseq_locus_tag":[
"STM4047"
],
"refseq_name":[
"rhaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3305",
"name":"ispB",
"notes":{
"original_bigg_ids":[
"STM3305"
]
},
"annotation":{
"ncbigi":[
"16421862"
],
"refseq_locus_tag":[
"STM3305"
],
"refseq_name":[
"ispB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4045",
"name":"rhaD",
"notes":{
"original_bigg_ids":[
"STM4045"
]
},
"annotation":{
"ncbigi":[
"16422610"
],
"refseq_locus_tag":[
"STM4045"
],
"refseq_name":[
"rhaD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3937",
"name":"hemD",
"notes":{
"original_bigg_ids":[
"STM3937"
]
},
"annotation":{
"ncbigi":[
"16422501"
],
"refseq_locus_tag":[
"STM3937"
],
"refseq_name":[
"hemD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0977",
"name":"serC",
"notes":{
"original_bigg_ids":[
"STM0977"
]
},
"annotation":{
"ncbigi":[
"16419489"
],
"refseq_locus_tag":[
"STM0977"
],
"refseq_name":[
"serC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0671",
"name":"ubiF",
"notes":{
"original_bigg_ids":[
"STM0671"
]
},
"annotation":{
"ncbigi":[
"16419185"
],
"refseq_locus_tag":[
"STM0671"
],
"refseq_name":[
"ubiF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2498",
"name":"upp",
"notes":{
"original_bigg_ids":[
"STM2498"
]
},
"annotation":{
"ncbigi":[
"16421040"
],
"refseq_locus_tag":[
"STM2498"
],
"refseq_name":[
"upp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2278",
"name":"nrdB",
"notes":{
"original_bigg_ids":[
"STM2278"
]
},
"annotation":{
"ncbigi":[
"16420817"
],
"refseq_locus_tag":[
"STM2278"
],
"refseq_name":[
"nrdB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1707",
"name":"pyrF",
"notes":{
"original_bigg_ids":[
"STM1707"
]
},
"annotation":{
"ncbigi":[
"16420236"
],
"refseq_locus_tag":[
"STM1707"
],
"refseq_name":[
"pyrF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2807",
"name":"nrdE",
"notes":{
"original_bigg_ids":[
"STM2807"
]
},
"annotation":{
"ncbigi":[
"16421356"
],
"refseq_locus_tag":[
"STM2807"
],
"refseq_name":[
"nrdE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2808",
"name":"nrdF",
"notes":{
"original_bigg_ids":[
"STM2808"
]
},
"annotation":{
"ncbigi":[
"16421357"
],
"refseq_locus_tag":[
"STM2808"
],
"refseq_name":[
"nrdF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2497",
"name":"uraA",
"notes":{
"original_bigg_ids":[
"STM2497"
]
},
"annotation":{
"ncbigi":[
"16421039"
],
"refseq_locus_tag":[
"STM2497"
],
"refseq_name":[
"uraA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0528",
"name":"allD",
"notes":{
"original_bigg_ids":[
"STM0528"
]
},
"annotation":{
"ncbigi":[
"16419038"
],
"refseq_locus_tag":[
"STM0528"
],
"refseq_name":[
"allD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3057",
"name":"ubiH",
"notes":{
"original_bigg_ids":[
"STM3057"
]
},
"annotation":{
"ncbigi":[
"16421608"
],
"refseq_locus_tag":[
"STM3057"
],
"refseq_name":[
"ubiH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0535",
"name":"lpxH",
"notes":{
"original_bigg_ids":[
"STM0535"
]
},
"annotation":{
"ncbigi":[
"16419045"
],
"refseq_locus_tag":[
"STM0535"
],
"refseq_name":[
"lpxH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2277",
"name":"nrdA",
"notes":{
"original_bigg_ids":[
"STM2277"
]
},
"annotation":{
"ncbigi":[
"16420816"
],
"refseq_locus_tag":[
"STM2277"
],
"refseq_name":[
"nrdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2356",
"name":"ubiX",
"notes":{
"original_bigg_ids":[
"STM2356"
]
},
"annotation":{
"ncbigi":[
"16420899"
],
"refseq_locus_tag":[
"STM2356"
],
"refseq_name":[
"ubiX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3978",
"name":"yigC",
"notes":{
"original_bigg_ids":[
"STM3978"
]
},
"annotation":{
"ncbigi":[
"16422543"
],
"refseq_locus_tag":[
"STM3978"
],
"refseq_name":[
"yigC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3972",
"name":"aarF",
"notes":{
"original_bigg_ids":[
"STM3972"
]
},
"annotation":{
"ncbigi":[
"16422537"
],
"refseq_locus_tag":[
"STM3972"
],
"refseq_name":[
"aarF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4451",
"name":"nrdG",
"notes":{
"original_bigg_ids":[
"STM4451"
]
},
"annotation":{
"ncbigi":[
"16423015"
],
"refseq_locus_tag":[
"STM4451"
],
"refseq_name":[
"nrdG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4475",
"name":"valS",
"notes":{
"original_bigg_ids":[
"STM4475"
]
},
"annotation":{
"ncbigi":[
"16423040"
],
"refseq_locus_tag":[
"STM4475"
],
"refseq_name":[
"valS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0701",
"name":"speF",
"notes":{
"original_bigg_ids":[
"STM0701"
]
},
"annotation":{
"ncbigi":[
"16419209"
],
"refseq_locus_tag":[
"STM0701"
],
"refseq_name":[
"speF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3665",
"name":"avtA",
"notes":{
"original_bigg_ids":[
"STM3665"
]
},
"annotation":{
"ncbigi":[
"16422230"
],
"refseq_locus_tag":[
"STM3665"
],
"refseq_name":[
"avtA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4452",
"name":"nrdD",
"notes":{
"original_bigg_ids":[
"STM4452"
]
},
"annotation":{
"ncbigi":[
"16423016"
],
"refseq_locus_tag":[
"STM4452"
],
"refseq_name":[
"nrdD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3483",
"name":"rpe",
"notes":{
"original_bigg_ids":[
"STM3483"
]
},
"annotation":{
"ncbigi":[
"16422041"
],
"refseq_locus_tag":[
"STM3483"
],
"refseq_name":[
"rpe"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3114",
"name":"speC",
"notes":{
"original_bigg_ids":[
"STM3114"
]
},
"annotation":{
"ncbigi":[
"16421668"
],
"refseq_locus_tag":[
"STM3114"
],
"refseq_name":[
"speC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4080",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4080"
]
},
"annotation":{
"ncbigi":[
"16422646"
],
"refseq_locus_tag":[
"STM4080"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4387",
"name":"sgaU",
"notes":{
"original_bigg_ids":[
"STM4387"
]
},
"annotation":{
"ncbigi":[
"16422948"
],
"refseq_locus_tag":[
"STM4387"
],
"refseq_name":[
"sgaU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3733",
"name":"pyrE",
"notes":{
"original_bigg_ids":[
"STM3733"
]
},
"annotation":{
"ncbigi":[
"16422301"
],
"refseq_locus_tag":[
"STM3733"
],
"refseq_name":[
"pyrE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3661",
"name":"xylA",
"notes":{
"original_bigg_ids":[
"STM3661"
]
},
"annotation":{
"ncbigi":[
"16422225"
],
"refseq_locus_tag":[
"STM3661"
],
"refseq_name":[
"xylA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1617",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1617"
]
},
"annotation":{
"ncbigi":[
"16420142"
],
"refseq_locus_tag":[
"STM1617"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2309",
"name":"menD",
"notes":{
"original_bigg_ids":[
"STM2309"
]
},
"annotation":{
"ncbigi":[
"16420849"
],
"refseq_locus_tag":[
"STM2309"
],
"refseq_name":[
"menD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1933",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1933"
]
},
"annotation":{
"ncbigi":[
"16420470"
],
"refseq_locus_tag":[
"STM1933"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3671",
"name":"yiaM",
"notes":{
"original_bigg_ids":[
"STM3671"
]
},
"annotation":{
"ncbigi":[
"16422236"
],
"refseq_locus_tag":[
"STM3671"
],
"refseq_name":[
"yiaM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1124",
"name":"putA",
"notes":{
"original_bigg_ids":[
"STM1124"
]
},
"annotation":{
"ncbigi":[
"16419639"
],
"refseq_locus_tag":[
"STM1124"
],
"refseq_name":[
"putA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3672",
"name":"yiaN",
"notes":{
"original_bigg_ids":[
"STM3672"
]
},
"annotation":{
"ncbigi":[
"16422237"
],
"refseq_locus_tag":[
"STM3672"
],
"refseq_name":[
"yiaN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3063",
"name":"rpiA",
"notes":{
"original_bigg_ids":[
"STM3063"
]
},
"annotation":{
"ncbigi":[
"16421615"
],
"refseq_locus_tag":[
"STM3063"
],
"refseq_name":[
"rpiA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0386",
"name":"proC",
"notes":{
"original_bigg_ids":[
"STM0386"
]
},
"annotation":{
"ncbigi":[
"16418889"
],
"refseq_locus_tag":[
"STM0386"
],
"refseq_name":[
"proC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0310",
"name":"ghmA",
"notes":{
"original_bigg_ids":[
"STM0310"
]
},
"annotation":{
"ncbigi":[
"16418812"
],
"refseq_locus_tag":[
"STM0310"
],
"refseq_name":[
"ghmA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3673",
"name":"yiaO",
"notes":{
"original_bigg_ids":[
"STM3673"
]
},
"annotation":{
"ncbigi":[
"16422238"
],
"refseq_locus_tag":[
"STM3673"
],
"refseq_name":[
"yiaO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0181",
"name":"panC",
"notes":{
"original_bigg_ids":[
"STM0181"
]
},
"annotation":{
"ncbigi":[
"16418683"
],
"refseq_locus_tag":[
"STM0181"
],
"refseq_name":[
"panC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0042",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0042"
]
},
"annotation":{
"ncbigi":[
"16418537"
],
"refseq_locus_tag":[
"STM0042"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1306",
"name":"astB",
"notes":{
"original_bigg_ids":[
"STM1306"
]
},
"annotation":{
"ncbigi":[
"16419823"
],
"refseq_locus_tag":[
"STM1306"
],
"refseq_name":[
"astB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1710",
"name":"pgpB",
"notes":{
"original_bigg_ids":[
"STM1710"
]
},
"annotation":{
"ncbigi":[
"16420240"
],
"refseq_locus_tag":[
"STM1710"
],
"refseq_name":[
"pgpB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0125",
"name":"mraY",
"notes":{
"original_bigg_ids":[
"STM0125"
]
},
"annotation":{
"ncbigi":[
"16418624"
],
"refseq_locus_tag":[
"STM0125"
],
"refseq_name":[
"mraY"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1893",
"name":"znuB",
"notes":{
"original_bigg_ids":[
"STM1893"
]
},
"annotation":{
"ncbigi":[
"16420429"
],
"refseq_locus_tag":[
"STM1893"
],
"refseq_name":[
"znuB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2946",
"name":"cysH",
"notes":{
"original_bigg_ids":[
"STM2946"
]
},
"annotation":{
"ncbigi":[
"16421496"
],
"refseq_locus_tag":[
"STM2946"
],
"refseq_name":[
"cysH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1891",
"name":"znuA",
"notes":{
"original_bigg_ids":[
"STM1891"
]
},
"annotation":{
"ncbigi":[
"16420427"
],
"refseq_locus_tag":[
"STM1891"
],
"refseq_name":[
"znuA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2934",
"name":"cysN",
"notes":{
"original_bigg_ids":[
"STM2934"
]
},
"annotation":{
"ncbigi":[
"16421483"
],
"refseq_locus_tag":[
"STM2934"
],
"refseq_name":[
"cysN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2935",
"name":"cysD",
"notes":{
"original_bigg_ids":[
"STM2935"
]
},
"annotation":{
"ncbigi":[
"16421484"
],
"refseq_locus_tag":[
"STM2935"
],
"refseq_name":[
"cysD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0153",
"name":"aceF",
"notes":{
"original_bigg_ids":[
"STM0153"
]
},
"annotation":{
"ncbigi":[
"16418654"
],
"refseq_locus_tag":[
"STM0153"
],
"refseq_name":[
"aceF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2835",
"name":"srlD",
"notes":{
"original_bigg_ids":[
"STM2835"
]
},
"annotation":{
"ncbigi":[
"16421380"
],
"refseq_locus_tag":[
"STM2835"
],
"refseq_name":[
"srlD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4167",
"name":"hemE",
"notes":{
"original_bigg_ids":[
"STM4167"
]
},
"annotation":{
"ncbigi":[
"16422725"
],
"refseq_locus_tag":[
"STM4167"
],
"refseq_name":[
"hemE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2832",
"name":"srlA",
"notes":{
"original_bigg_ids":[
"STM2832"
]
},
"annotation":{
"ncbigi":[
"16421377"
],
"refseq_locus_tag":[
"STM2832"
],
"refseq_name":[
"srlA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2833",
"name":"srlE",
"notes":{
"original_bigg_ids":[
"STM2833"
]
},
"annotation":{
"ncbigi":[
"16421378"
],
"refseq_locus_tag":[
"STM2833"
],
"refseq_name":[
"srlE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2834",
"name":"slrB",
"notes":{
"original_bigg_ids":[
"STM2834"
]
},
"annotation":{
"ncbigi":[
"16421379"
],
"refseq_locus_tag":[
"STM2834"
],
"refseq_name":[
"slrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4159",
"name":"thiH",
"notes":{
"original_bigg_ids":[
"STM4159"
]
},
"annotation":{
"ncbigi":[
"16422717"
],
"refseq_locus_tag":[
"STM4159"
],
"refseq_name":[
"thiH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0425",
"name":"thiI",
"notes":{
"original_bigg_ids":[
"STM0425"
]
},
"annotation":{
"ncbigi":[
"16418930"
],
"refseq_locus_tag":[
"STM0425"
],
"refseq_name":[
"thiI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4162",
"name":"thiF",
"notes":{
"original_bigg_ids":[
"STM4162"
]
},
"annotation":{
"ncbigi":[
"16422720"
],
"refseq_locus_tag":[
"STM4162"
],
"refseq_name":[
"thiF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4066",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4066"
]
},
"annotation":{
"ncbigi":[
"16422632"
],
"refseq_locus_tag":[
"STM4066"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4160",
"name":"thiG",
"notes":{
"original_bigg_ids":[
"STM4160"
]
},
"annotation":{
"ncbigi":[
"16422718"
],
"refseq_locus_tag":[
"STM4160"
],
"refseq_name":[
"thiG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2483",
"name":"dapE",
"notes":{
"original_bigg_ids":[
"STM2483"
]
},
"annotation":{
"ncbigi":[
"16421025"
],
"refseq_locus_tag":[
"STM2483"
],
"refseq_name":[
"dapE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4467",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4467"
]
},
"annotation":{
"ncbigi":[
"16423031"
],
"refseq_locus_tag":[
"STM4467"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3683",
"name":"selA",
"notes":{
"original_bigg_ids":[
"STM3683"
]
},
"annotation":{
"ncbigi":[
"16422249"
],
"refseq_locus_tag":[
"STM3683"
],
"refseq_name":[
"selA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2543",
"name":"nifS",
"notes":{
"original_bigg_ids":[
"STM2543"
]
},
"annotation":{
"ncbigi":[
"16421088"
],
"refseq_locus_tag":[
"STM2543"
],
"refseq_name":[
"nifS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4161",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4161"
]
},
"annotation":{
"ncbigi":[
"16422719"
],
"refseq_locus_tag":[
"STM4161"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0426",
"name":"phnV",
"notes":{
"original_bigg_ids":[
"STM0426"
]
},
"annotation":{
"ncbigi":[
"16418931"
],
"refseq_locus_tag":[
"STM0426"
],
"refseq_name":[
"phnV"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4469",
"name":"argI",
"notes":{
"original_bigg_ids":[
"STM4469"
]
},
"annotation":{
"ncbigi":[
"16423033"
],
"refseq_locus_tag":[
"STM4469"
],
"refseq_name":[
"argI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0428",
"name":"phnT",
"notes":{
"original_bigg_ids":[
"STM0428"
]
},
"annotation":{
"ncbigi":[
"16418933"
],
"refseq_locus_tag":[
"STM0428"
],
"refseq_name":[
"phnT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0427",
"name":"phnU",
"notes":{
"original_bigg_ids":[
"STM0427"
]
},
"annotation":{
"ncbigi":[
"16418932"
],
"refseq_locus_tag":[
"STM0427"
],
"refseq_name":[
"phnU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1297",
"name":"selD",
"notes":{
"original_bigg_ids":[
"STM1297"
]
},
"annotation":{
"ncbigi":[
"16419814"
],
"refseq_locus_tag":[
"STM1297"
],
"refseq_name":[
"selD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4465",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4465"
]
},
"annotation":{
"ncbigi":[
"16423029"
],
"refseq_locus_tag":[
"STM4465"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0588",
"name":"entF",
"notes":{
"original_bigg_ids":[
"STM0588"
]
},
"annotation":{
"ncbigi":[
"16419098"
],
"refseq_locus_tag":[
"STM0588"
],
"refseq_name":[
"entF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0532",
"name":"arcC",
"notes":{
"original_bigg_ids":[
"STM0532"
]
},
"annotation":{
"ncbigi":[
"16419042"
],
"refseq_locus_tag":[
"STM0532"
],
"refseq_name":[
"arcC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3699",
"name":"cysE",
"notes":{
"original_bigg_ids":[
"STM3699"
]
},
"annotation":{
"ncbigi":[
"16422266"
],
"refseq_locus_tag":[
"STM3699"
],
"refseq_name":[
"cysE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4466",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4466"
]
},
"annotation":{
"ncbigi":[
"16423030"
],
"refseq_locus_tag":[
"STM4466"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3802",
"name":"dsdA",
"notes":{
"original_bigg_ids":[
"STM3802"
]
},
"annotation":{
"ncbigi":[
"16422375"
],
"refseq_locus_tag":[
"STM3802"
],
"refseq_name":[
"dsdA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0429",
"name":"phnS",
"notes":{
"original_bigg_ids":[
"STM0429"
]
},
"annotation":{
"ncbigi":[
"16418934"
],
"refseq_locus_tag":[
"STM0429"
],
"refseq_name":[
"phnS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2399",
"name":"pgtP",
"notes":{
"original_bigg_ids":[
"STM2399"
]
},
"annotation":{
"ncbigi":[
"16420943"
],
"refseq_locus_tag":[
"STM2399"
],
"refseq_name":[
"pgtP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0431",
"name":"phnW",
"notes":{
"original_bigg_ids":[
"STM0431"
]
},
"annotation":{
"ncbigi":[
"16418936"
],
"refseq_locus_tag":[
"STM0431"
],
"refseq_name":[
"phnW"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0432",
"name":"phnX",
"notes":{
"original_bigg_ids":[
"STM0432"
]
},
"annotation":{
"ncbigi":[
"16418937"
],
"refseq_locus_tag":[
"STM0432"
],
"refseq_name":[
"phnX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0963",
"name":"serS",
"notes":{
"original_bigg_ids":[
"STM0963"
]
},
"annotation":{
"ncbigi":[
"16419475"
],
"refseq_locus_tag":[
"STM0963"
],
"refseq_name":[
"serS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2196",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2196"
]
},
"annotation":{
"ncbigi":[
"16420734"
],
"refseq_locus_tag":[
"STM2196"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3240",
"name":"tdcG",
"notes":{
"original_bigg_ids":[
"STM3240"
]
},
"annotation":{
"ncbigi":[
"16421798"
],
"refseq_locus_tag":[
"STM3240"
],
"refseq_name":[
"tdcG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2970",
"name":"sdaC",
"notes":{
"original_bigg_ids":[
"STM2970"
]
},
"annotation":{
"ncbigi":[
"16421521"
],
"refseq_locus_tag":[
"STM2970"
],
"refseq_name":[
"sdaC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1107",
"name":"hpaX",
"notes":{
"original_bigg_ids":[
"STM1107"
]
},
"annotation":{
"ncbigi":[
"16419623"
],
"refseq_locus_tag":[
"STM1107"
],
"refseq_name":[
"hpaX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3354",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3354"
]
},
"annotation":{
"ncbigi":[
"16421913"
],
"refseq_locus_tag":[
"STM3354"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1098",
"name":"hpaC",
"notes":{
"original_bigg_ids":[
"STM1098"
]
},
"annotation":{
"ncbigi":[
"16419613"
],
"refseq_locus_tag":[
"STM1098"
],
"refseq_name":[
"hpaC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3243",
"name":"tdcC",
"notes":{
"original_bigg_ids":[
"STM3243"
]
},
"annotation":{
"ncbigi":[
"16421801"
],
"refseq_locus_tag":[
"STM3243"
],
"refseq_name":[
"tdcC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3355",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3355"
]
},
"annotation":{
"ncbigi":[
"16421914"
],
"refseq_locus_tag":[
"STM3355"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2783",
"name":"nxiA",
"notes":{
"original_bigg_ids":[
"STM2783"
]
},
"annotation":{
"ncbigi":[
"16421331"
],
"refseq_locus_tag":[
"STM2783"
],
"refseq_name":[
"nxiA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3225",
"name":"ygjU",
"notes":{
"original_bigg_ids":[
"STM3225"
]
},
"annotation":{
"ncbigi":[
"16421782"
],
"refseq_locus_tag":[
"STM3225"
],
"refseq_name":[
"ygjU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1099",
"name":"hpaB",
"notes":{
"original_bigg_ids":[
"STM1099"
]
},
"annotation":{
"ncbigi":[
"16419614"
],
"refseq_locus_tag":[
"STM1099"
],
"refseq_name":[
"hpaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1318",
"name":"katE",
"notes":{
"original_bigg_ids":[
"STM1318"
]
},
"annotation":{
"ncbigi":[
"16419836"
],
"refseq_locus_tag":[
"STM1318"
],
"refseq_name":[
"katE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1103",
"name":"hpaD",
"notes":{
"original_bigg_ids":[
"STM1103"
]
},
"annotation":{
"ncbigi":[
"16419618"
],
"refseq_locus_tag":[
"STM1103"
],
"refseq_name":[
"hpaD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1102",
"name":"hpaE",
"notes":{
"original_bigg_ids":[
"STM1102"
]
},
"annotation":{
"ncbigi":[
"16419617"
],
"refseq_locus_tag":[
"STM1102"
],
"refseq_name":[
"hpaE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2194",
"name":"yeiG",
"notes":{
"original_bigg_ids":[
"STM2194"
]
},
"annotation":{
"ncbigi":[
"16420732"
],
"refseq_locus_tag":[
"STM2194"
],
"refseq_name":[
"yeiG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1307",
"name":"astE",
"notes":{
"original_bigg_ids":[
"STM1307"
]
},
"annotation":{
"ncbigi":[
"16419824"
],
"refseq_locus_tag":[
"STM1307"
],
"refseq_name":[
"astE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1104",
"name":"hpaF",
"notes":{
"original_bigg_ids":[
"STM1104"
]
},
"annotation":{
"ncbigi":[
"16419619"
],
"refseq_locus_tag":[
"STM1104"
],
"refseq_name":[
"hpaF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4106",
"name":"katG",
"notes":{
"original_bigg_ids":[
"STM4106"
]
},
"annotation":{
"ncbigi":[
"16422673"
],
"refseq_locus_tag":[
"STM4106"
],
"refseq_name":[
"katG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1101",
"name":"hpaG",
"notes":{
"original_bigg_ids":[
"STM1101"
]
},
"annotation":{
"ncbigi":[
"16419616"
],
"refseq_locus_tag":[
"STM1101"
],
"refseq_name":[
"hpaG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1305",
"name":"astD",
"notes":{
"original_bigg_ids":[
"STM1305"
]
},
"annotation":{
"ncbigi":[
"16419822"
],
"refseq_locus_tag":[
"STM1305"
],
"refseq_name":[
"astD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1731",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1731"
]
},
"annotation":{
"ncbigi":[
"16420262"
],
"refseq_locus_tag":[
"STM1731"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3477",
"name":"cysG",
"notes":{
"original_bigg_ids":[
"STM3477"
]
},
"annotation":{
"ncbigi":[
"16422034"
],
"refseq_locus_tag":[
"STM3477"
],
"refseq_name":[
"cysG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3859",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3859"
]
},
"annotation":{
"ncbigi":[
"16422433"
],
"refseq_locus_tag":[
"STM3859"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1105",
"name":"hpaH",
"notes":{
"original_bigg_ids":[
"STM1105"
]
},
"annotation":{
"ncbigi":[
"16419621"
],
"refseq_locus_tag":[
"STM1105"
],
"refseq_name":[
"hpaH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1269",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1269"
]
},
"annotation":{
"ncbigi":[
"16419785"
],
"refseq_locus_tag":[
"STM1269"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1106",
"name":"hpaI",
"notes":{
"original_bigg_ids":[
"STM1106"
]
},
"annotation":{
"ncbigi":[
"16419622"
],
"refseq_locus_tag":[
"STM1106"
],
"refseq_name":[
"hpaI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2041",
"name":"pduD",
"notes":{
"original_bigg_ids":[
"STM2041"
]
},
"annotation":{
"ncbigi":[
"16420571"
],
"refseq_locus_tag":[
"STM2041"
],
"refseq_name":[
"pduD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1359",
"name":"ydiB",
"notes":{
"original_bigg_ids":[
"STM1359"
]
},
"annotation":{
"ncbigi":[
"16419879"
],
"refseq_locus_tag":[
"STM1359"
],
"refseq_name":[
"ydiB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1002",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1002"
]
},
"annotation":{
"ncbigi":[
"16419515"
],
"refseq_locus_tag":[
"STM1002"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2040",
"name":"pduC",
"notes":{
"original_bigg_ids":[
"STM2040"
]
},
"annotation":{
"ncbigi":[
"16420570"
],
"refseq_locus_tag":[
"STM2040"
],
"refseq_name":[
"pduC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0719",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0719"
]
},
"annotation":{
"ncbigi":[
"16419228"
],
"refseq_locus_tag":[
"STM0719"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2043",
"name":"pduG",
"notes":{
"original_bigg_ids":[
"STM2043"
]
},
"annotation":{
"ncbigi":[
"16420573"
],
"refseq_locus_tag":[
"STM2043"
],
"refseq_name":[
"pduG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2042",
"name":"pduE",
"notes":{
"original_bigg_ids":[
"STM2042"
]
},
"annotation":{
"ncbigi":[
"16420572"
],
"refseq_locus_tag":[
"STM2042"
],
"refseq_name":[
"pduE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3401",
"name":"aroE",
"notes":{
"original_bigg_ids":[
"STM3401"
]
},
"annotation":{
"ncbigi":[
"16421957"
],
"refseq_locus_tag":[
"STM3401"
],
"refseq_name":[
"aroE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3487",
"name":"aroK",
"notes":{
"original_bigg_ids":[
"STM3487"
]
},
"annotation":{
"ncbigi":[
"16422045"
],
"refseq_locus_tag":[
"STM3487"
],
"refseq_name":[
"aroK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3147",
"name":"hybC",
"notes":{
"original_bigg_ids":[
"STM3147"
]
},
"annotation":{
"ncbigi":[
"16421701"
],
"refseq_locus_tag":[
"STM3147"
],
"refseq_name":[
"hybC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0388",
"name":"aroL",
"notes":{
"original_bigg_ids":[
"STM0388"
]
},
"annotation":{
"ncbigi":[
"16418891"
],
"refseq_locus_tag":[
"STM0388"
],
"refseq_name":[
"aroL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1502",
"name":"speG",
"notes":{
"original_bigg_ids":[
"STM1502"
]
},
"annotation":{
"ncbigi":[
"16420022"
],
"refseq_locus_tag":[
"STM1502"
],
"refseq_name":[
"speG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2044",
"name":"pduH",
"notes":{
"original_bigg_ids":[
"STM2044"
]
},
"annotation":{
"ncbigi":[
"16420574"
],
"refseq_locus_tag":[
"STM2044"
],
"refseq_name":[
"pduH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1539",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1539"
]
},
"annotation":{
"ncbigi":[
"16420060"
],
"refseq_locus_tag":[
"STM1539"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2052",
"name":"pduQ",
"notes":{
"original_bigg_ids":[
"STM2052"
]
},
"annotation":{
"ncbigi":[
"16420582"
],
"refseq_locus_tag":[
"STM2052"
],
"refseq_name":[
"pduQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2051",
"name":"pduP",
"notes":{
"original_bigg_ids":[
"STM2051"
]
},
"annotation":{
"ncbigi":[
"16420581"
],
"refseq_locus_tag":[
"STM2051"
],
"refseq_name":[
"pduP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0166",
"name":"speE",
"notes":{
"original_bigg_ids":[
"STM0166"
]
},
"annotation":{
"ncbigi":[
"16418667"
],
"refseq_locus_tag":[
"STM0166"
],
"refseq_name":[
"speE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1538",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1538"
]
},
"annotation":{
"ncbigi":[
"16420059"
],
"refseq_locus_tag":[
"STM1538"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1431",
"name":"sodB",
"notes":{
"original_bigg_ids":[
"STM1431"
]
},
"annotation":{
"ncbigi":[
"16419951"
],
"refseq_locus_tag":[
"STM1431"
],
"refseq_name":[
"sodB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1786",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1786"
]
},
"annotation":{
"ncbigi":[
"16420316"
],
"refseq_locus_tag":[
"STM1786"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4055",
"name":"sodA",
"notes":{
"original_bigg_ids":[
"STM4055"
]
},
"annotation":{
"ncbigi":[
"16422620"
],
"refseq_locus_tag":[
"STM4055"
],
"refseq_name":[
"sodA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2025",
"name":"cbiK",
"notes":{
"original_bigg_ids":[
"STM2025"
]
},
"annotation":{
"ncbigi":[
"16420554"
],
"refseq_locus_tag":[
"STM2025"
],
"refseq_name":[
"cbiK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1787",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1787"
]
},
"annotation":{
"ncbigi":[
"16420317"
],
"refseq_locus_tag":[
"STM1787"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2020",
"name":"cbiO",
"notes":{
"original_bigg_ids":[
"STM2020"
]
},
"annotation":{
"ncbigi":[
"16420549"
],
"refseq_locus_tag":[
"STM2020"
],
"refseq_name":[
"cbiO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2022",
"name":"cbiN",
"notes":{
"original_bigg_ids":[
"STM2022"
]
},
"annotation":{
"ncbigi":[
"16420551"
],
"refseq_locus_tag":[
"STM2022"
],
"refseq_name":[
"cbiN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1788",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1788"
]
},
"annotation":{
"ncbigi":[
"16420318"
],
"refseq_locus_tag":[
"STM1788"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1440",
"name":"sodC",
"notes":{
"original_bigg_ids":[
"STM1440"
]
},
"annotation":{
"ncbigi":[
"16419960"
],
"refseq_locus_tag":[
"STM1440"
],
"refseq_name":[
"sodC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3150",
"name":"hypO",
"notes":{
"original_bigg_ids":[
"STM3150"
]
},
"annotation":{
"ncbigi":[
"16421704"
],
"refseq_locus_tag":[
"STM3150"
],
"refseq_name":[
"hypO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2023",
"name":"cbiM",
"notes":{
"original_bigg_ids":[
"STM2023"
]
},
"annotation":{
"ncbigi":[
"16420552"
],
"refseq_locus_tag":[
"STM2023"
],
"refseq_name":[
"cbiM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2021",
"name":"cboQ",
"notes":{
"original_bigg_ids":[
"STM2021"
]
},
"annotation":{
"ncbigi":[
"16420550"
],
"refseq_locus_tag":[
"STM2021"
],
"refseq_name":[
"cboQ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2024",
"name":"cbiL",
"notes":{
"original_bigg_ids":[
"STM2024"
]
},
"annotation":{
"ncbigi":[
"16420553"
],
"refseq_locus_tag":[
"STM2024"
],
"refseq_name":[
"cbiL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3356",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3356"
]
},
"annotation":{
"ncbigi":[
"16421915"
],
"refseq_locus_tag":[
"STM3356"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2027",
"name":"cbiH",
"notes":{
"original_bigg_ids":[
"STM2027"
]
},
"annotation":{
"ncbigi":[
"16420556"
],
"refseq_locus_tag":[
"STM2027"
],
"refseq_name":[
"cbiH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1044",
"name":"sodC",
"notes":{
"original_bigg_ids":[
"STM1044"
]
},
"annotation":{
"ncbigi":[
"16419559"
],
"refseq_locus_tag":[
"STM1044"
],
"refseq_name":[
"sodC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3697",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3697"
]
},
"annotation":{
"ncbigi":[
"16422264"
],
"refseq_locus_tag":[
"STM3697"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2791",
"name":"gabD",
"notes":{
"original_bigg_ids":[
"STM2791"
]
},
"annotation":{
"ncbigi":[
"16421339"
],
"refseq_locus_tag":[
"STM2791"
],
"refseq_name":[
"gabD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3250",
"name":"garD",
"notes":{
"original_bigg_ids":[
"STM3250"
]
},
"annotation":{
"ncbigi":[
"16421807"
],
"refseq_locus_tag":[
"STM3250"
],
"refseq_name":[
"garD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2305",
"name":"menE",
"notes":{
"original_bigg_ids":[
"STM2305"
]
},
"annotation":{
"ncbigi":[
"16420845"
],
"refseq_locus_tag":[
"STM2305"
],
"refseq_name":[
"menE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4100",
"name":"metB",
"notes":{
"original_bigg_ids":[
"STM4100"
]
},
"annotation":{
"ncbigi":[
"16422667"
],
"refseq_locus_tag":[
"STM4100"
],
"refseq_name":[
"metB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2306",
"name":"menC",
"notes":{
"original_bigg_ids":[
"STM2306"
]
},
"annotation":{
"ncbigi":[
"16420846"
],
"refseq_locus_tag":[
"STM2306"
],
"refseq_name":[
"menC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0733",
"name":"sdhD",
"notes":{
"original_bigg_ids":[
"STM0733"
]
},
"annotation":{
"ncbigi":[
"16419243"
],
"refseq_locus_tag":[
"STM0733"
],
"refseq_name":[
"sdhD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2029",
"name":"cbiF",
"notes":{
"original_bigg_ids":[
"STM2029"
]
},
"annotation":{
"ncbigi":[
"16420558"
],
"refseq_locus_tag":[
"STM2029"
],
"refseq_name":[
"cbiF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2028",
"name":"cbiG",
"notes":{
"original_bigg_ids":[
"STM2028"
]
},
"annotation":{
"ncbigi":[
"16420557"
],
"refseq_locus_tag":[
"STM2028"
],
"refseq_name":[
"cbiG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2032",
"name":"cbiD",
"notes":{
"original_bigg_ids":[
"STM2032"
]
},
"annotation":{
"ncbigi":[
"16420561"
],
"refseq_locus_tag":[
"STM2032"
],
"refseq_name":[
"cbiD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3624A",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3624A"
]
},
"annotation":{
"ncbigi":[
"16422189"
],
"refseq_locus_tag":[
"STM3624A"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2026",
"name":"cbiJ",
"notes":{
"original_bigg_ids":[
"STM2026"
]
},
"annotation":{
"ncbigi":[
"16420555"
],
"refseq_locus_tag":[
"STM2026"
],
"refseq_name":[
"cbiJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2031",
"name":"cbiE",
"notes":{
"original_bigg_ids":[
"STM2031"
]
},
"annotation":{
"ncbigi":[
"16420560"
],
"refseq_locus_tag":[
"STM2031"
],
"refseq_name":[
"cbiE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0732",
"name":"sdhC",
"notes":{
"original_bigg_ids":[
"STM0732"
]
},
"annotation":{
"ncbigi":[
"16419242"
],
"refseq_locus_tag":[
"STM0732"
],
"refseq_name":[
"sdhC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0735",
"name":"sdhB",
"notes":{
"original_bigg_ids":[
"STM0735"
]
},
"annotation":{
"ncbigi":[
"16419245"
],
"refseq_locus_tag":[
"STM0735"
],
"refseq_name":[
"sdhB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4301",
"name":"dcuB",
"notes":{
"original_bigg_ids":[
"STM4301"
]
},
"annotation":{
"ncbigi":[
"16422863"
],
"refseq_locus_tag":[
"STM4301"
],
"refseq_name":[
"dcuB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0734",
"name":"sdhA",
"notes":{
"original_bigg_ids":[
"STM0734"
]
},
"annotation":{
"ncbigi":[
"16419244"
],
"refseq_locus_tag":[
"STM0734"
],
"refseq_name":[
"sdhA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2030",
"name":"cbiT",
"notes":{
"original_bigg_ids":[
"STM2030"
]
},
"annotation":{
"ncbigi":[
"16420559"
],
"refseq_locus_tag":[
"STM2030"
],
"refseq_name":[
"cbiT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3599",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3599"
]
},
"annotation":{
"ncbigi":[
"16422161"
],
"refseq_locus_tag":[
"STM3599"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2033",
"name":"cbiC",
"notes":{
"original_bigg_ids":[
"STM2033"
]
},
"annotation":{
"ncbigi":[
"16420562"
],
"refseq_locus_tag":[
"STM2033"
],
"refseq_name":[
"cbiC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0738",
"name":"sucC",
"notes":{
"original_bigg_ids":[
"STM0738"
]
},
"annotation":{
"ncbigi":[
"16419248"
],
"refseq_locus_tag":[
"STM0738"
],
"refseq_name":[
"sucC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4325",
"name":"dcuA",
"notes":{
"original_bigg_ids":[
"STM4325"
]
},
"annotation":{
"ncbigi":[
"16422887"
],
"refseq_locus_tag":[
"STM4325"
],
"refseq_name":[
"dcuA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0739",
"name":"sucD",
"notes":{
"original_bigg_ids":[
"STM0739"
]
},
"annotation":{
"ncbigi":[
"16419249"
],
"refseq_locus_tag":[
"STM0739"
],
"refseq_name":[
"sucD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2035",
"name":"cbiA",
"notes":{
"original_bigg_ids":[
"STM2035"
]
},
"annotation":{
"ncbigi":[
"16420564"
],
"refseq_locus_tag":[
"STM2035"
],
"refseq_name":[
"cbiA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2050",
"name":"pduO",
"notes":{
"original_bigg_ids":[
"STM2050"
]
},
"annotation":{
"ncbigi":[
"16420580"
],
"refseq_locus_tag":[
"STM2050"
],
"refseq_name":[
"pduO"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0627",
"name":"dcuC",
"notes":{
"original_bigg_ids":[
"STM0627"
]
},
"annotation":{
"ncbigi":[
"16419139"
],
"refseq_locus_tag":[
"STM0627"
],
"refseq_name":[
"dcuC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2467",
"name":"eutT",
"notes":{
"original_bigg_ids":[
"STM2467"
]
},
"annotation":{
"ncbigi":[
"16421008"
],
"refseq_locus_tag":[
"STM2467"
],
"refseq_name":[
"eutT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2019",
"name":"cbiP",
"notes":{
"original_bigg_ids":[
"STM2019"
]
},
"annotation":{
"ncbigi":[
"16420548"
],
"refseq_locus_tag":[
"STM2019"
],
"refseq_name":[
"cbiP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0007",
"name":"talB",
"notes":{
"original_bigg_ids":[
"STM0007"
]
},
"annotation":{
"ncbigi":[
"16418500"
],
"refseq_locus_tag":[
"STM0007"
],
"refseq_name":[
"talB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2473",
"name":"talA",
"notes":{
"original_bigg_ids":[
"STM2473"
]
},
"annotation":{
"ncbigi":[
"16421014"
],
"refseq_locus_tag":[
"STM2473"
],
"refseq_name":[
"talA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1599",
"name":"pdgL",
"notes":{
"original_bigg_ids":[
"STM1599"
]
},
"annotation":{
"ncbigi":[
"16420123"
],
"refseq_locus_tag":[
"STM1599"
],
"refseq_name":[
"pdgL"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3924",
"name":"wecD",
"notes":{
"original_bigg_ids":[
"STM3924"
]
},
"annotation":{
"ncbigi":[
"16422492"
],
"refseq_locus_tag":[
"STM3924"
],
"refseq_name":[
"wecD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2058",
"name":"pduX",
"notes":{
"original_bigg_ids":[
"STM2058"
]
},
"annotation":{
"ncbigi":[
"16420588"
],
"refseq_locus_tag":[
"STM2058"
],
"refseq_name":[
"pduX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1498",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1498"
]
},
"annotation":{
"ncbigi":[
"16420018"
],
"refseq_locus_tag":[
"STM1498"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0644",
"name":"cobD",
"notes":{
"original_bigg_ids":[
"STM0644"
]
},
"annotation":{
"ncbigi":[
"16419156"
],
"refseq_locus_tag":[
"STM0644"
],
"refseq_name":[
"cobD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3925",
"name":"wecE",
"notes":{
"original_bigg_ids":[
"STM3925"
]
},
"annotation":{
"ncbigi":[
"16422493"
],
"refseq_locus_tag":[
"STM3925"
],
"refseq_name":[
"wecE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2094",
"name":"rfbC",
"notes":{
"original_bigg_ids":[
"STM2094"
]
},
"annotation":{
"ncbigi":[
"16420626"
],
"refseq_locus_tag":[
"STM2094"
],
"refseq_name":[
"rfbC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0965",
"name":"dmsB",
"notes":{
"original_bigg_ids":[
"STM0965"
]
},
"annotation":{
"ncbigi":[
"16419477"
],
"refseq_locus_tag":[
"STM0965"
],
"refseq_name":[
"dmsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2096",
"name":"rfbD",
"notes":{
"original_bigg_ids":[
"STM2096"
]
},
"annotation":{
"ncbigi":[
"16420628"
],
"refseq_locus_tag":[
"STM2096"
],
"refseq_name":[
"rfbD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3922",
"name":"rffG",
"notes":{
"original_bigg_ids":[
"STM3922"
]
},
"annotation":{
"ncbigi":[
"16422490"
],
"refseq_locus_tag":[
"STM3922"
],
"refseq_name":[
"rffG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2034",
"name":"cibB",
"notes":{
"original_bigg_ids":[
"STM2034"
]
},
"annotation":{
"ncbigi":[
"16420563"
],
"refseq_locus_tag":[
"STM2034"
],
"refseq_name":[
"cibB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2017",
"name":"cobS",
"notes":{
"original_bigg_ids":[
"STM2017"
]
},
"annotation":{
"ncbigi":[
"16420546"
],
"refseq_locus_tag":[
"STM2017"
],
"refseq_name":[
"cobS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4306",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4306"
]
},
"annotation":{
"ncbigi":[
"16422868"
],
"refseq_locus_tag":[
"STM4306"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0643",
"name":"cobC",
"notes":{
"original_bigg_ids":[
"STM0643"
]
},
"annotation":{
"ncbigi":[
"16419155"
],
"refseq_locus_tag":[
"STM0643"
],
"refseq_name":[
"cobC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2088",
"name":"rfbX",
"notes":{
"original_bigg_ids":[
"STM2088"
]
},
"annotation":{
"ncbigi":[
"16420620"
],
"refseq_locus_tag":[
"STM2088"
],
"refseq_name":[
"rfbX"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2097",
"name":"rfbB",
"notes":{
"original_bigg_ids":[
"STM2097"
]
},
"annotation":{
"ncbigi":[
"16420629"
],
"refseq_locus_tag":[
"STM2097"
],
"refseq_name":[
"rfbB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0985",
"name":"lpxK",
"notes":{
"original_bigg_ids":[
"STM0985"
]
},
"annotation":{
"ncbigi":[
"16419497"
],
"refseq_locus_tag":[
"STM0985"
],
"refseq_name":[
"lpxK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2528",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2528"
]
},
"annotation":{
"ncbigi":[
"16421072"
],
"refseq_locus_tag":[
"STM2528"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0213",
"name":"dapD",
"notes":{
"original_bigg_ids":[
"STM0213"
]
},
"annotation":{
"ncbigi":[
"16418717"
],
"refseq_locus_tag":[
"STM0213"
],
"refseq_name":[
"dapD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0609",
"name":"ahpF",
"notes":{
"original_bigg_ids":[
"STM0609"
]
},
"annotation":{
"ncbigi":[
"16419120"
],
"refseq_locus_tag":[
"STM0609"
],
"refseq_name":[
"ahpF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2082",
"name":"rfbP",
"notes":{
"original_bigg_ids":[
"STM2082"
]
},
"annotation":{
"ncbigi":[
"16420614"
],
"refseq_locus_tag":[
"STM2082"
],
"refseq_name":[
"rfbP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2085",
"name":"rfbN",
"notes":{
"original_bigg_ids":[
"STM2085"
]
},
"annotation":{
"ncbigi":[
"16420617"
],
"refseq_locus_tag":[
"STM2085"
],
"refseq_name":[
"rfbN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1499",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1499"
]
},
"annotation":{
"ncbigi":[
"16420019"
],
"refseq_locus_tag":[
"STM1499"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2086",
"name":"rfbU",
"notes":{
"original_bigg_ids":[
"STM2086"
]
},
"annotation":{
"ncbigi":[
"16420618"
],
"refseq_locus_tag":[
"STM2086"
],
"refseq_name":[
"rfbU"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0402",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0402"
]
},
"annotation":{
"ncbigi":[
"16418906"
],
"refseq_locus_tag":[
"STM0402"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2529",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2529"
]
},
"annotation":{
"ncbigi":[
"16421073"
],
"refseq_locus_tag":[
"STM2529"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0608",
"name":"ahpC",
"notes":{
"original_bigg_ids":[
"STM0608"
]
},
"annotation":{
"ncbigi":[
"16419119"
],
"refseq_locus_tag":[
"STM0608"
],
"refseq_name":[
"ahpC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2087",
"name":"rfbV",
"notes":{
"original_bigg_ids":[
"STM2087"
]
},
"annotation":{
"ncbigi":[
"16420619"
],
"refseq_locus_tag":[
"STM2087"
],
"refseq_name":[
"rfbV"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2084",
"name":"rfbM",
"notes":{
"original_bigg_ids":[
"STM2084"
]
},
"annotation":{
"ncbigi":[
"16420616"
],
"refseq_locus_tag":[
"STM2084"
],
"refseq_name":[
"rfbM"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1497",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1497"
]
},
"annotation":{
"ncbigi":[
"16420017"
],
"refseq_locus_tag":[
"STM1497"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2104",
"name":"cpsG",
"notes":{
"original_bigg_ids":[
"STM2104"
]
},
"annotation":{
"ncbigi":[
"16420637"
],
"refseq_locus_tag":[
"STM2104"
],
"refseq_name":[
"cpsG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0108",
"name":"tbpA",
"notes":{
"original_bigg_ids":[
"STM0108"
]
},
"annotation":{
"ncbigi":[
"16418606"
],
"refseq_locus_tag":[
"STM0108"
],
"refseq_name":[
"tbpA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4307",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4307"
]
},
"annotation":{
"ncbigi":[
"16422869"
],
"refseq_locus_tag":[
"STM4307"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0107",
"name":"yabK",
"notes":{
"original_bigg_ids":[
"STM0107"
]
},
"annotation":{
"ncbigi":[
"16418605"
],
"refseq_locus_tag":[
"STM0107"
],
"refseq_name":[
"yabK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0106",
"name":"yabJ",
"notes":{
"original_bigg_ids":[
"STM0106"
]
},
"annotation":{
"ncbigi":[
"16418604"
],
"refseq_locus_tag":[
"STM0106"
],
"refseq_name":[
"yabJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3708",
"name":"tdh",
"notes":{
"original_bigg_ids":[
"STM3708"
]
},
"annotation":{
"ncbigi":[
"16422275"
],
"refseq_locus_tag":[
"STM3708"
],
"refseq_name":[
"tdh"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2083",
"name":"rfbK",
"notes":{
"original_bigg_ids":[
"STM2083"
]
},
"annotation":{
"ncbigi":[
"16420615"
],
"refseq_locus_tag":[
"STM2083"
],
"refseq_name":[
"rfbK"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2530",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2530"
]
},
"annotation":{
"ncbigi":[
"16421074"
],
"refseq_locus_tag":[
"STM2530"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1332",
"name":"rfc",
"notes":{
"original_bigg_ids":[
"STM1332"
]
},
"annotation":{
"ncbigi":[
"16419851"
],
"refseq_locus_tag":[
"STM1332"
],
"refseq_name":[
"rfc"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2971",
"name":"sdaB",
"notes":{
"original_bigg_ids":[
"STM2971"
]
},
"annotation":{
"ncbigi":[
"16421522"
],
"refseq_locus_tag":[
"STM2971"
],
"refseq_name":[
"sdaB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0966",
"name":"dmsC",
"notes":{
"original_bigg_ids":[
"STM0966"
]
},
"annotation":{
"ncbigi":[
"16419478"
],
"refseq_locus_tag":[
"STM0966"
],
"refseq_name":[
"dmsC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3244",
"name":"tdcB",
"notes":{
"original_bigg_ids":[
"STM3244"
]
},
"annotation":{
"ncbigi":[
"16421802"
],
"refseq_locus_tag":[
"STM3244"
],
"refseq_name":[
"tdcB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0964",
"name":"dmsA",
"notes":{
"original_bigg_ids":[
"STM0964"
]
},
"annotation":{
"ncbigi":[
"16419476"
],
"refseq_locus_tag":[
"STM0964"
],
"refseq_name":[
"dmsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3905",
"name":"ilvA",
"notes":{
"original_bigg_ids":[
"STM3905"
]
},
"annotation":{
"ncbigi":[
"16422473"
],
"refseq_locus_tag":[
"STM3905"
],
"refseq_name":[
"ilvA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2092",
"name":"rfbF",
"notes":{
"original_bigg_ids":[
"STM2092"
]
},
"annotation":{
"ncbigi":[
"16420624"
],
"refseq_locus_tag":[
"STM2092"
],
"refseq_name":[
"rfbF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2091",
"name":"rfbG",
"notes":{
"original_bigg_ids":[
"STM2091"
]
},
"annotation":{
"ncbigi":[
"16420623"
],
"refseq_locus_tag":[
"STM2091"
],
"refseq_name":[
"rfbG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1496",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1496"
]
},
"annotation":{
"ncbigi":[
"16420016"
],
"refseq_locus_tag":[
"STM1496"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2090",
"name":"rfbH",
"notes":{
"original_bigg_ids":[
"STM2090"
]
},
"annotation":{
"ncbigi":[
"16420622"
],
"refseq_locus_tag":[
"STM2090"
],
"refseq_name":[
"rfbH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1826",
"name":"sdaA",
"notes":{
"original_bigg_ids":[
"STM1826"
]
},
"annotation":{
"ncbigi":[
"16420358"
],
"refseq_locus_tag":[
"STM1826"
],
"refseq_name":[
"sdaA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1556",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1556"
]
},
"annotation":{
"ncbigi":[
"16420077"
],
"refseq_locus_tag":[
"STM1556"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2093",
"name":"rfbI",
"notes":{
"original_bigg_ids":[
"STM2093"
]
},
"annotation":{
"ncbigi":[
"16420625"
],
"refseq_locus_tag":[
"STM2093"
],
"refseq_name":[
"rfbI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0004",
"name":"thrC",
"notes":{
"original_bigg_ids":[
"STM0004"
]
},
"annotation":{
"ncbigi":[
"16418497"
],
"refseq_locus_tag":[
"STM0004"
],
"refseq_name":[
"thrC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0787",
"name":"hutI",
"notes":{
"original_bigg_ids":[
"STM0787"
]
},
"annotation":{
"ncbigi":[
"16419293"
],
"refseq_locus_tag":[
"STM0787"
],
"refseq_name":[
"hutI"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2089",
"name":"rfbJ",
"notes":{
"original_bigg_ids":[
"STM2089"
]
},
"annotation":{
"ncbigi":[
"16420621"
],
"refseq_locus_tag":[
"STM2089"
],
"refseq_name":[
"rfbJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0788",
"name":"hutG",
"notes":{
"original_bigg_ids":[
"STM0788"
]
},
"annotation":{
"ncbigi":[
"16419294"
],
"refseq_locus_tag":[
"STM0788"
],
"refseq_name":[
"hutG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1333",
"name":"thrS",
"notes":{
"original_bigg_ids":[
"STM1333"
]
},
"annotation":{
"ncbigi":[
"16419852"
],
"refseq_locus_tag":[
"STM1333"
],
"refseq_name":[
"thrS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0364",
"name":"foxA",
"notes":{
"original_bigg_ids":[
"STM0364"
]
},
"annotation":{
"ncbigi":[
"16418866"
],
"refseq_locus_tag":[
"STM0364"
],
"refseq_name":[
"foxA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3959",
"name":"rhtC",
"notes":{
"original_bigg_ids":[
"STM3959"
]
},
"annotation":{
"ncbigi":[
"16422523"
],
"refseq_locus_tag":[
"STM3959"
],
"refseq_name":[
"rhtC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2341",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2341"
]
},
"annotation":{
"ncbigi":[
"16420883"
],
"refseq_locus_tag":[
"STM2341"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2340",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2340"
]
},
"annotation":{
"ncbigi":[
"16420882"
],
"refseq_locus_tag":[
"STM2340"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2774",
"name":"iroC",
"notes":{
"original_bigg_ids":[
"STM2774"
]
},
"annotation":{
"ncbigi":[
"16421322"
],
"refseq_locus_tag":[
"STM2774"
],
"refseq_name":[
"iroC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3792",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3792"
]
},
"annotation":{
"ncbigi":[
"16422362"
],
"refseq_locus_tag":[
"STM3792"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3333",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3333"
]
},
"annotation":{
"ncbigi":[
"16421891"
],
"refseq_locus_tag":[
"STM3333"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3334",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3334"
]
},
"annotation":{
"ncbigi":[
"16421892"
],
"refseq_locus_tag":[
"STM3334"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2474",
"name":"tktB",
"notes":{
"original_bigg_ids":[
"STM2474"
]
},
"annotation":{
"ncbigi":[
"16421015"
],
"refseq_locus_tag":[
"STM2474"
],
"refseq_name":[
"tktB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1341",
"name":"btuE",
"notes":{
"original_bigg_ids":[
"STM1341"
]
},
"annotation":{
"ncbigi":[
"16419860"
],
"refseq_locus_tag":[
"STM1341"
],
"refseq_name":[
"btuE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4433",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4433"
]
},
"annotation":{
"ncbigi":[
"16422997"
],
"refseq_locus_tag":[
"STM4433"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1627",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1627"
]
},
"annotation":{
"ncbigi":[
"16420152"
],
"refseq_locus_tag":[
"STM1627"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4425",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4425"
]
},
"annotation":{
"ncbigi":[
"16422988"
],
"refseq_locus_tag":[
"STM4425"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1567",
"name":"adhP",
"notes":{
"original_bigg_ids":[
"STM1567"
]
},
"annotation":{
"ncbigi":[
"16420089"
],
"refseq_locus_tag":[
"STM1567"
],
"refseq_name":[
"adhP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2461",
"name":"eutG",
"notes":{
"original_bigg_ids":[
"STM2461"
]
},
"annotation":{
"ncbigi":[
"16421001"
],
"refseq_locus_tag":[
"STM2461"
],
"refseq_name":[
"eutG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4421",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4421"
]
},
"annotation":{
"ncbigi":[
"16422984"
],
"refseq_locus_tag":[
"STM4421"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0434",
"name":"apbA",
"notes":{
"original_bigg_ids":[
"STM0434"
]
},
"annotation":{
"ncbigi":[
"16418939"
],
"refseq_locus_tag":[
"STM0434"
],
"refseq_name":[
"apbA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1316",
"name":"celF",
"notes":{
"original_bigg_ids":[
"STM1316"
]
},
"annotation":{
"ncbigi":[
"16419834"
],
"refseq_locus_tag":[
"STM1316"
],
"refseq_name":[
"celF"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4420",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4420"
]
},
"annotation":{
"ncbigi":[
"16422983"
],
"refseq_locus_tag":[
"STM4420"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2289",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2289"
]
},
"annotation":{
"ncbigi":[
"16420828"
],
"refseq_locus_tag":[
"STM2289"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2573",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2573"
]
},
"annotation":{
"ncbigi":[
"16421120"
],
"refseq_locus_tag":[
"STM2573"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2949",
"name":"ptpS",
"notes":{
"original_bigg_ids":[
"STM2949"
]
},
"annotation":{
"ncbigi":[
"16421499"
],
"refseq_locus_tag":[
"STM2949"
],
"refseq_name":[
"ptpS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0628",
"name":"pagP",
"notes":{
"original_bigg_ids":[
"STM0628"
]
},
"annotation":{
"ncbigi":[
"16419140"
],
"refseq_locus_tag":[
"STM0628"
],
"refseq_name":[
"pagP"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2232",
"name":"oafA",
"notes":{
"original_bigg_ids":[
"STM2232"
]
},
"annotation":{
"ncbigi":[
"16420770"
],
"refseq_locus_tag":[
"STM2232"
],
"refseq_name":[
"oafA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1793",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1793"
]
},
"annotation":{
"ncbigi":[
"16420323"
],
"refseq_locus_tag":[
"STM1793"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1792",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1792"
]
},
"annotation":{
"ncbigi":[
"16420322"
],
"refseq_locus_tag":[
"STM1792"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0691",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0691"
]
},
"annotation":{
"ncbigi":[
"16419198"
],
"refseq_locus_tag":[
"STM0691"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0690",
"name":"citB",
"notes":{
"original_bigg_ids":[
"STM0690"
]
},
"annotation":{
"ncbigi":[
"16419197"
],
"refseq_locus_tag":[
"STM0690"
],
"refseq_name":[
"citB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1314",
"name":"celC",
"notes":{
"original_bigg_ids":[
"STM1314"
]
},
"annotation":{
"ncbigi":[
"16419832"
],
"refseq_locus_tag":[
"STM1314"
],
"refseq_name":[
"celC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0741",
"name":"cydB",
"notes":{
"original_bigg_ids":[
"STM0741"
]
},
"annotation":{
"ncbigi":[
"16419251"
],
"refseq_locus_tag":[
"STM0741"
],
"refseq_name":[
"cydB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1312",
"name":"celA",
"notes":{
"original_bigg_ids":[
"STM1312"
]
},
"annotation":{
"ncbigi":[
"16419830"
],
"refseq_locus_tag":[
"STM1312"
],
"refseq_name":[
"celA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0740",
"name":"cydA",
"notes":{
"original_bigg_ids":[
"STM0740"
]
},
"annotation":{
"ncbigi":[
"16419250"
],
"refseq_locus_tag":[
"STM0740"
],
"refseq_name":[
"cydA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1313",
"name":"celB",
"notes":{
"original_bigg_ids":[
"STM1313"
]
},
"annotation":{
"ncbigi":[
"16419831"
],
"refseq_locus_tag":[
"STM1313"
],
"refseq_name":[
"celB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1582",
"name":"nhoA",
"notes":{
"original_bigg_ids":[
"STM1582"
]
},
"annotation":{
"ncbigi":[
"16420105"
],
"refseq_locus_tag":[
"STM1582"
],
"refseq_name":[
"nhoA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2662",
"name":"rluD",
"notes":{
"original_bigg_ids":[
"STM2662"
]
},
"annotation":{
"ncbigi":[
"16421209"
],
"refseq_locus_tag":[
"STM2662"
],
"refseq_name":[
"rluD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1651",
"name":"nifJ",
"notes":{
"original_bigg_ids":[
"STM1651"
]
},
"annotation":{
"ncbigi":[
"16420178"
],
"refseq_locus_tag":[
"STM1651"
],
"refseq_name":[
"nifJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3261",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3261"
]
},
"annotation":{
"ncbigi":[
"16421819"
],
"refseq_locus_tag":[
"STM3261"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2016",
"name":"cobT",
"notes":{
"original_bigg_ids":[
"STM2016"
]
},
"annotation":{
"ncbigi":[
"16420545"
],
"refseq_locus_tag":[
"STM2016"
],
"refseq_name":[
"cobT"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1221",
"name":"cobB",
"notes":{
"original_bigg_ids":[
"STM1221"
]
},
"annotation":{
"ncbigi":[
"16419739"
],
"refseq_locus_tag":[
"STM1221"
],
"refseq_name":[
"cobB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3253",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3253"
]
},
"annotation":{
"ncbigi":[
"16421811"
],
"refseq_locus_tag":[
"STM3253"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2079",
"name":"wzzB",
"notes":{
"original_bigg_ids":[
"STM2079"
]
},
"annotation":{
"ncbigi":[
"16420611"
],
"refseq_locus_tag":[
"STM2079"
],
"refseq_name":[
"wzzB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3137",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3137"
]
},
"annotation":{
"ncbigi":[
"16421691"
],
"refseq_locus_tag":[
"STM3137"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0589",
"name":"fepE",
"notes":{
"original_bigg_ids":[
"STM0589"
]
},
"annotation":{
"ncbigi":[
"16419099"
],
"refseq_locus_tag":[
"STM0589"
],
"refseq_name":[
"fepE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3135",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3135"
]
},
"annotation":{
"ncbigi":[
"16421689"
],
"refseq_locus_tag":[
"STM3135"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3927",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3927"
]
},
"annotation":{
"ncbigi":[
"16422495"
],
"refseq_locus_tag":[
"STM3927"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3136",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3136"
]
},
"annotation":{
"ncbigi":[
"16421690"
],
"refseq_locus_tag":[
"STM3136"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2776",
"name":"iroE",
"notes":{
"original_bigg_ids":[
"STM2776"
]
},
"annotation":{
"ncbigi":[
"16421324"
],
"refseq_locus_tag":[
"STM2776"
],
"refseq_name":[
"iroE"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2777",
"name":"iroN",
"notes":{
"original_bigg_ids":[
"STM2777"
]
},
"annotation":{
"ncbigi":[
"16421325"
],
"refseq_locus_tag":[
"STM2777"
],
"refseq_name":[
"iroN"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2775",
"name":"iroD",
"notes":{
"original_bigg_ids":[
"STM2775"
]
},
"annotation":{
"ncbigi":[
"16421323"
],
"refseq_locus_tag":[
"STM2775"
],
"refseq_name":[
"iroD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0054",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0054"
]
},
"annotation":{
"ncbigi":[
"16418550"
],
"refseq_locus_tag":[
"STM0054"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0586",
"name":"fes",
"notes":{
"original_bigg_ids":[
"STM0586"
]
},
"annotation":{
"ncbigi":[
"16419096"
],
"refseq_locus_tag":[
"STM0586"
],
"refseq_name":[
"fes"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3186",
"name":"tolC",
"notes":{
"original_bigg_ids":[
"STM3186"
]
},
"annotation":{
"ncbigi":[
"16421742"
],
"refseq_locus_tag":[
"STM3186"
],
"refseq_name":[
"tolC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3353",
"name":"oadG",
"notes":{
"original_bigg_ids":[
"STM3353"
]
},
"annotation":{
"ncbigi":[
"16421912"
],
"refseq_locus_tag":[
"STM3353"
],
"refseq_name":[
"oadG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2773",
"name":"iroB",
"notes":{
"original_bigg_ids":[
"STM2773"
]
},
"annotation":{
"ncbigi":[
"16421321"
],
"refseq_locus_tag":[
"STM2773"
],
"refseq_name":[
"iroB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3351",
"name":"oadB",
"notes":{
"original_bigg_ids":[
"STM3351"
]
},
"annotation":{
"ncbigi":[
"16421910"
],
"refseq_locus_tag":[
"STM3351"
],
"refseq_name":[
"oadB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1375",
"name":"ynhG",
"notes":{
"original_bigg_ids":[
"STM1375"
]
},
"annotation":{
"ncbigi":[
"16419895"
],
"refseq_locus_tag":[
"STM1375"
],
"refseq_name":[
"ynhG"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0056",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0056"
]
},
"annotation":{
"ncbigi":[
"16418552"
],
"refseq_locus_tag":[
"STM0056"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0055",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0055"
]
},
"annotation":{
"ncbigi":[
"16418551"
],
"refseq_locus_tag":[
"STM0055"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1215",
"name":"ycfS",
"notes":{
"original_bigg_ids":[
"STM1215"
]
},
"annotation":{
"ncbigi":[
"16419733"
],
"refseq_locus_tag":[
"STM1215"
],
"refseq_name":[
"ycfS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3352",
"name":"oadA",
"notes":{
"original_bigg_ids":[
"STM3352"
]
},
"annotation":{
"ncbigi":[
"16421911"
],
"refseq_locus_tag":[
"STM3352"
],
"refseq_name":[
"oadA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0837",
"name":"ybiS",
"notes":{
"original_bigg_ids":[
"STM0837"
]
},
"annotation":{
"ncbigi":[
"16419343"
],
"refseq_locus_tag":[
"STM0837"
],
"refseq_name":[
"ybiS"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0057",
"name":"",
"notes":{
"original_bigg_ids":[
"STM0057"
]
},
"annotation":{
"ncbigi":[
"16418553"
],
"refseq_locus_tag":[
"STM0057"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0689",
"name":"citA",
"notes":{
"original_bigg_ids":[
"STM0689"
]
},
"annotation":{
"ncbigi":[
"16419196"
],
"refseq_locus_tag":[
"STM0689"
],
"refseq_name":[
"citA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0047",
"name":"lspA",
"notes":{
"original_bigg_ids":[
"STM0047"
]
},
"annotation":{
"ncbigi":[
"16418542"
],
"refseq_locus_tag":[
"STM0047"
],
"refseq_name":[
"lspA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3002",
"name":"lgt",
"notes":{
"original_bigg_ids":[
"STM3002"
]
},
"annotation":{
"ncbigi":[
"16421552"
],
"refseq_locus_tag":[
"STM3002"
],
"refseq_name":[
"lgt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2786",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2786"
]
},
"annotation":{
"ncbigi":[
"16421334"
],
"refseq_locus_tag":[
"STM2786"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3828",
"name":"dgoA",
"notes":{
"original_bigg_ids":[
"STM3828"
]
},
"annotation":{
"ncbigi":[
"16422401"
],
"refseq_locus_tag":[
"STM3828"
],
"refseq_name":[
"dgoA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2788",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2788"
]
},
"annotation":{
"ncbigi":[
"16421336"
],
"refseq_locus_tag":[
"STM2788"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0791",
"name":"hutH",
"notes":{
"original_bigg_ids":[
"STM0791"
]
},
"annotation":{
"ncbigi":[
"16419296"
],
"refseq_locus_tag":[
"STM0791"
],
"refseq_name":[
"hutH"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2787",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2787"
]
},
"annotation":{
"ncbigi":[
"16421335"
],
"refseq_locus_tag":[
"STM2787"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3051",
"name":"bglA",
"notes":{
"original_bigg_ids":[
"STM3051"
]
},
"annotation":{
"ncbigi":[
"16421602"
],
"refseq_locus_tag":[
"STM3051"
],
"refseq_name":[
"bglA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1377",
"name":"lpp",
"notes":{
"original_bigg_ids":[
"STM1377"
]
},
"annotation":{
"ncbigi":[
"16419897"
],
"refseq_locus_tag":[
"STM1377"
],
"refseq_name":[
"lpp"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM0666",
"name":"lnt",
"notes":{
"original_bigg_ids":[
"STM0666"
]
},
"annotation":{
"ncbigi":[
"16419179"
],
"refseq_locus_tag":[
"STM0666"
],
"refseq_name":[
"lnt"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1257",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1257"
]
},
"annotation":{
"ncbigi":[
"16419773"
],
"refseq_locus_tag":[
"STM1257"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2392",
"name":"vacJ",
"notes":{
"original_bigg_ids":[
"STM2392"
]
},
"annotation":{
"ncbigi":[
"16420936"
],
"refseq_locus_tag":[
"STM2392"
],
"refseq_name":[
"vacJ"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1255",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1255"
]
},
"annotation":{
"ncbigi":[
"16419771"
],
"refseq_locus_tag":[
"STM1255"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2393",
"name":"yfdC",
"notes":{
"original_bigg_ids":[
"STM2393"
]
},
"annotation":{
"ncbigi":[
"16420937"
],
"refseq_locus_tag":[
"STM2393"
],
"refseq_name":[
"yfdC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1746_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1746.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM1259",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1259"
]
},
"annotation":{
"ncbigi":[
"16419775"
],
"refseq_locus_tag":[
"STM1259"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1256",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1256"
]
},
"annotation":{
"ncbigi":[
"16419772"
],
"refseq_locus_tag":[
"STM1256"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2838_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2838.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM1258",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1258"
]
},
"annotation":{
"ncbigi":[
"16419774"
],
"refseq_locus_tag":[
"STM1258"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3290_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3290.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM4456",
"name":"mgtA",
"notes":{
"original_bigg_ids":[
"STM4456"
]
},
"annotation":{
"ncbigi":[
"16423020"
],
"refseq_locus_tag":[
"STM4456"
],
"refseq_name":[
"mgtA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4383_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4383.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM3259",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3259"
]
},
"annotation":{
"ncbigi":[
"16421817"
],
"refseq_locus_tag":[
"STM3259"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4188_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4188.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM3258",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3258"
]
},
"annotation":{
"ncbigi":[
"16421816"
],
"refseq_locus_tag":[
"STM3258"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3260",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3260"
]
},
"annotation":{
"ncbigi":[
"16421818"
],
"refseq_locus_tag":[
"STM3260"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2323_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2323.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM3255",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3255"
]
},
"annotation":{
"ncbigi":[
"16421813"
],
"refseq_locus_tag":[
"STM3255"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2316_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2316.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM3256",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3256"
]
},
"annotation":{
"ncbigi":[
"16421814"
],
"refseq_locus_tag":[
"STM3256"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4580_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4580.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM3254",
"name":"",
"notes":{
"original_bigg_ids":[
"STM3254"
]
},
"annotation":{
"ncbigi":[
"16421812"
],
"refseq_locus_tag":[
"STM3254"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4559_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4559.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM4278_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4278.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM2864",
"name":"sitD",
"notes":{
"original_bigg_ids":[
"STM2864"
]
},
"annotation":{
"ncbigi":[
"16421410"
],
"refseq_locus_tag":[
"STM2864"
],
"refseq_name":[
"sitD"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2499_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2499.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM1892_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM1892.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM2861",
"name":"sitA",
"notes":{
"original_bigg_ids":[
"STM2861"
]
},
"annotation":{
"ncbigi":[
"16421407"
],
"refseq_locus_tag":[
"STM2861"
],
"refseq_name":[
"sitA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2105_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM2105.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM2862",
"name":"sitB",
"notes":{
"original_bigg_ids":[
"STM2862"
]
},
"annotation":{
"ncbigi":[
"16421408"
],
"refseq_locus_tag":[
"STM2862"
],
"refseq_name":[
"sitB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM4305_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4305.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM4424_S",
"name":"",
"notes":{
"original_bigg_ids":[
"STM4424.S"
]
},
"annotation":{
"sbo":"SBO:0000243"
}
},
{
"id":"STM3506",
"name":"feoB",
"notes":{
"original_bigg_ids":[
"STM3506"
]
},
"annotation":{
"ncbigi":[
"16422065"
],
"refseq_locus_tag":[
"STM3506"
],
"refseq_name":[
"feoB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2863",
"name":"sitC",
"notes":{
"original_bigg_ids":[
"STM2863"
]
},
"annotation":{
"ncbigi":[
"16421409"
],
"refseq_locus_tag":[
"STM2863"
],
"refseq_name":[
"sitC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1383",
"name":"ttrA",
"notes":{
"original_bigg_ids":[
"STM1383"
]
},
"annotation":{
"ncbigi":[
"16419903"
],
"refseq_locus_tag":[
"STM1383"
],
"refseq_name":[
"ttrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1384",
"name":"ttrC",
"notes":{
"original_bigg_ids":[
"STM1384"
]
},
"annotation":{
"ncbigi":[
"16419904"
],
"refseq_locus_tag":[
"STM1384"
],
"refseq_name":[
"ttrC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM1385",
"name":"ttrB",
"notes":{
"original_bigg_ids":[
"STM1385"
]
},
"annotation":{
"ncbigi":[
"16419905"
],
"refseq_locus_tag":[
"STM1385"
],
"refseq_name":[
"ttrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2065",
"name":"phsA",
"notes":{
"original_bigg_ids":[
"STM2065"
]
},
"annotation":{
"ncbigi":[
"16420596"
],
"refseq_locus_tag":[
"STM2065"
],
"refseq_name":[
"phsA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2064",
"name":"phsB",
"notes":{
"original_bigg_ids":[
"STM2064"
]
},
"annotation":{
"ncbigi":[
"16420595"
],
"refseq_locus_tag":[
"STM2064"
],
"refseq_name":[
"phsB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2063",
"name":"phsC",
"notes":{
"original_bigg_ids":[
"STM2063"
]
},
"annotation":{
"ncbigi":[
"16420594"
],
"refseq_locus_tag":[
"STM2063"
],
"refseq_name":[
"phsC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2549",
"name":"asrB",
"notes":{
"original_bigg_ids":[
"STM2549"
]
},
"annotation":{
"ncbigi":[
"16421095"
],
"refseq_locus_tag":[
"STM2549"
],
"refseq_name":[
"asrB"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2550",
"name":"asrC",
"notes":{
"original_bigg_ids":[
"STM2550"
]
},
"annotation":{
"ncbigi":[
"16421096"
],
"refseq_locus_tag":[
"STM2550"
],
"refseq_name":[
"asrC"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM2548",
"name":"asrA",
"notes":{
"original_bigg_ids":[
"STM2548"
]
},
"annotation":{
"ncbigi":[
"16421094"
],
"refseq_locus_tag":[
"STM2548"
],
"refseq_name":[
"asrA"
],
"sbo":"SBO:0000243"
}
},
{
"id":"STM3763",
"name":"mgtB",
"notes":{
"original_bigg_ids":[
"STM3763"
]
},
"annotation":{
"ncbigi":[
"16422332"
],
"refseq_locus_tag":[
"STM3763"
],
"refseq_name":[
"mgtB"
],
"sbo":"SBO:0000243"
}
}
],
"id":"STM_v1_0",
"compartments":{
"c":"cytosol",
"e":"extracellular space",
"p":"periplasm"
},
"version":"1"
}